Title: Generation of Up to Four Different Types of Variables
Description: Generation of a chosen number of count, binary, ordinal, and continuous random variables, with specified correlations and marginal properties.
Author: Hakan Demirtas, Rachel Nordgren, Rawan Allozi, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinOrdNonNor versions 1.5 dated 2019-03-03 and 1.5.1 dated 2019-05-16
DESCRIPTION | 8 - MD5 | 10 +- man/PoisBinOrdNonNor-package.Rd | 11 -- man/find.cor.mat.star.Rd | 5 - man/genPBONN.Rd | 4 man/validate.cor.mat.Rd | 177 +++++++++++++++++++--------------------- 6 files changed, 101 insertions(+), 114 deletions(-)
More information about PoisBinOrdNonNor at CRAN
Permanent link
Title: Convert Strings into any Case
Description: A consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.
Author: Malte Grosser [aut, cre]
Maintainer: Malte Grosser <malte.grosser@gmail.com>
Diff between snakecase versions 0.9.2 dated 2018-08-14 and 0.10.0 dated 2019-05-16
DESCRIPTION | 12 +- MD5 | 35 +++--- NAMESPACE | 2 NEWS.md | 25 +++- R/abbreviation_internal.R | 2 R/caseconverters.R | 76 +++++++++++-- R/parsing_helpers_internal.R |only R/replace_special_characters_internal.R | 7 + R/to_any_case.R | 150 +++++++++++++++++--------- R/to_parsed_case_internal.R | 98 +++++----------- build/vignette.rds |binary inst/doc/caseconverters.html | 71 ++++++++---- man/caseconverter.Rd | 20 ++- man/figures/Workflow02.PNG |only man/parsing_helpers.Rd |only man/to_any_case.Rd | 20 +-- man/to_parsed_case_internal.Rd | 4 tests/testthat/test-to_any_case.R | 73 +++++++++++- tests/testthat/test-to_parsed_case_internal.R | 7 + tests/testthat/test-to_random_case.R |only tests/testthat/test-to_title_case.R |only 21 files changed, 396 insertions(+), 206 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or
better understand data generating processes. The user specifies a set of
relationships between covariates, and generates data based on these
specifications. The final data sets can represent data from randomized
control trials, repeated measure (longitudinal) designs, and cluster
randomized trials. Missingness can be generated using various
mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.12 dated 2019-02-26 and 0.1.13 dated 2019-05-16
DESCRIPTION | 12 ++++++------ MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS.md | 8 +++++++- R/genCorOrdCat.R | 21 +++++++++++++-------- R/iccRE.R | 15 ++++++++++++--- R/trtStepWedge.R |only build/vignette.rds |binary inst/doc/simstudy.R | 1 + inst/doc/simstudy.Rmd | 1 + inst/doc/simstudy.html | 25 +++++++++++++------------ man/genCorOrdCat.Rd | 5 +++-- man/iccRE.Rd | 8 +++++--- man/trtStepWedge.Rd |only vignettes/simstudy.Rmd | 1 + 15 files changed, 77 insertions(+), 47 deletions(-)
Title: Terminal Progress Bars
Description: Configurable Progress bars, they may include percentage,
elapsed time, and/or the estimated completion time. They work in
terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the
'macOS' 'R.app'. The package also provides a 'C++' 'API', that works
with or without 'Rcpp'.
Author: Gábor Csárdi [aut, cre], Rich FitzJohn [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between progress versions 1.2.1 dated 2019-05-13 and 1.2.2 dated 2019-05-16
DESCRIPTION | 6 +++--- MD5 | 5 +++-- NEWS.md |only inst/include/RProgress.h | 8 ++++---- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Sampling from Order Statistics of New Families of Distributions
Description: Set of tools to generate samples of order statistics from new families of distributions.
The main references for this package are: Gentle, J. (2009), Computational Statistics, Springer-Verlag
and Naradajah, S. and Rocha, R. (2016),<DOI:10.18637/jss.v069.i10>.
The families of distributions are: Marshall Olkin G distributions, exponentiated G distributions, beta G distributions, gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions,
beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G distributions, Weibull G distributions, log gamma G I distributions, log gamma G II distributions,
exponentiated generalized G distributions, exponentiated Kumaraswamy G distributions, geometric exponential Poisson G distributions, truncated-exponential skew-symmetric G distributions, modified beta G distributions,
and exponentiated exponential Poisson G distributions.
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between orders versions 0.1.2 dated 2019-03-20 and 0.1.3 dated 2019-05-16
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++++++++-- NAMESPACE | 21 +++++++++++++++++++++ R/order_gammag1.R |only R/order_gammag2.R |only R/order_gbg.R |only R/order_kumg.R |only R/order_loggammag1.R |only R/order_loggammag2.R |only R/order_mbetag.R |only man/order_gammag1.Rd |only man/order_gammag2.Rd |only man/order_gbg.Rd |only man/order_kumg.Rd |only man/order_loggammag1.Rd |only man/order_loggammag2.Rd |only man/order_mbetag.Rd |only 17 files changed, 40 insertions(+), 5 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the only such
package with read and write support for TIFF files with floating point
(real-numbered) pixels, and the only package that can correctly import TIFF
files that were saved from 'ImageJ' and write TIFF files than can be
correctly read by 'ImageJ' <https://imagej.nih.gov/ij/>.
Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 1.5.0 dated 2018-10-31 and 1.5.1 dated 2019-05-16
DESCRIPTION | 14 ++++---- MD5 | 22 ++++++------- NEWS.md | 44 ++++++++++++++++----------- R/graphics.R | 4 +- R/text_io.R | 5 ++- R/utils.R | 1 README.md | 1 build/vignette.rds |binary inst/WORDLIST | 29 ++++++++++++------ inst/doc/reading-and-writing-images.html | 49 ++++++++++++++++++++++--------- inst/doc/text-images.html | 7 +++- inst/doc/the-imagej-problem.html | 41 ++++++++++++++++++++----- 12 files changed, 143 insertions(+), 74 deletions(-)
Title: Tidy Data Validation Reports
Description: Tools for creating data validation pipelines and tidy reports. This
package offers a framework for exploring and validating data frame like
objects using 'dplyr' grammar of data manipulation.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between ruler versions 0.2.0 dated 2019-02-15 and 0.2.1 dated 2019-05-16
DESCRIPTION | 6 MD5 | 21 - NEWS.md | 4 R/rules.R | 47 ++- README.md | 207 +++++++++----- build/vignette.rds |binary inst/WORDLIST |only inst/doc/design-and-format.html | 193 +++++++++++++ inst/doc/rule-packs.html | 479 ++++++++++++++++++++++++--------- inst/doc/validation.html | 567 +++++++++++++++++++++++++++------------- man/rules.Rd | 4 tests/testthat/test-rules.R | 24 + 12 files changed, 1134 insertions(+), 418 deletions(-)
Title: Data Generation with Poisson, Binary and Continuous Components
Description: Generation of multiple count, binary and continuous variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinNonNor versions 1.3 dated 2019-03-05 and 1.3.1 dated 2019-05-16
DESCRIPTION | 8 +-- MD5 | 6 +- man/PoisBinNonNor-package.Rd | 4 - man/validation.corr.Rd | 110 +++++++++++++++++++++---------------------- 4 files changed, 64 insertions(+), 64 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions; supports sf and stars.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between gstat versions 2.0-1 dated 2019-04-25 and 2.0-2 dated 2019-05-16
gstat-2.0-1/gstat/inst/NEWS.Rd |only gstat-2.0-1/gstat/vignettes/gstat.Rout.save |only gstat-2.0-1/gstat/vignettes/prs.Rout.save |only gstat-2.0-2/gstat/DESCRIPTION | 6 - gstat-2.0-2/gstat/MD5 | 65 +++++++--------- gstat-2.0-2/gstat/NEWS.md | 54 +++++++++++++ gstat-2.0-2/gstat/R/krige.R | 25 +++++- gstat-2.0-2/gstat/R/predict.gstat.R | 5 + gstat-2.0-2/gstat/R/variogramST.R | 16 ++-- gstat-2.0-2/gstat/build/vignette.rds |binary gstat-2.0-2/gstat/data/DE_RB_2005.rda |binary gstat-2.0-2/gstat/data/coalash.rda |binary gstat-2.0-2/gstat/data/fulmar.rda |binary gstat-2.0-2/gstat/data/jura.rda |binary gstat-2.0-2/gstat/data/meuse.all.rda |binary gstat-2.0-2/gstat/data/meuse.alt.rda |binary gstat-2.0-2/gstat/data/ncp.grid.rda |binary gstat-2.0-2/gstat/data/oxford.rda |binary gstat-2.0-2/gstat/data/pcb.rda |binary gstat-2.0-2/gstat/data/sic2004.rda |binary gstat-2.0-2/gstat/data/sic97.rda |binary gstat-2.0-2/gstat/data/tull.rda |binary gstat-2.0-2/gstat/data/vv.rda |binary gstat-2.0-2/gstat/data/walker.rda |binary gstat-2.0-2/gstat/data/wind.rda |binary gstat-2.0-2/gstat/inst/doc/gstat.pdf |binary gstat-2.0-2/gstat/inst/doc/prs.pdf |binary gstat-2.0-2/gstat/inst/doc/spatio-temporal-kriging.pdf |binary gstat-2.0-2/gstat/inst/doc/st.pdf |binary gstat-2.0-2/gstat/tests/cv.Rout.save | 60 +++++++-------- gstat-2.0-2/gstat/tests/na.action.Rout.save | 68 ++++++++--------- gstat-2.0-2/gstat/tests/sim.Rout.save | 34 ++++---- gstat-2.0-2/gstat/tests/stars.R | 12 +++ gstat-2.0-2/gstat/tests/stars.Rout.save | 33 +++++++- gstat-2.0-2/gstat/tests/unproj.Rout.save | 16 ++-- 35 files changed, 254 insertions(+), 140 deletions(-)
Title: R Interface to Google Charts
Description: R interface to Google's chart tools, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with an Internet connection is required and for some
charts a Flash player. The data remains local and is not
uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb],
Ashley Baldry [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between googleVis versions 0.6.3 dated 2018-11-12 and 0.6.4 dated 2019-05-16
DESCRIPTION | 16 MD5 | 44 - NAMESPACE | 3 NEWS | 11 R/gvisWordTree.R |only R/shiny.R | 2 README.md | 2 THANKS | 1 build/googleVis.pdf |binary build/vignette.rds |binary data/Cats.RData |only demo/googleVis.R | 5 inst/doc/Using_Roles_via_googleVis.html | 220 +++--- inst/doc/Using_Trendlines_with_googleVis.html | 80 +- inst/doc/Using_googleVis_with_knitr.html | 76 +- inst/doc/googleVis.Rnw | 8 inst/doc/googleVis.pdf |binary inst/doc/googleVis_examples.R | 4 inst/doc/googleVis_examples.Rmd | 4 inst/doc/googleVis_examples.html | 878 +++++++++++++++----------- man/Cats.Rd |only man/gvisGeoChart.Rd | 2 man/gvisWordTree.Rd |only vignettes/googleVis.Rnw | 8 vignettes/googleVis_examples.Rmd | 4 25 files changed, 774 insertions(+), 594 deletions(-)
Title: Effects of Changing Deposition Rates
Description: Reverse and model the effects of changing deposition rates on geological data and rates. Based on Hohmann (2018) <doi:10.13140/RG.2.2.23372.51841> .
Author: Niklas Hohmann
Maintainer: Niklas Hohmann <Niklas.Hohmann@fau.de>
Diff between DAIME versions 0.1 dated 2019-03-24 and 1.0 dated 2019-05-16
DESCRIPTION | 12 ++--- MD5 | 35 ++++++++++---- NAMESPACE | 1 R/strattotimepointbin.R |only R/strattotimepointcont.R | 83 ++++++++++++++++++++++++++--------- R/strattotimeratebin.R |only R/strattotimeratecont.R | 99 +++++++++++++++++++++++++++++------------ R/timetostratpointbin.R |only R/timetostratpointcont.R | 95 +++++++++++++++++++++++++++++++++++++--- R/timetostratratebin.R |only R/timetostratratecont.R | 104 +++++++++++++++++++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |only inst |only man/strattotimepointbin.Rd |only man/strattotimepointcont.Rd | 69 +++++++++++++++++++---------- man/strattotimeratebin.Rd |only man/strattotimeratecont.Rd | 77 ++++++++++++++++++++------------ man/timetostratpointbin.Rd |only man/timetostratpointcont.Rd | 70 +++++++++++++++++++---------- man/timetostratratebin.Rd |only man/timetostratratecont.Rd | 44 +++++++++++++----- vignettes |only 23 files changed, 517 insertions(+), 172 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions.
In addition to maximum likelihood regression (for both mean and precision of a beta-distributed
response), bias-corrected and bias-reduced estimation as well as finite mixture models and
recursive partitioning for beta regressions are provided.
Author: Achim Zeileis [aut, cre],
Francisco Cribari-Neto [aut],
Bettina Gruen [aut],
Ioannis Kosmidis [aut],
Alexandre B. Simas [ctb] (earlier version by),
Andrea V. Rocha [ctb] (earlier version by)
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.1-1 dated 2018-09-28 and 3.1-2 dated 2019-05-16
DESCRIPTION | 8 ++-- MD5 | 58 ++++++++++++++++++------------------ NEWS | 6 +++ build/partial.rdb |binary build/vignette.rds |binary data/CarTask.rda |binary data/FoodExpenditure.rda |binary data/GasolineYield.rda |binary data/ImpreciseTask.rda |binary data/MockJurors.rda |binary data/ReadingSkills.rda |binary data/StressAnxiety.rda |binary data/WeatherTask.rda |binary inst/doc/betareg-ext.R | 1 inst/doc/betareg-ext.Rnw | 1 inst/doc/betareg-ext.pdf |binary inst/doc/betareg.R | 3 + inst/doc/betareg.Rnw | 2 + inst/doc/betareg.pdf |binary man/betamix.Rd | 1 man/betatree.Rd | 1 tests/Examples/betareg-Ex.Rout.save | 12 ++++--- tests/betamix.R | 1 tests/betamix.Rout.save | 7 ++-- tests/betatree.R | 1 tests/betatree.Rout.save | 9 +++-- vignettes/betareg-ext.Rnw | 1 vignettes/betareg-ext.Rout.save | 6 ++- vignettes/betareg.Rnw | 2 + vignettes/betareg.Rout.save | 22 ++++++++----- 30 files changed, 86 insertions(+), 56 deletions(-)
Title: Get City Bike Data from Norway
Description: Functions to get and download city bike data from
the website and API service of each city bike service in Norway. These
functions minimize time spent on getting Norwegian city bike data, and
lower barriers to start analyzing the data. The data is retrieved from
Oslo City Bike, Oslo Winter Bike, Bergen City Bike, and Trondheim City
Bike. The data is made available under
NLOD 2.0 <https://data.norge.no/nlod/en/2.0>.
Author: Iman Ghayoornia [aut, cre]
Maintainer: Iman Ghayoornia <ghayoornia.iman@gmail.com>
Diff between bysykkel versions 0.1.1.0 dated 2019-03-31 and 0.2.3 dated 2019-05-16
DESCRIPTION | 28 ++--- MD5 | 58 ++++++----- NAMESPACE | 9 + NEWS.md | 59 +++++++++-- R/bysykkel_control_api_input.R |only R/bysykkel_control_date.R |only R/bysykkel_control_input.R |only R/bysykkel_control_legacy_oslo.R |only R/dl_trips_data.R | 70 +++++++------- R/dl_trips_data_bergen.R | 14 +- R/dl_trips_data_oslo.R | 37 +++---- R/dl_trips_data_oslow.R | 14 +- R/dl_trips_data_trondheim.R | 14 +- R/fread_trips_data.R | 111 +++++++++++----------- R/fread_trips_data_oslo.R |only R/fread_trips_data_oslow.R | 10 -- R/freads_trips_data_bergen.R | 10 -- R/freads_trips_data_trondheim.R | 10 -- R/get_api_data.R | 104 ++++++++++---------- R/get_api_data_bergen.R | 80 ++++++++++------ R/get_api_data_oslo.R | 97 ++++++++++++------- R/get_api_data_oslow.R | 78 ++++++++++----- R/get_api_data_trondheim.R | 84 ++++++++++------ R/read_trips_data.R | 83 ++++++++-------- R/read_trips_data_bergen.R | 12 +- R/read_trips_data_oslo.R |only R/read_trips_data_oslow.R | 12 +- R/read_trips_data_trondheim.R | 12 +- README.md | 195 ++++++++++++++++++++++++++++++++++++++- man/dl_trips_data.Rd | 31 +++--- man/fread_trips_data.Rd | 66 ++++++------- man/get_api_data.Rd | 69 +++++++------ man/read_trips_data.Rd | 47 ++++----- 33 files changed, 871 insertions(+), 543 deletions(-)
Title: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Description: Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
Author: Hyun-Hwan Jeong [aut, cre]
Maintainer: Hyun-Hwan Jeong <hyun-hwan.jeong@bcm.edu>
Diff between CB2 versions 1.1 dated 2019-02-19 and 1.2.1 dated 2019-05-16
DESCRIPTION | 10 +-- MD5 | 28 +++++----- R/RcppExports.R | 5 + R/helpers.R | 86 +++++++++++++++++---------------- README.md | 8 ++- data/Evers_CRISPRn_RT112.rda |binary inst/doc/cb2-tutorial.html | 108 +++++++++++++++++++++--------------------- man/measure_gene_stats.Rd | 24 ++++----- man/quant.Rd | 4 + man/run_estimation.Rd | 38 +++++++------- man/run_sgrna_quant.Rd | 11 ++-- src/AdaptiveHash.h | 27 +++++++--- src/CB2.cpp | 6 +- src/RcppExports.cpp | 9 +-- tests/testthat/test.toydata.R | 39 ++++++++++++++- 15 files changed, 236 insertions(+), 167 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut] (<https://orcid.org/0000-0001-9448-8833>),
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Tim Stuart [aut] (<https://orcid.org/0000-0002-3044-0897>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <nygcSatijalab@nygenome.org>
Diff between Seurat versions 3.0.0 dated 2019-04-15 and 3.0.1 dated 2019-05-16
DESCRIPTION | 10 MD5 | 74 +-- NAMESPACE | 5 NEWS.md | 18 R/data.R | 23 - R/differential_expression.R | 279 +++++++++---- R/dimensional_reduction.R | 25 - R/generics.R | 9 R/integration.R | 20 R/objects.R | 524 ++++++++++++++++++++------ R/preprocessing.R | 278 +++++++++---- R/tree.R | 7 R/utilities.R | 68 --- R/visualization.R | 149 +++++-- R/zzz.R |only README.md | 6 data/pbmc_small.rda |binary man/DoHeatmap.Rd | 10 man/DotPlot.Rd | 8 man/FeaturePlot.Rd | 4 man/FindConservedMarkers.Rd | 16 man/FindMarkers.Rd | 27 - man/FindVariableFeatures.Rd | 4 man/GetAssayData.Rd | 2 man/HVFInfo.Rd | 12 man/LogSeuratCommand.Rd |only man/OldWhichCells.Rd | 2 man/RunCCA.Rd | 4 man/SCTransform.Rd | 6 man/ScaleData.Rd | 24 - man/SelectIntegrationFeatures.Rd | 3 man/Seurat-package.Rd |only man/SubsetData.Rd | 2 man/VariableFeaturePlot.Rd | 5 man/VariableFeatures.Rd | 7 man/as.Seurat.Rd | 17 man/pbmc_small.Rd | 23 - tests/testthat/test_differential_expression.R |only tests/testthat/test_load_10X.R | 1 tests/testthat/test_preprocessing.R | 48 +- 40 files changed, 1181 insertions(+), 539 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown' package to render
small snippets of code to target formats that include both code and output.
The goal is to encourage the sharing of small, reproducible, and runnable
examples on code-oriented websites, such as <https://stackoverflow.com> and
<https://github.com>, or in email. The user's clipboard is the default source
of input code and the default target for rendered output. 'reprex' also
extracts clean, runnable R code from various common formats, such as
copy/paste from an R session.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
David Robinson [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between reprex versions 0.2.1 dated 2018-09-16 and 0.3.0 dated 2019-05-16
reprex-0.2.1/reprex/vignettes/articles/anotherdark-andale-60-line-numbers.png |only reprex-0.2.1/reprex/vignettes/articles/bizarro-selective-reveal.png |only reprex-0.2.1/reprex/vignettes/articles/dusk-fira-35-line-numbers.png |only reprex-0.2.1/reprex/vignettes/articles/eval-false.png |only reprex-0.2.1/reprex/vignettes/articles/keynote-w00t.png |only reprex-0.3.0/reprex/DESCRIPTION | 10 - reprex-0.3.0/reprex/MD5 | 56 ++++---- reprex-0.3.0/reprex/NEWS.md | 12 + reprex-0.3.0/reprex/R/filepaths.R | 1 reprex-0.3.0/reprex/R/optionally.R | 11 + reprex-0.3.0/reprex/R/reprex-addin.R | 3 reprex-0.3.0/reprex/R/reprex-package.R |only reprex-0.3.0/reprex/R/reprex.R | 41 +++++- reprex-0.3.0/reprex/R/whisker.R | 11 - reprex-0.3.0/reprex/README.md | 4 reprex-0.3.0/reprex/build/vignette.rds |binary reprex-0.3.0/reprex/inst/doc/reprex-dos-and-donts.Rmd | 14 ++ reprex-0.3.0/reprex/inst/doc/reprex-dos-and-donts.html | 64 +++++++--- reprex-0.3.0/reprex/man/figures/logo.png |binary reprex-0.3.0/reprex/man/reprex-package.Rd |only reprex-0.3.0/reprex/man/reprex.Rd | 17 ++ reprex-0.3.0/reprex/man/reprex_addin.Rd | 2 reprex-0.3.0/reprex/man/un-reprex.Rd | 2 reprex-0.3.0/reprex/tests/testthat/test-filepaths.R | 4 reprex-0.3.0/reprex/tests/testthat/test-input.R | 9 + reprex-0.3.0/reprex/tests/testthat/test-reprex.R | 8 + reprex-0.3.0/reprex/tests/testthat/test-venues.R | 18 ++ reprex-0.3.0/reprex/vignettes/articles/datapasta-reprex.Rmd |only reprex-0.3.0/reprex/vignettes/articles/img |only reprex-0.3.0/reprex/vignettes/articles/learn-reprex.Rmd |only reprex-0.3.0/reprex/vignettes/articles/rtf.Rmd | 28 +--- reprex-0.3.0/reprex/vignettes/reprex-dos-and-donts.Rmd | 14 ++ 32 files changed, 246 insertions(+), 83 deletions(-)
Title: Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, CIE Lab, CIE Luv, or RGB. Includes ISCC-NBS color block lookup. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
Author: Jose Gama [aut, trl],
Paul Centore [aut, cph],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between munsellinterpol versions 2.3-1 dated 2019-04-21 and 2.4-1 dated 2019-05-16
DESCRIPTION | 8 ++-- MD5 | 18 ++++++----- NEWS.md | 6 +++ build/vignette.rds |binary inst/doc/dental.R |only inst/doc/dental.html | 45 +++++++++++++++++++++------ inst/doc/lightness.R |only inst/doc/lightness.pdf |binary inst/doc/lociHC.R |only inst/doc/lociHC.pdf |binary inst/doc/munsellinterpol-guide.R |only inst/doc/munsellinterpol-guide.html | 58 ++++++++++++++++++++++++++---------- 12 files changed, 98 insertions(+), 37 deletions(-)
More information about munsellinterpol at CRAN
Permanent link
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
Diff between move versions 3.1.0 dated 2018-09-11 and 3.2.0 dated 2019-05-16
ChangeLog | 6 DESCRIPTION | 10 - MD5 | 49 ++++--- NAMESPACE | 44 +++--- R/WebImport.R | 113 ++++++++++++++--- R/getDuplicatedTimestamps.R | 11 + R/namesIndiv.R |only R/thinTrack.R | 170 +++++++++++++++----------- data/ricky.csv.gz |only inst/doc/browseMovebank.R | 36 +++-- inst/doc/browseMovebank.Rnw | 29 +++- inst/doc/browseMovebank.pdf |binary inst/doc/move.Rnw | 5 inst/doc/move.pdf |binary man/getDataRepositoryData.Rd | 12 + man/getDuplicatedTimestamps.Rd | 16 +- man/getMovebankAnimals.Rd | 2 man/getMovebankData.Rd | 13 + man/getMovebankReferenceTable.Rd |only man/move.Rd | 8 - man/namesIndiv.Rd |only man/unUsedRecords-class.Rd | 2 man/unUsedRecords.Rd | 2 tests/testthat/test.getDuplicatedTimestamps.R | 6 tests/testthat/test.thin.R |only tests/testthat/test.web.R | 2 vignettes/browseMovebank.Rnw | 29 +++- vignettes/move.Rnw | 5 28 files changed, 364 insertions(+), 206 deletions(-)
Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre],
Kungliga Tekniska Högskolan [ctb] (strptime implementation),
The NetBSD Foundation, Inc. [ctb] (gmtime implementation),
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between bigrquery versions 1.1.0 dated 2019-02-05 and 1.1.1 dated 2019-05-16
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/bq-field.R | 14 +++++++++----- R/bq-table.R | 8 +++++++- R/bq-test.R | 12 ++++++------ man/api-table.Rd | 8 +++++++- man/bq_field.Rd | 7 +++++-- man/bq_test_project.Rd | 4 ++-- src/RcppExports.cpp | 2 +- tests/testthat/test-bq-table.R | 21 ++++++++++++++++++++- tests/testthat/test-dplyr.R | 15 ++++++++++++--- 12 files changed, 90 insertions(+), 36 deletions(-)
Title: Box-Cox Power Transformation
Description: Performs Box-Cox power transformation for different purposes, graphical approaches, assesses the success of the transformation via tests and plots, computes mean and confidence interval for back transformed data.
Author: Osman Dag [aut, cre], Ozgur Asar [aut], Ozlem Ilk [aut]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between AID versions 2.3 dated 2017-11-10 and 2.4 dated 2019-05-16
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- data/AADT.rda |binary inst/citation | 34 ++++++++++++++++++---------------- man/AADT.Rd | 6 +++--- man/boxcoxfr.Rd | 46 +++++++++++++++++++++++++++++++++++++++------- man/confInt.boxcoxfr.Rd | 4 ++-- man/confInt.boxcoxnc.Rd | 4 ++-- 8 files changed, 78 insertions(+), 43 deletions(-)
Title: Resampled Data Frames
Description: Create data frames with virtual groups that can be used with
'dplyr' to efficiently compute resampled statistics, generate the data for
hypothetical outcome plots, and fit multiple models on resampled variations
of the original data.
Author: Davis Vaughan [aut, cre]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between strapgod versions 0.0.1 dated 2019-03-16 and 0.0.2 dated 2019-05-16
DESCRIPTION | 8 ++--- MD5 | 26 +++++++++--------- NEWS.md | 6 ++++ R/bootstrapify.R | 4 +- R/compat-dplyr.R | 1 R/samplify.R | 2 + build/vignette.rds |binary inst/doc/dplyr-support.R | 14 ++++----- inst/doc/dplyr-support.Rmd | 20 +++++++------- inst/doc/dplyr-support.html | 47 ++++++++++++++++++--------------- man/bootstrapify.Rd | 5 ++- man/samplify.Rd | 1 tests/testthat/test-dplyr-group-funs.R | 33 +++++++++++++++++++++-- vignettes/dplyr-support.Rmd | 20 +++++++------- 14 files changed, 115 insertions(+), 72 deletions(-)
Title: Bio-Logging Toolbox
Description: An R-shiny application to plot datalogger time series at a microsecond precision as Acceleration, Temperature,
Pressure, Light intensity from CATS, AXY-TREK LUL and WACU bio-loggers. It is possible to link behavioral labels extracted
from 'BORIS' software <http://www.boris.unito.it> or manually written in a csv file.
CATS bio-logger are manufactured by <http://www.cats.is>, AXY-TREK are manufactured by <http://www.technosmart.eu> and
LUL and WACU are manufactured by <http://www.iphc.cnrs.fr/-MIBE-.html>.
Author: Sebastien Geiger [aut, cre]
Maintainer: Sebastien Geiger <sebastien.geiger@iphc.cnrs.fr>
Diff between rblt versions 0.2.4.0 dated 2019-04-09 and 0.2.4.1 dated 2019-05-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/logger.R | 20 +++++++++++--------- build/vignette.rds |binary inst/doc/rblt.Rmd | 22 ++++++++++++++++++++++ inst/doc/rblt.html | 28 +++++++++++++++++++++++++--- man/Logger-class.Rd | 6 +++++- vignettes/rblt.Rmd | 22 ++++++++++++++++++++++ 8 files changed, 95 insertions(+), 23 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <myeomans@hbs.edu>
Diff between politeness versions 0.2.6 dated 2018-10-30 and 0.3.1 dated 2019-05-16
DESCRIPTION | 10 ++++---- LICENSE | 2 - MD5 | 20 ++++++++--------- R/dictTools.R | 1 R/politeness.R | 55 ++++++++++++++++++++++++++++++++--------------- R/posTools.R | 10 +++++++- build/vignette.rds |binary data/feature_table.rdata |binary inst/doc/politeness.Rmd | 4 +-- inst/doc/politeness.html | 52 ++++++++++++++++++++++++++++++++------------ vignettes/politeness.Rmd | 4 +-- 11 files changed, 106 insertions(+), 52 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.8.4 dated 2019-04-26 and 3.8.5 dated 2019-05-16
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 32 ++++++++++++++++++++++++++++++++ R/Plot.R | 2 +- R/Regression.R | 13 +++++++------ R/bc.zmain.R | 11 +++++++---- R/plt.by.zlegend.R | 5 ++++- R/plt.zlegend.R | 1 + R/plt.ztxt.R | 20 +++++++++----------- R/reg.z4Pred.R | 5 +++-- R/reg.z5Plot.R | 10 ++++++---- R/reg.zRmd.R | 2 +- R/zzz.R | 18 ++++++++++-------- man/BarChart.Rd | 6 ------ man/Plot.Rd | 14 ++++++++------ man/Regression.Rd | 3 ++- 16 files changed, 110 insertions(+), 70 deletions(-)
Title: General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction; Evaluation of Failure-Time Surrogate Endpoints
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package:
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of the joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed.
5) Joint general frailty models in the context of the joint modelling for recurrent events with terminal event data with two independent frailty terms.
6) Joint Nested frailty models in the context of the joint modelling for recurrent events with terminal event, for hierarchically clustered data (with two levels of clustering) by including two iid gamma random effects.
7) Multivariate joint frailty models for two types of recurrent events and a terminal event.
8) Joint models for longitudinal data and a terminal event.
9) Trivariate joint models for longitudinal data, recurrent events and a terminal event.
10) Joint frailty models for the validation of surrogate endpoints in multiple randomized clinical trials with failure-time endpoints
Prediction values are available (for a terminal event or for a new recurrent event). Left-truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata are allowed. In each model, the random effects have the gamma or normal distribution. Now, you can also consider time-varying covariates effects in Cox, shared and joint frailty models (1-5). The package includes concordance measures for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Amadou Diakite, Alexandre Laurent, Myriam Lopez,
Agnieszka Krol and Casimir L. Sofeu
Maintainer: Virginie Rondeau <Virginie.Rondeau@inserm.fr>
Diff between frailtypack versions 3.0.3.1 dated 2019-03-04 and 3.0.3.2 dated 2019-05-16
frailtypack-3.0.3.1/frailtypack/vignettes/Package_summary.html |only frailtypack-3.0.3.2/frailtypack/DESCRIPTION | 10 frailtypack-3.0.3.2/frailtypack/MD5 | 565 frailtypack-3.0.3.2/frailtypack/NAMESPACE | 224 frailtypack-3.0.3.2/frailtypack/NEWS | 782 frailtypack-3.0.3.2/frailtypack/R/Cmeasures.R | 600 frailtypack-3.0.3.2/frailtypack/R/Diffepoce.R | 304 frailtypack-3.0.3.2/frailtypack/R/SurvIC.R | 194 frailtypack-3.0.3.2/frailtypack/R/additivePenal.R | 1754 +- frailtypack-3.0.3.2/frailtypack/R/cindexes.B.R | 156 frailtypack-3.0.3.2/frailtypack/R/cindexes.R | 148 frailtypack-3.0.3.2/frailtypack/R/cindexes.W.R | 84 frailtypack-3.0.3.2/frailtypack/R/cindexes.frailty.R | 162 frailtypack-3.0.3.2/frailtypack/R/cluster.R | 66 frailtypack-3.0.3.2/frailtypack/R/dataHelp.R | 676 frailtypack-3.0.3.2/frailtypack/R/epoce.R | 2880 +-- frailtypack-3.0.3.2/frailtypack/R/evalOpenMPFortran.R | 96 frailtypack-3.0.3.2/frailtypack/R/event2.R | 44 frailtypack-3.0.3.2/frailtypack/R/factor.names.R | 110 frailtypack-3.0.3.2/frailtypack/R/firstlib.R | 28 frailtypack-3.0.3.2/frailtypack/R/frailtyPenal.R | 7575 ++++----- frailtypack-3.0.3.2/frailtypack/R/frailtypack-package.R | 476 frailtypack-3.0.3.2/frailtypack/R/hazard.R | 310 frailtypack-3.0.3.2/frailtypack/R/integrant.R | 64 frailtypack-3.0.3.2/frailtypack/R/jointSurrSimul.R | 436 frailtypack-3.0.3.2/frailtypack/R/jointSurroKendall.R | 148 frailtypack-3.0.3.2/frailtypack/R/jointSurroPenal.R | 2304 +- frailtypack-3.0.3.2/frailtypack/R/jointSurroPenalSimul.R | 1458 - frailtypack-3.0.3.2/frailtypack/R/jointSurroTKendall.R | 358 frailtypack-3.0.3.2/frailtypack/R/kappa_val_croisee.r | 170 frailtypack-3.0.3.2/frailtypack/R/kendall_bootstrap.r | 42 frailtypack-3.0.3.2/frailtypack/R/lines.frailtyPenal.R | 76 frailtypack-3.0.3.2/frailtypack/R/longiPenal.R | 3390 ++-- frailtypack-3.0.3.2/frailtypack/R/loocv.R | 336 frailtypack-3.0.3.2/frailtypack/R/multivPenal.R | 3597 ++-- frailtypack-3.0.3.2/frailtypack/R/num.id.R | 90 frailtypack-3.0.3.2/frailtypack/R/plot.Diffepoce.R | 64 frailtypack-3.0.3.2/frailtypack/R/plot.epoce.R | 84 frailtypack-3.0.3.2/frailtypack/R/plot.frailtyPenal.R | 219 frailtypack-3.0.3.2/frailtypack/R/plot.jointNestedPenal.R | 463 frailtypack-3.0.3.2/frailtypack/R/plot.jointPenal.R | 474 frailtypack-3.0.3.2/frailtypack/R/plot.jointSurroPenal.R | 372 frailtypack-3.0.3.2/frailtypack/R/plot.longiPenal.R | 219 frailtypack-3.0.3.2/frailtypack/R/plot.multivPenal.R | 449 frailtypack-3.0.3.2/frailtypack/R/plot.nestedPenal.additivePenal.R | 275 frailtypack-3.0.3.2/frailtypack/R/plot.predFrailty.R | 170 frailtypack-3.0.3.2/frailtypack/R/plot.predJoint.R | 282 frailtypack-3.0.3.2/frailtypack/R/plot.predJointNested.R | 100 frailtypack-3.0.3.2/frailtypack/R/plot.predLongi.R | 122 frailtypack-3.0.3.2/frailtypack/R/plot.trivPenal.R | 451 frailtypack-3.0.3.2/frailtypack/R/plot.trivPenalNL.R | 451 frailtypack-3.0.3.2/frailtypack/R/predict.jointSurroPenal.R | 380 frailtypack-3.0.3.2/frailtypack/R/prediction.R | 6948 ++++---- frailtypack-3.0.3.2/frailtypack/R/print.Cmeasures.R | 342 frailtypack-3.0.3.2/frailtypack/R/print.Diffepoce.R | 38 frailtypack-3.0.3.2/frailtypack/R/print.additivePenal.R | 508 frailtypack-3.0.3.2/frailtypack/R/print.epoce.R | 46 frailtypack-3.0.3.2/frailtypack/R/print.frailtyPenal.R | 664 frailtypack-3.0.3.2/frailtypack/R/print.jointNestedPenal.R | 470 frailtypack-3.0.3.2/frailtypack/R/print.jointPenal.R | 780 frailtypack-3.0.3.2/frailtypack/R/print.longiPenal.R | 780 frailtypack-3.0.3.2/frailtypack/R/print.multivPenal.R | 650 frailtypack-3.0.3.2/frailtypack/R/print.nestedPenal.R | 488 frailtypack-3.0.3.2/frailtypack/R/print.predFrailty.R | 44 frailtypack-3.0.3.2/frailtypack/R/print.predJoint.R | 116 frailtypack-3.0.3.2/frailtypack/R/print.predJointNested.R | 30 frailtypack-3.0.3.2/frailtypack/R/print.predLongi.R | 40 frailtypack-3.0.3.2/frailtypack/R/print.trivPenal.R | 952 - frailtypack-3.0.3.2/frailtypack/R/print.trivPenalNL.R | 1050 - frailtypack-3.0.3.2/frailtypack/R/slope.R | 108 frailtypack-3.0.3.2/frailtypack/R/statFP.R | 116 frailtypack-3.0.3.2/frailtypack/R/ste.R | 386 frailtypack-3.0.3.2/frailtypack/R/subcluster.R | 90 frailtypack-3.0.3.2/frailtypack/R/summary.additivePenal.R | 168 frailtypack-3.0.3.2/frailtypack/R/summary.frailtyPenal.R | 212 frailtypack-3.0.3.2/frailtypack/R/summary.jointNestedPenal.R | 208 frailtypack-3.0.3.2/frailtypack/R/summary.jointPenal.R | 198 frailtypack-3.0.3.2/frailtypack/R/summary.jointSurroPenal.R | 362 frailtypack-3.0.3.2/frailtypack/R/summary.jointSurroPenalSimul.R | 190 frailtypack-3.0.3.2/frailtypack/R/summary.longiPenal.R | 280 frailtypack-3.0.3.2/frailtypack/R/summary.multivPenal.R | 172 frailtypack-3.0.3.2/frailtypack/R/summary.nestedPenal.R | 168 frailtypack-3.0.3.2/frailtypack/R/summary.trivPenal.R | 294 frailtypack-3.0.3.2/frailtypack/R/summary.trivPenalNL.R | 364 frailtypack-3.0.3.2/frailtypack/R/survival.R | 264 frailtypack-3.0.3.2/frailtypack/R/synthese_result_modele_reduit.r | 368 frailtypack-3.0.3.2/frailtypack/R/terminal.R | 42 frailtypack-3.0.3.2/frailtypack/R/test.R | 48 frailtypack-3.0.3.2/frailtypack/R/testOpenMPFortran.R | 82 frailtypack-3.0.3.2/frailtypack/R/timedep.R | 184 frailtypack-3.0.3.2/frailtypack/R/timedep.names.R | 14 frailtypack-3.0.3.2/frailtypack/R/transfo.table.R | 184 frailtypack-3.0.3.2/frailtypack/R/trivPenal.R | 4319 ++--- frailtypack-3.0.3.2/frailtypack/R/trivPenalNL.R | 5717 +++---- frailtypack-3.0.3.2/frailtypack/R/waldtest.R | 114 frailtypack-3.0.3.2/frailtypack/R/wts.R | 70 frailtypack-3.0.3.2/frailtypack/THANKS | 8 frailtypack-3.0.3.2/frailtypack/build/vignette.rds |binary frailtypack-3.0.3.2/frailtypack/demo/00Index | 14 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_additivePenal.R | 92 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_frailtyPenal.R | 174 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_jointPenal.R | 186 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_jointSurroPenal.R | 116 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_jointSurroPenalSimul.R | 54 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_multivPenal.R | 74 frailtypack-3.0.3.2/frailtypack/demo/frailtypack_nestedPenal.R | 64 frailtypack-3.0.3.2/frailtypack/inst/CITATION | 196 frailtypack-3.0.3.2/frailtypack/inst/doc/Package_summary.Rmd | 133 frailtypack-3.0.3.2/frailtypack/inst/doc/Package_summary.html | 1410 - frailtypack-3.0.3.2/frailtypack/man/Cmeasures.Rd | 304 frailtypack-3.0.3.2/frailtypack/man/Diffepoce.Rd | 262 frailtypack-3.0.3.2/frailtypack/man/SurvIC.Rd | 118 frailtypack-3.0.3.2/frailtypack/man/additivePenal.Rd | 514 frailtypack-3.0.3.2/frailtypack/man/bcos.Rd | 56 frailtypack-3.0.3.2/frailtypack/man/cluster.Rd | 80 frailtypack-3.0.3.2/frailtypack/man/colorectal.Rd | 92 frailtypack-3.0.3.2/frailtypack/man/colorectalLongi.Rd | 90 frailtypack-3.0.3.2/frailtypack/man/dataAdditive.Rd | 64 frailtypack-3.0.3.2/frailtypack/man/dataMultiv.Rd | 54 frailtypack-3.0.3.2/frailtypack/man/dataNCC.Rd | 48 frailtypack-3.0.3.2/frailtypack/man/dataNested.Rd | 68 frailtypack-3.0.3.2/frailtypack/man/dataOvarian.Rd | 72 frailtypack-3.0.3.2/frailtypack/man/epoce.Rd | 382 frailtypack-3.0.3.2/frailtypack/man/event2.Rd | 56 frailtypack-3.0.3.2/frailtypack/man/frailtyPenal.Rd | 1978 +- frailtypack-3.0.3.2/frailtypack/man/frailtypack-package.Rd | 424 frailtypack-3.0.3.2/frailtypack/man/gastadj.Rd | 80 frailtypack-3.0.3.2/frailtypack/man/hazard.Rd | 74 frailtypack-3.0.3.2/frailtypack/man/jointSurrSimul.Rd | 288 frailtypack-3.0.3.2/frailtypack/man/jointSurroPenal.Rd | 1034 - 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frailtypack-3.0.3.2/frailtypack/man/trivPenalNL.Rd | 1050 - frailtypack-3.0.3.2/frailtypack/man/wts.Rd | 84 frailtypack-3.0.3.2/frailtypack/src/Adonnees.f90 | 308 frailtypack-3.0.3.2/frailtypack/src/AparamMultive.f90 | 284 frailtypack-3.0.3.2/frailtypack/src/Aparameters.f90 | 750 frailtypack-3.0.3.2/frailtypack/src/Integrale_mult_scl.f90 | 6846 ++++---- frailtypack-3.0.3.2/frailtypack/src/Integrant_scl.f90 | 2750 +-- frailtypack-3.0.3.2/frailtypack/src/Pour_Adaptative.f90 | 678 frailtypack-3.0.3.2/frailtypack/src/aGhermite.f90 | 518 frailtypack-3.0.3.2/frailtypack/src/aaOptim.f90 | 4353 ++--- frailtypack-3.0.3.2/frailtypack/src/aaOptim_New_scl.f90 | 2170 +- frailtypack-3.0.3.2/frailtypack/src/aaOptim_New_scl2.f90 | 2210 +- frailtypack-3.0.3.2/frailtypack/src/aaOptim_SCL_0.f90 | 2176 +- frailtypack-3.0.3.2/frailtypack/src/aaOptimres.f90 | 1676 +- frailtypack-3.0.3.2/frailtypack/src/aaUseFunction.f90 | 2400 +-- frailtypack-3.0.3.2/frailtypack/src/aaUseFunctionG.f90 | 766 frailtypack-3.0.3.2/frailtypack/src/aamarq98o.f90 | 930 - frailtypack-3.0.3.2/frailtypack/src/additive.f90 | 4856 +++--- frailtypack-3.0.3.2/frailtypack/src/afuncpasres.f90 | 2806 +-- frailtypack-3.0.3.2/frailtypack/src/ahrmsym.f90 | 2994 +-- frailtypack-3.0.3.2/frailtypack/src/aresidusMartingale.f90 | 2876 +-- frailtypack-3.0.3.2/frailtypack/src/autres_fonctions.f90 | 7140 ++++----- frailtypack-3.0.3.2/frailtypack/src/distance.f90 | 6912 ++++---- frailtypack-3.0.3.2/frailtypack/src/epoce.f90 | 1498 - frailtypack-3.0.3.2/frailtypack/src/epoce_log.f90 | 1538 - frailtypack-3.0.3.2/frailtypack/src/epoce_long.f90 | 5868 +++---- frailtypack-3.0.3.2/frailtypack/src/epoce_long_nl.f90 | 2658 +-- frailtypack-3.0.3.2/frailtypack/src/frailtypack.f90 | 5477 +++--- frailtypack-3.0.3.2/frailtypack/src/funcpaG_tps.f90 | 706 frailtypack-3.0.3.2/frailtypack/src/funcpaGcpm.f90 | 908 - frailtypack-3.0.3.2/frailtypack/src/funcpaGcpm_intcens.f90 | 996 - frailtypack-3.0.3.2/frailtypack/src/funcpaGcpm_log.f90 | 856 - frailtypack-3.0.3.2/frailtypack/src/funcpaGsplines.f90 | 860 - frailtypack-3.0.3.2/frailtypack/src/funcpaGsplines_intcens.f90 | 854 - frailtypack-3.0.3.2/frailtypack/src/funcpaGsplines_log.f90 | 874 - frailtypack-3.0.3.2/frailtypack/src/funcpaGweib.f90 | 662 frailtypack-3.0.3.2/frailtypack/src/funcpaGweib_intcens.f90 | 670 frailtypack-3.0.3.2/frailtypack/src/funcpaGweib_log.f90 | 666 frailtypack-3.0.3.2/frailtypack/src/funcpaMultivCpm.f90 | 690 frailtypack-3.0.3.2/frailtypack/src/funcpaMultivSplines.f90 | 1150 - frailtypack-3.0.3.2/frailtypack/src/funcpaMultivWeib.f90 | 498 frailtypack-3.0.3.2/frailtypack/src/funcpa_adaptative.f90 | 538 frailtypack-3.0.3.2/frailtypack/src/funcpa_laplace.f90 | 750 frailtypack-3.0.3.2/frailtypack/src/funcpaacpm.f90 | 1374 - frailtypack-3.0.3.2/frailtypack/src/funcpaasplines.f90 | 1348 - frailtypack-3.0.3.2/frailtypack/src/funcpaaweib.f90 | 1122 - frailtypack-3.0.3.2/frailtypack/src/funcpaj_tps.f90 | 882 - frailtypack-3.0.3.2/frailtypack/src/funcpajcpm.f90 | 546 frailtypack-3.0.3.2/frailtypack/src/funcpajcpm_log.f90 | 548 frailtypack-3.0.3.2/frailtypack/src/funcpajgeneral.f90 | 676 frailtypack-3.0.3.2/frailtypack/src/funcpajlongisplines.f90 | 1718 +- frailtypack-3.0.3.2/frailtypack/src/funcpajlongisplines_nl.f90 | 1902 +- frailtypack-3.0.3.2/frailtypack/src/funcpajlongiweib.f90 | 1442 - frailtypack-3.0.3.2/frailtypack/src/funcpajlongiweib_nl.f90 | 1282 - frailtypack-3.0.3.2/frailtypack/src/funcpajsplines.f90 | 738 frailtypack-3.0.3.2/frailtypack/src/funcpajsplinesIndiv.f90 | 660 frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_fam.f90 | 888 - frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_intcens.f90 | 662 frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_log.f90 | 732 frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_logIndiv.f90 | 666 frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_surrogate_scl_1.f90 | 1130 - frailtypack-3.0.3.2/frailtypack/src/funcpajsplines_surrogate_scl_2.f90 | 3130 +-- frailtypack-3.0.3.2/frailtypack/src/funcpajweib.f90 | 460 frailtypack-3.0.3.2/frailtypack/src/funcpajweib_fam.f90 | 436 frailtypack-3.0.3.2/frailtypack/src/funcpajweib_intcens.f90 | 458 frailtypack-3.0.3.2/frailtypack/src/funcpajweib_log.f90 | 466 frailtypack-3.0.3.2/frailtypack/src/funcpalongi_uni.f90 | 738 frailtypack-3.0.3.2/frailtypack/src/funcpancpm.f90 | 1164 - frailtypack-3.0.3.2/frailtypack/src/funcpansplines.f90 | 1244 - frailtypack-3.0.3.2/frailtypack/src/funcpanweib.f90 | 814 - frailtypack-3.0.3.2/frailtypack/src/funcpas_tps.f90 | 850 - frailtypack-3.0.3.2/frailtypack/src/funcpascpm.f90 | 660 frailtypack-3.0.3.2/frailtypack/src/funcpascpm_intcens.f90 | 654 frailtypack-3.0.3.2/frailtypack/src/funcpascpm_log.f90 | 616 frailtypack-3.0.3.2/frailtypack/src/funcpassplines.f90 | 622 frailtypack-3.0.3.2/frailtypack/src/funcpassplines_intcens.f90 | 744 frailtypack-3.0.3.2/frailtypack/src/funcpassplines_log.f90 | 638 frailtypack-3.0.3.2/frailtypack/src/funcpasweib.f90 | 468 frailtypack-3.0.3.2/frailtypack/src/funcpasweib_intcens.f90 | 562 frailtypack-3.0.3.2/frailtypack/src/funcpasweib_log.f90 | 508 frailtypack-3.0.3.2/frailtypack/src/joint.f90 | 6990 ++++---- frailtypack-3.0.3.2/frailtypack/src/jointSurrogate.f90 | 7898 +++++----- frailtypack-3.0.3.2/frailtypack/src/joint_longi.f90 | 7750 ++++----- frailtypack-3.0.3.2/frailtypack/src/joint_longi_nl.f90 | 7710 ++++----- frailtypack-3.0.3.2/frailtypack/src/joint_surrogate.f90 | 5662 +++---- frailtypack-3.0.3.2/frailtypack/src/jointsurrokendall.f90 | 214 frailtypack-3.0.3.2/frailtypack/src/longi_uni_nl.f90 | 4668 ++--- frailtypack-3.0.3.2/frailtypack/src/multiveJoint.f90 | 4678 ++--- frailtypack-3.0.3.2/frailtypack/src/nested.f90 | 5328 +++--- frailtypack-3.0.3.2/frailtypack/src/prediction.f90 | 2522 +-- frailtypack-3.0.3.2/frailtypack/src/prediction_Recurr_Sha.f90 | 428 frailtypack-3.0.3.2/frailtypack/src/prediction_biv.f90 | 2544 +-- frailtypack-3.0.3.2/frailtypack/src/prediction_sha_logn.f90 | 452 frailtypack-3.0.3.2/frailtypack/src/prediction_tri.f90 | 2828 +-- frailtypack-3.0.3.2/frailtypack/src/prediction_tri_nl.f90 | 7746 ++++----- frailtypack-3.0.3.2/frailtypack/src/predictionfam.f90 | 1180 - frailtypack-3.0.3.2/frailtypack/src/risque.f90 | 260 frailtypack-3.0.3.2/frailtypack/src/somme.f90 | 104 frailtypack-3.0.3.2/frailtypack/src/surrosim.f90 | 86 frailtypack-3.0.3.2/frailtypack/src/survival.f90 | 1070 - frailtypack-3.0.3.2/frailtypack/src/test.f90 | 32 frailtypack-3.0.3.2/frailtypack/vignettes/Package_summary.Rmd | 133 284 files changed, 136321 insertions(+), 135862 deletions(-)
Title: Bayesian Age-Period-Cohort Modeling and Prediction
Description: Bayesian Age-Period-Cohort Modeling and Prediction using efficient Markov Chain Monte Carlo Methods. This is the R version of the previous BAMP software as described in Volker Schmid and Leonhard Held (2007) <DOI:10.18637/jss.v021.i08> Bayesian Age-Period-Cohort Modeling and Prediction - BAMP, Journal of Statistical Software 21:8. This package includes checks of convergence using Gelman's R.
Author: Volker Schmid [aut, cre],
Florian Geressen [ctb],
Leonhard Held [ctb],
Evi Rainer [ctb]
Maintainer: Volker Schmid <volker.schmid@lmu.de>
Diff between bamp versions 2.0.6 dated 2019-01-08 and 2.0.7 dated 2019-05-16
DESCRIPTION | 8 - MD5 | 13 +- NEWS.md | 3 R/bamp.R | 6 R/zzz.R |only build/vignette.rds |binary inst/doc/bamp.html | 341 ++++++++++++++++++++++++++++++++++++++++++----------- src/bamp.cc | 75 ++++++----- 8 files changed, 337 insertions(+), 109 deletions(-)
Title: Simple Animated Plots for R
Description: Simple animated versions of basic R plots, using the 'animation'
package. Includes animated versions of plot, barplot, persp, contour,
filled.contour, hist, curve, points, lines, text, symbols, segments, and
arrows.
Author: David Hugh-Jones <davidhughjones@gmail.com>
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between anim.plots versions 0.2 dated 2017-05-14 and 0.2.1 dated 2019-05-16
anim.plots-0.2.1/anim.plots/DESCRIPTION | 10 anim.plots-0.2.1/anim.plots/MD5 | 28 - anim.plots-0.2.1/anim.plots/NEWS.md |only anim.plots-0.2.1/anim.plots/R/anim.plots.R | 4 anim.plots-0.2.1/anim.plots/build/vignette.rds |binary anim.plots-0.2.1/anim.plots/inst/doc/anim.plots-stub.R | 4 anim.plots-0.2.1/anim.plots/inst/doc/anim.plots-stub.Rmd | 7 anim.plots-0.2.1/anim.plots/inst/doc/anim.plots-stub.html | 288 +++++++++++++- anim.plots-0.2.1/anim.plots/man/anim.barplot.Rd | 5 anim.plots-0.2.1/anim.plots/man/anim.contour.Rd | 5 anim.plots-0.2.1/anim.plots/man/anim.plot.Rd | 16 anim.plots-0.2.1/anim.plots/man/anim.plots-package.Rd | 5 anim.plots-0.2.1/anim.plots/man/anim.save.Rd | 4 anim.plots-0.2.1/anim.plots/man/anim.segments.Rd | 7 anim.plots-0.2.1/anim.plots/vignettes/anim.plots-stub.Rmd | 7 anim.plots-0.2/anim.plots/inst/doc/anim.plots.Rmd |only 16 files changed, 331 insertions(+), 59 deletions(-)
Title: Joint Frailty-Copula Models for Tumour Progression and Death in
Meta-Analysis
Description: Perform likelihood estimation and dynamic prediction under
joint frailty-copula models for tumour progression and death in meta-analysis.
A penalized likelihood method is employed for estimating model parameters, where the baseline hazard functions are modeled by smoothing splines.
The methods are applicable for meta-analytic data combining several studies.
The methods can analyze data having information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
See Emura et al. (2017) <doi:10.1177/0962280215604510> for likelihood estimation, and
Emura et al. (2018) <doi:10.1177/0962280216688032> for dynamic prediction.
Survival data from ovarian cancer patients are also available.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 3.1 dated 2019-01-03 and 3.2 dated 2019-05-16
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- man/F.KM.Rd | 4 ++-- man/F.prediction.Rd | 18 ++++++++++-------- man/F.window.Rd | 14 +++++++------- man/F.window.Weibull.Rd | 14 +++++++------- man/F.windows.Rd | 10 +++++----- man/F.windows.Weibull.Rd | 14 +++++++------- man/I.spline.Rd | 4 ++-- man/M.spline.Rd | 4 ++-- man/cmprskCox.reg.Rd | 4 ++-- man/joint.Cox-package.Rd | 10 +++++----- man/jointCox.indep.reg.Rd | 4 ++-- man/jointCox.reg.Rd | 6 +++--- man/splineCox.reg.Rd | 2 +- 15 files changed, 74 insertions(+), 72 deletions(-)
Title: Instrumental Variables: Extrapolation by Marginal Treatment
Effects
Description: The marginal treatment effect was introduced by Heckman and
Vytlacil (2005) <doi:10.1111/j.1468-0262.2005.00594.x> to provide a
choice-theoretic interpretation to instrumental variables models that
maintain the monotonicity condition of Imbens and Angrist (1994)
<doi:10.2307/2951620>. This interpretation can be used to extrapolate from
the compliers to estimate treatment effects for other subpopulations. This
package provides a flexible set of methods for conducting this
extrapolation. It allows for parametric or nonparametric sieve estimation,
and allows the user to maintain shape restrictions such as monotonicity. The
package operates in the general framework developed by Mogstad, Santos and
Torgovitsky (2018) <doi:10.3982/ECTA15463>, and accommodates either point
identification or partial identification (bounds). In the partially
identified case, bounds are computed using linear programming. Support for
three linear programming solvers is provided. Gurobi and the Gurobi R API
can be obtained from <http://www.gurobi.com/index>. CPLEX can be obtained
from <https://www.ibm.com/analytics/cplex-optimizer>. CPLEX R APIs 'Rcplex'
and 'cplexAPI' are available from CRAN. The lp_solve library is freely
available from <http://lpsolve.sourceforge.net/5.5/>, and is included when
installing either of its R APIs, 'lpSolve' or 'lpSolveAPI', which are
available from CRAN.
Author: Alexander Torgovitsky [aut],
Joshua Shea [aut, cre]
Maintainer: Joshua Shea <jkcshea@uchicago.edu>
Diff between ivmte versions 1.0.0 dated 2019-02-08 and 1.0.1 dated 2019-05-16
ivmte-1.0.0/ivmte/man/fglsEstimate.Rd |only ivmte-1.0.0/ivmte/man/uSplinesBasis.Rd |only ivmte-1.0.0/ivmte/man/uSplinesInt.Rd |only ivmte-1.0.1/ivmte/DESCRIPTION | 6 ivmte-1.0.1/ivmte/MD5 | 75 ivmte-1.0.1/ivmte/NAMESPACE | 2 ivmte-1.0.1/ivmte/R/audit.R | 178 +- ivmte-1.0.1/ivmte/R/aux_callcheck.R | 18 ivmte-1.0.1/ivmte/R/aux_monobound.R | 2 ivmte-1.0.1/ivmte/R/data.R | 6 ivmte-1.0.1/ivmte/R/ivlike.R | 85 - ivmte-1.0.1/ivmte/R/lists.R | 11 ivmte-1.0.1/ivmte/R/lp.R | 44 ivmte-1.0.1/ivmte/R/monobound.R | 8 ivmte-1.0.1/ivmte/R/mst.R | 1758 ++++++++++----------- ivmte-1.0.1/ivmte/R/mtr.R | 169 +- ivmte-1.0.1/ivmte/R/propensity.R | 5 ivmte-1.0.1/ivmte/R/splines.R | 22 ivmte-1.0.1/ivmte/R/sweights.R | 180 +- ivmte-1.0.1/ivmte/R/wweights.R | 100 - ivmte-1.0.1/ivmte/data/vignetteResult.rda |only ivmte-1.0.1/ivmte/man/audit.Rd | 12 ivmte-1.0.1/ivmte/man/fmtResult.Rd |only ivmte-1.0.1/ivmte/man/getXZ.Rd | 16 ivmte-1.0.1/ivmte/man/gmmEstimate.Rd |only ivmte-1.0.1/ivmte/man/ivEstimate.Rd | 7 ivmte-1.0.1/ivmte/man/ivj.Rd | 6 ivmte-1.0.1/ivmte/man/ivmte.Rd | 103 - ivmte-1.0.1/ivmte/man/ivmteEstimate.Rd | 43 ivmte-1.0.1/ivmte/man/l.Rd | 11 ivmte-1.0.1/ivmte/man/maxminmatch.Rd | 2 ivmte-1.0.1/ivmte/man/olsj.Rd | 6 ivmte-1.0.1/ivmte/man/polyparse.Rd | 2 ivmte-1.0.1/ivmte/man/removeSplines.Rd | 25 ivmte-1.0.1/ivmte/man/restring.Rd | 6 ivmte-1.0.1/ivmte/man/tsls.Rd | 6 ivmte-1.0.1/ivmte/man/uSplineBasis.Rd |only ivmte-1.0.1/ivmte/man/uSplineInt.Rd |only ivmte-1.0.1/ivmte/man/vignetteResult.Rd |only ivmte-1.0.1/ivmte/man/wlate1.Rd | 4 ivmte-1.0.1/ivmte/tests/testthat/test_covariates.R | 3 ivmte-1.0.1/ivmte/tests/testthat/test_single.R | 3 ivmte-1.0.1/ivmte/tests/testthat/test_splines.R | 6 43 files changed, 1639 insertions(+), 1291 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files. In
addition, various risk estimation methods are included. Note that the package
includes a graphical user interface that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre],
Bernhard Meindl [aut],
Alexander Kowarik [aut] (<https://orcid.org/0000-0001-8598-4130>)
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.3.0 dated 2018-05-16 and 5.4.0 dated 2019-05-16
sdcMicro-5.3.0/sdcMicro/tests/microaggregation_test.R |only sdcMicro-5.4.0/sdcMicro/DESCRIPTION | 33 - sdcMicro-5.4.0/sdcMicro/MD5 | 122 ++--- sdcMicro-5.4.0/sdcMicro/NAMESPACE | 4 sdcMicro-5.4.0/sdcMicro/R/GUIfunctions.R | 4 sdcMicro-5.4.0/sdcMicro/R/addGhostVars.R | 2 sdcMicro-5.4.0/sdcMicro/R/addNoise.r | 26 - sdcMicro-5.4.0/sdcMicro/R/aux_functions.r | 32 + sdcMicro-5.4.0/sdcMicro/R/dUtility.R | 7 sdcMicro-5.4.0/sdcMicro/R/freqCalc.r | 4 sdcMicro-5.4.0/sdcMicro/R/globalRecode.R | 5 sdcMicro-5.4.0/sdcMicro/R/groupAndRename.R | 8 sdcMicro-5.4.0/sdcMicro/R/localSupp.R | 8 sdcMicro-5.4.0/sdcMicro/R/localSuppression.R | 2 sdcMicro-5.4.0/sdcMicro/R/mafast.R | 2 sdcMicro-5.4.0/sdcMicro/R/measure_risk.R | 42 + sdcMicro-5.4.0/sdcMicro/R/microaggregation.R | 9 sdcMicro-5.4.0/sdcMicro/R/mvTopCoding.R |only sdcMicro-5.4.0/sdcMicro/R/plotFunctions.R | 8 sdcMicro-5.4.0/sdcMicro/R/printFunctions.R | 2 sdcMicro-5.4.0/sdcMicro/R/show_sdcMicroObj.R | 2 sdcMicro-5.4.0/sdcMicro/build/partial.rdb |binary sdcMicro-5.4.0/sdcMicro/build/vignette.rds |binary sdcMicro-5.4.0/sdcMicro/data/CASCrefmicrodata.rda |binary sdcMicro-5.4.0/sdcMicro/data/EIA.rda |binary sdcMicro-5.4.0/sdcMicro/data/Tarragona.rda |binary sdcMicro-5.4.0/sdcMicro/data/casc1.rda |binary sdcMicro-5.4.0/sdcMicro/data/francdat.rda |binary sdcMicro-5.4.0/sdcMicro/data/free1.rda |binary sdcMicro-5.4.0/sdcMicro/data/microData.rda |binary sdcMicro-5.4.0/sdcMicro/data/testdata.RData |binary sdcMicro-5.4.0/sdcMicro/data/testdata2.RData |binary sdcMicro-5.4.0/sdcMicro/inst/doc/sdcMicro.Rmd | 38 - sdcMicro-5.4.0/sdcMicro/inst/doc/sdcMicro.html | 211 +++++++++- sdcMicro-5.4.0/sdcMicro/inst/doc/sdc_guidelines.pdf |binary sdcMicro-5.4.0/sdcMicro/inst/shiny/sdcApp/controllers/ui_categorical.R | 23 - sdcMicro-5.4.0/sdcMicro/inst/shiny/sdcApp/controllers/ui_continuous.R | 18 sdcMicro-5.4.0/sdcMicro/inst/shiny/sdcApp/controllers/ui_results_numerical.R | 2 sdcMicro-5.4.0/sdcMicro/inst/shiny/sdcApp/controllers/ui_setup_sdc.R | 6 sdcMicro-5.4.0/sdcMicro/inst/shiny/sdcApp/server.R | 4 sdcMicro-5.4.0/sdcMicro/man/LocalRecProg.Rd | 6 sdcMicro-5.4.0/sdcMicro/man/addGhostVars.Rd | 2 sdcMicro-5.4.0/sdcMicro/man/addNoise.Rd | 11 sdcMicro-5.4.0/sdcMicro/man/dUtility.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/extractManipData.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/freq.Rd | 3 sdcMicro-5.4.0/sdcMicro/man/freqCalc.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/globalRecode.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/groupAndRename.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/kAnon_violations.Rd | 3 sdcMicro-5.4.0/sdcMicro/man/localSupp.Rd | 8 sdcMicro-5.4.0/sdcMicro/man/localSuppression.Rd | 2 sdcMicro-5.4.0/sdcMicro/man/measure_risk.Rd | 3 sdcMicro-5.4.0/sdcMicro/man/microaggregation.Rd | 12 sdcMicro-5.4.0/sdcMicro/man/mvTopCoding.Rd |only sdcMicro-5.4.0/sdcMicro/man/plot.sdcMicroObj.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/readMicrodata.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/sdcMicroObj-class.Rd | 22 - sdcMicro-5.4.0/sdcMicro/man/show-sdcMicroObj-method.Rd | 3 sdcMicro-5.4.0/sdcMicro/man/shuffle.Rd | 4 sdcMicro-5.4.0/sdcMicro/man/valTable.Rd | 4 sdcMicro-5.4.0/sdcMicro/src/rankSwap.cpp | 12 sdcMicro-5.4.0/sdcMicro/tests/testthat/microaggregation_test.R |only sdcMicro-5.4.0/sdcMicro/vignettes/sdcMicro.Rmd | 38 - 64 files changed, 559 insertions(+), 226 deletions(-)
Title: Linear Regression with Non-Constant Variances
Description: Runs a linear-like regression with in which both the expected value and the variance can vary per observation. The expected values mu follows the standard linear model mu = X_mu * beta_mu. The standard deviation sigma follows the model log(sigma) = X_sigma * beta_sigma. The package comes with two vignettes: 'Intro' gives an introduction, 'Math' gives mathematical details.
Author: Posthuma Partners <info@posthuma-partners.nl>
Maintainer: Marco Nijmeijer <nijmeijer@posthuma-partners.nl>
Diff between lmvar versions 1.5.1 dated 2019-03-15 and 1.5.2 dated 2019-05-16
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 5 build/vignette.rds |binary inst/doc/Intro.html | 451 ++++++++++++++++++++++++++++++++------------ inst/doc/Math.pdf |binary tests/testthat/test_lmvar.R | 39 +++ 7 files changed, 373 insertions(+), 140 deletions(-)
Title: Robust Estimation and Inference in Sample Selection Models
Description: Package provides a set of tools for robust estimation and inference for models with sample selectivity.
Author: Mikhail Zhelonkin, Marc G. Genton, Elvezio Ronchetti
Maintainer: Mikhail Zhelonkin <Mikhail.Zhelonkin@gmail.com>
Diff between ssmrob versions 0.5 dated 2018-12-09 and 0.6 dated 2019-05-16
DESCRIPTION | 11 - MD5 | 109 ++++++++--------- NAMESPACE | 57 ++++----- NEWS |only R/PsiMest.R | 2 R/etreg2steprobVcov.R | 2 R/etregrob.R | 4 R/heck2steprobVcov.R | 12 - R/heck5twosteprobVcov.R | 4 R/heckit5rob.R | 22 +-- R/heckitrob.R | 16 +- R/ssmrob-internal.R | 251 ++++++++++++++++++++-------------------- R/ssmrob.R | 10 - R/summary.etregrob.R | 2 R/summary.heckitrob.R | 2 R/x2weight.covMcd.R | 1 R/x2weight.robCov.R | 1 data/MEPS2001.rda |binary data/MROZ.RAW.rda |binary man/MEPS2001.Rd | 104 ++++++++-------- man/MROZ.RAW.Rd | 108 ++++++++--------- man/MmatrM.Rd | 138 ++++++++++----------- man/PsiMest.Rd | 8 - man/coef.etregrob.Rd | 2 man/coef.heckit5rob.Rd | 106 ++++++++-------- man/coef.heckitrob.Rd | 104 ++++++++-------- man/dLambdadSM.Rd | 126 ++++++++++---------- man/dLambdadSM5.Rd | 82 ++++++------- man/etregrob.Rd | 50 +++++-- man/fitted.etregrob.Rd | 4 man/fitted.heckit5rob.Rd | 132 ++++++++++----------- man/fitted.heckitrob.Rd | 114 +++++++++--------- man/heck2steprobVcov.Rd | 166 +++++++++++++------------- man/heck5twosteprobVcov.Rd | 168 +++++++++++++------------- man/heckit5rob.Rd | 50 +++++-- man/heckitrob.Rd | 28 ++-- man/heckitrob.control.Rd | 142 +++++++++++----------- man/print.etregrob.Rd | 4 man/print.heckit5rob.Rd | 4 man/print.heckitrob.Rd | 4 man/print.summary.etregrob.Rd | 4 man/print.summary.heckit5rob.Rd | 4 man/print.summary.heckitrob.Rd | 4 man/residuals.etregrob.Rd | 4 man/residuals.heckit5rob.Rd | 78 ++++++------ man/residuals.heckitrob.Rd | 6 man/ssmrob-package.Rd | 20 ++- man/ssmrob.Rd | 54 +++++--- man/summary.etregrob.Rd | 2 man/summary.heckit5rob.Rd | 106 ++++++++-------- man/summary.heckitrob.Rd | 110 ++++++++--------- man/vcov.etregrob.Rd | 2 man/vcov.heckit5rob.Rd | 104 ++++++++-------- man/vcov.heckitrob.Rd | 2 man/x2weight.covMcd.Rd | 90 +++++++------- man/x2weight.robCov.Rd | 92 +++++++------- 56 files changed, 1451 insertions(+), 1381 deletions(-)
Title: Calculations and Visualisations Related to Geometric
Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph],
Gregory Jefferis [ctb],
Dryden Ian [cph]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Morpho versions 2.6 dated 2018-04-23 and 2.7 dated 2019-05-16
DESCRIPTION | 10 MD5 | 104 ++++---- NAMESPACE | 1 R/Morpho-package.R | 4 R/check.lm.r | 225 +++++++++-------- R/classify.r | 5 R/deformGrid2d.r | 26 -- R/mergeMeshes.r | 5 R/meshDist.r | 4 R/meshDistZExport.r | 3 R/place.patch.r | 588 +++++++++++++++++++++++----------------------- R/pls2B.r | 4 R/read.pts.r | 5 R/rotaxis.r | 8 R/slider3d.r | 116 +++++---- R/warpmovie.matrix.r | 22 - R/warpmovie.r | 62 ++-- R/write.pts.r | 5 inst/NEWS.Rd | 22 + man/Morpho-package.Rd | 4 man/applyTransform.Rd | 10 man/checkLM.Rd | 8 man/covDist.Rd | 4 man/createAtlas.Rd | 4 man/deformGrid2d.Rd | 2 man/deformGrid3d.Rd | 8 man/equidistantCurve.Rd | 4 man/getOuterViewpoints.Rd | 4 man/histGroup.Rd | 6 man/icpmat.Rd | 4 man/lineplot.Rd | 3 man/meshDist.Rd | 14 - man/mirror.Rd | 8 man/mirror2plane.Rd | 6 man/pcaplot3d.Rd | 11 man/permuvec.Rd | 4 man/plot.slider3d.Rd | 4 man/plotAtlas.Rd | 4 man/plsCoVar.Rd | 4 man/ply2mesh.Rd | 4 man/prcompfast.Rd | 4 man/procSym.Rd | 7 man/projRead.Rd | 3 man/ray2mesh.Rd | 4 man/read.csv.folder.Rd | 3 man/relaxLM.Rd | 13 - man/render.Rd | 8 man/retroDeformMesh.Rd | 4 man/slider2d.Rd | 4 man/slider3d.Rd | 11 man/typprob.Rd | 3 man/warpmovie3d.Rd | 27 +- man/write.pts.Rd | 4 53 files changed, 750 insertions(+), 684 deletions(-)
Title: Fixed Effects Nonlinear Maximum Likelihood Models
Description: Efficient estimation of maximum likelihood models with multiple fixed-effects. Standard-errors can easily and flexibly be clustered and estimations exported.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between FENmlm versions 2.4.1 dated 2019-02-25 and 2.4.2 dated 2019-05-16
DESCRIPTION | 10 +- MD5 | 26 +++---- R/MiscFuns.R | 18 +---- R/femlm.R | 8 +- data/trade.RData |binary inst/NEWS.Rd | 20 +++++ inst/doc/FENmlm.Rmd | 2 inst/doc/FENmlm.html | 179 +++++++++++++++++++++++++------------------------- man/BIC.femlm.Rd | 2 man/femlm.Rd | 4 - man/trade.Rd | 2 src/convergence.cpp | 152 +++++++++++++++++++++--------------------- src/parallel_funs.cpp | 2 vignettes/FENmlm.Rmd | 2 14 files changed, 225 insertions(+), 202 deletions(-)
Title: The Hyperdirichlet Distribution, Mark 2
Description: A suite of routines for the hyperdirichlet distribution; supersedes the 'hyperdirichlet' package.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyper2 versions 1.0-6 dated 2019-04-02 and 1.0-7 dated 2019-05-16
hyper2-1.0-6/hyper2/inst/doc/skating_analysis.R |only hyper2-1.0-6/hyper2/inst/doc/skating_analysis.Rmd |only hyper2-1.0-6/hyper2/inst/doc/skating_analysis.html |only hyper2-1.0-6/hyper2/inst/formula1.png |only hyper2-1.0-6/hyper2/vignettes/skating_analysis.Rmd |only hyper2-1.0-7/hyper2/DESCRIPTION | 9 hyper2-1.0-7/hyper2/MD5 | 89 ++--- hyper2-1.0-7/hyper2/R/hyper2.R | 17 - hyper2-1.0-7/hyper2/build/partial.rdb |binary hyper2-1.0-7/hyper2/build/vignette.rds |binary hyper2-1.0-7/hyper2/data/NBA.rda |binary hyper2-1.0-7/hyper2/data/chess.rda |binary hyper2-1.0-7/hyper2/data/counterstrike.rda |binary hyper2-1.0-7/hyper2/data/euro.rda |binary hyper2-1.0-7/hyper2/data/formula1.rda |binary hyper2-1.0-7/hyper2/data/handover.rda |binary hyper2-1.0-7/hyper2/data/interzonal.rda |only hyper2-1.0-7/hyper2/data/karpov_kasparov_anand.rda |binary hyper2-1.0-7/hyper2/data/masterchef.rda |binary hyper2-1.0-7/hyper2/data/oneill.rda |binary hyper2-1.0-7/hyper2/data/rowing.rda |binary hyper2-1.0-7/hyper2/data/skating.rda |binary hyper2-1.0-7/hyper2/data/super_rugby.rda |binary hyper2-1.0-7/hyper2/data/table_tennis.rda |binary hyper2-1.0-7/hyper2/data/tennis.rda |binary hyper2-1.0-7/hyper2/data/volleyball.rda |binary hyper2-1.0-7/hyper2/inst/collusion_detection.R |only hyper2-1.0-7/hyper2/inst/collusion_stockholm1962.R | 130 ++++++-- hyper2-1.0-7/hyper2/inst/counterstrike.R | 8 hyper2-1.0-7/hyper2/inst/curacao1962_candidates.txt |only hyper2-1.0-7/hyper2/inst/curacao1962_individual_games.R |only hyper2-1.0-7/hyper2/inst/doc/hyper2.Rnw | 10 hyper2-1.0-7/hyper2/inst/doc/hyper2.pdf |binary hyper2-1.0-7/hyper2/inst/doc/icons.R | 4 hyper2-1.0-7/hyper2/inst/doc/icons.Rmd | 73 +++- hyper2-1.0-7/hyper2/inst/doc/icons.html | 257 ++-------------- hyper2-1.0-7/hyper2/inst/doc/integration.pdf |binary hyper2-1.0-7/hyper2/inst/doc/table_tennis_serve.html | 226 +------------- hyper2-1.0-7/hyper2/inst/eurovision.R | 1 hyper2-1.0-7/hyper2/inst/home_advantage.Rmd |only hyper2-1.0-7/hyper2/inst/karpov_kasparov_anand.R | 11 hyper2-1.0-7/hyper2/inst/kka_3draws.R | 25 - hyper2-1.0-7/hyper2/inst/kka_3whites.R |only hyper2-1.0-7/hyper2/inst/kka_array.R |only hyper2-1.0-7/hyper2/inst/skating_analysis.Rmd |only hyper2-1.0-7/hyper2/inst/stockholm1962.txt | 2 hyper2-1.0-7/hyper2/inst/stockholm1962_matches.txt |only hyper2-1.0-7/hyper2/man/chess.Rd | 12 hyper2-1.0-7/hyper2/man/interzonal.Rd |only hyper2-1.0-7/hyper2/man/karpov_kasparov_anand.Rd | 35 +- hyper2-1.0-7/hyper2/man/maxp.Rd | 7 hyper2-1.0-7/hyper2/vignettes/hyper2.Rnw | 10 hyper2-1.0-7/hyper2/vignettes/icons.Rmd | 73 +++- 53 files changed, 398 insertions(+), 601 deletions(-)
Title: Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI Data
Description: Performs Bayesian hierarchical multi-subject multiscale analysis of fMRI data as described in Sanyal & Ferreira (2012) <DOI:10.1016/j.neuroimage.2012.08.041> using wavelet based prior that borrows strength across subjects and returns posterior smoothed versions of the fMRI data and samples from the posterior distribution.
Author: Nilotpal Sanyal [aut, cre],
Marco A.R. Ferreira [aut]
Maintainer: Nilotpal Sanyal <nsanyal@stanford.edu>
Diff between BHMSMAfMRI versions 1.2 dated 2019-05-13 and 1.3 dated 2019-05-16
DESCRIPTION | 10 ++++---- MD5 | 32 ++++++++++++++-------------- NEWS | 10 +++++++- inst/doc/BHMSMAfMRIvignette.Rnw | 44 +++++++++++++++++++++++++++++++++++++-- inst/doc/BHMSMAfMRIvignette.pdf |binary man/BHMSMA.Rd | 2 - man/BHMSMAfMRI.Rd | 6 ++--- man/glmcoeff.Rd | 2 - man/hyperparamest.Rd | 2 - man/pikljbar.Rd | 2 - man/postglmcoeff.Rd | 2 - man/postgroupcoeff.Rd | 2 - man/postsamples.Rd | 2 - man/postwaveletcoeff.Rd | 2 - man/read.fmridata.Rd | 6 ++--- man/waveletcoeff.Rd | 2 - vignettes/BHMSMAfMRIvignette.Rnw | 44 +++++++++++++++++++++++++++++++++++++-- 17 files changed, 129 insertions(+), 41 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 0.9.9 dated 2019-03-05 and 0.9.9.1 dated 2019-05-16
radiant.multivariate-0.9.9.1/radiant.multivariate/DESCRIPTION | 12 - radiant.multivariate-0.9.9.1/radiant.multivariate/MD5 | 72 ++++++---- radiant.multivariate-0.9.9.1/radiant.multivariate/NAMESPACE | 2 radiant.multivariate-0.9.9.1/radiant.multivariate/NEWS.md | 6 radiant.multivariate-0.9.9.1/radiant.multivariate/R/aaa.R | 2 radiant.multivariate-0.9.9.1/radiant.multivariate/R/conjoint.R | 14 + radiant.multivariate-0.9.9.1/radiant.multivariate/R/hclus.R | 6 radiant.multivariate-0.9.9.1/radiant.multivariate/R/kclus.R | 69 ++++----- radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/analysis/hclus_ui.R | 3 radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/analysis/kclus_ui.R | 3 radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/conjoint.md | 12 - radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_carpet_design.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_expand.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_predict.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/conjoint_view.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/full_factor_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/full_factor_plot_rotation.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/full_factor_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/full_factor_summary_shopping.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/hclus_dendro.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/hclus_scree.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/kclus_cross_tabs_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/kclus_cross_tabs_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/kclus_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/kclus_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/kclus_transform_recode.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/mds_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/mds_plot_flip.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/mds_plot_tpbrands.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/mds_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/mds_summary_tpbrands.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/pre_factor_plot.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/pre_factor_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/prmap_plot_all.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/prmap_plot_brands.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/prmap_plot_brands_attr.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/figures/prmap_summary.png |only radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/full_factor.md | 6 radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/hclus.md | 4 radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/kclus.md | 10 - radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/mds.md | 10 - radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/pre_factor.md | 4 radiant.multivariate-0.9.9.1/radiant.multivariate/inst/app/tools/help/prmap.md | 8 - radiant.multivariate-0.9.9.1/radiant.multivariate/man/hclus.Rd | 5 radiant.multivariate-0.9.9.1/radiant.multivariate/man/kclus.Rd | 5 radiant.multivariate-0.9.9.1/radiant.multivariate/man/plot.kclus.Rd | 1 radiant.multivariate-0.9.9.1/radiant.multivariate/man/store.kclus.Rd | 1 radiant.multivariate-0.9.9.1/radiant.multivariate/man/summary.kclus.Rd | 1 radiant.multivariate-0.9.9/radiant.multivariate/R/deprecated.R |only radiant.multivariate-0.9.9/radiant.multivariate/man/radiant.multivariate-deprecated.Rd |only 52 files changed, 146 insertions(+), 110 deletions(-)
More information about radiant.multivariate at CRAN
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Title: Object Oriented Extensions
Description: Contains attribute operators (%$% and %$%<-), convenience functions and functions for printing objects compactly but informatively. And partly supports nested matrices.
Author: Abby Spurdle [cre, aut], Emil Bode [ctb]
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between intoo versions 0.3.0 dated 2019-04-01 and 0.3.1 dated 2019-05-16
DESCRIPTION | 10 ++++----- MD5 | 8 +++---- R/intoo.r | 34 ++++++++++++++++++------------ man/rd_2_convenience_functions_1.Rd | 38 ++++++++++++++++++---------------- man/rd_3_convenience_functions_2.Rd | 40 +++++++++++++++++------------------- 5 files changed, 69 insertions(+), 61 deletions(-)
Title: Generation of Bivariate Uniform Data and Its Relation to
Bivariate Binary Data
Description: Simulation of bivariate uniform data with a full range of correlations based on
two beta densities and computation of the tetrachoric correlation
(correlation of bivariate uniform data) from the phi coefficient
(correlation of bivariate binary data) and vice versa.
Author: Hakan Demirtas, Rawan Allozi, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between BivUnifBin versions 1.3 dated 2019-02-24 and 1.3.1 dated 2019-05-16
DESCRIPTION | 13 ++++++++----- MD5 | 4 ++-- man/BivUnifBin-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Data Generation with Binary and Continuous Non-Normal Components
Description: Generation of multiple binary and continuous non-normal variables simultaneously
given the marginal characteristics and association structure based on the methodology
proposed by Demirtas et al. (2012) <DOI:10.1002/sim.5362>.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between BinNonNor versions 1.5 dated 2019-03-02 and 1.5.1 dated 2019-05-16
DESCRIPTION | 8 ++-- MD5 | 8 ++-- man/BinNonNor-package.Rd | 4 +- man/Int.Corr.NN.Rd | 86 +++++++++++++++++++++++------------------------ man/gen.Bin.NonNor.Rd | 3 + 5 files changed, 56 insertions(+), 53 deletions(-)
Title: Bar, Surface and Related Plots
Description: Produces heat maps, contour plots, bar plots (in 3D) and surface plots (also, in 3D). Is designed for plotting functions of two variables, however, can plot relatively arbitrary matrices. Uses HCL color space, extensively. Also, supports triangular plots and nested matrices.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between barsurf versions 0.2.0 dated 2019-04-04 and 0.3.0 dated 2019-05-16
DESCRIPTION | 14 ++---- MD5 | 27 ++++++------- NAMESPACE | 1 R/plot2d.r | 77 ++++++++++++++++++++++--------------- R/plot3d.r | 88 +++++++++++++++++++++++++------------------ R/projection.r | 12 ++--- R/transform.r |only build/vignette.rds |binary inst/doc/barsurf.R | 54 +++++++++++++------------- inst/doc/barsurf.Rnw | 10 ++-- inst/doc/barsurf.pdf |binary man/rd_1_plots_discrete.Rd | 11 +++-- man/rd_2_plots_continuous.Rd | 5 +- man/rd_3_plots_triangular.Rd | 13 +++--- vignettes/barsurf.Rnw | 10 ++-- 15 files changed, 183 insertions(+), 139 deletions(-)