Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides
stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 2.1.1 dated 2019-03-16 and 2.1.2 dated 2019-05-29
DESCRIPTION | 17 - MD5 | 18 - NEWS.md | 6 build/tibble.pdf |binary build/vignette.rds |binary inst/doc/extending.html | 203 ++++++++++---------- inst/doc/tibble.html | 224 +++++++++-------------- tests/testthat/output/trunc_mat/POSIXlt-8-60.txt | 2 tests/testthat/test-data-frame.R | 1 tests/testthat/test-tbl-df.R | 1 10 files changed, 223 insertions(+), 249 deletions(-)
Title: Wrapper for the 'Intro.js' Library
Description: A wrapper for the 'Intro.js' library (For more info: <http://www.introjs.com>).
This package makes it easy to include step-by-step introductions, and clickable hints in a 'Shiny'
application. It supports both static introductions in the UI, and programmatic introductions from
the server-side.
Author: Carl Ganz [aut, cre],
Afshin Mehrabani [ctb, cph] (intro.js in javascript/introjs)
Maintainer: Carl Ganz <carlganz@gmail.com>
Diff between rintrojs versions 0.2.0 dated 2017-07-08 and 0.2.2 dated 2019-05-29
DESCRIPTION | 8 +-- MD5 | 20 ++++--- NAMESPACE | 1 NEWS.md | 8 +++ R/introjs.R | 81 ++++++++++++++++++++++---------- README.md | 80 ++++++++++++++++++++++--------- inst/examples |only inst/javascript/introjs/intro.min.js | 52 -------------------- inst/javascript/introjs/introjs.min.css | 2 inst/javascript/rintro.js | 21 +++++++- man/introBox.Rd | 7 +- man/readCallback.Rd |only 12 files changed, 163 insertions(+), 117 deletions(-)
Title: Global Sensitivity Analysis in Physiologically Based Kinetic
Modeling
Description: Applying the global sensitivity analysis workflow to investigate the parameter uncertainty and sensitivity in pharmacokinetic (PK) models, especially the physiologically-based pharmacokinetic (PBPK) model with multivariate outputs. The package also provide some functions to check the sensitivity measures and its convergence of model parameters.
Author: Nan-Hung Hsieh [aut, cre] (<https://orcid.org/0000-0003-0163-2766>),
Brad Reisfeld [aut],
Weihsueh A. Chiu [aut] (<https://orcid.org/0000-0002-7575-2368>)
Maintainer: Nan-Hung Hsieh <nhsieh@cvm.tamu.edu>
Diff between pksensi versions 1.1.0 dated 2019-05-12 and 1.1.1 dated 2019-05-29
pksensi-1.1.0/pksensi/vignettes/pbpk_apap.model |only pksensi-1.1.0/pksensi/vignettes/pbtk1cpt.model |only pksensi-1.1.1/pksensi/DESCRIPTION | 8 - pksensi-1.1.1/pksensi/MD5 | 26 +-- pksensi-1.1.1/pksensi/NEWS.md | 28 +++- pksensi-1.1.1/pksensi/R/compile.R | 7 - pksensi-1.1.1/pksensi/R/install.R | 10 + pksensi-1.1.1/pksensi/R/package.R | 2 pksensi-1.1.1/pksensi/R/solve_mcsim.R | 41 +++--- pksensi-1.1.1/pksensi/inst/doc/pbpk_apap.R | 14 -- pksensi-1.1.1/pksensi/inst/doc/pbpk_apap.Rmd | 21 +-- pksensi-1.1.1/pksensi/inst/doc/pbpk_apap.html | 164 +++++++++++------------- pksensi-1.1.1/pksensi/inst/doc/pbtk1cpt.html | 4 pksensi-1.1.1/pksensi/man/about-pksensi.Rd | 2 pksensi-1.1.1/pksensi/vignettes/pbpk_apap.Rmd | 21 +-- 15 files changed, 192 insertions(+), 156 deletions(-)
Title: GPU Functions for R Objects
Description: Provides GPU enabled functions for R objects in a simple and
approachable manner. New gpu* and vcl* classes have been provided to
wrap typical R objects (e.g. vector, matrix), in both host and device
spaces, to mirror typical R syntax without the need to know OpenCL.
Author: Charles Determan Jr.
Maintainer: Charles Determan Jr. <cdetermanjr@gmail.com>
Diff between gpuR versions 2.0.2 dated 2019-05-29 and 2.0.3 dated 2019-05-29
DESCRIPTION | 8 +- MD5 | 10 +-- NAMESPACE | 124 +++++++++++++++++++++++++++++++++++++++++++ inst/doc/custom_ocl_gpuR.pdf |binary inst/doc/gpuR.pdf |binary src/Makevars.win | 2 6 files changed, 134 insertions(+), 10 deletions(-)
Title: Interactively Visualize Genetic Mutation Data using a
Lollipop-Diagram
Description: R interface for 'g3-lollipop' JavaScript library.
Visualize genetic mutation data using an interactive lollipop diagram in RStudio or your browser.
Author: Xin Guo [aut, cre]
Maintainer: Xin Guo <g3viz.group@gmail.com>
Diff between g3viz versions 1.1.1 dated 2019-04-26 and 1.1.2 dated 2019-05-29
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- NEWS.md | 7 ++++- inst/doc/chart_themes.html | 48 ++++++++++++++++++++++------------------- inst/doc/introduction.html | 32 +++++++++++++++------------ inst/htmlwidgets/g3Lollipop.js | 6 +++++ 6 files changed, 63 insertions(+), 46 deletions(-)
Title: Model Selection and Multimodel Inference Based on (Q)AIC(c)
Description: Functions to implement model selection and multimodel inference based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc) from various model object classes. The package implements classic model averaging for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates or effect sizes. The package includes diagnostics and goodness-of-fit statistics for certain model types including those of 'unmarkedFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs', 'rjags', and 'jagsUI' classes. Functions also implement model selection using BIC. Objects following model selection and multimodel inference can be formatted to LaTeX using 'xtable' methods included in the package.
Author: Marc J. Mazerolle <marc.mazerolle@sbf.ulaval.ca> and portions of code contributed by Dan Linden.
Maintainer: Marc J. Mazerolle <marc.mazerolle@sbf.ulaval.ca>
Diff between AICcmodavg versions 2.2-1 dated 2019-03-08 and 2.2-2 dated 2019-05-29
DESCRIPTION | 11 MD5 | 68 ++--- NAMESPACE | 15 + R/AICc.R | 20 + R/aictab.R | 73 +++++ R/bictab.R | 66 +++++ R/checkConv.R | 14 + R/checkParms.R | 43 +++ R/extractSE.R | 12 R/extractX.R | 107 ++++++++ R/importance.R | 73 +++++ R/modavg.R | 222 ++++++++++++++++++ R/modavgEffect.R | 169 ++++++++++++- R/modavgPred.R | 128 ++++++++++ R/modavgShrink.R | 118 ++++++++- R/multComp.R | 567 ++++++++++++++++++++++++++++++++++++++++++++-- R/predictSE.R | 305 ++++++++++++++++++++++++ R/useBIC.R | 19 + inst/NEWS | 12 man/AICc.Rd | 12 man/AICcmodavg-package.Rd | 6 man/aictab.Rd | 21 + man/bictab.Rd | 22 + man/checkConv.Rd | 13 - man/checkParms.Rd | 3 man/extractSE.Rd | 22 - man/extractX.Rd | 10 man/importance.Rd | 4 man/modavg.Rd | 12 man/modavgEffect.Rd | 18 - man/modavgPred.Rd | 10 man/modavgShrink.Rd | 12 man/multComp.Rd | 10 man/predictSE.Rd | 18 - man/useBIC.Rd | 7 35 files changed, 2098 insertions(+), 144 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.1.7 dated 2019-04-09 and 2.2.1 dated 2019-05-29
DESCRIPTION | 8 +++--- MD5 | 54 +++++++++++++++++++++++----------------------- R/cliffDelta.r | 10 +++++++- R/cohenG.r | 35 +++++++++++++++++++++++------ R/cohenW.r | 1 R/cramerV.r | 8 +++++- R/cramerVFit.r | 10 ++++++-- R/epsilonSquared.r | 7 +++++ R/freemanTheta.r | 7 +++++ R/multiVDA.r | 12 +++++++++- R/rcompanion.R | 6 +++-- R/vda.r | 8 ++++++ R/wilcoxonOneSampleR.r | 15 ++++++++---- R/wilcoxonPairedR.r | 18 +++++++++++---- R/wilcoxonR.r | 18 +++++++++++---- man/cliffDelta.Rd | 10 +++++++- man/cohenG.Rd | 27 +++++++++++++++++++---- man/cohenW.Rd | 1 man/cramerV.Rd | 6 +++++ man/cramerVFit.Rd | 8 +++++- man/epsilonSquared.Rd | 4 +++ man/freemanTheta.Rd | 4 +++ man/multiVDA.Rd | 10 ++++++++ man/rcompanion.Rd | 6 +++-- man/vda.Rd | 8 ++++++ man/wilcoxonOneSampleR.Rd | 5 +++- man/wilcoxonPairedR.Rd | 9 ++++++- man/wilcoxonR.Rd | 9 ++++++- 28 files changed, 250 insertions(+), 74 deletions(-)
Title: Mediterranean Forest Simulation
Description: Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>].
Author: Miquel De Cáceres [aut, cre],
Víctor Granda [aut],
Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between medfate versions 0.7.4 dated 2019-03-22 and 0.8.2 dated 2019-05-29
medfate-0.7.4/medfate/R/DefineSpatialClasses.R |only medfate-0.7.4/medfate/R/SFI2SGL.R |only medfate-0.7.4/medfate/R/SFI2SPL.R |only medfate-0.7.4/medfate/R/SpatialGridLandscape.R |only medfate-0.7.4/medfate/R/SpatialPixelsLandscape.R |only medfate-0.7.4/medfate/R/SpatialPointsLandscape-methods.R |only medfate-0.7.4/medfate/R/growthpoints.R |only medfate-0.7.4/medfate/R/plot.spwb.day.R |only medfate-0.7.4/medfate/R/plot.spwbgrid.R |only medfate-0.7.4/medfate/R/pressureVolumeCurvePlot.R |only medfate-0.7.4/medfate/R/spwb.ldrCalibration.R |only medfate-0.7.4/medfate/R/spwb.ldrOptimization.R |only medfate-0.7.4/medfate/R/spwb.resistances.R |only medfate-0.7.4/medfate/R/spwb.stress.R |only medfate-0.7.4/medfate/R/spwbgrid.R |only medfate-0.7.4/medfate/R/spwbpoints.R |only medfate-0.7.4/medfate/R/stomatalRegulationPlot.R |only medfate-0.7.4/medfate/R/supplyFunctionPlot.R |only medfate-0.7.4/medfate/R/vulnerabilityCurvePlot.R |only medfate-0.7.4/medfate/data/exampleSGL.rda |only medfate-0.7.4/medfate/data/exampleSPL.rda |only medfate-0.7.4/medfate/inst/doc/ComplexWaterBalance.R |only medfate-0.7.4/medfate/inst/doc/ComplexWaterBalance.Rmd |only medfate-0.7.4/medfate/inst/doc/ComplexWaterBalance.html |only medfate-0.7.4/medfate/man/SFI2Landscape.Rd |only medfate-0.7.4/medfate/man/SpatialGridLandscape-class.Rd |only medfate-0.7.4/medfate/man/SpatialPixelsLandscape-class.Rd |only medfate-0.7.4/medfate/man/SpatialPointsLandscape-class.Rd |only medfate-0.7.4/medfate/man/SpatialPointsLandscape.Rd |only medfate-0.7.4/medfate/man/conductancefunctions.Rd |only medfate-0.7.4/medfate/man/exampleSGL.Rd |only medfate-0.7.4/medfate/man/exampleSPL.Rd |only medfate-0.7.4/medfate/man/fire.behaviour.Rd |only medfate-0.7.4/medfate/man/forestvalues.Rd |only medfate-0.7.4/medfate/man/fuel.properties.Rd |only medfate-0.7.4/medfate/man/plantvalues.Rd |only medfate-0.7.4/medfate/man/plot.spwb.day.Rd |only medfate-0.7.4/medfate/man/raininterception.Rd |only medfate-0.7.4/medfate/man/scalingconductance.Rd |only medfate-0.7.4/medfate/man/soilhydrology.Rd |only medfate-0.7.4/medfate/man/soiltexture.Rd |only medfate-0.7.4/medfate/man/soilthermodynamics.Rd |only medfate-0.7.4/medfate/man/spatialForestSummary.Rd |only medfate-0.7.4/medfate/man/speciesvalues.Rd |only medfate-0.7.4/medfate/man/spwb.day.Rd |only medfate-0.7.4/medfate/man/spwb.ldrCalibration.Rd |only medfate-0.7.4/medfate/man/spwb.ldrOptimization.Rd |only medfate-0.7.4/medfate/man/spwb.resistances.Rd |only medfate-0.7.4/medfate/man/spwb.stress.Rd |only medfate-0.7.4/medfate/man/spwbgrid.Rd |only medfate-0.7.4/medfate/man/spwbpoints.Rd |only medfate-0.7.4/medfate/man/supplyfunctions.Rd |only medfate-0.7.4/medfate/man/transp.Rd |only medfate-0.7.4/medfate/src/fireutils.cpp |only medfate-0.7.4/medfate/src/fireutils.h |only medfate-0.7.4/medfate/vignettes/ComplexWaterBalance.Rmd |only medfate-0.8.2/medfate/DESCRIPTION | 11 medfate-0.8.2/medfate/MD5 | 242 - medfate-0.8.2/medfate/NAMESPACE | 22 medfate-0.8.2/medfate/NEWS | 29 medfate-0.8.2/medfate/R/RcppExports.R | 724 +-- medfate-0.8.2/medfate/R/VerticalProfiles.R | 155 medfate-0.8.2/medfate/R/defaultControl.R | 6 medfate-0.8.2/medfate/R/forest_mergeTrees.R |only medfate-0.8.2/medfate/R/hydraulics_supplyFunctionPlot.R |only medfate-0.8.2/medfate/R/hydraulics_vulnerabilityCurvePlot.R |only medfate-0.8.2/medfate/R/hydrology_interceptionPlot.R |only medfate-0.8.2/medfate/R/modifySpParams.R |only medfate-0.8.2/medfate/R/moisture_pressureVolumeCurvePlot.R |only medfate-0.8.2/medfate/R/plot.growth.R | 247 - medfate-0.8.2/medfate/R/plot.spwb.R | 667 +-- medfate-0.8.2/medfate/R/plot.spwb_day.R |only medfate-0.8.2/medfate/R/plotutils.R |only medfate-0.8.2/medfate/R/print.soil.R | 17 medfate-0.8.2/medfate/R/soil_retentionCurvePlot.R |only medfate-0.8.2/medfate/R/soilhydrology.R | 4 medfate-0.8.2/medfate/R/spwb_ldrCalibration.R |only medfate-0.8.2/medfate/R/spwb_ldrOptimization.R |only medfate-0.8.2/medfate/R/spwb_maximumTranspirationRatioPlot.R |only medfate-0.8.2/medfate/R/spwb_resistances.R |only medfate-0.8.2/medfate/R/spwb_stress.R |only medfate-0.8.2/medfate/R/spwb_validation.R |only medfate-0.8.2/medfate/R/spwb_waterUseEfficiency.R |only medfate-0.8.2/medfate/R/summary.forest.R | 2 medfate-0.8.2/medfate/R/summary.spwb.R | 4 medfate-0.8.2/medfate/R/transp_stomatalRegulationPlot.R |only medfate-0.8.2/medfate/build/vignette.rds |binary medfate-0.8.2/medfate/data/SpParamsMED.rda |binary medfate-0.8.2/medfate/inst/doc/AdvancedWaterEnergyBalance.R |only medfate-0.8.2/medfate/inst/doc/AdvancedWaterEnergyBalance.Rmd |only medfate-0.8.2/medfate/inst/doc/AdvancedWaterEnergyBalance.html |only medfate-0.8.2/medfate/inst/doc/ForestGrowth.R | 109 medfate-0.8.2/medfate/inst/doc/ForestGrowth.Rmd | 129 medfate-0.8.2/medfate/inst/doc/ForestGrowth.html | 171 medfate-0.8.2/medfate/inst/doc/PackageOverview.R | 2 medfate-0.8.2/medfate/inst/doc/PackageOverview.Rmd | 62 medfate-0.8.2/medfate/inst/doc/PackageOverview.html | 76 medfate-0.8.2/medfate/inst/doc/SimpleWaterBalance.R | 94 medfate-0.8.2/medfate/inst/doc/SimpleWaterBalance.Rmd | 182 medfate-0.8.2/medfate/inst/doc/SimpleWaterBalance.html | 617 +- medfate-0.8.2/medfate/inst/include |only medfate-0.8.2/medfate/man/SFM_metric.Rd | 90 medfate-0.8.2/medfate/man/SpParamsMED.Rd | 3 medfate-0.8.2/medfate/man/VerticalProfiles.Rd | 53 medfate-0.8.2/medfate/man/biophysics.Rd | 20 medfate-0.8.2/medfate/man/defaultControl.Rd | 16 medfate-0.8.2/medfate/man/defaultSoilParams.Rd | 2 medfate-0.8.2/medfate/man/extractSFIforest.Rd | 4 medfate-0.8.2/medfate/man/fire_behaviour.Rd |only medfate-0.8.2/medfate/man/forest.Rd | 4 medfate-0.8.2/medfate/man/forest2spwbInput.Rd | 24 medfate-0.8.2/medfate/man/forest_values.Rd |only medfate-0.8.2/medfate/man/fuel_properties.Rd |only medfate-0.8.2/medfate/man/growth.Rd | 16 medfate-0.8.2/medfate/man/hydraulics_conductancefunctions.Rd |only medfate-0.8.2/medfate/man/hydraulics_scalingconductance.Rd |only medfate-0.8.2/medfate/man/hydraulics_supplyfunctions.Rd |only medfate-0.8.2/medfate/man/hydrology_raininterception.Rd |only medfate-0.8.2/medfate/man/hydrology_soil.Rd |only medfate-0.8.2/medfate/man/hydrology_verticalInputs.Rd |only medfate-0.8.2/medfate/man/light.Rd | 38 medfate-0.8.2/medfate/man/modifySpParams.Rd |only medfate-0.8.2/medfate/man/moisture.Rd | 51 medfate-0.8.2/medfate/man/pheno_updateLeaves.Rd |only medfate-0.8.2/medfate/man/photo.Rd | 72 medfate-0.8.2/medfate/man/plant_values.Rd |only medfate-0.8.2/medfate/man/plot.spwb.Rd | 71 medfate-0.8.2/medfate/man/plot.spwb_day.Rd |only medfate-0.8.2/medfate/man/root.Rd | 32 medfate-0.8.2/medfate/man/soil.Rd | 4 medfate-0.8.2/medfate/man/soil_texture.Rd |only medfate-0.8.2/medfate/man/soil_thermodynamics.Rd |only medfate-0.8.2/medfate/man/species_values.Rd |only medfate-0.8.2/medfate/man/spwb.Rd | 78 medfate-0.8.2/medfate/man/spwb_day.Rd |only medfate-0.8.2/medfate/man/spwb_ldrCalibration.Rd |only medfate-0.8.2/medfate/man/spwb_ldrOptimization.Rd |only medfate-0.8.2/medfate/man/spwb_maximumTranspirationRatioPlot.Rd |only medfate-0.8.2/medfate/man/spwb_resistances.Rd |only medfate-0.8.2/medfate/man/spwb_stress.Rd |only medfate-0.8.2/medfate/man/spwb_validation.Rd |only medfate-0.8.2/medfate/man/spwb_waterUseEfficiency.Rd |only medfate-0.8.2/medfate/man/transpiration.Rd |only medfate-0.8.2/medfate/src/RcppExports.cpp | 1710 ++++++-- medfate-0.8.2/medfate/src/biophysicsutils.cpp | 6 medfate-0.8.2/medfate/src/firebehaviour.cpp | 29 medfate-0.8.2/medfate/src/forestutils.cpp | 220 - medfate-0.8.2/medfate/src/forestutils.h | 5 medfate-0.8.2/medfate/src/fuelmoisture.cpp | 2 medfate-0.8.2/medfate/src/fuelstructure.cpp | 4 medfate-0.8.2/medfate/src/growth.cpp | 135 medfate-0.8.2/medfate/src/hydraulics.cpp | 84 medfate-0.8.2/medfate/src/hydrology.cpp | 188 medfate-0.8.2/medfate/src/hydrology.h | 21 medfate-0.8.2/medfate/src/lightextinction.cpp | 18 medfate-0.8.2/medfate/src/modelInput.cpp | 65 medfate-0.8.2/medfate/src/phenology.cpp | 43 medfate-0.8.2/medfate/src/phenology.h | 6 medfate-0.8.2/medfate/src/photosynthesis.cpp | 58 medfate-0.8.2/medfate/src/photosynthesis.h | 3 medfate-0.8.2/medfate/src/root.cpp | 8 medfate-0.8.2/medfate/src/soil.cpp | 142 medfate-0.8.2/medfate/src/soil.h | 17 medfate-0.8.2/medfate/src/spwb.cpp | 2130 +++------- medfate-0.8.2/medfate/src/spwb.h | 8 medfate-0.8.2/medfate/src/tissuemoisture.cpp | 12 medfate-0.8.2/medfate/src/transpiration.cpp | 1213 ++++- medfate-0.8.2/medfate/src/transpiration.h | 6 medfate-0.8.2/medfate/src/windextinction.cpp | 2 medfate-0.8.2/medfate/vignettes/AdvancedWaterEnergyBalance.Rmd |only medfate-0.8.2/medfate/vignettes/ForestGrowth.Rmd | 129 medfate-0.8.2/medfate/vignettes/PackageOverview.Rmd | 62 medfate-0.8.2/medfate/vignettes/SimpleWaterBalance.Rmd | 182 173 files changed, 5842 insertions(+), 4816 deletions(-)
Title: Detects Fraud in Online Surveys by Tracing, Scoring, and
Visualizing IP Addresses
Description: Takes an array of IPs and the keys for the services the user wishes to use (IP Hub, IP Intel, and Proxycheck),
and passes these to all respective APIs. Returns a dataframe with the IP addresses (used for merging),
country, ISP, labels for non-US IP Addresses, VPS use, and recommendations for blocking. The package
also provides optional visualization tools for checking the distributions. Additional
functions are provided to call each discrete API endpoint. The package and methods are detailed in the recent paper
Waggoner, Kennedy, and Clifford (2019) <doi:10.21105/joss.01285>.
Author: Ryan Kennedy [aut, cre],
Philip Waggoner [aut] (<https://orcid.org/0000-0002-7825-7573>),
Scott Clifford [ctb],
Bob Rudis [ctb] (<https://orcid.org/0000-0001-5670-2640>)
Maintainer: Ryan Kennedy <rkennedy@uh.edu>
Diff between rIP versions 1.1.2 dated 2019-05-07 and 1.2.0 dated 2019-05-29
DESCRIPTION | 28 +++++++++++++++++++--------- LICENSE | 4 ++-- MD5 | 29 ++++++++++++++++++++++++----- NAMESPACE | 24 +++++++++++++++++++++++- NEWS.md |only R/aaa.R |only R/getipintel-contact-info.R |only R/getipintel.R |only R/iphub-api-key.R |only R/iphub-check.R |only R/proxycheck-api-key.R |only R/proxycheck.R |only R/rIP-package.R |only R/rIP.R | 24 ++++++++++++++---------- R/zzz.R |only README.md | 7 +++---- man/getipintel.Rd |only man/getipintel_contact_info.Rd |only man/iphub_api_key.Rd |only man/iphub_check.Rd |only man/proxycheck.Rd |only man/proxycheck_api_key.Rd |only man/rIP.Rd |only tests |only 24 files changed, 85 insertions(+), 31 deletions(-)
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre] (<https://orcid.org/0000-0002-3237-0941>),
John Fox [aut],
Phil Chalmers [aut],
Georges Monette [ctb],
Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.9.1 dated 2018-04-04 and 0.9.2 dated 2019-05-29
DESCRIPTION | 24 + MD5 | 95 +++---- NAMESPACE | 3 NEWS.md | 11 R/Eigen.R | 104 +++++++- R/GramSchmidt.R | 68 ++--- R/MoorePenrose.R |only R/arrows3d.R | 2 R/regvec3d.R | 10 R/util.R | 21 + build/vignette.rds |binary inst/doc/det-ex1.html | 427 +++++++++++++++++++++++++-------- inst/doc/det-ex2.html | 387 +++++++++++++++++++++++------ inst/doc/eigen-ex1.html | 365 +++++++++++++++++++++++----- inst/doc/eigen-ex2.html | 379 +++++++++++++++++++++++------ inst/doc/ginv.html | 359 ++++++++++++++++++++++----- inst/doc/gramreg.html | 413 ++++++++++++++++++++++++------- inst/doc/inv-ex1.html | 441 ++++++++++++++++++++++++++-------- inst/doc/inv-ex2.html | 385 +++++++++++++++++++++++------ inst/doc/linear-equations.html | 530 +++++++++++++++++++++++++++++++++-------- man/Det.Rd | 1 man/GramSchmidt.Rd | 7 man/MoorePenrose.Rd |only man/Proj.Rd | 9 man/SVD.Rd | 17 + man/adjoint.Rd | 1 man/arc.Rd | 9 man/arrows3d.Rd | 9 man/buildTmat.Rd | 1 man/circle3d.Rd | 16 + man/cofactor.Rd | 1 man/corner.Rd | 7 man/gaussianElimination.Rd | 6 man/matlib.Rd | 1 man/minor.Rd | 1 man/plot.regvec3d.Rd | 20 - man/plotEqn3d.Rd | 4 man/pointOnLine.Rd | 7 man/printMatrix.Rd |only man/regvec3d.Rd | 18 - man/rowCofactors.Rd | 1 man/rowMinors.Rd | 1 man/rowadd.Rd | 1 man/rowmult.Rd | 1 man/rowswap.Rd | 1 man/showEig.Rd | 4 man/showEqn.Rd | 4 man/svdDemo.Rd | 3 man/vectors.Rd | 7 man/vectors3d.Rd | 13 - 50 files changed, 3283 insertions(+), 912 deletions(-)
Title: Simultaneous Edit-Imputation for Continuous Microdata
Description: An integrated editing and imputation method for continuous microdata under linear constraints is implemented. It relies on a Bayesian nonparametric hierarchical modeling approach as described in Kim et al. (2015) <doi:10.1080/01621459.2015.1040881>. In this approach, the joint distribution of the data is estimated by a flexible joint probability model. The generated edit-imputed data are guaranteed to satisfy all imposed edit rules, whose types include ratio edits, balance edits and range restrictions.
Author: Quanli Wang, Hang J. Kim, Jerome P. Reiter, Lawrence H. Cox and Alan F. Karr
Maintainer: Hang J. Kim <hangkim0@gmail.com>
Diff between EditImputeCont versions 1.1.3 dated 2019-05-13 and 1.1.4 dated 2019-05-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/lp_MPS.c | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
More information about EditImputeCont at CRAN
Permanent link
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and indices used for null-hypothesis testing (such as ROPE percentage and pd).
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.1.0 dated 2019-04-08 and 0.2.0 dated 2019-05-29
bayestestR-0.1.0/bayestestR/R/plot.equivalence_test.R |only bayestestR-0.1.0/bayestestR/R/utils_as.data.frame.density.R |only bayestestR-0.1.0/bayestestR/R/utils_density_at.R |only bayestestR-0.1.0/bayestestR/R/utils_rnorm_perfect.R |only bayestestR-0.1.0/bayestestR/inst/doc/example1_GLM.R |only bayestestR-0.1.0/bayestestR/inst/doc/example1_GLM.Rmd |only bayestestR-0.1.0/bayestestR/inst/doc/example1_GLM.html |only bayestestR-0.1.0/bayestestR/man/flatten_list.Rd |only bayestestR-0.1.0/bayestestR/man/rnorm_perfect.Rd |only bayestestR-0.1.0/bayestestR/tests/testthat/test-rnorm_perfect.R |only bayestestR-0.1.0/bayestestR/vignettes/example1_GLM.Rmd |only bayestestR-0.2.0/bayestestR/DESCRIPTION | 27 bayestestR-0.2.0/bayestestR/MD5 | 196 +- bayestestR-0.2.0/bayestestR/NAMESPACE | 133 + bayestestR-0.2.0/bayestestR/NEWS.md | 40 bayestestR-0.2.0/bayestestR/R/area_under_curve.R |only bayestestR-0.2.0/bayestestR/R/bayesfactor.R |only bayestestR-0.2.0/bayestestR/R/bayesfactor_inclusion.R |only 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Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. From 'rgdal' 1.4.1, provision is made for 'PROJ6' accommodation, with 'PROJ6' functionality to follow; from 1.4.1 'rgdal' will build and function when 'PROJ' >= 6. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.4-3 dated 2019-03-14 and 1.4-4 dated 2019-05-29
ChangeLog | 21 +++++++++++ DESCRIPTION | 15 +++----- MD5 | 18 +++++----- build/vignette.rds |binary configure | 71 ++++++++++++++++++++++++---------------- configure.ac | 51 ++++++++++++++++++---------- inst/ChangeLog | 21 +++++++++++ inst/SVN_VERSION | 2 - inst/doc/OGR_shape_encoding.pdf |binary man/showWKT.Rd | 2 - 10 files changed, 136 insertions(+), 65 deletions(-)
Title: Fits a Principal Curve in Arbitrary Dimension
Description: Fitting a principal curve to a data matrix in arbitrary dimensions.
Hastie and Stuetzle (1989) <doi:10.2307/2289936>.
Author: Trevor Hastie [aut],
Andreas Weingessel [aut],
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Henrik Bengtsson [ctb] (HenrikBengtsson),
Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between princurve versions 2.1.3 dated 2018-10-08 and 2.1.4 dated 2019-05-29
princurve-2.1.3/princurve/R/get.lam.R |only princurve-2.1.3/princurve/R/principal.curve.R |only princurve-2.1.3/princurve/man/get.lam.Rd |only princurve-2.1.3/princurve/man/principal.curve.Rd |only princurve-2.1.4/princurve/DESCRIPTION | 22 +++--- princurve-2.1.4/princurve/MD5 | 26 +++---- princurve-2.1.4/princurve/R/bias_correct_curve.R | 4 - princurve-2.1.4/princurve/R/deprecated.R |only princurve-2.1.4/princurve/R/periodic_lowess.R | 2 princurve-2.1.4/princurve/R/principal_curve.R | 2 princurve-2.1.4/princurve/README.md | 27 +++---- princurve-2.1.4/princurve/inst/NEWS | 12 ++- princurve-2.1.4/princurve/man/deprecated.Rd |only princurve-2.1.4/princurve/man/figures/README_princurve-1.png |binary princurve-2.1.4/princurve/tests/testthat/test-legacy_princurve.R | 34 +--------- princurve-2.1.4/princurve/tests/testthat/test-principal_curve.R | 19 ----- princurve-2.1.4/princurve/tests/testthat/test-project_to_curve.R | 10 -- 17 files changed, 54 insertions(+), 104 deletions(-)
Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Cáceres [aut, cre],
Nicolas Martin [aut],
Víctor Granda [aut],
Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between meteoland versions 0.8.0 dated 2019-04-29 and 0.8.1 dated 2019-05-29
meteoland-0.8.0/meteoland/vignettes/Meteorology-020.pdf |only meteoland-0.8.1/meteoland/DESCRIPTION | 8 meteoland-0.8.1/meteoland/MD5 | 46 - meteoland-0.8.1/meteoland/NAMESPACE | 2 meteoland-0.8.1/meteoland/NEWS | 4 meteoland-0.8.1/meteoland/R/RcppExports.R | 8 meteoland-0.8.1/meteoland/R/summarypoints.R | 32 meteoland-0.8.1/meteoland/R/sysdata.rda |binary meteoland-0.8.1/meteoland/build/vignette.rds |binary meteoland-0.8.1/meteoland/data/examplecorrectiondata.rda |binary meteoland-0.8.1/meteoland/data/examplegridtopography.rda |binary meteoland-0.8.1/meteoland/data/exampleinterpolationdata.rda |binary meteoland-0.8.1/meteoland/inst/doc/Meteorology.R | 322 +++++++--- meteoland-0.8.1/meteoland/inst/doc/Meteorology.Rnw | 317 +++++++-- meteoland-0.8.1/meteoland/inst/doc/Meteorology.pdf |binary meteoland-0.8.1/meteoland/inst/doc/UserGuide.html | 4 meteoland-0.8.1/meteoland/inst/include/meteoland_RcppExports.h | 16 meteoland-0.8.1/meteoland/man/downloadSMC.Rd | 4 meteoland-0.8.1/meteoland/man/radiation.Rd | 7 meteoland-0.8.1/meteoland/man/summarypoints.Rd | 11 meteoland-0.8.1/meteoland/src/RcppExports.cpp | 33 - meteoland-0.8.1/meteoland/src/radiation.cpp | 111 ++- meteoland-0.8.1/meteoland/src/radiation.h | 6 meteoland-0.8.1/meteoland/vignettes/Meteorology-025.pdf |only meteoland-0.8.1/meteoland/vignettes/Meteorology.Rnw | 317 +++++++-- 25 files changed, 875 insertions(+), 373 deletions(-)
Title: May All Data be Reproducible and Transparent (MADRaT) *
Description: Provides a framework which should improve reproducibility and transparency in data processing. It provides functionality such as automatic meta data creation and management, rudimentary quality management, data caching, work-flow management and data aggregation.
* The title is a wish not a promise. By no means we expect this package to deliver everything what is needed to achieve full reproducibility and transparency, but we believe that it supports efforts in this direction.
Author: Jan Philipp Dietrich [aut, cre],
Lavinia Baumstark [aut],
Stephen Wirth [aut],
Anastasis Giannousakis [aut],
Renato Rodrigues [aut],
Benjamin Leon Bodirsky [aut],
Ulrich Kreidenweis [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between madrat versions 1.22.1 dated 2017-09-06 and 1.61.0 dated 2019-05-29
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Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE), measurement models are typically multivariate normal factor models.
Using the original ctsem formulation based on OpenMx, described in the JSS paper
"Continuous Time Structural Equation Modeling with R Package ctsem", with updated version
as CRAN vignette <https://cran.r-project.org/web/packages/ctsem/vignettes/ctsem.pdf> ,
linear mixed effects SDE's estimated via maximum likelihood and optimization are possible.
Using the Stan based formulation, described in <https://www.researchgate.net/publication/310747987_Introduction_to_Hierarchical_Continuous_Time_Dynamic_Modelling_With_ctsem> ,
nonlinearity (state dependent parameters) and random effects on all parameters
are possible, using either optimization (with optional importance sampling) or
Stan's Hamiltonian Monte Carlo sampling. Priors may be used. For the conceptual
overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 2.9.0 dated 2019-04-13 and 2.9.6 dated 2019-05-29
ctsem-2.9.0/ctsem/R/ctStanGenerateData.R |only ctsem-2.9.0/ctsem/R/ctStanSummary.R |only ctsem-2.9.0/ctsem/man/ctStanGenerateData.Rd |only ctsem-2.9.0/ctsem/tests/testthat/ctRaschExampleTest.R |only ctsem-2.9.0/ctsem/tests/testthat/ctStanFitTests.R |only ctsem-2.9.0/ctsem/tests/testthat/differenttraits.R |only ctsem-2.9.0/ctsem/tests/testthat/fixedvalsunspot.R |only ctsem-2.9.0/ctsem/tests/testthat/kalmanVram.R |only ctsem-2.9.0/ctsem/tests/testthat/nonlinearVlinear.R |only ctsem-2.9.0/ctsem/tests/testthat/singleprocess.R |only ctsem-2.9.0/ctsem/tests/testthat/test-objectiveEquiv.R |only ctsem-2.9.0/ctsem/tests/testthat/ukfpoptest.R |only ctsem-2.9.0/ctsem/vignettes/hierarchicalrefs.bib |only ctsem-2.9.6/ctsem/DESCRIPTION | 47 - ctsem-2.9.6/ctsem/MD5 | 208 +++--- ctsem-2.9.6/ctsem/NAMESPACE | 12 ctsem-2.9.6/ctsem/NEWS | 7 ctsem-2.9.6/ctsem/R/ctCI.R | 4 ctsem-2.9.6/ctsem/R/ctCheckFit.R | 160 +++- ctsem-2.9.6/ctsem/R/ctDataHelp.R | 157 ---- ctsem-2.9.6/ctsem/R/ctFit.R | 8 ctsem-2.9.6/ctsem/R/ctGenerateFromFit.R | 4 ctsem-2.9.6/ctsem/R/ctKalman.R | 36 - ctsem-2.9.6/ctsem/R/ctLongtowide.r | 42 - ctsem-2.9.6/ctsem/R/ctModel.R | 2 ctsem-2.9.6/ctsem/R/ctModelFromFit.R | 2 ctsem-2.9.6/ctsem/R/ctModelLatex.R |only ctsem-2.9.6/ctsem/R/ctMultigroupFit.R | 6 ctsem-2.9.6/ctsem/R/ctPlotArray.R | 2 ctsem-2.9.6/ctsem/R/ctPostPredict.R | 1 ctsem-2.9.6/ctsem/R/ctStanContinuousPars.R | 2 ctsem-2.9.6/ctsem/R/ctStanFit.R | 418 ++++++------- ctsem-2.9.6/ctsem/R/ctStanGenerateFromFit.R |only ctsem-2.9.6/ctsem/R/ctStanModel.R | 28 ctsem-2.9.6/ctsem/R/ctStanModelWriter.R | 144 ++-- ctsem-2.9.6/ctsem/R/ctStanParMatrices.R | 2 ctsem-2.9.6/ctsem/R/ctStanPostPredict.R | 13 ctsem-2.9.6/ctsem/R/ctStanTIpredMarginal.R | 2 ctsem-2.9.6/ctsem/R/ctStanTIpredeffects.R | 2 ctsem-2.9.6/ctsem/R/ctStanUpdModel.R | 3 ctsem-2.9.6/ctsem/R/ctdataupdate.R | 152 ++++ ctsem-2.9.6/ctsem/R/ctsem.R | 8 ctsem-2.9.6/ctsem/R/isdiag.R | 2 ctsem-2.9.6/ctsem/R/listOfMatrices.R |only ctsem-2.9.6/ctsem/R/modelchecking.R | 2 ctsem-2.9.6/ctsem/R/optimstan.R | 101 +-- ctsem-2.9.6/ctsem/R/plot.ctStanFit.R | 9 ctsem-2.9.6/ctsem/R/plot.ctsemFit.R | 10 ctsem-2.9.6/ctsem/R/stanWplot.R | 12 ctsem-2.9.6/ctsem/R/stan_checkdivergences.R | 30 ctsem-2.9.6/ctsem/R/stan_unconstrainsamples.R | 2 ctsem-2.9.6/ctsem/R/summary.ctStanFit.R |only ctsem-2.9.6/ctsem/R/summary.ctsemFit.R | 6 ctsem-2.9.6/ctsem/build/vignette.rds |binary ctsem-2.9.6/ctsem/data/AnomAuth.rda |binary ctsem-2.9.6/ctsem/data/Oscillating.rda |binary ctsem-2.9.6/ctsem/data/ctExample1.rda |binary ctsem-2.9.6/ctsem/data/ctExample1TIpred.rda |binary ctsem-2.9.6/ctsem/data/ctExample2.rda |binary ctsem-2.9.6/ctsem/data/ctExample3.rda |binary ctsem-2.9.6/ctsem/data/ctExample4.rda |binary ctsem-2.9.6/ctsem/data/ctstantestdat.rda |binary ctsem-2.9.6/ctsem/data/ctstantestfit.rda |binary ctsem-2.9.6/ctsem/data/datastructure.rda |binary ctsem-2.9.6/ctsem/data/longexample.rda |binary ctsem-2.9.6/ctsem/inst/doc/ctsem.R | 2 ctsem-2.9.6/ctsem/inst/doc/ctsem.pdf |binary ctsem-2.9.6/ctsem/inst/doc/ctsem.rnw | 4 ctsem-2.9.6/ctsem/man/ctCI.Rd | 4 ctsem-2.9.6/ctsem/man/ctCheckFit.Rd | 7 ctsem-2.9.6/ctsem/man/ctExample2.Rd | 33 - ctsem-2.9.6/ctsem/man/ctExample4.Rd | 25 ctsem-2.9.6/ctsem/man/ctFit.Rd | 6 ctsem-2.9.6/ctsem/man/ctGenerateFromFit.Rd | 4 ctsem-2.9.6/ctsem/man/ctKalman.Rd | 2 ctsem-2.9.6/ctsem/man/ctLongToWide.Rd | 8 ctsem-2.9.6/ctsem/man/ctModel.Rd | 17 ctsem-2.9.6/ctsem/man/ctModelLatex.Rd |only ctsem-2.9.6/ctsem/man/ctMultigroupFit.Rd | 6 ctsem-2.9.6/ctsem/man/ctPlot.Rd | 4 ctsem-2.9.6/ctsem/man/ctPlotArray.Rd | 2 ctsem-2.9.6/ctsem/man/ctStanContinuousPars.Rd | 2 ctsem-2.9.6/ctsem/man/ctStanFit.Rd | 64 - ctsem-2.9.6/ctsem/man/ctStanGenerateFromFit.Rd |only ctsem-2.9.6/ctsem/man/ctStanModel.Rd | 10 ctsem-2.9.6/ctsem/man/ctStanParMatrices.Rd | 2 ctsem-2.9.6/ctsem/man/ctStanPostPredict.Rd | 6 ctsem-2.9.6/ctsem/man/ctStanTIpredMarginal.Rd | 2 ctsem-2.9.6/ctsem/man/ctStanTIpredeffects.Rd | 2 ctsem-2.9.6/ctsem/man/ctStanUpdModel.Rd | 2 ctsem-2.9.6/ctsem/man/ctstantestdat.Rd | 34 - ctsem-2.9.6/ctsem/man/ctstantestfit.Rd | 23 ctsem-2.9.6/ctsem/man/datastructure.Rd | 26 ctsem-2.9.6/ctsem/man/isdiag.Rd | 2 ctsem-2.9.6/ctsem/man/longexample.Rd | 22 ctsem-2.9.6/ctsem/man/optimstan.Rd | 13 ctsem-2.9.6/ctsem/man/plot.ctStanFit.Rd | 9 ctsem-2.9.6/ctsem/man/plot.ctsemFit.Rd | 6 ctsem-2.9.6/ctsem/man/plot.ctsemFitMeasure.Rd | 33 - ctsem-2.9.6/ctsem/man/stanWplot.Rd | 5 ctsem-2.9.6/ctsem/man/stan_checkdivergences.Rd | 15 ctsem-2.9.6/ctsem/man/stan_unconstrainsamples.Rd | 2 ctsem-2.9.6/ctsem/man/summary.ctStanFit.Rd | 4 ctsem-2.9.6/ctsem/man/summary.ctsemFit.Rd | 6 ctsem-2.9.6/ctsem/src/stan_files/ctsm.stan | 83 +- ctsem-2.9.6/ctsem/src/stan_files/ctsmgen.stan | 113 +-- ctsem-2.9.6/ctsem/tests/testthat/Rplots.pdf |only ctsem-2.9.6/ctsem/tests/testthat/test-ctRaschExampleTest.R |only ctsem-2.9.6/ctsem/tests/testthat/test-differenttraits.R |only ctsem-2.9.6/ctsem/tests/testthat/test-fixedvalsunspot.R |only ctsem-2.9.6/ctsem/tests/testthat/test-intervalise.R | 5 ctsem-2.9.6/ctsem/tests/testthat/test-kalmanVram.R |only ctsem-2.9.6/ctsem/tests/testthat/test-knownFits.R | 5 ctsem-2.9.6/ctsem/tests/testthat/test-nonlinearVlinear.R |only ctsem-2.9.6/ctsem/tests/testthat/test-runExamples.R |only ctsem-2.9.6/ctsem/tests/testthat/test-singleprocess.R |only ctsem-2.9.6/ctsem/tests/testthat/test-ukfpoptest.R |only ctsem-2.9.6/ctsem/tools/make_cc.R | 54 + ctsem-2.9.6/ctsem/vignettes/ctsem.rnw | 4 119 files changed, 1181 insertions(+), 1143 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.3.5 dated 2019-04-08 and 1.3.6 dated 2019-05-29
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/KFAS.pdf |binary src/declarations.h | 8 ++++---- src/kfilter2.f95 | 2 +- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Superpixel Image Segmentation
Description: Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://pdfs.semanticscholar.org/6533/654973054b742e725fd433265700c07b48a2.pdf>.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between SuperpixelImageSegmentation versions 1.0.0 dated 2018-12-30 and 1.0.1 dated 2019-05-29
DESCRIPTION | 10 ++++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/px_utils.R | 21 ++++++++++----------- README.md | 1 + man/Image_Segmentation.Rd | 9 +++------ src/superPx_AP_Kmeans_Segment.cpp | 2 +- 7 files changed, 33 insertions(+), 28 deletions(-)
More information about SuperpixelImageSegmentation at CRAN
Permanent link
Title: Meta-Analysis using Structural Equation Modeling
Description: A collection of functions for conducting meta-analysis using a
structural equation modeling (SEM) approach via the 'OpenMx' and
'lavaan' packages. It also implements various procedures to
perform meta-analytic structural equation modeling on the
correlation and covariance matrices.
Author: Mike W.-L. Cheung <mikewlcheung@nus.edu.sg>
Maintainer: Mike W.-L. Cheung <mikewlcheung@nus.edu.sg>
Diff between metaSEM versions 1.2.0 dated 2018-10-18 and 1.2.2 dated 2019-05-29
DESCRIPTION | 8 +- MD5 | 136 +++++++++++++++++++++++++------------------------ NEWS | 7 ++ R/as.mxMatrix.R | 107 +++++++++++++++++++++----------------- R/create.mxMatrix.R | 4 + R/create.mxModel.R |only R/osmasem.R | 2 R/rerun.R | 13 +++- R/tssem.R | 2 build/vignette.rds |binary data/Aloe14.rda |binary data/BCG.rda |binary data/Becker09.rda |binary data/Becker83.rda |binary data/Becker92.rda |binary data/Becker94.rda |binary data/Berkey98.rda |binary data/Boer16.rda |binary data/Bornmann07.rda |binary data/Cheung00.rda |binary data/Cheung09.rda |binary data/Cooke16.rda |binary data/Cooper03.rda |binary data/Digman97.rda |binary data/Gleser94.rda |binary data/Gnambs18.rda |binary data/HedgesOlkin85.rda |binary data/Hox02.rda |binary data/Hunter83.rda |binary data/Jaramillo05.rda |binary data/Mak09.rda |binary data/Nam03.rda |binary data/Nohe15A1.rda |binary data/Nohe15A2.rda |binary data/Norton13.rda |binary data/Roorda11.rda |binary data/Scalco17.rda |binary data/Stadler15.rda |only data/issp05.rda |binary data/issp89.rda |binary data/vanderPol17.rda |binary data/wvs94a.rda |binary data/wvs94b.rda |binary man/BCG.Rd | 4 - man/Becker09.Rd | 4 - man/Bornmann07.Rd | 4 - man/Cheung00.Rd | 2 man/Cor2DataFrame.Rd | 4 - man/Nam03.Rd | 4 - man/Scalco17.Rd | 2 man/Stadler15.Rd |only man/asyCov.Rd | 5 - man/checkRAM.Rd | 2 man/create.V.Rd | 2 man/create.mxModel.Rd |only man/create.vechsR.Rd | 10 +-- man/impliedR.Rd | 2 man/meta.Rd | 2 man/meta3.Rd | 2 man/metaSEM-package.Rd | 11 ++- man/osmasem.Rd | 8 ++ man/osmasemR2.Rd | 2 man/reml.Rd | 2 man/reml3.Rd | 4 - man/rerun.Rd | 3 - man/summary.Rd | 10 +-- man/tssem1.Rd | 4 - man/uniR2.Rd | 2 man/vanderPol17.Rd | 4 - man/wls.Rd | 4 - man/wvs94a.Rd | 2 71 files changed, 211 insertions(+), 173 deletions(-)
Title: Greenhouse Gas Flux Calculation from Chamber Measurements
Description: Functions for greenhouse gas flux calculation from chamber
measurements.
Author: Roland Fuss [aut, cre],
Roman Hueppi [ctb],
Asger R. Pedersen [cph] (for code copied from the not-exported
HMR:::.HMR.fit1 function (version 0.3.1))
Maintainer: Roland Fuss <roland.fuss@thuenen.de>
Diff between gasfluxes versions 0.4-2 dated 2019-03-20 and 0.4-3 dated 2019-05-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/gasfluxes.R | 5 +++-- build/vignette.rds |binary inst/doc/gasfluxes-howto.R | 2 +- inst/doc/gasfluxes-howto.Rmd | 2 +- inst/doc/gasfluxes-howto.html | 2 +- man/selectfluxes.Rd | 5 ++++- vignettes/gasfluxes-howto.Rmd | 2 +- 10 files changed, 32 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-27 0.6
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes limiting dilution analysis (aka ELDA), growth curve comparisons, mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Also includes a number of advanced generalized linear model functions including new Tweedie and Digamma glm families and a secure convergence algorithm.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.30 dated 2017-06-18 and 1.4.32 dated 2019-05-29
DESCRIPTION | 12 ++--- MD5 | 25 ++++++------ NAMESPACE | 2 R/glmgam.R | 8 +-- R/glmnb.R | 50 +++++++++++++++++++----- inst/NEWS | 12 +++++ man/fitNBP.Rd | 8 +++ man/glmgam.Rd | 39 ++++++++++--------- man/glmnbfit.Rd |only man/glmscoretest.Rd | 46 ++++++++++++++++------ man/qresiduals.Rd | 4 + man/sage.test.Rd | 17 +++++--- tests/statmod-Tests.R | 4 + tests/statmod-Tests.Rout.save | 86 ++++++++++++++++++++++++++++++------------ 14 files changed, 220 insertions(+), 93 deletions(-)
Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in console, txt, html or pdf pages. Download the whole documentation (html index, pdf manual, vignettes, source code, etc) with a single instruction. Visualize the package dependencies. Several functions for task view maintenance and exploration of CRAN archive. Quick links to more than 70 web search engines. Lazy evaluation of non-standard content is available throughout the package and eases the use of many functions.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>)
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>
Diff between RWsearch versions 4.5 dated 2019-03-27 and 4.6 dated 2019-05-29
RWsearch-4.5/RWsearch/inst/assets |only RWsearch-4.5/RWsearch/inst/templates |only RWsearch-4.6/RWsearch/DESCRIPTION | 12 RWsearch-4.6/RWsearch/MD5 | 123 - RWsearch-4.6/RWsearch/NAMESPACE | 335 +- RWsearch-4.6/RWsearch/NEWS | 102 RWsearch-4.6/RWsearch/R/a_intro.R | 59 RWsearch-4.6/RWsearch/R/archivedb.R |only RWsearch-4.6/RWsearch/R/cnsc.R | 2 RWsearch-4.6/RWsearch/R/crandb.R | 19 RWsearch-4.6/RWsearch/R/e_check.R | 2 RWsearch-4.6/RWsearch/R/funmaintext.R | 26 RWsearch-4.6/RWsearch/R/h_R.R | 11 RWsearch-4.6/RWsearch/R/h_direct.R | 10 RWsearch-4.6/RWsearch/R/h_engine.R | 65 RWsearch-4.6/RWsearch/R/n_graph.R |only RWsearch-4.6/RWsearch/R/p_deps.R |only RWsearch-4.6/RWsearch/R/p_display.R | 10 RWsearch-4.6/RWsearch/R/p_down.R | 38 RWsearch-4.6/RWsearch/R/p_inun.R | 45 RWsearch-4.6/RWsearch/R/p_table2pdf.R | 11 RWsearch-4.6/RWsearch/R/p_text2pdf.R | 65 RWsearch-4.6/RWsearch/R/s_sos.R | 2 RWsearch-4.6/RWsearch/R/s_tvdb.R |only RWsearch-4.6/RWsearch/R/tvdb.R | 2 RWsearch-4.6/RWsearch/build/vignette.rds |binary RWsearch-4.6/RWsearch/data/zcrandb.rda |binary RWsearch-4.6/RWsearch/inst/aabb |only RWsearch-4.6/RWsearch/inst/doc/RWsearch-1-Introduction.html | 1058 +++++---- RWsearch-4.6/RWsearch/inst/doc/RWsearch-2-Print-Download-Doc.html | 1008 +++++--- RWsearch-4.6/RWsearch/inst/doc/RWsearch-3-TaskViews.html | 969 +++++--- RWsearch-4.6/RWsearch/inst/doc/RWsearch-4-Web-search-engines.Rmd | 9 RWsearch-4.6/RWsearch/inst/doc/RWsearch-4-Web-search-engines.html | 1162 +++++----- RWsearch-4.6/RWsearch/man/RWsearch-package.Rd | 209 - RWsearch-4.6/RWsearch/man/archivedb.Rd |only RWsearch-4.6/RWsearch/man/cnsc.Rd | 92 RWsearch-4.6/RWsearch/man/crandb.Rd | 184 - RWsearch-4.6/RWsearch/man/e_check.Rd | 62 RWsearch-4.6/RWsearch/man/f_args.Rd | 84 RWsearch-4.6/RWsearch/man/f_pdf.Rd | 52 RWsearch-4.6/RWsearch/man/funmaintext.Rd | 134 - RWsearch-4.6/RWsearch/man/h_R.Rd | 143 - RWsearch-4.6/RWsearch/man/h_direct.Rd | 115 RWsearch-4.6/RWsearch/man/h_engine.Rd | 482 ++-- RWsearch-4.6/RWsearch/man/h_ttp.Rd | 54 RWsearch-4.6/RWsearch/man/n_graph.Rd |only RWsearch-4.6/RWsearch/man/p_deps.Rd |only RWsearch-4.6/RWsearch/man/p_display.Rd | 120 - RWsearch-4.6/RWsearch/man/p_down.Rd | 172 - RWsearch-4.6/RWsearch/man/p_html.Rd | 192 - RWsearch-4.6/RWsearch/man/p_inun.Rd | 88 RWsearch-4.6/RWsearch/man/p_table2pdf.Rd | 240 +- RWsearch-4.6/RWsearch/man/p_text2pdf.Rd | 256 +- RWsearch-4.6/RWsearch/man/s_crandb.Rd | 236 +- RWsearch-4.6/RWsearch/man/s_crandb_tvdb.Rd | 200 - RWsearch-4.6/RWsearch/man/s_hs.Rd | 88 RWsearch-4.6/RWsearch/man/s_sos.Rd | 84 RWsearch-4.6/RWsearch/man/s_tvdb.Rd |only RWsearch-4.6/RWsearch/man/tvdb.Rd | 174 - RWsearch-4.6/RWsearch/man/zcrandb.Rd | 40 RWsearch-4.6/RWsearch/man/ztvdb.Rd | 32 RWsearch-4.6/RWsearch/vignettes/RWsearch-4-Web-search-engines.Rmd | 9 62 files changed, 4921 insertions(+), 3766 deletions(-)
Title: Confirmatory Adaptive Clinical Trial Design and Analysis
Description: Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2016) <doi:10.1007/978-3-319-32562-0>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.
Author: Gernot Wassmer [aut],
Friedrich Pahlke [aut, cre]
Maintainer: Friedrich Pahlke <friedrich.pahlke@rpact.com>
Diff between rpact versions 2.0.0 dated 2019-05-28 and 2.0.1 dated 2019-05-29
DESCRIPTION | 8 MD5 | 14 - NEWS.md | 6 R/f_core_plot.R | 2 R/f_design_sample_size_calculator.R | 470 +++++++++++++++++++++--------------- R/f_simulation_survival.R | 5 src/RcppExports.cpp | 2 src/f_simulation_survival.cpp | 7 8 files changed, 302 insertions(+), 212 deletions(-)
Title: A Shiny Application for Automatic Measurements of Tree-Ring
Widths on Digital Images
Description: Use morphological image processing and edge detection algorithms to automatically measure tree ring widths on digital images. Users can also manually mark tree rings on species with complex anatomical structures. The arcs of inner-rings and angles of successive inclined ring boundaries are used to correct ring-width series. The package provides a Shiny-based application, allowing R beginners to easily analyze tree ring images and export ring-width series in standard file formats.
Author: Jingning Shi [aut, cre],
Wei Xiang [aut]
Maintainer: Jingning Shi <snow940220@bjfu.edu.cn>
Diff between MtreeRing versions 1.3 dated 2019-05-22 and 1.3.1 dated 2019-05-29
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 2 ++ R/pith_measure.R | 1 - R/ring_detect.R | 1 - README.md | 8 ++------ 6 files changed, 12 insertions(+), 16 deletions(-)
Title: Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Description: This natural language processing toolkit provides language-agnostic
'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency
parsing' of raw text. Next to text parsing, the package also allows you to train
annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided
at <http://universaldependencies.org/format.html>. The techniques are explained
in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0
with UDPipe', available at <doi:10.18653/v1/K17-3009>.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Institute of Formal and Applied Linguistics, Faculty of Mathematics and
Physics, Charles University in Prague, Czech Republic [cph],
Milan Straka [ctb, cph],
Jana Straková [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between udpipe versions 0.8.1 dated 2019-02-15 and 0.8.2 dated 2019-05-29
DESCRIPTION | 8 MD5 | 77 NAMESPACE | 1 NEWS.md | 10 R/nlp_flow.R | 101 + R/sentiment.R | 34 R/udpipe_models.R | 38 R/udpipe_parse.R | 97 + R/udpipe_train.R | 9 build/vignette.rds |binary inst/doc/udpipe-annotation.R | 26 inst/doc/udpipe-annotation.Rmd | 9 inst/doc/udpipe-annotation.html | 1299 ++++++++++++++++ inst/doc/udpipe-parallel.R |only inst/doc/udpipe-parallel.Rmd |only inst/doc/udpipe-parallel.html |only inst/doc/udpipe-train.html | 1295 ++++++++++++++++ inst/doc/udpipe-tryitout.R | 16 inst/doc/udpipe-tryitout.Rmd | 11 inst/doc/udpipe-tryitout.html | 221 ++ inst/doc/udpipe-usecase-postagging-lemmatisation.R | 9 inst/doc/udpipe-usecase-postagging-lemmatisation.Rmd | 11 inst/doc/udpipe-usecase-postagging-lemmatisation.html | 1283 ++++++++++++++++ inst/doc/udpipe-usecase-topicmodelling.R | 9 inst/doc/udpipe-usecase-topicmodelling.Rmd | 11 inst/doc/udpipe-usecase-topicmodelling.html | 1394 +++++++++++++++++- man/as.data.frame.udpipe_connlu.Rd | 9 man/dtm_remove_lowfreq.Rd | 10 man/dtm_remove_sparseterms.Rd |only man/dtm_remove_terms.Rd | 15 man/dtm_remove_tfidf.Rd | 10 man/txt_sentiment.Rd | 32 man/udpipe.Rd | 18 man/udpipe_accuracy.Rd | 9 man/udpipe_annotate.Rd | 10 man/udpipe_download_model.Rd | 7 man/udpipe_load_model.Rd | 16 vignettes/udpipe-annotation.Rmd | 9 vignettes/udpipe-parallel.Rmd |only vignettes/udpipe-tryitout.Rmd | 11 vignettes/udpipe-usecase-postagging-lemmatisation.Rmd | 11 vignettes/udpipe-usecase-topicmodelling.Rmd | 11 42 files changed, 5833 insertions(+), 314 deletions(-)
Title: Tools for Temporal Social Network Analysis
Description: Temporal SNA tools for continuous- and discrete-time longitudinal networks having vertex, edge, and attribute dynamics stored in the 'networkDynamic' format. This work was supported by grant R01HD68395 from the National Institute of Health.
Author: Skye Bender-deMoll [aut, cre],
Martina Morris [aut],
James Moody [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between tsna versions 0.2.0 dated 2016-03-25 and 0.3.0 dated 2019-05-29
ChangeLog | 3 DESCRIPTION | 10 MD5 | 21 - R/summaryStats.R | 8 README.md |only build/vignette.rds |binary inst/doc/tsna_vignette.Rmd | 8 inst/doc/tsna_vignette.html | 626 ++++++++++++++++++++++++++------------------ man/moodyContactSim.Rd | 2 man/pShiftCount.Rd | 2 man/tErgmStats.Rd | 4 vignettes/tsna_vignette.Rmd | 8 12 files changed, 411 insertions(+), 281 deletions(-)
Title: Utilities for Learning Sparse Bayesian Networks
Description: A set of tools for representing and estimating sparse Bayesian networks from continuous and discrete data, as described in Aragam, Gu, and Zhou (2017) <arXiv:1703.04025>.
Author: Bryon Aragam [aut, cre],
Jiaying Gu [aut]
Maintainer: Bryon Aragam <sparsebn@gmail.com>
Diff between sparsebnUtils versions 0.0.6 dated 2018-03-16 and 0.0.7 dated 2019-05-29
sparsebnUtils-0.0.6/sparsebnUtils/tests/testthat/test-compatibility.R |only sparsebnUtils-0.0.7/sparsebnUtils/DESCRIPTION | 12 - sparsebnUtils-0.0.7/sparsebnUtils/MD5 | 68 +++---- sparsebnUtils-0.0.7/sparsebnUtils/NEWS.md | 4 sparsebnUtils-0.0.7/sparsebnUtils/R/s3-sparse.R | 2 sparsebnUtils-0.0.7/sparsebnUtils/R/sparsebnUtils-cytoscape.R | 18 + sparsebnUtils-0.0.7/sparsebnUtils/R/sparsebnUtils-generate.R | 97 +++++----- sparsebnUtils-0.0.7/sparsebnUtils/man/edgeList.Rd | 1 sparsebnUtils-0.0.7/sparsebnUtils/man/generate.lambdas.Rd | 4 sparsebnUtils-0.0.7/sparsebnUtils/man/get.lambdas.Rd | 2 sparsebnUtils-0.0.7/sparsebnUtils/man/get.nodes.Rd | 2 sparsebnUtils-0.0.7/sparsebnUtils/man/openCytoscape.Rd | 4 sparsebnUtils-0.0.7/sparsebnUtils/man/random.dag.Rd | 12 - sparsebnUtils-0.0.7/sparsebnUtils/man/random.graph.Rd | 7 sparsebnUtils-0.0.7/sparsebnUtils/man/random.spd.Rd | 4 sparsebnUtils-0.0.7/sparsebnUtils/man/sparse.Rd | 1 sparsebnUtils-0.0.7/sparsebnUtils/man/sparsebnData.Rd | 4 sparsebnUtils-0.0.7/sparsebnUtils/man/sparsebnFit.Rd | 1 sparsebnUtils-0.0.7/sparsebnUtils/man/sparsebnPath.Rd | 1 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-as.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-cor_vector.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-fit_multinom_dag.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-get_adjacency_matrix.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-graphNEL.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-inference.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-list_classes.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-num_edges.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-num_nodes.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-random_dag.R | 25 ++ sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-random_graph.R | 19 + sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-select.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-setGraphPackage.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-show_parents.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-sparsebnData.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-sparsebnFit.R | 4 sparsebnUtils-0.0.7/sparsebnUtils/tests/testthat/test-x-compatibility.R |only 36 files changed, 230 insertions(+), 114 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with spatial-
temporal data together with corresponding functions and methods (conversions,
basic calculations and basic data manipulation). The class distinguishes
between spatial, temporal and other dimensions to facilitate the development
and interoperability of tools build for it. Additional features are name-based
addressing of data and internal consistency checks (e.g. checking for the right
data order in calculations).
Author: Jan Philipp Dietrich [aut, cre],
Benjamin Leon Bodirsky [aut],
Markus Bonsch [aut],
Florian Humpenoeder [aut],
Stephen Bi [aut],
Kristine Karstens [aut],
Lavinia Baumstark [ctb],
Christoph Bertram [ctb],
Anastasis Giannousakis [ctb],
David Klein [ctb],
Ina Neher [ctb],
Michaja Pehl [ctb],
Anselm Schultes [ctb],
Miodrag Stevanovic [ctb],
Xiaoxi Wang [ctb]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 4.51.1 dated 2017-09-06 and 4.107.0 dated 2019-05-29
DESCRIPTION | 64 - MD5 | 164 +-- NAMESPACE | 12 R/add_columns.R | 3 R/are_units_convertible.R |only R/as.magpie.R | 35 R/calibrate_it.R | 1 R/clean_magpie.R | 157 +-- R/colMeans-method.R | 5 R/colSums-method.R | 5 R/collapseNames.R | 2 R/complete_magpie.R | 1 R/copy.magpie.R | 8 R/dimCode.R | 109 +- R/dimOrder.R | 1 R/dimReduce.R | 3 R/dimSums.R | 1 R/getItems.R | 16 R/getMetadata.R |only R/install_magpie_units.R |only R/is_unit_installed.R |only R/lowpass.R | 15 R/magclass-package.R | 20 R/magpie-class.R | 10 R/magpie_expand.R | 210 ++++ R/magpply.R | 3 R/mbind.R | 19 R/mbind2.R | 2 R/mcalc.R | 4 R/mselect.R | 1 R/new.magpie.R | 6 R/ops-method.R | 169 +++ R/place_x_in_y.R | 1 R/print.magpie.R | 8 R/read.magpie.R | 1342 +++++++++++++++++----------- R/read.report.R | 290 +++--- R/remind2magpie.R | 3 R/rowMeans-method.R | 6 R/rowSums-method.R | 6 R/set_magpie_units.R |only R/sizeCheck.R |only R/sysdata.rda |binary R/tidy2magpie.R | 4 R/time_interpolate.R | 2 R/units.magpie.R |only R/updateMetadata.R |only R/withMetadata.R |only R/write.magpie.R | 177 ++- R/write.magpie.ncdf.R |only R/write.report.R | 14 R/write.report2.R | 9 R/write.reportProject.R | 25 README.md | 12 build/vignette.rds |binary data/population_magpie.rda |binary inst/CITATION |only inst/doc/magclass-concept.html | 635 +++++-------- inst/doc/magclass.html | 1606 ++++++++++++++-------------------- man/are_units_convertible.Rd |only man/convert.report.Rd | 4 man/copy.attributes.Rd | 5 man/copy.magpie.Rd | 5 man/dimCode.Rd | 6 man/getCells.Rd | 2 man/getComment.Rd | 2 man/getItems.Rd | 8 man/getMetadata.Rd |only man/getNames.Rd | 1 man/getRegionList.Rd | 1 man/getRegions.Rd | 1 man/getSets.Rd | 1 man/getYears.Rd | 2 man/install_magpie_units.Rd |only man/is_unit_installed.Rd |only man/lowpass.Rd | 9 man/magclass-package.Rd | 20 man/magpie-class.Rd | 2 man/magpie_expand.Rd | 7 man/mselect.Rd | 1 man/ncells.Rd | 3 man/new.magpie.Rd | 4 man/read.magpie.Rd | 24 man/set_magpie_units.Rd |only man/sizeCheck.Rd |only man/units-set-.magpie.Rd |only man/updateMetadata.Rd |only man/withMetadata.Rd |only man/write.magpie.Rd | 34 man/write.magpie.ncdf.Rd |only man/write.reportProject.Rd | 5 tests/testthat/test-as.magpie.R | 25 tests/testthat/test-readwritemagpie.R | 32 tests/testthat/test-travisCI.R |only vignettes/magclass-concept.md |only vignettes/magclass.md |only 95 files changed, 3003 insertions(+), 2387 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string manipulation.
Since then, the 'fs' and 'strex' packages emerged, offering functionality
previously given by this package (but it's done better in these new ones).
Those packages have hence almost pushed 'filesstrings' into extinction.
However, it still has a small number of unique, handy file manipulation
functions which can be seen in the vignette.
One example is a function to remove spaces from all file names in a
directory.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.1.1 dated 2019-05-14 and 3.1.2 dated 2019-05-29
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/all-equal.R | 41 ++++++++++++++++++++++++++++++++--------- R/str-pad.R | 4 +++- build/partial.rdb |binary inst/doc/files.html | 4 ++-- man/all_equal.Rd | 4 +++- 8 files changed, 56 insertions(+), 23 deletions(-)
Title: Chaotic Time Series Analysis
Description: Provides several algorithms for the purpose of detecting chaotic signals inside univariate time series. We focus on methods derived from chaos theory which estimate the complexity of a dataset through exploring the structure of the attractor. We have taken into account the Lyapunov exponents as an ergodic measure. We have implemented the Jacobian method by a fit through neural networks in order to estimate both the largest and the spectrum of Lyapunov exponents. We have considered the full sample and three different methods of subsampling by blocks (non-overlapping, equally spaced and bootstrap) to estimate them. In addition, it is possible to make inference about them and know if the estimated Lyapunov exponents values are or not statistically significant. This library can be used with time series whose time-lapse is fixed or variable. That is, it considers time series whose observations are sampled at fixed or variable time intervals. For a review see David Ruelle and Floris Takens (1971) <doi:10.1007/BF01646553>, Ramazan Gencay and W. Davis Dechert (1992) <doi:10.1016/0167-2789(92)90210-E>, Jean-Pierre Eckmann and David Ruelle (1995) <doi:10.1103/RevModPhys.57.617>, Mototsugu Shintani and Oliver Linton (2004) <doi:10.1016/S0304-4076(03)00205-7>, Jeremy P. Huke and David S. Broomhead (2007) <doi:10.1088/0951-7715/20/9/011>.
Author: Julio E. Sandubete [aut, cre],
Lorenzo Escot [aut]
Maintainer: Julio E. Sandubete <jsandube@ucm.es>
Diff between DChaos versions 0.1-1 dated 2019-04-14 and 0.1-2 dated 2019-05-29
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/jacobi.R | 9 +++++++-- R/lyapunov.max.R | 8 ++++---- R/lyapunov.spec.R | 10 +++++----- 5 files changed, 26 insertions(+), 21 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.9 dated 2019-05-19 and 3.2.10 dated 2019-05-29
rscala-3.2.10/rscala/DESCRIPTION | 10 rscala-3.2.10/rscala/MD5 | 42 - rscala-3.2.10/rscala/NAMESPACE | 3 rscala-3.2.10/rscala/NEWS | 10 rscala-3.2.10/rscala/R/scala.R | 11 rscala-3.2.10/rscala/R/scalaConfig.R | 51 - rscala-3.2.10/rscala/R/scalaSBT.R | 292 ++++++---- rscala-3.2.10/rscala/R/sysdata.rda |binary rscala-3.2.10/rscala/README.md | 2 rscala-3.2.10/rscala/inst/data-raw/urls.txt | 64 +- rscala-3.2.10/rscala/inst/doc/rscala.Rnw | 2 rscala-3.2.10/rscala/inst/doc/rscala.pdf |binary rscala-3.2.10/rscala/inst/java/scala-2.11/rscala.jar |only rscala-3.2.10/rscala/inst/java/scala-2.12/rscala.jar |only rscala-3.2.10/rscala/inst/java/scala-2.13.0-RC2/rscala.jar |only rscala-3.2.10/rscala/inst/rstudio/addins.dcf | 6 rscala-3.2.10/rscala/java/rscala-source.jar |only rscala-3.2.10/rscala/java/rscala_2.12-3.2.10-SNAPSHOT-sources.jar |only rscala-3.2.10/rscala/man/scalaConfig.Rd | 8 rscala-3.2.10/rscala/man/scalaDevelDeployJARs.Rd |only rscala-3.2.10/rscala/man/scalaSBT.Rd | 21 rscala-3.2.10/rscala/vignettes/rscala.Rnw | 2 rscala-3.2.9/rscala/R/scalaSBTBuildInstallRestart.R |only rscala-3.2.9/rscala/inst/java/scala-2.11/rscala_2.11-3.2.9.jar |only rscala-3.2.9/rscala/inst/java/scala-2.12/rscala_2.12-3.2.9.jar |only rscala-3.2.9/rscala/inst/java/scala-2.13.0-RC2/rscala_2.13.0-RC2-3.2.9.jar |only rscala-3.2.9/rscala/java/rscala_2.12-3.2.9-sources.jar |only rscala-3.2.9/rscala/man/scalaSBTBuildInstallRestart.Rd |only 28 files changed, 313 insertions(+), 211 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods. Methodological details are given in Kastner and Frühwirth-Schnatter (2014) <doi:10.1016/j.csda.2013.01.002>; the most common use cases are described in Kastner (2016) <doi:10.18637/jss.v069.i05>. Also incorporates SV with leverage.
Author: Gregor Kastner [aut] (<https://orcid.org/0000-0002-8237-8271>),
Darjus Hosszejni [aut, cre] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Darjus Hosszejni <darjus.hosszejni@wu.ac.at>
Diff between stochvol versions 2.0.2 dated 2019-03-27 and 2.0.3 dated 2019-05-29
DESCRIPTION | 6 - MD5 | 46 ++++++------- NEWS | 7 ++ R/exports.R | 4 - R/plotting.R | 56 ++++++++-------- R/utilities_svdraws.R | 12 +-- R/wrappers.R | 161 ++++++++++++++++++++++++++--------------------- inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary inst/include/stochvol.h | 8 +- man/svlsample.Rd | 10 +- man/svlsample2.Rd | 8 +- man/svsample.Rd | 10 +- man/svsample2.Rd | 12 +-- man/updatesummary.Rd | 6 - src/exports.cpp | 11 +-- src/sampler.cpp | 23 +++--- src/sampler.h | 3 src/theta-sampler.cpp | 30 ++++++++ src/theta-sampler.h | 16 ++++ src/theta-utils.cpp | 53 ++++++++++++++- src/theta-utils.h | 19 +++++ src/update_functions.cpp | 19 ++--- src/update_functions.h | 3 24 files changed, 334 insertions(+), 189 deletions(-)
Title: Shadow Text Grob and Layer
Description: Implement shadowtextGrob() for 'grid' and geom_shadowtext() layer for 'ggplot2'.
These functions create/draw text grob with background shadow.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between shadowtext versions 0.0.4 dated 2018-12-07 and 0.0.5 dated 2019-05-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + R/geom-shadowtext.R | 1 + build/vignette.rds |binary inst/doc/shadowtext.html | 8 ++++---- 6 files changed, 15 insertions(+), 13 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports
Cox-PH, proportional odds, and accelerated failure time models. Allows for
semi and fully parametric models (parametric only for accelerated failure
time models) and Bayesian parametric models. Includes functions for easy visual
diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 2.0.9 dated 2018-10-15 and 2.0.10 dated 2019-05-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 4 ++++ R/ic_bayes.R | 3 ++- R/ic_par.R | 3 ++- R/ic_sp.R | 3 ++- R/user_utilities.R | 18 ++++++++++++------ build/vignette.rds |binary inst/doc/icenReg.pdf |binary man/ic_sample.Rd | 4 +++- 10 files changed, 38 insertions(+), 23 deletions(-)
Title: Fit Text Inside a Box in 'ggplot2'
Description: Provides 'ggplot2' geoms to fit text into a box by growing, shrinking
or wrapping the text.
Author: David Wilkins [aut, cre]
Maintainer: David Wilkins <david@wilkox.org>
Diff between ggfittext versions 0.6.0 dated 2018-07-06 and 0.7.0 dated 2019-05-29
ggfittext-0.6.0/ggfittext/tests/testthat/test-ggtextfit.R |only ggfittext-0.7.0/ggfittext/DESCRIPTION | 11 ggfittext-0.7.0/ggfittext/MD5 | 40 - ggfittext-0.7.0/ggfittext/NEWS.md | 87 +- ggfittext-0.7.0/ggfittext/R/geom_fit_text.R | 195 +++--- ggfittext-0.7.0/ggfittext/R/ggfittext.R | 2 ggfittext-0.7.0/ggfittext/README.md | 51 + ggfittext-0.7.0/ggfittext/build/vignette.rds |binary ggfittext-0.7.0/ggfittext/inst/doc/introduction-to-ggfittext.R | 9 ggfittext-0.7.0/ggfittext/inst/doc/introduction-to-ggfittext.Rmd | 44 - ggfittext-0.7.0/ggfittext/inst/doc/introduction-to-ggfittext.html | 295 +++++----- ggfittext-0.7.0/ggfittext/man/figures/README-doesnt_fit-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-geom_fit_text_2-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-geom_fit_text_3-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-heatmap-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-hero-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-reflow-1.png |binary ggfittext-0.7.0/ggfittext/man/figures/README-reflow_and_grow-1.png |binary ggfittext-0.7.0/ggfittext/man/geom_fit_text.Rd | 94 +-- ggfittext-0.7.0/ggfittext/man/ggfittext.Rd | 2 ggfittext-0.7.0/ggfittext/tests/testthat/test-geom_fit_text.R |only ggfittext-0.7.0/ggfittext/vignettes/introduction-to-ggfittext.Rmd | 44 - 22 files changed, 484 insertions(+), 390 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-28 1.0.1