Title: Variable Table
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@fullerton.edu>
Diff between vtable versions 0.4.0 dated 2019-04-11 and 0.4.1 dated 2019-05-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/vtable.R | 4 ++-- inst/doc/vtable.html | 4 ++-- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Compute Viewshed in 3D Terrestrial Laser Scanner Scenes of
Ecosystems
Description: A set of tools to compute viewshed in 3D from Terrestrial Laser Scanner data and prepare the data prior to visibility calculation.
Author: Bastien Lecigne [aut, cre],
Jan Eitel [aut]
Maintainer: Bastien Lecigne <lecignebastien@gmail.com>
Diff between viewshed3d versions 1.0.0 dated 2018-12-09 and 2.0.0 dated 2019-05-30
viewshed3d-1.0.0/viewshed3d/R/viewpar.R |only viewshed3d-1.0.0/viewshed3d/man/view.par.Rd |only viewshed3d-2.0.0/viewshed3d/DESCRIPTION | 11 - viewshed3d-2.0.0/viewshed3d/MD5 | 21 +-- viewshed3d-2.0.0/viewshed3d/NAMESPACE | 3 viewshed3d-2.0.0/viewshed3d/R/Globalenv.R |only viewshed3d-2.0.0/viewshed3d/R/cum.sum.R |only viewshed3d-2.0.0/viewshed3d/R/reconstructgroundpar.R | 2 viewshed3d-2.0.0/viewshed3d/R/reshapescene.R | 5 viewshed3d-2.0.0/viewshed3d/R/view.R | 120 ++++++++---------- viewshed3d-2.0.0/viewshed3d/man/cum.view.Rd |only viewshed3d-2.0.0/viewshed3d/man/reshape.scene.Rd | 14 ++ viewshed3d-2.0.0/viewshed3d/man/view.Rd | 19 -- viewshed3d-2.0.0/viewshed3d/man/viewshed3d-package.Rd | 2 14 files changed, 98 insertions(+), 99 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation (ODE) models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
VODE and LSODA are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut] (<https://orcid.org/0000-0001-8538-6691>),
Melissa Hallow [aut],
Wenping Wang [aut, cre],
Zufar Mulyukov [ctb],
Justin Wilkins [ctb] (<https://orcid.org/0000-0002-7099-9396>),
Simon Frost [ctb],
Heng Li [ctb],
Yu Feng [ctb],
Alan Hindmarsh [ctb],
Linda Petzold [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
J Colinge [ctb],
Hadley Wickham [ctb],
G Grothendieck [ctb],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
R core team [cph],
odepack authors [cph]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between RxODE versions 0.8.0-9 dated 2018-12-10 and 0.9.0-6 dated 2019-05-30
RxODE-0.8.0-9/RxODE/R/eventTable.R |only RxODE-0.8.0-9/RxODE/R/focei2.R |only RxODE-0.8.0-9/RxODE/inst/TODO.txt |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-mix-lin-ode.R |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-mix-lin-ode.Rmd |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-mix-lin-ode.html |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-sim-var.R |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-sim-var.Rmd |only RxODE-0.8.0-9/RxODE/inst/doc/RxODE-sim-var.html |only RxODE-0.8.0-9/RxODE/inst/ode.c |only RxODE-0.8.0-9/RxODE/man/cholSE.Rd |only RxODE-0.8.0-9/RxODE/man/coxBox.Rd |only RxODE-0.8.0-9/RxODE/man/dot-rxRtoolsBaseWin.Rd |only RxODE-0.8.0-9/RxODE/man/foceiFitCpp_.Rd |only RxODE-0.8.0-9/RxODE/man/rxPrint.Rd |only RxODE-0.8.0-9/RxODE/man/rxThetaEta.Rd |only RxODE-0.8.0-9/RxODE/man/sqrtm.Rd |only RxODE-0.8.0-9/RxODE/man/yeoJohnson.Rd |only RxODE-0.8.0-9/RxODE/src/RxODE.h |only RxODE-0.8.0-9/RxODE/src/eventTable.cpp |only RxODE-0.8.0-9/RxODE/src/inner.cpp |only RxODE-0.8.0-9/RxODE/src/lbfgsR.c |only 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RxODE-0.9.0-6/RxODE/inst/doc/RxODE-events.R |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-events.Rmd | 852 + RxODE-0.9.0-6/RxODE/inst/doc/RxODE-events.html | 1605 ++ RxODE-0.9.0-6/RxODE/inst/doc/RxODE-intro.R | 25 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-intro.Rmd | 57 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-intro.html | 1076 - RxODE-0.9.0-6/RxODE/inst/doc/RxODE-model-types.R |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-model-types.Rmd |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-model-types.html |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-rxUse.Rmd |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-rxUse.html |only RxODE-0.9.0-6/RxODE/inst/doc/RxODE-shiny.Rmd | 1 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-shiny.html | 348 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-stiff.R | 8 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-stiff.Rmd | 11 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-stiff.html | 710 - RxODE-0.9.0-6/RxODE/inst/doc/RxODE-syntax.R | 5 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-syntax.Rmd | 76 RxODE-0.9.0-6/RxODE/inst/doc/RxODE-syntax.html | 490 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|only RxODE-0.9.0-6/RxODE/src/etTran.cpp |only RxODE-0.9.0-6/RxODE/src/init.c | 188 RxODE-0.9.0-6/RxODE/src/install.libs.R | 4 RxODE-0.9.0-6/RxODE/src/lincmt.c | 550 RxODE-0.9.0-6/RxODE/src/ode.h | 14 RxODE-0.9.0-6/RxODE/src/omegaChol.c | 460 RxODE-0.9.0-6/RxODE/src/opkda1_abbr.f | 9 RxODE-0.9.0-6/RxODE/src/opkda2.f | 12 RxODE-0.9.0-6/RxODE/src/par_solve.c | 1655 ++ RxODE-0.9.0-6/RxODE/src/rxData.cpp | 2164 ++- RxODE-0.9.0-6/RxODE/src/rxInv.cpp | 51 RxODE-0.9.0-6/RxODE/src/rxStack.cpp |only RxODE-0.9.0-6/RxODE/src/tran.c | 3734 +++--- RxODE-0.9.0-6/RxODE/src/tran.g.d_parser.c | 6683 +++++------ RxODE-0.9.0-6/RxODE/tests/testthat/model_default.txt |only RxODE-0.9.0-6/RxODE/tests/testthat/test-100-cmt.R | 4 RxODE-0.9.0-6/RxODE/tests/testthat/test-alag.R |only RxODE-0.9.0-6/RxODE/tests/testthat/test-backward.R | 222 RxODE-0.9.0-6/RxODE/tests/testthat/test-bioavailibility.R |only RxODE-0.9.0-6/RxODE/tests/testthat/test-cmt-order.R |only RxODE-0.9.0-6/RxODE/tests/testthat/test-cov.R | 76 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Title: Recursive Partitioning for Modeling Survey Data
Description: Functions to allow users to build and analyze design consistent
tree and random forest models using survey data from a complex sample
design. The algorithm can fit a linear model to survey data in each
node obtained by recursively partitioning the data. The splitting
variables and selected splits are obtained using a randomized permutation
test procedure which adjusted for complex sample design features used to
obtain the data. Likewise the model fitting algorithm produces
design-consistent coefficients to any specified least squares linear model
between the dependent and independent variables used in the end nodes.
The main functions return the resulting binary tree or random forest as
an object of "rpms" or "rpms_forest" type. The package also provides a number
of functions and methods available for use with these object types.
Author: Daniell Toth [aut, cre]
Maintainer: Daniell Toth <danielltoth@yahoo.com>
Diff between rpms versions 0.3.0 dated 2018-05-06 and 0.4.0 dated 2019-05-30
rpms-0.3.0/rpms/R/main_18_04_20.R |only rpms-0.3.0/rpms/R/qtree_18_02_02.R |only rpms-0.3.0/rpms/src/model_funtions_2018_01_18.cpp |only rpms-0.3.0/rpms/src/variable_tests_2018_04_07.cpp |only rpms-0.4.0/rpms/DESCRIPTION | 33 +++++++------ rpms-0.4.0/rpms/MD5 | 43 +++++++++-------- rpms-0.4.0/rpms/NAMESPACE | 2 rpms-0.4.0/rpms/R/RcppExports.R | 8 +++ rpms-0.4.0/rpms/R/extend_19_04_20.R |only rpms-0.4.0/rpms/R/main_18_08_20.R |only rpms-0.4.0/rpms/R/qtree_18_08_20.R |only rpms-0.4.0/rpms/R/rpms.R | 4 - rpms-0.4.0/rpms/R/sfun_rpm_18_04_20.R | 2 rpms-0.4.0/rpms/build/vignette.rds |binary rpms-0.4.0/rpms/inst/News.md | 10 +++ rpms-0.4.0/rpms/inst/doc/rpms_2018_01_22.R | 1 rpms-0.4.0/rpms/inst/doc/rpms_2018_01_22.pdf |binary rpms-0.4.0/rpms/man/Wtest.Rd | 4 - rpms-0.4.0/rpms/man/predict.rpms_forest.Rd |only rpms-0.4.0/rpms/man/qtree.Rd | 6 +- rpms-0.4.0/rpms/man/rpms-package.Rd | 4 - rpms-0.4.0/rpms/man/rpms.Rd | 8 +-- rpms-0.4.0/rpms/man/rpms_forest.Rd |only rpms-0.4.0/rpms/man/survLm.Rd | 2 rpms-0.4.0/rpms/src/RcppExports.cpp | 29 +++++++++++ rpms-0.4.0/rpms/src/model_functions_2019_05_16.cpp |only rpms-0.4.0/rpms/src/splitting_functions_2018_01_18.cpp | 41 +++++++++++----- rpms-0.4.0/rpms/src/variable_tests_2018_11_23.cpp |only 28 files changed, 136 insertions(+), 61 deletions(-)
Title: A Modular, Integrated Approach to Maximum Entropy Distribution
Modeling
Description: Tools for training, selecting, and evaluating maximum entropy
(and standard logistic regression) distribution models. This package
provides tools for user-controlled transformation of explanatory variables,
selection of variables by nested model comparison, and flexible model
evaluation and projection. It follows principles based on the maximum-
likelihood interpretation of maximum entropy modeling, and uses infinitely-
weighted logistic regression for model fitting.
Author: Julien Vollering [aut, cre],
Sabrina Mazzoni [aut],
Rune Halvorsen [aut],
Steven Phillips [cph]
Maintainer: Julien Vollering <julien.vollering@hvl.no>
Diff between MIAmaxent versions 1.0.0 dated 2018-11-13 and 1.1.0 dated 2019-05-30
DESCRIPTION | 11 +++---- MD5 | 42 +++++++++++++-------------- NEWS.md | 13 +++++++- R/MIAmaxent.R | 6 +-- R/compare.R | 19 +++++------- R/deriveVars.R | 10 +++--- R/plotFOP.R | 45 ++++++++++++++++++++--------- R/projectModel.R | 12 ++++++- R/readData.R | 17 +++++------ R/testAUC.R | 2 - README.md | 4 +- build/vignette.rds |binary inst/doc/a-modeling-example.html | 51 ++++++++++++++++++++++++--------- inst/doc/a-modeling-example.html.asis | 2 - man/MIAmaxent.Rd | 6 +-- man/deriveVars.Rd | 10 +++--- man/figures/workflow-flowchart.pdf |binary man/figures/workflow-flowchart.png |binary man/plotFOP.Rd | 20 +++++++++--- man/readData.Rd | 17 +++++------ man/testAUC.Rd | 2 - vignettes/a-modeling-example.html.asis | 2 - 22 files changed, 182 insertions(+), 109 deletions(-)
Title: (Permuted) Brunner-Munzel Test
Description: Provides the functions for Brunner-Munzel test and
permuted Brunner-Munzel test,
which enable to use formula, matrix, and table as argument.
These functions are based on Brunner and Munzel (2000)
<doi:10.1002/(SICI)1521-4036(200001)42:1%3C17::AID-BIMJ17%3E3.0.CO;2-U>
and Neubert and Brunner (2007) <doi:10.1016/j.csda.2006.05.024>,
and are written with FORTRAN.
Author: Toshiaki Ara [aut, cre]
Maintainer: Toshiaki Ara <toshiaki.ara@gmail.com>
Diff between brunnermunzel versions 1.3.4 dated 2019-05-21 and 1.3.5 dated 2019-05-30
brunnermunzel-1.3.4/brunnermunzel/src/Makevars |only brunnermunzel-1.3.5/brunnermunzel/DESCRIPTION | 8 ++++---- brunnermunzel-1.3.5/brunnermunzel/MD5 | 9 ++++----- brunnermunzel-1.3.5/brunnermunzel/NEWS.md | 4 ++++ brunnermunzel-1.3.5/brunnermunzel/inst/doc/usage.html | 6 +++--- brunnermunzel-1.3.5/brunnermunzel/src/bm_test.f | 2 +- 6 files changed, 16 insertions(+), 13 deletions(-)
Title: Interface to the 'Zoltar' Forecast Repository API
Description: 'Zoltar' <https://www.zoltardata.com/> is a website that provides a repository of model forecast results
in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time
series forecasts for prediction challenges of interest to the modeling community. This package provides functions
for working with the 'Zoltar' API, including connecting and authenticating, getting information about projects,
models, and forecasts, deleting and uploading forecast data, and downloading scores.
Author: Matthew Cornell [aut, cre],
Nicholas Reich [aut, cph]
Maintainer: Matthew Cornell <cornell@umass.edu>
Diff between zoltr versions 0.2.0 dated 2019-05-22 and 0.2.2 dated 2019-05-30
DESCRIPTION | 8 +- MD5 | 30 ++++---- NAMESPACE | 4 + NEWS.md | 16 ++++ R/connection.R | 76 ++++++++++++++-------- R/zoltr.R |only README.md | 11 +-- inst/doc/getting-started.R | 3 inst/doc/getting-started.Rmd | 9 +- inst/doc/getting-started.html | 36 +++++++--- inst/doc/project-owners.Rmd | 18 +++-- inst/doc/project-owners.html | 44 +++++++----- man/new_connection.Rd | 2 man/zoltr-package.Rd |only tests/testthat/test-connection.R | 133 +++++++++++++++++++++++++-------------- vignettes/getting-started.Rmd | 9 +- vignettes/project-owners.Rmd | 18 +++-- 17 files changed, 271 insertions(+), 146 deletions(-)
Title: Time Frame Coding Kernel
Description: A kernel of functions for programming
time series methods in a way that is relatively independently of the
representation of time. Also provides plotting, time windowing,
and some
other utility functions which are specifically intended for time series.
See the Guide distributed as a vignette, or ?tframe.Intro for more
details. (User utilities are in package tfplot.)
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between tframe versions 2015.12-1 dated 2015-12-16 and 2015.12-1.1 dated 2019-05-30
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- build/vignette.rds |binary inst/doc/Guide.R |only inst/doc/Guide.pdf |binary 5 files changed, 7 insertions(+), 6 deletions(-)
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. These tools
address common challenges associated with continuous time series data
for environmental decision making.
Author: Marcus W. Beck [aut, cre],
Kimberly Cressman [ctb]
Maintainer: Marcus W. Beck <marcusb@sccwrp.org>
Diff between SWMPr versions 2.3.0 dated 2018-02-08 and 2.3.1 dated 2019-05-30
DESCRIPTION | 10 +++--- MD5 | 69 ++++++++++++++++++++++++------------------------ NEWS.md | 8 +++++ R/swmpr_analyze.R | 24 ---------------- R/swmpr_misc.R | 4 +- R/swmpr_organize.R | 16 ----------- R/swmpr_retrieval.R | 15 +++++++++- inst/CITATION |only man/aggremetab.Rd | 4 -- man/aggreswmp.Rd | 6 ---- man/all_params.Rd | 4 -- man/all_params_dtrng.Rd | 4 -- man/cens_id.Rd | 9 ++---- man/comb.Rd | 11 ++----- man/decomp.Rd | 8 ----- man/decomp_cj.Rd | 17 ++++------- man/ecometab.Rd | 12 ++------ man/hist.swmpr.Rd | 4 -- man/import_local.Rd | 9 +++--- man/map_reserve.Rd | 4 -- man/na.approx.swmpr.Rd | 4 -- man/overplot.Rd | 19 ++++--------- man/plot.swmpr.Rd | 6 ---- man/plot_metab.Rd | 6 ---- man/plot_quants.Rd | 4 -- man/plot_summary.Rd | 10 ++---- man/plot_wind.Rd | 13 ++++----- man/qaqc.Rd | 6 ---- man/qaqcchk.Rd | 6 ---- man/rem_reps.Rd | 10 ++---- man/setstep.Rd | 12 ++------ man/single_param.Rd | 4 -- man/site_codes.Rd | 4 -- man/site_codes_ind.Rd | 4 -- man/smoother.Rd | 4 -- man/subset.swmpr.Rd | 8 ++--- 36 files changed, 125 insertions(+), 233 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT).
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.2-3 dated 2018-02-05 and 1.2-5 dated 2019-05-30
DESCRIPTION | 16 ++-- MD5 | 46 ++++++------ NEWS.md | 17 ++++ R/bertinplot.R | 156 ++++++++++++++++++++++-------------------- R/seriate_ARSA_Branch-Bound.R | 2 R/seriate_SPIN.R | 2 README.md | 4 - build/vignette.rds |binary data/Chameleon.rda |binary data/Irish.rda |binary data/Munsingen.rda |binary data/Psych24.rda |binary data/SupremeCourt.rda |binary data/Townships.rda |binary data/Wood.rda |binary data/Zoo.rda |binary inst/CITATION | 46 +++++------- inst/doc/seriation.pdf |binary man/bertinplot.Rd | 37 +++++---- man/uniscale.Rd | 3 src/arsa.f | 28 +++---- src/bburcg.f | 8 +- src/bbwrcg.f | 18 ++-- src/bea.f | 14 ++- 24 files changed, 207 insertions(+), 190 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 0.8.2 dated 2019-05-11 and 0.8.4 dated 2019-05-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 13 +++++++++++++ R/ggpairs.R | 4 ++-- R/kaplan.R | 8 +++++--- R/timeroc.R | 9 +++++++-- inst/doc/jsmodule.html | 4 ++-- 7 files changed, 39 insertions(+), 19 deletions(-)
Title: A Set of Tools for Calculating Spatial Synchrony Between
Tree-Ring Chronologies
Description: Provides functions for the calculation and plotting of synchrony in
tree growth from tree-ring width chronologies (TRW index). It combines
variance-covariance (VCOV) mixed modelling with functions that quantify
the degree to which the TRW chronologies contain a common temporal
signal. It also implements temporal trends in spatial synchrony using a
moving window. These methods can also be used with other kind of ecological
variables that have temporal autocorrelation corrected.
Author: Josu G. Alday (https://orcid.org/0000-0001-7510-8655),
Tatiana A. Shestakova,
Victor Resco de Dios (https://orcid.org/0000-0002-5721-1656),
Jordi Voltas (https://orcid.org/0000-0003-4051-1158)
Maintainer: Josu G. Alday <josucham@gmail.com>
Diff between DendroSync versions 0.1.2 dated 2018-07-16 and 0.1.3 dated 2019-05-30
DESCRIPTION | 17 +++++++++++------ MD5 | 18 +++++++++--------- NEWS.md | 9 +++++++++ R/bet.aSE.R | 2 +- R/bet.het.aSE.R | 2 +- R/csbet.het.aSE.R | 2 +- R/dendro.varcov.R | 4 ++-- R/gen.aSE.R | 2 +- README.md | 2 +- man/gen.aSE.Rd | 2 +- 10 files changed, 37 insertions(+), 23 deletions(-)
Title: Replication Timing Profiling using DNA Copy Number
Description: Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.
Author: Dzmitry G Batrakou
Maintainer: Dzmitry G Batrakou <d.batrakou@gmail.com>
Diff between Repliscope versions 1.0.0 dated 2019-02-06 and 1.0.1 dated 2019-05-30
DESCRIPTION | 8 MD5 | 18 - NEWS.md | 2 R/normaliseRatio.R | 20 - R/plotCoverage.R | 2 build/vignette.rds |binary inst/doc/Repliscope.html | 667 ++++++++++++++++------------------------------- inst/shinyApp/server.R | 102 +++---- inst/shinyApp/ui.R | 107 +++---- man/normaliseRatio.Rd | 23 - 10 files changed, 385 insertions(+), 564 deletions(-)
Title: Tools for Analysing UK Politics
Description: Provides various tools for analysing UK political data, including
election result datasets, hexagonal cartograms and functions to
retrieve council member data.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between parlitools versions 0.3.1 dated 2019-03-22 and 0.3.3 dated 2019-05-30
DESCRIPTION | 13 LICENSE | 4 MD5 | 102 NAMESPACE | 36 NEWS.md | 11 R/council_seats.R | 350 - R/data.R | 39 R/parlitools-package.R | 32 R/parlitools_tidy.R | 236 README.md | 286 - build/vignette.rds |binary data/bes_2017.rda |binary data/census_11.rda |binary data/datalist | 17 data/leave_votes_west.rda |binary data/ni_ge_2017.rda |only inst/doc/bes-2015.Rmd | 222 inst/doc/bes-2015.html | 1436 ++--- inst/doc/bes-2017.Rmd | 282 - inst/doc/bes-2017.html | 1746 +++--- inst/doc/census-11.Rmd | 418 - inst/doc/census-11.html | 2812 +++++----- inst/doc/introduction.R | 222 inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 8732 ++++++++++++++++---------------- inst/doc/mapping-local-authorities.R | 100 inst/doc/mapping-local-authorities.Rmd | 132 inst/doc/mapping-local-authorities.html | 8506 +++++++++++++++---------------- inst/doc/using-cartograms.R | 118 inst/doc/using-cartograms.Rmd | 166 inst/doc/using-cartograms.html | 8536 +++++++++++++++---------------- man/bes_2015.Rd | 84 man/bes_2017.Rd | 78 man/census_11.Rd | 68 man/council_seats.Rd | 80 man/current_mps.Rd | 62 man/la_codes.Rd | 52 man/leave_votes_west.Rd | 90 man/maps.Rd | 80 man/mps_on_date.Rd | 112 man/ni_ge_2017.Rd |only man/parlitools.Rd | 22 man/party_colour.Rd | 56 tests/testthat.R | 8 tests/testthat/test-council_seats.R | 20 tests/testthat/test_current_mps.R | 22 tests/testthat/test_mps_on_date.R | 56 vignettes/bes-2015.Rmd | 222 vignettes/bes-2017.Rmd | 282 - vignettes/census-11.Rmd | 418 - vignettes/introduction.Rmd | 2 vignettes/mapping-local-authorities.Rmd | 132 vignettes/using-cartograms.Rmd | 166 53 files changed, 18358 insertions(+), 18310 deletions(-)
Title: Create Tables for Reporting Clinical Trials
Description: Create Tables for Reporting Clinical Trials.
Calculates descriptive statistics and hypothesis tests,
arranges the results in a table ready for reporting with LaTeX, HTML or Word.
Author: Armin Ströbel [aut, cre] (<https://orcid.org/0000-0002-6873-5332>)
Maintainer: Armin Ströbel <arminstroebel@web.de>
Diff between atable versions 0.1.1 dated 2019-03-25 and 0.1.2 dated 2019-05-30
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/atable_usage.R | 2 +- inst/doc/atable_usage.pdf |binary 5 files changed, 11 insertions(+), 11 deletions(-)
Title: A Fully Featured Logging Framework
Description: A flexible, feature-rich yet light-weight logging
framework based on 'R6' classes. It supports hierarchical loggers,
custom log levels, arbitrary data fields in log events, logging to
plaintext, 'JSON', (rotating) files, memory buffers, and databases, as
well as email and push notifications. For a full list of features with
examples please refer to the package vignette.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgr versions 0.2.1 dated 2019-03-25 and 0.3.0 dated 2019-05-30
lgr-0.2.1/lgr/R/test.R |only lgr-0.2.1/lgr/inst/doc/lgr-simple.R |only lgr-0.2.1/lgr/inst/doc/lgr-simple.Rmd |only lgr-0.2.1/lgr/inst/doc/lgr-simple.html |only lgr-0.2.1/lgr/tests/testthat/test_print.R |only lgr-0.2.1/lgr/vignettes/lgr-simple.Rmd |only lgr-0.3.0/lgr/DESCRIPTION | 22 lgr-0.3.0/lgr/MD5 | 153 +- lgr-0.3.0/lgr/NAMESPACE | 7 lgr-0.3.0/lgr/NEWS.md | 45 lgr-0.3.0/lgr/R/Appender.R | 757 ++++++++-- lgr-0.3.0/lgr/R/Filter.R | 22 lgr-0.3.0/lgr/R/Layout.R | 252 ++- lgr-0.3.0/lgr/R/LogEvent.R | 44 lgr-0.3.0/lgr/R/Logger.R | 206 +- lgr-0.3.0/lgr/R/get_logger.R | 35 lgr-0.3.0/lgr/R/lgr-package.R | 245 ++- lgr-0.3.0/lgr/R/log_levels.R | 34 lgr-0.3.0/lgr/R/logger_config.R | 222 +- lgr-0.3.0/lgr/R/print_Logger.R | 4 lgr-0.3.0/lgr/R/simple_logging.R | 165 +- lgr-0.3.0/lgr/R/utils-formatting.R | 2 lgr-0.3.0/lgr/R/utils-logging.R | 17 lgr-0.3.0/lgr/R/utils-rd.R | 143 + lgr-0.3.0/lgr/R/utils-rotor.R |only lgr-0.3.0/lgr/R/utils-sfmisc.R | 228 +++ lgr-0.3.0/lgr/R/utils-test.R |only lgr-0.3.0/lgr/R/utils.R | 34 lgr-0.3.0/lgr/README.md | 257 ++- lgr-0.3.0/lgr/build/vignette.rds |binary lgr-0.3.0/lgr/inst/WORDLIST | 8 lgr-0.3.0/lgr/inst/benchmarks |only lgr-0.3.0/lgr/inst/doc/lgr.R | 128 + lgr-0.3.0/lgr/inst/doc/lgr.Rmd | 215 +- lgr-0.3.0/lgr/inst/doc/lgr.html | 1113 +++++++++------ lgr-0.3.0/lgr/man/Appender.Rd | 26 lgr-0.3.0/lgr/man/AppenderBuffer.Rd | 32 lgr-0.3.0/lgr/man/AppenderConsole.Rd | 24 lgr-0.3.0/lgr/man/AppenderDbi.Rd | 54 lgr-0.3.0/lgr/man/AppenderDt.Rd | 20 lgr-0.3.0/lgr/man/AppenderFile.Rd | 25 lgr-0.3.0/lgr/man/AppenderFileRotating.Rd |only lgr-0.3.0/lgr/man/AppenderGmail.Rd | 43 lgr-0.3.0/lgr/man/AppenderJson.Rd | 27 lgr-0.3.0/lgr/man/AppenderMemory.Rd | 22 lgr-0.3.0/lgr/man/AppenderPushbullet.Rd | 33 lgr-0.3.0/lgr/man/AppenderRjdbc.Rd | 50 lgr-0.3.0/lgr/man/AppenderSendmail.Rd | 49 lgr-0.3.0/lgr/man/AppenderTable.Rd | 1 lgr-0.3.0/lgr/man/EventFilter.Rd | 22 lgr-0.3.0/lgr/man/LayoutDbi.Rd | 18 lgr-0.3.0/lgr/man/LayoutFormat.Rd | 6 lgr-0.3.0/lgr/man/LayoutGlue.Rd | 11 lgr-0.3.0/lgr/man/LayoutJson.Rd | 2 lgr-0.3.0/lgr/man/LogEvent.Rd | 18 lgr-0.3.0/lgr/man/Logger.Rd | 147 + lgr-0.3.0/lgr/man/as.data.frame.LogEvent.Rd | 28 lgr-0.3.0/lgr/man/basic_config.Rd | 46 lgr-0.3.0/lgr/man/get_log_levels.Rd | 1 lgr-0.3.0/lgr/man/get_logger.Rd | 14 lgr-0.3.0/lgr/man/label_levels.Rd | 2 lgr-0.3.0/lgr/man/lgr-package.Rd | 24 lgr-0.3.0/lgr/man/logger_config.Rd | 30 lgr-0.3.0/lgr/man/print.Logger.Rd | 2 lgr-0.3.0/lgr/man/simple_logging.Rd | 18 lgr-0.3.0/lgr/man/system_infos.Rd | 1 lgr-0.3.0/lgr/man/with_log_level.Rd | 8 lgr-0.3.0/lgr/tests/testthat/test_Appender.R | 41 lgr-0.3.0/lgr/tests/testthat/test_AppenderDbi.R | 353 ++-- lgr-0.3.0/lgr/tests/testthat/test_AppenderFileRotating.R |only lgr-0.3.0/lgr/tests/testthat/test_Filter.R | 19 lgr-0.3.0/lgr/tests/testthat/test_Logger.R | 41 lgr-0.3.0/lgr/tests/testthat/test_get_logger.R | 24 lgr-0.3.0/lgr/tests/testthat/test_lgr-package.R |only lgr-0.3.0/lgr/tests/testthat/test_logger_config.R | 120 + lgr-0.3.0/lgr/tests/testthat/test_parallel.R | 8 lgr-0.3.0/lgr/tests/testthat/test_print_Logger.R | 17 lgr-0.3.0/lgr/tests/testthat/test_simple_logging.R | 43 lgr-0.3.0/lgr/tests/testthat/test_utils-logging.R | 9 lgr-0.3.0/lgr/tests/testthat/test_utils-rd.R |only lgr-0.3.0/lgr/tests/testthat/testdata/lg_full.json |only lgr-0.3.0/lgr/tests/testthat/testdata/lg_full.yaml | 15 lgr-0.3.0/lgr/tests/testthat/testdata/lg_simple.json |only lgr-0.3.0/lgr/tests/testthat/testdata/lg_simple.yaml | 8 lgr-0.3.0/lgr/vignettes/lgr.Rmd | 215 +- 85 files changed, 4123 insertions(+), 1952 deletions(-)
Title: Determine the Number of States in Hidden Markov Models via
Marginal Likelihood
Description: Provide functions to make estimate the number of states for a hidden Markov
model (HMM) using marginal likelihood method proposed by the authors.
See the Manual.pdf file a detail description of all functions, and a detail tutorial.
Author: Yang Chen, Cheng-Der Fuh, Chu-Lan Kao, and S. C. Kou.
Maintainer: Chu-Lan Michael Kao <chulankao@gmail.com>
Diff between HMMmlselect versions 0.1.0 dated 2019-03-08 and 0.1.1 dated 2019-05-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/HMMfitfuncs.h | 14 +++++++++----- 3 files changed, 14 insertions(+), 10 deletions(-)
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Algorithms for automatically finding appropriate thresholds for
numerical data, with special functions for thresholding images. Provides the
'ImageJ' 'Auto Threshold' plugin functionality to R users. See
<http://imagej.net/Auto_Threshold> and Landini et al. (2017)
<DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths]
(<https://orcid.org/0000-0002-8010-9481>),
Gabriel Landini [ctb, cph] (<https://orcid.org/0000-0002-9689-0989>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 1.3.1 dated 2019-05-21 and 1.3.2 dated 2019-05-30
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- NEWS.md | 6 ++++++ inst/doc/finding-thresholds.html | 4 ++-- inst/doc/thresholding-image-stacks.html | 6 +++--- inst/doc/thresholding-images.html | 6 +++--- 6 files changed, 26 insertions(+), 19 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-15 0.1-2
2016-09-05 0.1-1
2016-08-29 0.1-0
2016-06-15 0.0-9
2016-05-10 0.0-8
2015-10-08 0.0-7
2015-05-10 0.0-6
2015-01-19 0.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-29 0.2.4
2017-05-09 0.2.3
2017-03-22 0.2.1
2017-03-22 0.2.2
2017-03-17 0.2.0
2016-02-17 0.1.1
2016-02-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-29 3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-05 0.7.1
2019-01-11 0.7
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 2.2 dated 2018-05-17 and 2.3 dated 2019-05-30
geigen-2.2/geigen/src/zggesall.f |only geigen-2.2/geigen/src/zggevall.f |only geigen-2.2/geigen/src/zggevsdeps.f |only geigen-2.3/geigen/DESCRIPTION | 9 +++++---- geigen-2.3/geigen/MD5 | 11 ++++------- geigen-2.3/geigen/NEWS | 5 +++++ geigen-2.3/geigen/build/partial.rdb |binary geigen-2.3/geigen/inst/COPYRIGHTS | 6 +++--- 8 files changed, 17 insertions(+), 14 deletions(-)
Title: Representation of DET Curve with Confidence Intervals
Description: Builds both ROC (Receiver Operating Characteristic) and DET (Detection Error Tradeoff) curves from a set of predictors, which are the
results of a binary classification system. The curves give a general vision of the performance of the classifier,
and are useful for comparing performance of different systems.
Author: García-Ródenas, Álvaro [aut, cre],
Franco, Manuel [aut],
Vivo, Juana-María [aut],
Fernández-Breis, Jesualdo T. [aut],
Font, Roberto [aut]
Maintainer: "García-Ródenas, Álvaro" <alvaro.garcia9@um.es>
Diff between DET versions 1.0.1 dated 2019-05-23 and 2.0.0 dated 2019-05-30
DET-1.0.1/DET/man/det.CI.Rd |only DET-1.0.1/DET/man/det.Rd |only DET-2.0.0/DET/DESCRIPTION | 6 +-- DET-2.0.0/DET/MD5 | 14 ++++---- DET-2.0.0/DET/NAMESPACE | 5 +-- DET-2.0.0/DET/NEWS.md | 9 +++++ DET-2.0.0/DET/R/detcurve.R | 69 ++++++++++++++++++++++++------------------ DET-2.0.0/DET/R/print.R |only DET-2.0.0/DET/man/detc.CI.Rd |only DET-2.0.0/DET/man/detc.Rd |only DET-2.0.0/DET/man/printDET.Rd |only 11 files changed, 64 insertions(+), 39 deletions(-)
Title: A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Description: A collection of various oversampling techniques developed from SMOTE is provided. SMOTE is a oversampling technique which synthesizes a new minority instance between a pair of one minority instance and one of its K nearest neighbor. (see <https://www.jair.org/media/953/live-953-2037-jair.pdf> for more information) Other techniques adopt this concept with other criteria in order to generate balanced dataset for class imbalance problem.
Author: Wacharasak Siriseriwan [aut, cre]
Maintainer: Wacharasak Siriseriwan <wacharasak.s@gmail.com>
Diff between smotefamily versions 1.3 dated 2018-12-18 and 1.3.1 dated 2019-05-30
DESCRIPTION | 10 ++++----- MD5 | 23 ++++++++++---------- R/adas.r | 50 +++++++++++++++++++++------------------------ man/ANS.Rd | 8 +++---- man/BLSMOTE.Rd | 10 ++++----- man/DBSMOTE.Rd | 8 +++++-- man/RSLS.Rd | 11 ++++++--- man/SLS.Rd | 10 ++++----- man/SMOTE.Rd | 8 +++---- man/adas.Rd | 8 +++---- man/gap.Rd | 11 +++------ man/knearest.Rd | 9 +++----- man/smotefamily-package.Rd |only 13 files changed, 84 insertions(+), 82 deletions(-)
Title: 'fastText' Wrapper for Text Classification and Word
Representation
Description: Learning text representations and text classifiers may rely
on the same simple and efficient approach. 'fastText' is an open-source, free,
lightweight library that allows users to perform both tasks.
It transforms text into continuous vectors that can later
be used on many language related task.
It works on standard, generic hardware (no 'GPU' required).
It also includes model size reduction feature.
'fastText' original source code is available
at <https://github.com/facebookresearch/fastText>.
Author: Michaël Benesty [aut, cre, cph],
Facebook, Inc [cph]
Maintainer: Michaël Benesty <michael@benesty.fr>
Diff between fastrtext versions 0.3.2 dated 2019-04-13 and 0.3.3 dated 2019-05-30
DESCRIPTION | 8 +- MD5 | 20 +++--- NEWS.md | 4 + R/API.R | 6 - build/vignette.rds |binary inst/doc/list_commands.html | 4 - inst/doc/supervised_learning.html | 44 ++++++------- inst/doc/unsupervised_learning.html | 120 ++++++++++++++++++------------------ man/build_supervised.Rd | 9 +- man/build_vectors.Rd | 6 - src/fastrtext.cpp | 15 ++-- 11 files changed, 122 insertions(+), 114 deletions(-)