Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obsypy/obspy>. Additional classes and
methods support data returned by web services provided by the 'IRIS DMC'
<http://service.iris.edu/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISSeismic versions 1.4.9 dated 2018-09-19 and 1.5.0 dated 2019-06-05
DESCRIPTION | 6 - MD5 | 38 ++++---- NAMESPACE | 1 R/Class-IrisClient.R | 175 ++++++++++++++++++++++++++++++++++++++-- build/vignette.rds |binary inst/doc/IRISSeismic-intro.html | 37 +++++++- man/IRISSeismic-package.Rd | 10 ++ man/butterworth.Rd | 4 man/envelope.Rd | 4 man/getDataAvailability.Rd |only man/getDataselect.Rd | 5 - man/getEvalresp.Rd | 4 man/getEvent.Rd | 15 +-- man/getSNCL.Rd | 4 man/getTraveltime.Rd | 4 man/hilbert.Rd | 4 man/hilbertFFT.Rd | 4 src/Makevars | 2 src/libmseed/libmseed.map |only src/libmseed/temp.sh | 7 - src/parseMiniSEED.c | 6 - 21 files changed, 262 insertions(+), 68 deletions(-)
Title: Time Series with Matrix Profile
Description: A toolkit implementing the Matrix Profile concept that was created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.
Author: Francisco Bischoff [aut, cre] (<https://orcid.org/0000-0002-5301-8672>),
Michael Yeh [res, ccp, ctb] (<https://orcid.org/0000-0002-9807-2963>),
Diego Silva [res, ccp, ctb] (<https://orcid.org/0000-0002-5184-9413>),
Yan Zhu [res, ccp, ctb] (<https://orcid.org/0000-0002-5952-2108>),
Hoang Dau [res, ccp, ctb] (<https://orcid.org/0000-0003-2439-5185>),
Michele Linardi [res, ccp, ctb]
(<https://orcid.org/0000-0002-3249-2068>)
Maintainer: Francisco Bischoff <fbischoff@med.up.pt>
Diff between tsmp versions 0.3.4 dated 2019-02-24 and 0.3.5 dated 2019-06-05
tsmp-0.3.4/tsmp/man/mass.Rd |only tsmp-0.3.5/tsmp/DESCRIPTION | 19 tsmp-0.3.5/tsmp/MD5 | 150 tsmp-0.3.5/tsmp/NAMESPACE | 21 tsmp-0.3.5/tsmp/NEWS | 25 tsmp-0.3.5/tsmp/NEWS.md | 21 tsmp-0.3.5/tsmp/R/annotations.R | 654 +-- tsmp-0.3.5/tsmp/R/dist_profile.R |only tsmp-0.3.5/tsmp/R/find-chains.R | 149 tsmp-0.3.5/tsmp/R/find-discord.R | 267 - tsmp-0.3.5/tsmp/R/find-motifs.R | 143 tsmp-0.3.5/tsmp/R/fluss.R | 676 ++- tsmp-0.3.5/tsmp/R/mass-pre-w.R |only tsmp-0.3.5/tsmp/R/mass-pre.R | 135 tsmp-0.3.5/tsmp/R/mass.R | 105 tsmp-0.3.5/tsmp/R/mass_v2.R |only tsmp-0.3.5/tsmp/R/mass_v3.R |only tsmp-0.3.5/tsmp/R/mass_weighted.R |only tsmp-0.3.5/tsmp/R/misc.R | 2117 +++++----- tsmp-0.3.5/tsmp/R/mstomp-par.R | 680 +-- tsmp-0.3.5/tsmp/R/mstomp.R | 638 +-- tsmp-0.3.5/tsmp/R/plot.R | 448 +- tsmp-0.3.5/tsmp/R/print.R | 652 +-- tsmp-0.3.5/tsmp/R/salient.R | 940 ++-- tsmp-0.3.5/tsmp/R/scrimp.R | 649 +-- tsmp-0.3.5/tsmp/R/sdts-predict.R | 380 - tsmp-0.3.5/tsmp/R/sdts-train.R | 712 +-- tsmp-0.3.5/tsmp/R/simple.R | 635 +- tsmp-0.3.5/tsmp/R/stamp-par.R | 440 +- tsmp-0.3.5/tsmp/R/stamp.R | 447 +- tsmp-0.3.5/tsmp/R/stomp-par.R | 577 +- tsmp-0.3.5/tsmp/R/stomp.R | 469 +- tsmp-0.3.5/tsmp/R/stompi.R |only tsmp-0.3.5/tsmp/R/subset.R |only tsmp-0.3.5/tsmp/R/tsmp-deprecated.R |only tsmp-0.3.5/tsmp/R/tsmp.R | 478 +- tsmp-0.3.5/tsmp/R/valmod.R | 1430 +++--- tsmp-0.3.5/tsmp/README.md | 21 tsmp-0.3.5/tsmp/build/vignette.rds |binary tsmp-0.3.5/tsmp/inst/WORDLIST | 268 - tsmp-0.3.5/tsmp/inst/doc/press.html | 15 tsmp-0.3.5/tsmp/man/dist_profile.Rd |only tsmp-0.3.5/tsmp/man/find_motif.Rd | 2 tsmp-0.3.5/tsmp/man/floss.Rd |only tsmp-0.3.5/tsmp/man/floss_cac.Rd |only tsmp-0.3.5/tsmp/man/floss_extract.Rd |only tsmp-0.3.5/tsmp/man/fluss.Rd | 8 tsmp-0.3.5/tsmp/man/fluss_cac.Rd | 6 tsmp-0.3.5/tsmp/man/fluss_extract.Rd | 8 tsmp-0.3.5/tsmp/man/fluss_score.Rd | 6 tsmp-0.3.5/tsmp/man/mass-deprecated.Rd |only tsmp-0.3.5/tsmp/man/mass_pre.Rd | 23 tsmp-0.3.5/tsmp/man/mass_pre_w.Rd |only tsmp-0.3.5/tsmp/man/mass_v2.Rd |only tsmp-0.3.5/tsmp/man/mass_v3.Rd |only tsmp-0.3.5/tsmp/man/mass_weighted.Rd |only tsmp-0.3.5/tsmp/man/min_mp_idx.Rd |only tsmp-0.3.5/tsmp/man/mstomp.Rd | 6 tsmp-0.3.5/tsmp/man/plot.Rd | 11 tsmp-0.3.5/tsmp/man/plot_arcs.Rd | 6 tsmp-0.3.5/tsmp/man/remove_class.Rd |only tsmp-0.3.5/tsmp/man/stamp.Rd | 7 tsmp-0.3.5/tsmp/man/stomp.Rd | 4 tsmp-0.3.5/tsmp/man/stompi_update.Rd |only tsmp-0.3.5/tsmp/man/tsmp-deprecated.Rd |only tsmp-0.3.5/tsmp/man/tsmp.Rd | 6 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-arc-count.svg | 264 - tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-chain.svg | 72 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-discord.svg |only tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-fluss.svg | 110 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-matrix-profile.svg | 78 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-motif.svg | 6 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-multi-matrix-profile.svg | 198 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-multimotif.svg | 66 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-simple-matrix-profile.svg | 22 tsmp-0.3.5/tsmp/tests/figs/testing-plots/plot-valmod.svg |only tsmp-0.3.5/tsmp/tests/prints/discord-print |only tsmp-0.3.5/tsmp/tests/prints/mmotif-print | 30 tsmp-0.3.5/tsmp/tests/prints/motif_valmod-print |only tsmp-0.3.5/tsmp/tests/prints/valmod-print |only tsmp-0.3.5/tsmp/tests/spelling.R | 13 tsmp-0.3.5/tsmp/tests/testthat/test-basics.R | 127 tsmp-0.3.5/tsmp/tests/testthat/test-find-discord.R |only tsmp-0.3.5/tsmp/tests/testthat/test-fluss.R | 66 tsmp-0.3.5/tsmp/tests/testthat/test-mstomp-search.R | 70 tsmp-0.3.5/tsmp/tests/testthat/test-plot-print.R | 146 tsmp-0.3.5/tsmp/tests/testthat/test-salient.R | 77 tsmp-0.3.5/tsmp/tests/testthat/test-stamps.R | 357 - tsmp-0.3.5/tsmp/tests/testthat/test-stomp-search.R | 66 tsmp-0.3.5/tsmp/tests/testthat/test-subset.R |only tsmp-0.3.5/tsmp/tests/testthat/test-valmod.R |only 91 files changed, 8589 insertions(+), 7633 deletions(-)
Title: An Implementation of the 'DoubleClick for Publishers' API
Description: Functions to interact with the 'Google DoubleClick for Publishers (DFP)' API
<https://developers.google.com/ad-manager/api/start> (recently renamed to
'Google Ad Manager'). This package is automatically compiled from the API WSDL
(Web Service Description Language) files to dictate how the API is structured.
Theoretically, all API actions are possible using this package; however, care
must be taken to format the inputs correctly and parse the outputs correctly.
Please see the 'Google Ad Manager' API reference <https://developers.google.com/ad-manager/api/rel_notes>
and this package's website <https://stevenmmortimer.github.io/rdfp/> for more
information, documentation, and examples.
Author: Steven M. Mortimer [aut, cre],
Jennifer Bryan [ctb],
Joanna Zhao [ctb]
Maintainer: Steven M. Mortimer <reportmort@gmail.com>
Diff between rdfp versions 0.1.3 dated 2019-01-07 and 0.1.4 dated 2019-06-05
rdfp-0.1.3/rdfp/R/ContentMetadataKeyHierarchyService.R |only rdfp-0.1.3/rdfp/man/dfp_createContentMetadataKeyHierarchies.Rd |only rdfp-0.1.3/rdfp/man/dfp_getContentMetadataKeyHierarchiesByStatement.Rd |only rdfp-0.1.3/rdfp/man/dfp_performContentMetadataKeyHierarchyAction.Rd |only rdfp-0.1.3/rdfp/man/dfp_updateContentMetadataKeyHierarchies.Rd |only rdfp-0.1.3/rdfp/tests/testthat/test-ContentMetadataKeyHierarchyService.R |only rdfp-0.1.4/rdfp/DESCRIPTION | 56 rdfp-0.1.4/rdfp/MD5 | 565 ++++---- rdfp-0.1.4/rdfp/NAMESPACE | 12 rdfp-0.1.4/rdfp/NEWS.md | 25 rdfp-0.1.4/rdfp/R/ActivityGroupService.R | 9 rdfp-0.1.4/rdfp/R/ActivityService.R | 9 rdfp-0.1.4/rdfp/R/AdExclusionRuleService.R | 12 rdfp-0.1.4/rdfp/R/AdRuleService.R | 39 rdfp-0.1.4/rdfp/R/AdjustmentService.R |only rdfp-0.1.4/rdfp/R/AudienceSegmentService.R | 12 rdfp-0.1.4/rdfp/R/BaseRateService.R | 16 rdfp-0.1.4/rdfp/R/CdnConfigurationService.R | 12 rdfp-0.1.4/rdfp/R/CmsMetadataService.R |only rdfp-0.1.4/rdfp/R/CompanyService.R | 9 rdfp-0.1.4/rdfp/R/ContactService.R | 9 rdfp-0.1.4/rdfp/R/ContentBundleService.R | 12 rdfp-0.1.4/rdfp/R/ContentService.R | 6 rdfp-0.1.4/rdfp/R/CreativeService.R | 9 rdfp-0.1.4/rdfp/R/CreativeSetService.R | 9 rdfp-0.1.4/rdfp/R/CreativeTemplateService.R | 3 rdfp-0.1.4/rdfp/R/CreativeWrapperService.R | 12 rdfp-0.1.4/rdfp/R/CustomFieldService.R | 21 rdfp-0.1.4/rdfp/R/CustomTargetingService.R | 24 rdfp-0.1.4/rdfp/R/DaiAuthenticationKeyService.R | 12 rdfp-0.1.4/rdfp/R/ExchangeRateService.R | 12 rdfp-0.1.4/rdfp/R/ForecastService.R | 12 rdfp-0.1.4/rdfp/R/InventoryService.R | 15 rdfp-0.1.4/rdfp/R/LabelService.R | 12 rdfp-0.1.4/rdfp/R/LineItemCreativeAssociationService.R | 18 rdfp-0.1.4/rdfp/R/LineItemService.R | 35 rdfp-0.1.4/rdfp/R/LineItemTemplateService.R | 3 rdfp-0.1.4/rdfp/R/LiveStreamEventService.R | 15 rdfp-0.1.4/rdfp/R/MobileApplicationService.R | 12 rdfp-0.1.4/rdfp/R/NativeStyleService.R | 12 rdfp-0.1.4/rdfp/R/NetworkService.R | 12 rdfp-0.1.4/rdfp/R/OrderService.R | 12 rdfp-0.1.4/rdfp/R/PackageService.R | 16 rdfp-0.1.4/rdfp/R/PlacementService.R | 13 rdfp-0.1.4/rdfp/R/PremiumRateService.R | 13 rdfp-0.1.4/rdfp/R/ProductPackageItemService.R | 16 rdfp-0.1.4/rdfp/R/ProductPackageService.R | 16 rdfp-0.1.4/rdfp/R/ProductService.R | 13 rdfp-0.1.4/rdfp/R/ProductTemplateService.R | 16 rdfp-0.1.4/rdfp/R/ProposalLineItemService.R | 16 rdfp-0.1.4/rdfp/R/ProposalService.R | 15 rdfp-0.1.4/rdfp/R/PublisherQueryLanguageService.R | 6 rdfp-0.1.4/rdfp/R/RateCardService.R | 16 rdfp-0.1.4/rdfp/R/ReconciliationLineItemReportService.R | 6 rdfp-0.1.4/rdfp/R/ReconciliationOrderReportService.R | 9 rdfp-0.1.4/rdfp/R/ReconciliationReportRowService.R | 6 rdfp-0.1.4/rdfp/R/ReconciliationReportService.R | 6 rdfp-0.1.4/rdfp/R/ReportService.R | 29 rdfp-0.1.4/rdfp/R/SuggestedAdUnitService.R | 6 rdfp-0.1.4/rdfp/R/TargetingPresetService.R |only rdfp-0.1.4/rdfp/R/TeamService.R | 12 rdfp-0.1.4/rdfp/R/UserService.R | 18 rdfp-0.1.4/rdfp/R/UserTeamAssociationService.R | 12 rdfp-0.1.4/rdfp/R/WorkflowRequestService.R | 10 rdfp-0.1.4/rdfp/R/dfp_options_settings.R | 2 rdfp-0.1.4/rdfp/R/dfp_service_endpoints.R | 48 rdfp-0.1.4/rdfp/R/dfp_utils.R | 10 rdfp-0.1.4/rdfp/R/dfp_utils_xml.R | 22 rdfp-0.1.4/rdfp/README.md | 208 ++- rdfp-0.1.4/rdfp/inst/doc/ad-trafficking-setup.Rmd | 8 rdfp-0.1.4/rdfp/inst/doc/ad-trafficking-setup.html | 384 ++++- rdfp-0.1.4/rdfp/inst/doc/administrative-tasks.html | 414 ++++-- rdfp-0.1.4/rdfp/inst/doc/checking-availability.R | 14 rdfp-0.1.4/rdfp/inst/doc/checking-availability.Rmd | 22 rdfp-0.1.4/rdfp/inst/doc/checking-availability.html | 646 ++++++---- rdfp-0.1.4/rdfp/inst/doc/manipulating-orders-and-lineitems.Rmd | 2 rdfp-0.1.4/rdfp/inst/doc/manipulating-orders-and-lineitems.html | 346 ++++- rdfp-0.1.4/rdfp/inst/doc/pulling-reports.R | 22 rdfp-0.1.4/rdfp/inst/doc/pulling-reports.Rmd | 24 rdfp-0.1.4/rdfp/inst/doc/pulling-reports.html | 512 +++++-- rdfp-0.1.4/rdfp/man/dfp_createActivities.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createActivityGroups.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createAdExclusionRules.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createAdRules.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createAdUnits.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createAudienceSegments.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createBaseRates.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createCdnConfigurations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCompanies.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createContacts.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createContentBundles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCreativeSet.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCreativeWrappers.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCreatives.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCustomFieldOptions.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCustomFields.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCustomTargetingKeys.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createCustomTargetingValues.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createDaiAuthenticationKeys.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createExchangeRates.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createLabels.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createLineItemCreativeAssociations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createLineItems.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createLiveStreamEvents.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createMobileApplications.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createNativeStyles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createOrders.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createPackages.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createPlacements.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createPremiumRates.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createProductPackageItems.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createProductPackages.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createProductTemplates.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createProposalLineItems.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createProposals.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createRateCards.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_createTeams.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createUserTeamAssociations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_createUsers.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getActivitiesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getActivityGroupsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAdExclusionRulesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAdRulesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAdSpotsByStatement.Rd |only rdfp-0.1.4/rdfp/man/dfp_getAdUnitSizesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAdUnitsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAllNetworks.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAllRoles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAudienceSegmentsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAvailabilityForecast.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getAvailabilityForecastById.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getBaseRatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCdnConfigurationsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCmsMetadataKeysByStatement.Rd |only rdfp-0.1.4/rdfp/man/dfp_getCmsMetadataValuesByStatement.Rd |only rdfp-0.1.4/rdfp/man/dfp_getCompaniesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getContactsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getContentBundlesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getContentByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getContentByStatementAndCustomTargetingValue.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCreativeSetsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCreativeTemplatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCreativeWrappersByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCreativesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCurrentNetwork.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCurrentUser.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCustomFieldOption.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCustomFieldsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCustomTargetingKeysByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getCustomTargetingValuesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getDaiAuthenticationKeysByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getDeliveryForecast.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getDeliveryForecastByIds.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getExchangeRatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getLabelsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getLineItemCreativeAssociationsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getLineItemTemplatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getLineItemsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getLiveStreamEventsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getMarketplaceCommentsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getMobileApplicationsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getNativeStylesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getOrdersByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getPackagesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getPlacementsByStatement.Rd | 3 rdfp-0.1.4/rdfp/man/dfp_getPremiumRatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getPreviewUrl.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getPreviewUrlsForNativeStyles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getProductPackageItemsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getProductPackagesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getProductTemplatesByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getProductsByStatement.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_getProposalLineItemsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getProposalsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getRateCardsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getReconciliationLineItemReportsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getReconciliationOrderReportsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getReconciliationReportRowsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getReconciliationReportsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getReportDownloadURL.Rd | 4 rdfp-0.1.4/rdfp/man/dfp_getReportDownloadUrlWithOptions.Rd | 4 rdfp-0.1.4/rdfp/man/dfp_getReportJobStatus.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_getSavedQueriesByStatement.Rd | 8 rdfp-0.1.4/rdfp/man/dfp_getSuggestedAdUnitsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getTargetingPresetsByStatement.Rd |only rdfp-0.1.4/rdfp/man/dfp_getTeamsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getTrafficAdjustmentsByStatement.Rd |only rdfp-0.1.4/rdfp/man/dfp_getUserTeamAssociationsByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getUsersByStatement.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_getWorkflowRequestsByStatement.Rd | 6 rdfp-0.1.4/rdfp/man/dfp_hasCustomPacingCurve.Rd |only rdfp-0.1.4/rdfp/man/dfp_makeTestNetwork.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performAdExclusionRuleAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performAdRuleAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performAdUnitAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performAudienceSegmentAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performBaseRateAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performCdnConfigurationAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performContentBundleAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performCreativeWrapperAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performCustomFieldAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performCustomTargetingKeyAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performCustomTargetingValueAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performDaiAuthenticationKeyAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performExchangeRateAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performLabelAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performLineItemAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performLineItemCreativeAssociationAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performLiveStreamEventAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performMobileApplicationAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performNativeStyleAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performOrderAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performPackageAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performPlacementAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProductAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProductPackageAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProductPackageItemAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProductTemplateAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProposalAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performProposalLineItemAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performRateCardAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performReconciliationOrderReportAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performSuggestedAdUnitAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performTeamAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performUserAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performUserTeamAssociationAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_performWorkflowRequestAction.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_registerSessionsForMonitoring.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_runReportJob.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_select.Rd | 3 rdfp-0.1.4/rdfp/man/dfp_updateActivities.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateActivityGroups.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateAdExclusionRules.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateAdRules.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateAdUnits.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateAudienceSegments.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateBaseRates.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCdnConfigurations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCompanies.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateContacts.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateContentBundles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCreativeSet.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCreativeWrappers.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCreatives.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCustomFieldOptions.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCustomFields.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCustomTargetingKeys.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateCustomTargetingValues.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateDaiAuthenticationKeys.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateExchangeRates.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateLabels.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateLineItemCreativeAssociations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateLineItems.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateLiveStreamEvents.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateMobileApplications.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateNativeStyles.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateNetwork.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateOrders.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updatePackages.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updatePlacements.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updatePremiumRates.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProductPackageItems.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProductPackages.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProductTemplates.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProducts.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProposalLineItems.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateProposals.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateRateCards.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateReconciliationLineItemReports.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateReconciliationOrderReports.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateReconciliationReportRows.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateReconciliationReports.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateTeams.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateTrafficAdjustments.Rd |only rdfp-0.1.4/rdfp/man/dfp_updateUserTeamAssociations.Rd | 2 rdfp-0.1.4/rdfp/man/dfp_updateUsers.Rd | 2 rdfp-0.1.4/rdfp/tests/testthat/test-ActivityGroupService.R | 18 rdfp-0.1.4/rdfp/tests/testthat/test-AdjustmentService.R |only rdfp-0.1.4/rdfp/tests/testthat/test-CmsMetadataService.R |only rdfp-0.1.4/rdfp/tests/testthat/test-CustomFieldService.R | 23 rdfp-0.1.4/rdfp/tests/testthat/test-CustomTargetingService.R | 46 rdfp-0.1.4/rdfp/tests/testthat/test-ExchangeRateService.R | 6 rdfp-0.1.4/rdfp/tests/testthat/test-ForecastService.R | 28 rdfp-0.1.4/rdfp/tests/testthat/test-LabelService.R | 23 rdfp-0.1.4/rdfp/tests/testthat/test-LineItemService.R | 2 rdfp-0.1.4/rdfp/tests/testthat/test-OrderService.R | 20 rdfp-0.1.4/rdfp/tests/testthat/test-ReportService.R | 31 rdfp-0.1.4/rdfp/tests/testthat/test-TargetingPresetService.R |only rdfp-0.1.4/rdfp/tests/testthat/test-UserTeamAssociationService.R | 16 rdfp-0.1.4/rdfp/vignettes/ad-trafficking-setup.Rmd | 8 rdfp-0.1.4/rdfp/vignettes/checking-availability.Rmd | 22 rdfp-0.1.4/rdfp/vignettes/manipulating-orders-and-lineitems.Rmd | 2 rdfp-0.1.4/rdfp/vignettes/pulling-reports.Rmd | 24 293 files changed, 3039 insertions(+), 1681 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
See Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.3-13 dated 2019-05-19 and 0.3-15 dated 2019-06-05
DESCRIPTION | 8 +-- MD5 | 62 ++++++++++++++-------------- NEWS | 7 +++ R/cv.glmreg.R | 2 R/glmreg.R | 3 + R/nclreg.R | 1 R/zipath.R | 4 - inst/doc/brcancer.R | 2 inst/doc/brcancer.Rnw | 6 -- inst/doc/brcancer.pdf |binary inst/doc/german.pdf |binary inst/doc/kkt.pdf |binary inst/doc/static_brcancer.pdf |binary inst/doc/static_german.pdf |binary man/cv.glmreg.Rd | 6 +- man/zipath_fit.Rd | 2 src/activeset.f | 14 +++--- src/dnbinom.f | 2 src/glmreg_fit_fortran.f | 5 -- src/glmregnb_fortran.f | 2 src/lmnetGaussian.f | 62 +++++++++++++++------------- src/midloopGLM.f | 10 +--- src/mpath_init.c | 16 +++---- src/nclreg_ad.f | 23 ++++++---- src/nclreg_fortran.f | 11 +++-- src/nclreg_onelambda.f | 6 +- src/outloop.f | 93 ++++++++++++++++++++++++------------------- src/zi_onelambda.f | 17 +------ src/ziloss.f | 2 src/zipath_active.f | 48 ++++++++++++---------- src/zipath_nonactive.f | 9 +--- vignettes/brcancer.Rnw | 6 -- 32 files changed, 222 insertions(+), 207 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using priority-queue
shortest paths (Padgham (2019) <doi:10.32866/6945>). Weighted directed
graphs have weights from A to B which may differ from those from B to A.
Dual-weighted directed graphs have two sets of such weights. A canonical
example is a street network to be used for routing in which routes are
calculated by weighting distances according to the type of way and mode of
transport, yet lengths of routes must be calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Shane Saunders [cph] (Original author of included code for priority
heaps)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.1.4 dated 2019-05-11 and 0.2.0 dated 2019-06-05
DESCRIPTION | 10 - MD5 | 162 +++++++++++----------- NAMESPACE | 9 - NEWS.md | 18 ++ R/compare-heaps.R | 4 R/dists.R | 33 +++- R/dodgr-package.r | 10 - R/dodgr-streetnet.R | 25 +-- R/flows.R | 86 ++++++----- R/fund-cycles.R | 30 ++-- R/graph-contraction.R | 181 ++++++++++++++++++++---- R/graph-conversion.R | 22 ++- R/graph-functions-misc.R | 47 +++++- R/graph-functions.R | 93 ++++++++++-- R/paths.R | 10 - R/utils.R |only R/weight-streetnet-times.R | 106 ++++++++++---- R/weight-streetnet.R | 241 +++++++++++++++++++-------------- R/weighting_profiles.R | 31 ++-- README.md | 95 ++++++------- build/vignette.rds |binary data/hampi.rda |binary inst/doc/benchmark.html | 81 +++++------ inst/doc/dodgr.R | 42 +++-- inst/doc/dodgr.Rmd | 32 +++- inst/doc/dodgr.html | 204 +++++++++++++-------------- inst/doc/times.R | 14 - inst/doc/times.Rmd | 54 +++---- inst/doc/times.html | 61 +++----- man/clear_dodgr_cache.Rd |only man/compare_heaps.Rd | 2 man/dodgr_cache_off.Rd |only man/dodgr_contract_graph.Rd | 6 man/dodgr_distances.Rd | 2 man/dodgr_dists.Rd | 2 man/dodgr_flows_aggregate.Rd | 4 man/dodgr_full_cycles.Rd | 2 man/dodgr_fundamental_cycles.Rd | 2 man/dodgr_streetnet.Rd | 8 - man/dodgr_streetnet_sc.Rd | 8 - man/dodgr_times.Rd | 2 man/dodgr_uncontract_graph.Rd | 10 - man/os_roads_bristol.Rd | 5 man/weight_streetnet.Rd | 30 ++-- src/RcppExports.cpp | 4 src/dgraph.cpp | 2 src/dgraph.h | 2 src/dodgr-to-sf.cpp | 2 src/fund-cycles.h | 6 src/graph-contract.cpp | 2 src/graph-sample.cpp | 14 - src/graph.cpp | 2 src/heaps/bheap.cpp | 2 src/heaps/bheap.h | 41 +++++ src/heaps/fheap.cpp | 2 src/heaps/fheap.h | 2 src/heaps/heap.h | 15 +- src/heaps/heap23.cpp | 2 src/heaps/heap23.h | 2 src/heaps/heap23_2.h | 2 src/heaps/heap_lib.h | 2 src/heaps/triheap.cpp | 2 src/heaps/triheap.h | 2 src/heaps/triheap_ext.cpp | 2 src/heaps/triheap_ext.h | 2 src/run_sp.cpp | 49 +----- src/run_sp.h | 7 src/sc-as-network.cpp | 2 src/sc-as-network.h | 2 src/sf-as-network.cpp | 6 src/turn_penalty.cpp | 20 +- src/turn_penalty.h | 7 tests/sc-conversion-fns.R |only tests/testthat/test-cycles.R | 19 +- tests/testthat/test-dists.R | 178 +++++++++++++++++++++++- tests/testthat/test-flows.R | 66 +++++++-- tests/testthat/test-graph-conversion.R | 7 tests/testthat/test-graph-fns.R | 137 ++++++++++++++++-- tests/testthat/test-paths.R | 7 tests/testthat/test-sc.R | 191 ++++++++++++++++---------- tests/testthat/test-streetnet.R | 142 ++++++++++++++++++- tests/testthat/test-wt-profiles.R | 13 + vignettes/dodgr.Rmd | 32 +++- vignettes/times.Rmd | 54 +++---- 84 files changed, 1892 insertions(+), 943 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to
work with remote database tables as if they are in-memory data frames.
Basic features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 1.4.0 dated 2019-04-23 and 1.4.1 dated 2019-06-05
DESCRIPTION | 9 ++- MD5 | 84 +++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 37 +++++++++++---- R/backend-hive.R | 2 R/backend-mssql.R | 23 +++++++-- R/build-sql.R | 4 - R/data-lahman.R | 4 - R/data-nycflights13.R | 2 R/escape.R | 13 +++++ R/partial-eval.R | 21 +++++++- R/query-select.R | 11 +++- R/sql-expr.R | 2 R/utils.R | 2 R/verb-arrange.R | 2 inst/doc/dbplyr.Rmd | 10 +--- inst/doc/dbplyr.html | 20 +++----- inst/doc/new-backend.html | 2 inst/doc/reprex.html | 4 - inst/doc/sql.Rmd | 4 - inst/doc/sql.html | 4 - inst/doc/translation-function.Rmd | 4 - inst/doc/translation-function.html | 8 +-- inst/doc/translation-verb.Rmd | 2 inst/doc/translation-verb.html | 2 man/arrange.tbl_lazy.Rd | 2 man/build_sql.Rd | 4 - man/dbplyr-package.Rd | 1 man/lahman.Rd | 4 - man/named_commas.Rd | 4 - man/nycflights13.Rd | 2 man/partial_eval.Rd | 2 tests/testthat/test-backend-mssql.R | 9 +++ tests/testthat/test-translate-sql.R | 5 ++ tests/testthat/test-verb-group_by.R | 4 - tests/testthat/test-verb-mutate.R | 25 ++++++++++ tests/testthat/test-verb-select.R | 2 tests/testthat/test-verb-summarise.R | 6 +- vignettes/dbplyr.Rmd | 10 +--- vignettes/notes/_postgres-setup.Rmd | 4 - vignettes/sql.Rmd | 4 - vignettes/translation-function.Rmd | 4 - vignettes/translation-verb.Rmd | 2 43 files changed, 231 insertions(+), 140 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from
National Water Information System (NWIS) <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>.
Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Laura DeCicco [aut, cre] (<https://orcid.org/0000-0002-3915-9487>),
Robert Hirsch [aut] (<https://orcid.org/0000-0002-4534-075X>),
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Carr [ctb],
David Watkins [aut] (<https://orcid.org/0000-0002-7544-0700>)
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.7.4 dated 2019-03-25 and 2.7.5 dated 2019-06-05
dataRetrieval-2.7.4/dataRetrieval/man/whatWQPmetrics.Rd |only dataRetrieval-2.7.4/dataRetrieval/man/whatWQPsamples.Rd |only dataRetrieval-2.7.4/dataRetrieval/man/whatWQPsites.Rd |only dataRetrieval-2.7.5/dataRetrieval/DESCRIPTION | 10 dataRetrieval-2.7.5/dataRetrieval/MD5 | 135 ++++------ dataRetrieval-2.7.5/dataRetrieval/NAMESPACE | 13 dataRetrieval-2.7.5/dataRetrieval/NEWS | 7 dataRetrieval-2.7.5/dataRetrieval/R/AAA.R | 3 dataRetrieval-2.7.5/dataRetrieval/R/addWaterYear.R | 17 - dataRetrieval-2.7.5/dataRetrieval/R/constructNWISURL.r | 42 ++- dataRetrieval-2.7.5/dataRetrieval/R/getWebServiceData.R | 22 + dataRetrieval-2.7.5/dataRetrieval/R/importNGWMN_wml2.R | 33 +- dataRetrieval-2.7.5/dataRetrieval/R/importRDB1.r | 28 +- dataRetrieval-2.7.5/dataRetrieval/R/importWQP.R | 120 +++++--- dataRetrieval-2.7.5/dataRetrieval/R/importWaterML1.r | 103 ++++++- dataRetrieval-2.7.5/dataRetrieval/R/readNGWMNdata.R | 47 +-- dataRetrieval-2.7.5/dataRetrieval/R/readNWISdata.r | 4 dataRetrieval-2.7.5/dataRetrieval/R/readNWISdv.r | 2 dataRetrieval-2.7.5/dataRetrieval/R/readNWISqw.r | 51 ++- dataRetrieval-2.7.5/dataRetrieval/R/readNWISsite.r | 4 dataRetrieval-2.7.5/dataRetrieval/R/readNWISunit.r | 79 +++-- dataRetrieval-2.7.5/dataRetrieval/R/readWQPdata.R | 13 dataRetrieval-2.7.5/dataRetrieval/R/readWQPdots.R | 2 dataRetrieval-2.7.5/dataRetrieval/R/readWQPqw.r | 6 dataRetrieval-2.7.5/dataRetrieval/R/renameColumns.R | 16 - dataRetrieval-2.7.5/dataRetrieval/R/setAccess.R | 10 dataRetrieval-2.7.5/dataRetrieval/R/tabbedDataRetrievals.R | 1 dataRetrieval-2.7.5/dataRetrieval/R/whatNWISData.r | 2 dataRetrieval-2.7.5/dataRetrieval/R/whatNWISsites.R | 6 dataRetrieval-2.7.5/dataRetrieval/R/whatWQPdata.R | 107 ++++--- dataRetrieval-2.7.5/dataRetrieval/R/whatWQPsites.R | 66 ++++ dataRetrieval-2.7.5/dataRetrieval/inst/CITATION | 2 dataRetrieval-2.7.5/dataRetrieval/inst/doc/dataRetrieval.R | 8 dataRetrieval-2.7.5/dataRetrieval/inst/doc/dataRetrieval.Rmd | 8 dataRetrieval-2.7.5/dataRetrieval/inst/doc/dataRetrieval.html | 7 dataRetrieval-2.7.5/dataRetrieval/man/addWaterYear.Rd | 10 dataRetrieval-2.7.5/dataRetrieval/man/constructWQPURL.Rd | 15 - dataRetrieval-2.7.5/dataRetrieval/man/dataRetrieval.Rd | 3 dataRetrieval-2.7.5/dataRetrieval/man/figures |only dataRetrieval-2.7.5/dataRetrieval/man/getWebServiceData.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/importNGWMN.Rd | 8 dataRetrieval-2.7.5/dataRetrieval/man/importRDB1.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/importWQP.Rd | 13 dataRetrieval-2.7.5/dataRetrieval/man/importWaterML1.Rd | 8 dataRetrieval-2.7.5/dataRetrieval/man/importWaterML2.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNGWMNdata.Rd | 20 - dataRetrieval-2.7.5/dataRetrieval/man/readNGWMNlevels.Rd | 12 dataRetrieval-2.7.5/dataRetrieval/man/readNGWMNsites.Rd | 8 dataRetrieval-2.7.5/dataRetrieval/man/readNWISdata.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISdv.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISgwl.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISmeas.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISpeak.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISqw.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISrating.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISsite.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISstat.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISuse.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readNWISuv.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readWQPdata.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/readWQPqw.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/renameNWISColumns.Rd | 16 - dataRetrieval-2.7.5/dataRetrieval/man/setAccess.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/whatNWISdata.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/whatNWISsites.Rd | 2 dataRetrieval-2.7.5/dataRetrieval/man/whatWQPdata.Rd | 36 ++ dataRetrieval-2.7.5/dataRetrieval/man/wqpSpecials.Rd |only dataRetrieval-2.7.5/dataRetrieval/tests/testthat/tests_general.R | 99 ++++--- dataRetrieval-2.7.5/dataRetrieval/tests/testthat/tests_imports.R | 10 dataRetrieval-2.7.5/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 58 ++-- dataRetrieval-2.7.5/dataRetrieval/vignettes/dataRetrieval.Rmd | 8 71 files changed, 820 insertions(+), 516 deletions(-)
Title: Import XY-Data into R
Description: Provides access to the 'xylib' C library for to import xy
data from powder diffraction, spectroscopy and other experimental methods.
Author: Sebastian Kreutzer [aut, trl, cre]
(<https://orcid.org/0000-0002-0734-2199>),
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
RLum Team [ctb],
Marcin Wojdyr [cph] (C++ library 'xylib'),
Peng Zhang [cph] (C++ library 'xylib')
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between rxylib versions 0.2.3 dated 2019-04-11 and 0.2.4 dated 2019-06-05
DESCRIPTION | 8 +-- MD5 | 79 +++++++++++++++++++------------------- NEWS.md | 67 +++++++++++++++++++++----------- R/RcppExports.R | 10 ++-- R/read_xyData.R | 5 -- R/rxylib.R | 22 +++++++--- README.md | 12 +++-- inst/include/xylib/bruker_spc.h | 1 inst/include/xylib/spectra.h | 1 inst/include/xylib/util.h | 1 inst/include/xylib/xylib.h | 4 - man/convert_xy2TKA.Rd | 5 ++ man/figures |only man/read_xyData.Rd | 8 ++- man/rxylib-package.Rd | 27 ++++++++----- src/Makevars | 19 +++++++-- src/read_data.cpp | 1 src/xylib/bruker_raw.cpp | 2 src/xylib/bruker_spc.cpp | 82 ++++++++++++++++++++-------------------- src/xylib/canberra_cnf.cpp | 2 src/xylib/canberra_mca.cpp | 2 src/xylib/chiplot.cpp | 2 src/xylib/cpi.cpp | 2 src/xylib/csv.cpp | 2 src/xylib/dbws.cpp | 2 src/xylib/pdcif.cpp | 2 src/xylib/philips_raw.cpp | 2 src/xylib/philips_udf.cpp | 2 src/xylib/riet7.cpp | 2 src/xylib/rigaku_dat.cpp | 2 src/xylib/specsxy.cpp | 2 src/xylib/spectra.cpp | 2 src/xylib/text.cpp | 2 src/xylib/util.cpp | 33 +++++++++------- src/xylib/uxd.cpp | 2 src/xylib/vamas.cpp | 2 src/xylib/winspec_spe.cpp | 2 src/xylib/xfit_xdd.cpp | 2 src/xylib/xrdml.cpp | 2 src/xylib/xsyg.cpp | 22 +++++----- src/xylib/xylib.cpp | 6 +- 41 files changed, 264 insertions(+), 189 deletions(-)
Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators. It allows for robust parameter estimation and prediction using Gaussian stochastic process emulator. It also implements the parallel partial Gaussian stochastic process emulator for computer model with massive outputs See the reference: Mengyang Gu and Jim Berger, 2016, Annals of Applied Statistics; Mengyang Gu, Xiaojing Wang and Jim Berger, 2018, Annals of Statistics.
Author: Mengyang Gu [aut, cre],
Jesus Palomo [aut],
James Berger [aut]
Maintainer: Mengyang Gu <mgu6@jhu.edu>
Diff between RobustGaSP versions 0.5.6 dated 2018-09-11 and 0.5.7 dated 2019-06-05
CHANGELOG | 8 DESCRIPTION | 14 MD5 | 83 +- NAMESPACE | 15 R/RcppExports.R | 24 R/functions.R | 91 ++ R/ppgasp.R |only R/predict.R | 100 ++ R/rgasp.R | 237 ++---- R/simulate.R | 14 R/structure.R | 95 ++ build/partial.rdb |binary data |only inst/extdata/example.r | 2 man/RobustGaSP-package.Rd | 14 man/as.S3prediction.Rd | 6 man/construct_ppgasp.Rd |only man/environ.4.data.Rd |only man/findInertInputs.Rd | 2 man/humanity_model.Rd |only man/log_approx_ref_prior.Rd | 5 man/log_approx_ref_prior_deriv.Rd | 2 man/log_marginal_lik.Rd | 18 man/log_marginal_lik_deriv.Rd | 6 man/log_marginal_lik_deriv_ppgasp.Rd |only man/log_marginal_lik_ppgasp.Rd |only man/log_ref_marginal_post.Rd | 18 man/log_ref_marginal_post_ppgasp.Rd |only man/neg_log_marginal_post_approx_ref.Rd | 24 man/neg_log_marginal_post_approx_ref_deriv.Rd | 7 man/neg_log_marginal_post_approx_ref_deriv_ppgasp.Rd |only man/neg_log_marginal_post_approx_ref_ppgasp.Rd |only man/neg_log_marginal_post_ref.Rd | 20 man/neg_log_marginal_post_ref_ppgasp.Rd |only man/plot.rgasp.Rd | 2 man/ppgasp-class.Rd |only man/ppgasp.Rd |only man/predict.ppgasp.Rd |only man/predict.rgasp.Rd | 19 man/predppgasp-class.Rd |only man/predrgasp-class.Rd | 4 man/rgasp-class.Rd | 6 man/rgasp.Rd | 50 - man/separable_kernel.Rd | 2 man/separable_multi_kernel.Rd |only man/show.ppgasp.Rd |only man/show.rgasp.Rd | 2 man/simulate.rgasp.Rd | 2 src/RcppExports.cpp | 140 +++ src/functions.cpp | 708 +++++++++++++++---- src/init.c | 42 - 51 files changed, 1346 insertions(+), 436 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, univariate and multivariate, with optional kernel term and
sampling techniques.
Author: Alencar Xavier, William Muir, Kyle Kocak, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 1.6.4 dated 2019-05-20 and 1.6.5 dated 2019-06-05
bWGR-1.6.4/bWGR/R/mkr.R |only bWGR-1.6.4/bWGR/src/wgr20190410.cpp |only bWGR-1.6.5/bWGR/DESCRIPTION | 12 - bWGR-1.6.5/bWGR/MD5 | 24 +-- bWGR-1.6.5/bWGR/R/RcppExports.R | 274 ++++++++++++++++++------------------ bWGR-1.6.5/bWGR/R/mix.R | 6 bWGR-1.6.5/bWGR/R/wgr.R | 95 ++++++++++++ bWGR-1.6.5/bWGR/man/bWGR.Rd | 6 bWGR-1.6.5/bWGR/man/em.Rd | 13 - bWGR-1.6.5/bWGR/man/mix.Rd | 12 - bWGR-1.6.5/bWGR/man/mvr.Rd | 173 +++++++++------------- bWGR-1.6.5/bWGR/man/wgr.Rd | 18 +- bWGR-1.6.5/bWGR/man/xtra.Rd |only bWGR-1.6.5/bWGR/src/RcppExports.cpp | 50 ++++-- bWGR-1.6.5/bWGR/src/wgr20190605.cpp |only 15 files changed, 383 insertions(+), 300 deletions(-)
Title: Queries and Extracts Images from Extensible Neuroimaging Archive
Toolkit Public/Private Datasets
Description: Allows communication with Extensible Neuroimaging Archive Toolkit <https://www.xnat.org>.
'Rxnat' is using the 'XNAT' REST API to perform data queries and download images.
Author: Adi Gherman [aut, cre]
Maintainer: Adi Gherman <adig@jhu.edu>
Diff between Rxnat versions 1.0.4 dated 2019-03-29 and 1.0.5 dated 2019-06-05
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------- NAMESPACE | 1 R/xnat_api.R | 47 +++++++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/rxnat.html | 4 +-- man/download_xnat_file.Rd | 8 ++++--- man/get_scan_resources.Rd | 4 ++- 8 files changed, 47 insertions(+), 37 deletions(-)
Title: Provenance Collector
Description: Defines functions that can be used to collect provenance as
an R script executes or during a console session. The output is a text
file in PROV-JSON format.
Author: Barbara Lerner [aut, cre],
Emery Boose [aut],
Elizabeth Fong [aut],
Luis Perez [aut],
Thomas Pasquier [ctb],
Matthew Lau [ctb],
Yada Pruksachatkun [ctb],
Alex Liu [ctb],
Moe Pwint Phyu [ctb],
Connor Gregorich-Trevor [ctb],
Aaron Ellison [res],
Margo Seltzer [res],
Joe Wonsil [res],
Orenna Brand [res]
Maintainer: Barbara Lerner <blerner@mtholyoke.edu>
Diff between rdtLite versions 1.0.2 dated 2018-11-30 and 1.1.0 dated 2019-06-05
DESCRIPTION | 16 +-- MD5 | 82 ++++++++-------- NAMESPACE | 2 NEWS.md | 19 +++ R/API_core.R | 55 ++++++---- R/API_rdtLite.R | 79 +++++++++++++-- R/DDGStatement.R | 4 R/DataNodes.R | 4 R/Edges.R | 10 + R/Functions.R | 5 R/FunctionsDefined.R | 10 + R/IOTrace.R | 36 ++++--- R/OutputJSON.R | 51 ++++----- R/ProcNodes.R | 43 ++++++-- R/RDataTracker_core.R | 50 ++++++++- R/Utilities.R | 49 +++++++++ README.md | 2 man/prov.json.Rd | 35 ++++++ man/prov.run.Rd | 9 + tests/testthat/testDDGStatement.R | 2 tests/testthat/testFunctionsDefined.R | 14 +- tests/testthat/testOutputJson/cases/agent.json | 1 tests/testthat/testOutputJson/cases/proc_3.csv | 2 tests/testthat/testOutputJson/expected/data2proc_1.json | 1 tests/testthat/testOutputJson/expected/data2proc_3.json | 1 tests/testthat/testOutputJson/expected/data_1.json | 1 tests/testthat/testOutputJson/expected/data_3.json | 1 tests/testthat/testOutputJson/expected/func2proc_1.json | 1 tests/testthat/testOutputJson/expected/func2proc_3.json | 1 tests/testthat/testOutputJson/expected/func_1.json | 1 tests/testthat/testOutputJson/expected/func_3.json | 1 tests/testthat/testOutputJson/expected/lib2func_1.json | 1 tests/testthat/testOutputJson/expected/lib2func_3.json | 1 tests/testthat/testOutputJson/expected/lib_gen.json | 1 tests/testthat/testOutputJson/expected/lib_min1.json | 1 tests/testthat/testOutputJson/expected/lib_min2.json | 1 tests/testthat/testOutputJson/expected/proc2data_1.json | 1 tests/testthat/testOutputJson/expected/proc2data_3.json | 1 tests/testthat/testOutputJson/expected/proc2proc_1.json | 1 tests/testthat/testOutputJson/expected/proc2proc_3.json | 1 tests/testthat/testOutputJson/expected/proc_1.json | 3 tests/testthat/testOutputJson/expected/proc_3.json | 7 - 42 files changed, 423 insertions(+), 184 deletions(-)
Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests
across all levels of multiple grouping variables.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 0.0.6 dated 2019-03-20 and 0.0.7 dated 2019-06-05
DESCRIPTION | 21 - MD5 | 48 +-- NAMESPACE | 15 NEWS.md | 9 R/global_vars.R | 2 R/grouped_aov.R | 26 - R/grouped_glmer.R | 34 -- R/grouped_lmer.R | 28 - R/grouped_robustslr.R | 41 ++ R/grouped_slr.R | 29 - R/grouped_summary.R | 111 ++----- R/grouped_ttest.R | 24 - R/grouped_wilcox.R | 11 R/lm_effsize_ci.R | 127 ++++++-- R/signif_column.R | 15 README.md | 468 ++++++++++++++++-------------- inst/CITATION |only man/figures/README-grouped_summary3-1.png |binary man/grouped_aov.Rd | 1 man/grouped_robustslr.Rd | 10 man/lm_effsize_ci.Rd | 8 man/lm_effsize_standardizer.Rd |only tests/README.md | 79 ++--- tests/testthat/test_lm_effsize_ci.R | 18 - tests/testthat/test_signif_column.R | 72 ++-- tests/testthat/test_specify_decimal_p.R | 49 +-- 26 files changed, 660 insertions(+), 586 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.10.11.1 dated 2019-05-13 and 8.10.13 dated 2019-06-05
dialrjars-8.10.11.1/dialrjars/inst/java/carrier-1.107.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/geocoder-2.117.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/libphonenumber-8.10.11.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/prefixmapper-2.117.jar |only dialrjars-8.10.13/dialrjars/DESCRIPTION | 6 +-- dialrjars-8.10.13/dialrjars/MD5 | 12 +++--- dialrjars-8.10.13/dialrjars/NEWS.md | 20 ++++++++++ dialrjars-8.10.13/dialrjars/inst/java/carrier-1.109.jar |only dialrjars-8.10.13/dialrjars/inst/java/geocoder-2.119.jar |only dialrjars-8.10.13/dialrjars/inst/java/libphonenumber-8.10.13.jar |only dialrjars-8.10.13/dialrjars/inst/java/prefixmapper-2.119.jar |only 11 files changed, 29 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-13 0.1.7
2017-02-23 0.1.6
2016-09-15 0.1.4
2016-07-28 0.1.3
2016-05-10 0.1.2
2015-10-27 0.1.0
2015-10-27 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-15 0.8.7
2019-02-22 0.8.6
2018-09-29 0.8.5
2018-06-29 0.8.4.1
2018-04-22 0.8.4
2018-01-21 0.8.3
2017-12-17 0.8.2.1
2017-11-30 0.8.2
2017-11-27 0.8.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-04 0.2.8
2017-07-03 0.2.7
2017-03-14 0.2.6
2016-10-12 0.2.5
2016-08-30 0.2.4
2016-04-06 0.2.3
2016-01-04 0.2.2
2015-09-30 0.2.1
2015-05-26 0.2
2015-05-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-04 0.19
Title: Formatting and Harmonizing Ecological Trait-Data
Description: Assistance for handling ecological trait data and applying the
Ecological Trait-Data Standard terminology (Schneider et al. 2018
<doi:10.1101/328302>). There are two major use cases: (1) preparation of
own trait datasets for upload into public data bases, and (2) harmonizing
trait datasets from different sources by re-formatting them into a unified
format. See 'traitdataform' website for full documentation.
Author: Florian D. Schneider [aut, cre]
(<https://orcid.org/0000-0002-1494-5684>),
Caterina Penone [ctb] (<https://orcid.org/0000-0002-8170-6659>),
Andreas Ostrowski [ctb] (<https://orcid.org/0000-0002-2033-779X>),
Dennis Heimann [ctb],
Felix Neff [ctb],
Markus J. Ankenbrand [ctb]
Maintainer: Florian D. Schneider <florian.dirk.schneider@gmail.com>
Diff between traitdataform versions 0.5.4 dated 2019-05-06 and 0.5.5 dated 2019-06-05
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/data.R | 2 +- README.md | 6 +++--- inst/doc/traitdataform.R | 4 ++-- inst/doc/traitdataform.Rmd | 8 +++----- inst/doc/traitdataform.html | 7 +++---- man/mammaldiet.Rd | 2 +- vignettes/traitdataform.Rmd | 8 +++----- 11 files changed, 35 insertions(+), 36 deletions(-)
Title: An Implementation of Isolation Forest
Description: Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Author: Komala Sheshachala Srikanth [aut, cre]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between solitude versions 0.1.0 dated 2018-11-14 and 0.1.3 dated 2019-06-05
solitude-0.1.0/solitude/man/isolation_forest.Rd |only solitude-0.1.3/solitude/DESCRIPTION | 9 +- solitude-0.1.3/solitude/MD5 | 23 ++++-- solitude-0.1.3/solitude/NAMESPACE | 1 solitude-0.1.3/solitude/NEWS.md |only solitude-0.1.3/solitude/R/fastDoCall.R |only solitude-0.1.3/solitude/R/isolation_forest.R | 73 +++++++++++++++++---- solitude-0.1.3/solitude/R/package_solitude.R |only solitude-0.1.3/solitude/R/predict.R | 42 ++++++++---- solitude-0.1.3/solitude/README.md | 80 +++++++++++++++++++++++- solitude-0.1.3/solitude/man/anomaly_score.Rd | 5 + solitude-0.1.3/solitude/man/depth_corrected.Rd | 4 - solitude-0.1.3/solitude/man/fastDoCall.Rd |only solitude-0.1.3/solitude/man/isolationForest.Rd |only solitude-0.1.3/solitude/man/predict.solitude.Rd | 7 +- solitude-0.1.3/solitude/man/solitude.Rd |only 16 files changed, 197 insertions(+), 47 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@business.uzh.ch>
Diff between REndo versions 2.2.0 dated 2019-04-13 and 2.2.1 dated 2019-06-05
DESCRIPTION | 8 MD5 | 44 +-- NAMESPACE | 1 NEWS.md | 20 + R/f_checkinput_multilevel.R | 17 + R/f_copulacorrection_LL.R | 12 - R/f_copulacorrection_interface.R | 22 - R/f_copulacorrection_optimizeLL.R | 15 + R/f_multilevelIV.R | 31 ++ R/f_s3_rendoboots.R | 9 README.md | 30 +- build/vignette.rds |binary inst/doc/REndo-introduction.pdf |binary man/copulaCorrection.Rd | 22 - man/multilevelIV.Rd | 23 +- tests/testthat/helper_test_optimxargs.R | 2 tests/testthat/helper_test_s3methods_rendoboots.R | 23 ++ tests/testthat/test_correctness_copulacorrections.R | 225 ++++++++++---------- tests/testthat/test_correctness_multilevel.R | 187 +++++++++------- tests/testthat/test_inputchecks_multilevel.R | 15 + tests/testthat/test_runability_copulacorrection.R | 27 ++ tests/testthat/test_runability_multilevel.R | 48 +++- vignettes/REndo-introduction.Rmd | 38 +-- 23 files changed, 527 insertions(+), 292 deletions(-)
Title: Colour Schemes for Archaeological Data Visualization
Description: Colour schemes for archaeological data
visualization. This package provides Paul Tol's colour schemes and
several thematic palettes (geologic timescale, land cover, FAO soils,
etc.) with scales for 'ggplot2'.
Author: Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>),
Brice Lebrun [ctb] (<https://orcid.org/0000-0001-7503-8685>)
Maintainer: Nicolas Frerebeau
<nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between khroma versions 1.1.2 dated 2019-06-02 and 1.1.3 dated 2019-06-05
khroma-1.1.2/khroma/R/khroma.R |only khroma-1.1.3/khroma/DESCRIPTION | 14 khroma-1.1.3/khroma/MD5 | 50 - khroma-1.1.3/khroma/NAMESPACE | 9 khroma-1.1.3/khroma/R/colour.R | 61 +- khroma-1.1.3/khroma/R/ggplot2-science.R | 2 khroma-1.1.3/khroma/R/ggplot2-tol.R | 114 +++- khroma-1.1.3/khroma/R/ggplot2.R | 9 khroma-1.1.3/khroma/R/khroma-package.R |only khroma-1.1.3/khroma/R/sysdata.rda |binary khroma-1.1.3/khroma/README.md | 12 khroma-1.1.3/khroma/inst/examples/ex-palettes.R | 22 khroma-1.1.3/khroma/inst/examples/ex-tol-discrete.R | 11 khroma-1.1.3/khroma/man/colour.Rd | 82 ++- khroma-1.1.3/khroma/man/figures/README-tol-diverging-1.png |binary khroma-1.1.3/khroma/man/figures/README-tol-qualitative-1.png |binary khroma-1.1.3/khroma/man/figures/README-tol-sequential-1.png |binary khroma-1.1.3/khroma/man/figures/logo.png |only khroma-1.1.3/khroma/man/figures/logo.svg | 290 +++++------ khroma-1.1.3/khroma/man/khroma-package.Rd | 14 khroma-1.1.3/khroma/man/scale.Rd |only khroma-1.1.3/khroma/man/scale_land.Rd | 2 khroma-1.1.3/khroma/man/scale_tol_discrete.Rd | 57 +- khroma-1.1.3/khroma/man/scale_tol_diverging.Rd | 19 khroma-1.1.3/khroma/man/scale_tol_sequential.Rd | 55 +- khroma-1.1.3/khroma/tests/testthat/test-colour.R | 49 + khroma-1.1.3/khroma/tests/testthat/test-ggplot2-science.R | 74 +- khroma-1.1.3/khroma/tests/testthat/test-ggplot2-tol.R | 148 +++++ 28 files changed, 765 insertions(+), 329 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 0.8.4 dated 2019-05-30 and 0.8.5 dated 2019-06-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/jsBasicGadget.R | 15 ++++++--------- R/jsRepeatedGadget.R | 14 ++++++-------- R/jsSurveyGadget.R | 17 ++++++----------- inst/doc/jsmodule.html | 4 ++-- 7 files changed, 35 insertions(+), 41 deletions(-)
Title: Analysis of Coarsely Observed Data
Description: Functions to analyze coarse data.
Specifically, it contains functions to (1) fit parametric accelerated
failure time models to interval-censored survival time data, and (2)
estimate the case-fatality ratio in scenarios with under-reporting.
This package's development was motivated by applications to infectious
disease: in particular, problems with estimating the incubation period and
the case fatality ratio of a given disease. Sample data files are included
in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>,
Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and
Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.
Author: Nicholas G. Reich [aut, cre],
Justin Lessler [aut],
Andrew Azman [aut],
Zhian N. Kamvar [ctb]
Maintainer: Nicholas G. Reich <nick@schoolph.umass.edu>
Diff between coarseDataTools versions 0.6-3 dated 2016-03-11 and 0.6-4 dated 2019-06-05
ChangeLog | 4 DESCRIPTION | 28 ++++-- MD5 | 58 +++++++------- NAMESPACE | 53 +++++++++--- R/CFR_estimation.R | 6 - R/S4stuff.R | 7 - R/coarseDataTools-package.R | 15 ++- R/dic.fit.R | 160 +++++++++++++++++++++++++++++++++++--- R/dic.fit.mcmc.R | 47 ++++++++--- README.md | 9 +- build/vignette.rds |binary inst/CITATION | 12 ++ inst/doc/CFR_vignette.pdf |binary man/EMforCFR.Rd | 161 +++++++++++++++++---------------------- man/cd.fit.Rd | 55 ++++--------- man/cd.fit.mcmc.Rd | 47 ++++------- man/dgammaOff1.Rd |only man/dic.fit.Rd | 127 +++++++++++++----------------- man/dic.fit.mcmc.Rd | 85 +++++++------------- man/exp.win.lengths.Rd | 19 +--- man/fluA.inc.per.Rd | 19 +--- man/get.obs.type.Rd | 13 +-- man/logLik-methods.Rd | 19 ++-- man/loglikhd.Rd | 39 ++++----- man/mcmc.erlang.Rd | 34 +++----- man/mcmcpack.ll.Rd | 21 ++--- man/nycH1N1.Rd | 18 +--- man/pgammaOff1.Rd |only man/plot-methods.Rd | 35 ++++---- man/precision.simulation.Rd | 91 +++++++++------------- man/simulated.outbreak.deaths.Rd | 18 +--- 31 files changed, 654 insertions(+), 546 deletions(-)
More information about coarseDataTools at CRAN
Permanent link
Title: Plot Functions for Use in Bibliometrics
Description: Currently, the package provides four functions for plotting and analyzing bibliometric data (JIF, Journal Impact Factor, and paper percentile values), beamplots with citations, and two plot function to visualize the result of a reference publication year spectroscopy (RPYS) analysis performed in the free software 'CRExplorer' (see <http://crexplorer.net>). Further extension to more plot variants is planned.
Author: Robin Haunschild [aut, cre]
Maintainer: Robin Haunschild <R.Haunschild@fkf.mpg.de>
Diff between BibPlots versions 0.0.5 dated 2019-05-23 and 0.0.6 dated 2019-06-05
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NAMESPACE | 1 + R/beamplot.R | 2 +- R/beamplot_scopus.R |only R/ncr_comp.R | 42 +++++++++++++++++++++--------------------- man/beamplot.Rd | 2 +- man/beamplot_scopus.Rd |only 8 files changed, 34 insertions(+), 31 deletions(-)
Title: Soil Hydraulic Properties
Description: Provides functions for (1) soil water retention (SWC) and unsaturated hydraulic conductivity (Ku) (van Genuchten-Mualem (vGM or vG) [1, 2], Peters-Durner-Iden (PDI) [3, 4, 5], Brooks and Corey (bc) [8]), (2) fitting of parameter for SWC and/or Ku using Shuffled Complex Evolution (SCE) optimisation and (3) calculation of soil hydraulic properties (Ku and soil water contents) based on the simplified evaporation method (SEM) [6, 7].
Main references:
[1] van Genuchten (1980) <doi:10.2136/sssaj1980.03615995004400050002x>,
[2] Mualem (1976) <doi:10.1029/WR012i003p00513>,
[3] Peters (2013) <doi:10.1002/wrcr.20548>,
[4] Iden and Durner (2013) <doi:10.1002/2014WR015937>,
[5] Peters (2014) <doi:10.1002/2014WR015937>,
[6] Wind G. P. (1966),
[7] Peters and Durner (2008) <doi:10.1016/j.jhydrol.2008.04.016> and
[8] Brooks and Corey (1964).
Author: Ullrich Dettmann [aut, cre],
Felix Andrews [ctb] (For the code copied from the hydromad::SCEoptim
function (Version: 0.9-15) which is not on r-cran
(https://github.com/floybix/hydromad). The SCEoptim function is
adapted, and substantially revised from Brecht Donckels MATLAB code
which is in turn adopted from Qingyun Duans MATLAB code),
Brecht Donckels [ctb] (For the Matlab code which was adapted and
reviesed in the hydromad::SCEoptim function.),
Qingyun Duan [ctb] (For the MATLAB code adapted from Brecht Donkels.)
Maintainer: Ullrich Dettmann <ullrich.dettmann@thuenen.de>
Diff between SoilHyP versions 0.1.2 dated 2018-12-03 and 0.1.3 dated 2019-06-05
DESCRIPTION | 15 ++--- MD5 | 33 +++++++---- R/Ku.R | 49 +++++++++++++---- R/RMSE.R | 11 +++ R/SCEoptim.R | 8 -- R/SWC.R | 37 ++++++++++--- R/Sat.R | 27 ++++++++- R/Sat_old.R |only R/dataTestthat.R |only R/fitSHP.R | 134 +++++++++++++++++++++++++++++++++++------------- data/dataTestthat.RData |only man/Ku.Rd | 36 +++++++++--- man/RMSE.Rd | 4 + man/SCEoptim.Rd | 8 -- man/SWC.Rd | 20 +++++-- man/Sat.Rd | 17 +++++- man/Sat_old.Rd |only man/dataTestthat.Rd |only man/fitSHP.Rd | 8 +- tests |only 20 files changed, 293 insertions(+), 114 deletions(-)
Title: Determine the Number of States in Hidden Markov Models via
Marginal Likelihood
Description: Provide functions to make estimate the number of states for a hidden Markov
model (HMM) using marginal likelihood method proposed by the authors.
See the Manual.pdf file a detail description of all functions, and a detail tutorial.
Author: Yang Chen, Cheng-Der Fuh, Chu-Lan Kao, and S. C. Kou.
Maintainer: Chu-Lan Michael Kao <chulankao@gmail.com>
Diff between HMMmlselect versions 0.1.3 dated 2019-06-04 and 0.1.4 dated 2019-06-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/HMMorderselectionfacility.R | 1 - src/HMMfit.cpp | 8 ++++---- 4 files changed, 10 insertions(+), 11 deletions(-)
Title: Histogram-Valued Data Analysis
Description: In the framework of Symbolic Data Analysis, a relatively new
approach to the statistical analysis of multi-valued data, we consider
histogram-valued data, i.e., data described by univariate histograms. The
methods and the basic statistics for histogram-valued data are mainly based
on the L2 Wasserstein metric between distributions, i.e., the Euclidean metric
between quantile functions. The package contains unsupervised classification
techniques, least square regression and tools for histogram-valued data and for
histogram time series. An introducing paper is Irpino A. Verde R. (2015) <doi:10.1007/s11634-014-0176-4>.
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino <antonio.irpino@unicampania.it>
Diff between HistDAWass versions 1.0.1 dated 2018-03-20 and 1.0.3 dated 2019-06-05
DESCRIPTION | 11 - MD5 | 140 +++++++------- R/All_classes.R | 18 + R/Kohonen_maps.R | 345 ++++++++++++++++++++++------------- R/Met_MatH.R | 36 +-- R/Met_distributionH.R | 51 +---- R/Plotting_with_ggplot.R | 46 +++- R/RcppExports.R | 12 + R/Utility.R | 15 + R/unsuperv_classification.R | 4 data/HData.RData |binary man/Center.cell.MatH-methods.Rd | 2 man/HTS-class.Rd | 2 man/MatH-class.Rd | 7 man/TMatH-class.Rd | 2 man/TdistributionH-class.Rd | 6 man/WH.SSQ-methods.Rd | 2 man/WH.SSQ2-methods.Rd | 2 man/WH.bind-methods.Rd | 2 man/WH.bind.col-methods.Rd | 2 man/WH.bind.row-methods.Rd | 2 man/WH.correlation-methods.Rd | 2 man/WH.correlation2-methods.Rd | 2 man/WH.mat.prod-methods.Rd | 2 man/WH.mat.sum-methods.Rd | 2 man/WH.plot_multiple_Spanish.funs.Rd | 4 man/WH.plot_multiple_indivs.Rd | 5 man/WH.regression.two.components.Rd | 3 man/WH.var.covar-methods.Rd | 2 man/WH.var.covar2-methods.Rd | 2 man/WH.vec.mean-methods.Rd | 2 man/WH.vec.sum-methods.Rd | 2 man/WH_2d_Adaptive_Kohonen_maps.Rd | 9 man/WH_2d_Kohonen_maps.Rd | 18 + man/WassSqDistH-methods.Rd | 2 man/checkEmptyBins-methods.Rd | 2 man/compP-methods.Rd | 2 man/compQ-methods.Rd | 2 man/crwtransform-methods.Rd | 2 man/distributionH-class.Rd | 3 man/dotpW-methods.Rd | 4 man/get.MatH.main.info-methods.Rd | 2 man/get.MatH.ncols-methods.Rd | 2 man/get.MatH.nrows-methods.Rd | 4 man/get.MatH.rownames-methods.Rd | 2 man/get.MatH.stats-methods.Rd | 2 man/get.MatH.varnames-methods.Rd | 2 man/get.cell.MatH-methods.Rd | 2 man/get.distr-methods.Rd | 2 man/get.histo-methods.Rd | 2 man/get.m-methods.Rd | 2 man/get.s-methods.Rd | 2 man/is.registeredMH-methods.Rd | 2 man/kurtH-methods.Rd | 2 man/meanH-methods.Rd | 2 man/minus.Rd | 2 man/plot-HTS.Rd | 4 man/plot-MatH.Rd | 4 man/plus-methods.Rd | 2 man/rQQ-methods.Rd | 2 man/register-methods.Rd | 2 man/registerMH-methods.Rd | 2 man/set.cell.MatH-methods.Rd | 5 man/skewH-methods.Rd | 2 man/stdH-methods.Rd | 2 man/subsetHTS-methods.Rd | 2 man/times-methods.Rd | 2 src/Makevars | 3 src/Makevars.win | 2 src/RcppExports.cpp | 41 ++++ src/Utility_fun.cpp | 151 ++++++++++++++- 71 files changed, 614 insertions(+), 423 deletions(-)
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between wiqid versions 0.2.1 dated 2019-01-02 and 0.2.2 dated 2019-06-05
wiqid-0.2.1/wiqid/R/Bwiqid_diag_plots.R |only wiqid-0.2.1/wiqid/R/Misc.R |only wiqid-0.2.1/wiqid/man/GrandSkinks.Rd |only wiqid-0.2.1/wiqid/man/KanhaTigers.Rd |only wiqid-0.2.1/wiqid/man/KillarneyBirds.Rd |only wiqid-0.2.1/wiqid/man/MeadowVoles.Rd |only wiqid-0.2.1/wiqid/man/Temburong.Rd |only wiqid-0.2.1/wiqid/man/dippers.Rd |only wiqid-0.2.1/wiqid/man/railSims.Rd |only wiqid-0.2.1/wiqid/man/salamanders.Rd |only wiqid-0.2.1/wiqid/man/seedbank.Rd |only wiqid-0.2.1/wiqid/man/weta.Rd |only wiqid-0.2.2/wiqid/DESCRIPTION | 9 - wiqid-0.2.2/wiqid/MD5 | 82 +++++++------ wiqid-0.2.2/wiqid/NAMESPACE | 11 - wiqid-0.2.2/wiqid/NEWS | 19 +-- wiqid-0.2.2/wiqid/R/BsurvCJS.R | 2 wiqid-0.2.2/wiqid/R/as_Bwiqid.R | 86 +++++++------- wiqid-0.2.2/wiqid/R/plot_Bwiqid_diag_plots.R |only wiqid-0.2.2/wiqid/R/plot_crosscorrPlot.R |only wiqid-0.2.2/wiqid/R/plot_diagPlot.R |only wiqid-0.2.2/wiqid/R/simpleRhat.R | 23 +++ wiqid-0.2.2/wiqid/R/utils.R |only wiqid-0.2.2/wiqid/R/utils_matchStart.R |only wiqid-0.2.2/wiqid/data/GrandSkinks.rda |binary wiqid-0.2.2/wiqid/data/KanhaTigers.rda |binary wiqid-0.2.2/wiqid/data/KillarneyBirds.rda |binary wiqid-0.2.2/wiqid/data/MeadowVoles.rda |binary wiqid-0.2.2/wiqid/data/Temburong.rda |binary wiqid-0.2.2/wiqid/data/dippers.rda |binary wiqid-0.2.2/wiqid/data/railSims.rda |binary wiqid-0.2.2/wiqid/data/salamanders.rda |binary wiqid-0.2.2/wiqid/data/seedbank.rda |binary wiqid-0.2.2/wiqid/data/weta.rda |binary wiqid-0.2.2/wiqid/inst/tests/testthat/test-Bnormal.R | 4 wiqid-0.2.2/wiqid/inst/tests/testthat/test-BoccSS.R | 4 wiqid-0.2.2/wiqid/inst/tests/testthat/test-closedCap2.R | 32 +++-- wiqid-0.2.2/wiqid/inst/tests/testthat/test-occMS.R | 8 - wiqid-0.2.2/wiqid/inst/tests/testthat/test-occSS.R | 4 wiqid-0.2.2/wiqid/inst/tests/testthat/test-occSS0.R | 4 wiqid-0.2.2/wiqid/inst/tests/testthat/test-occSScovSite.R | 4 wiqid-0.2.2/wiqid/inst/tests/testthat/test-occSSrn.R | 12 - wiqid-0.2.2/wiqid/inst/tests/testthat/test-occSStime.R | 4 wiqid-0.2.2/wiqid/man/as_Bwiqid.Rd | 5 wiqid-0.2.2/wiqid/man/data_GrandSkinks.Rd |only wiqid-0.2.2/wiqid/man/data_KanhaTigers.Rd |only wiqid-0.2.2/wiqid/man/data_KillarneyBirds.Rd |only wiqid-0.2.2/wiqid/man/data_MeadowVoles.Rd |only wiqid-0.2.2/wiqid/man/data_Temburong.Rd |only wiqid-0.2.2/wiqid/man/data_dippers.Rd |only wiqid-0.2.2/wiqid/man/data_railSims.Rd |only wiqid-0.2.2/wiqid/man/data_salamanders.Rd |only wiqid-0.2.2/wiqid/man/data_seedbank.Rd |only wiqid-0.2.2/wiqid/man/data_weta.Rd |only wiqid-0.2.2/wiqid/man/plotDiagnostics.Rd | 55 +++++--- wiqid-0.2.2/wiqid/man/plot_crosscorrPlot.Rd |only 56 files changed, 208 insertions(+), 160 deletions(-)
More information about promotionImpact at CRAN
Permanent link
Title: Analyzing Multiple Omics Data with an Offset Approach
Description: Fits successive Lasso models for several blocks of (omics) data with different priorities and takes the predicted values as an offset for the next block.
Author: Simon Klau, Roman Hornung, Alina Bauer
Maintainer: Simon Klau <simonklau@ibe.med.uni-muenchen.de>
Diff between prioritylasso versions 0.2.1 dated 2017-09-25 and 0.2.2 dated 2019-06-05
DESCRIPTION | 10 MD5 | 38 - NAMESPACE | 18 R/cvm_prioritylasso.R | 226 ++++---- R/data.R | 70 +- R/prioritylasso.R | 881 ++++++++++++++++---------------- build/vignette.rds |binary data/datalist | 2 inst/doc/prioritylasso_vignette.R | 258 ++++----- inst/doc/prioritylasso_vignette.Rmd | 394 +++++++------- inst/doc/prioritylasso_vignette.html | 959 +++++++++++++++++++++-------------- man/cvm_prioritylasso.Rd | 174 +++--- man/pl_data.Rd | 80 +- man/predict.prioritylasso.Rd | 82 +- man/prioritylasso.Rd | 228 ++++---- tests/testthat.R | 10 tests/testthat/test-cvmpl.R | 149 ++--- tests/testthat/test-pl.R | 390 +++++++------- tests/testthat/test-predict.R | 212 +++---- vignettes/prioritylasso_vignette.Rmd | 394 +++++++------- 20 files changed, 2443 insertions(+), 2132 deletions(-)
Title: Lightweight but Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and manipulated.
Test files are R scripts interspersed with test commands, that can be programmed
over. Fully automated build-install-test sequence for packages. Skip tests when
not run locally (e.g. on CRAN). Flexible and configurable output printing. Compare
computed output with output stored with the package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 0.9.3 dated 2019-05-10 and 0.9.4 dated 2019-06-05
DESCRIPTION | 6 MD5 | 44 ++--- NAMESPACE | 1 NEWS | 16 + R/methods.R | 4 R/setup.R |only R/tinytest.R | 358 +++++++++++++++++++++++++++++-------------- README.md | 69 ++++---- build/vignette.rds |binary inst/doc/using_tinytest.R | 99 ++++++++--- inst/doc/using_tinytest.Rnw | 142 ++++++++++++----- inst/doc/using_tinytest.pdf |binary inst/tinytest/test_env_A.R |only inst/tinytest/test_env_B.R |only man/build_install_test.Rd | 6 man/expect_equal.Rd | 6 man/ignore.Rd | 2 man/run_test_dir.Rd | 29 +++ man/run_test_file.Rd | 20 +- man/setup_tinytest.Rd |only man/test_package.Rd | 20 ++ man/tinytest.Rd | 8 tests/tinytest.R | 2 vignettes/test_addOne.R | 2 vignettes/using_tinytest.Rnw | 142 ++++++++++++----- 25 files changed, 675 insertions(+), 301 deletions(-)
Title: Generalized Eigenvalues and QZ Decomposition
Description: Generalized eigenvalues and eigenvectors
use QZ decomposition (generalized Schur decomposition).
The decomposition needs an N-by-N non-symmetric
matrix A or paired matrices (A,B) with eigenvalues reordering
mechanism. The decomposition functions are mainly based Fortran
subroutines in complex*16 and double precision of LAPACK
library (version 3.4.2. or later).
Author: Wei-Chen Chen [aut, cre],
LAPACK authors [aut, cph]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between QZ versions 0.1-6 dated 2017-05-14 and 0.1-7 dated 2019-06-05
QZ-0.1-6/QZ/README |only QZ-0.1-6/QZ/build |only QZ-0.1-6/QZ/src/qz/zgerc.f |only QZ-0.1-6/QZ/src/qz/zgeru.f |only QZ-0.1-7/QZ/ChangeLog | 4 ++ QZ-0.1-7/QZ/DESCRIPTION | 20 ++++++++------ QZ-0.1-7/QZ/MD5 | 24 ++++++++--------- QZ-0.1-7/QZ/README.md |only QZ-0.1-7/QZ/configure | 51 ++++++++++++++++++++++++++++---------- QZ-0.1-7/QZ/configure.ac | 35 +++++++++++++++++--------- QZ-0.1-7/QZ/inst/doc/QZ-guide.R |only QZ-0.1-7/QZ/inst/doc/QZ-guide.pdf |binary QZ-0.1-7/QZ/src/Makevars.in | 2 - QZ-0.1-7/QZ/src/Makevars.win | 6 ++-- QZ-0.1-7/QZ/src/R_dtgsen.c | 2 - QZ-0.1-7/QZ/src/qz/xerbla.f | 4 +- 16 files changed, 94 insertions(+), 54 deletions(-)
Title: Missing Outcome Data in Health Economic Evaluation
Description: Contains a suite of functions for health economic evaluations with missing outcome data.
The package can fit different types of statistical models under a fully Bayesian approach using the software 'JAGS' (which should be installed locally and which is loaded in 'missingHE' via the 'R' package 'R2jags').
Three classes of models can be fitted under a variety of missing data assumptions: selection models, pattern mixture models and hurdle models.
In addition to model fitting, 'missingHE' provides a set of specialised functions to assess model convergence and summarise the statistical and economic results using different types of measures and graphs.
The methods implemented are described in Mason (2018) <doi:10.1002/hec.3793>, Molenberghs (2000) <doi:10.1007/978-1-4419-0300-6_18> and Gabrio (2019) <doi:10.1002/sim.8045>.
Author: Andrea Gabrio [aut, cre]
Maintainer: Andrea Gabrio <ucakgab@ucl.ac.uk>
Diff between missingHE versions 1.0.0 dated 2019-05-03 and 1.0.1 dated 2019-06-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/write_pattern.R | 18 ++++++++++++------ README.md | 10 ++++++++-- 4 files changed, 26 insertions(+), 14 deletions(-)
Title: The Hellinger Correlation
Description: Empirical value of the Hellinger correlation, which is a new measure of dependence between
two continuous random variables that satisfies a set of 7 axioms that
any valid measure of dependence should satisfy. More details can be found in Geenens and Lafaye De Micheaux (2018) <arXiv:1810.10276>.
Author: Gery Geenens [aut],
Pierre Lafaye De Micheaux [aut, cre]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between HellCor versions 1.0.1 dated 2018-11-02 and 1.1 dated 2019-06-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/HISTORY | 7 +++++++ man/HellCor.Rd | 2 +- src/HellCor_init.c | 4 +++- 5 files changed, 19 insertions(+), 10 deletions(-)
Title: Genetic Analysis Package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, statistics
in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental
covariates.
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.1-22 dated 2018-06-08 and 1.2.1 dated 2019-06-05
gap-1.1-22/gap/inst/doc/h2.Rnw |only gap-1.1-22/gap/inst/doc/h2.pdf |only gap-1.1-22/gap/inst/doc/pedtodot.R |only gap-1.1-22/gap/inst/doc/pedtodot.Rnw |only gap-1.1-22/gap/inst/doc/pedtodot.pdf |only gap-1.1-22/gap/inst/doc/rnews.Rnw |only gap-1.1-22/gap/inst/doc/rnews.pdf |only gap-1.1-22/gap/inst/tests |only gap-1.1-22/gap/man/PD.Rd |only gap-1.1-22/gap/man/aldh2.Rd |only gap-1.1-22/gap/man/apoeapoc.Rd |only gap-1.1-22/gap/man/cf.Rd |only gap-1.1-22/gap/man/crohn.Rd |only gap-1.1-22/gap/man/fa.Rd |only gap-1.1-22/gap/man/fsnps.Rd |only gap-1.1-22/gap/man/hla.Rd |only gap-1.1-22/gap/man/l51.Rd |only gap-1.1-22/gap/man/lukas.Rd |only gap-1.1-22/gap/man/mao.Rd |only gap-1.1-22/gap/man/meyer.Rd |only gap-1.1-22/gap/man/mfblong.Rd |only gap-1.1-22/gap/man/nep499.Rd |only gap-1.1-22/gap/vignettes/1-1-13.pdf |only gap-1.1-22/gap/vignettes/h2.Rnw |only gap-1.1-22/gap/vignettes/peddraw.pdf |only gap-1.1-22/gap/vignettes/pedigrees.rda |only gap-1.1-22/gap/vignettes/pedtodot.Rnw |only gap-1.1-22/gap/vignettes/rnews.Rnw |only gap-1.2.1/gap/ChangeLog | 55 +++ gap-1.2.1/gap/DESCRIPTION | 17 - gap-1.2.1/gap/INDEX | 31 - gap-1.2.1/gap/MD5 | 229 +++++--------- gap-1.2.1/gap/NAMESPACE | 18 - gap-1.2.1/gap/R/AE3.R | 2 gap-1.2.1/gap/R/KCC.R | 4 gap-1.2.1/gap/R/MCMCgrm.R | 2 gap-1.2.1/gap/R/METAL_forestplot.R |only gap-1.2.1/gap/R/gc.em.R | 2 gap-1.2.1/gap/R/h2.jags.R |only gap-1.2.1/gap/R/hap.em.R | 2 gap-1.2.1/gap/R/hap.score.R | 2 gap-1.2.1/gap/R/hwe.cc.R | 2 gap-1.2.1/gap/R/hwe.jags.R |only gap-1.2.1/gap/R/masize.R | 2 gap-1.2.1/gap/R/mhtplot.R | 2 gap-1.2.1/gap/R/mhtplot.trunc.R |only gap-1.2.1/gap/R/mhtplot2.R | 2 gap-1.2.1/gap/R/mtdt2.R | 2 gap-1.2.1/gap/R/mvmeta.R | 2 gap-1.2.1/gap/R/qqfun.R | 2 gap-1.2.1/gap/R/sentinels.R |only gap-1.2.1/gap/R/utils.R | 341 ++++++++++++++++++++- gap-1.2.1/gap/build/vignette.rds |binary gap-1.2.1/gap/data/OPG.rda |only gap-1.2.1/gap/data/PD.rda |binary gap-1.2.1/gap/data/aldh2.rda |binary gap-1.2.1/gap/data/apoeapoc.rda |binary gap-1.2.1/gap/data/cf.RData |binary gap-1.2.1/gap/data/cnv.rda |only gap-1.2.1/gap/data/crohn.RData |binary gap-1.2.1/gap/data/datalist | 4 gap-1.2.1/gap/data/fa.RData |binary gap-1.2.1/gap/data/fsnps.RData |binary gap-1.2.1/gap/data/hla.rda |binary gap-1.2.1/gap/data/inf1.rda |only gap-1.2.1/gap/data/jma.cojo.rda |only gap-1.2.1/gap/data/l51.rda |binary gap-1.2.1/gap/data/lukas.rda |binary gap-1.2.1/gap/data/mao.RData |binary gap-1.2.1/gap/data/meyer.rda |binary gap-1.2.1/gap/data/mfblong.rda |binary gap-1.2.1/gap/data/nep499.RData |binary gap-1.2.1/gap/demo/gap.R | 3 gap-1.2.1/gap/inst/JAGS |only gap-1.2.1/gap/inst/doc/gap.R | 36 +- gap-1.2.1/gap/inst/doc/gap.Rnw | 80 ++-- gap-1.2.1/gap/inst/doc/gap.pdf |binary gap-1.2.1/gap/inst/doc/jss.pdf |binary gap-1.2.1/gap/man/AE3.Rd | 1 gap-1.2.1/gap/man/METAL_forestplot.Rd |only gap-1.2.1/gap/man/asplot.Rd | 7 gap-1.2.1/gap/man/ccsize.Rd | 2 gap-1.2.1/gap/man/gap-internal.Rd | 75 ++++ gap-1.2.1/gap/man/gap-package.Rd | 38 +- gap-1.2.1/gap/man/genecounting.Rd | 1 gap-1.2.1/gap/man/h2.jags.Rd |only gap-1.2.1/gap/man/hap.Rd | 3 gap-1.2.1/gap/man/htr.Rd | 1 gap-1.2.1/gap/man/hwe.jags.Rd |only gap-1.2.1/gap/man/makeped.Rd | 2 gap-1.2.1/gap/man/mhtplot.Rd | 6 gap-1.2.1/gap/man/mhtplot.trunc.Rd |only gap-1.2.1/gap/man/pgc.Rd | 2 gap-1.2.1/gap/man/qqunif.Rd | 1 gap-1.2.1/gap/man/sentinels.Rd |only gap-1.2.1/gap/src/2k.c | 4 gap-1.2.1/gap/src/2ld.c | 9 gap-1.2.1/gap/src/hap.h | 1 gap-1.2.1/gap/src/hap_c.c | 19 - gap-1.2.1/gap/src/makeped_c.c | 19 - gap-1.2.1/gap/src/mia.c | 9 gap-1.2.1/gap/src/muvar.c | 4 gap-1.2.1/gap/src/pfc.f | 68 ++-- gap-1.2.1/gap/src/pfc.sim.f | 325 ++++++++++---------- gap-1.2.1/gap/src/pgc.h | 4 gap-1.2.1/gap/src/pgc_c.c | 6 gap-1.2.1/gap/vignettes/figures/ESplot.pdf |binary gap-1.2.1/gap/vignettes/figures/circos-mhtplot.pdf |only gap-1.2.1/gap/vignettes/figures/lukas.pdf |binary gap-1.2.1/gap/vignettes/figures/qqunif.pdf |binary gap-1.2.1/gap/vignettes/gap.Rnw | 80 ++-- 111 files changed, 982 insertions(+), 547 deletions(-)
Title: Simple Interface to 'Microsoft Graph'
Description: A simple interface to the 'Microsoft Graph' API <https://docs.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. Currently, this package aims to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it can be easily extended to cover other services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureGraph versions 1.0.1 dated 2019-05-01 and 1.0.2 dated 2019-06-05
DESCRIPTION | 13 ++++---- MD5 | 22 ++++++------- NEWS.md | 4 ++ R/graph_login.R | 69 +++++++++++++++++++++++-------------------- R/ms_graph.R | 38 ++++++++--------------- README.md | 4 +- inst/doc/intro.Rmd | 2 - inst/doc/intro.html | 2 - man/graph_login.Rd | 10 ++++-- man/ms_graph.Rd | 2 - tests/testthat/test01_auth.R | 6 +-- vignettes/intro.Rmd | 2 - 12 files changed, 90 insertions(+), 84 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-46 dated 2018-11-19 and 0.10-47 dated 2019-06-05
ChangeLog | 11 +++++++++++ DESCRIPTION | 6 +++--- MD5 | 25 +++++++++++++------------ data/NelPlo.rda |binary data/USeconomic.rda |binary data/bev.rda |binary data/camp.rda |binary data/ice.river.rda |binary data/nino.rda |binary data/tcm.rda |binary data/tcmd.rda |binary src/cfuncs.f95 |only src/dsumsl.f | 16 +++++++++------- src/formats.c | 24 +++++++++++++++++++----- 14 files changed, 55 insertions(+), 27 deletions(-)
Title: Access and Summarise World Health Organisation Tuberculosis data
Description: Quickly and easily import analysis ready
Tuberculosis (TB) burden data, from the World Health Organisation
(WHO), into R. The aim of getTBinR is to allow researchers, and other
interested individuals, to quickly and easily gain access to a
detailed TB data set and to start using it to derive key insights. It
provides a consistent set of tools that can be used to rapidly
evaluate hypotheses on a widely used data set before they are explored
further using more complex methods or more detailed data. These tools
include: generic plotting and mapping functions; a data dictionary
search tool; an interactive shiny dashboard; and an automated, country
level, TB report. For newer R users, this package reduces the barrier
to entry by handling data import, munging, and visualisation. All
plotting and mapping functions are built with ggplot2 so can be
readily extended.
Author: Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>)
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between getTBinR versions 0.6.0 dated 2019-05-23 and 0.6.1 dated 2019-06-05
DESCRIPTION | 10 +-- MD5 | 20 +++---- NAMESPACE | 1 NEWS.md | 15 ++++- R/get_tb_burden.R | 23 +++----- R/summarise_tb_burden.R | 11 +++ README.md | 59 ++++++++++----------- inst/doc/case_fatality_rate.html | 4 - inst/doc/case_study_global_trends.html | 4 - inst/doc/intro.html | 84 +++++++++++++++--------------- tests/testthat/test-summarise_tb_burden.R | 12 ++++ 11 files changed, 137 insertions(+), 106 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-1 dated 2019-03-19 and 1.7-2 dated 2019-06-05
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 10 ++++++---- R/naiveBayes.R | 2 +- R/svm.R | 18 +++++++++++++++--- build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/svmdoc.Rnw | 2 +- inst/doc/svmdoc.pdf |binary inst/doc/svminternals.pdf |binary man/svm.Rd | 39 +++++++++++++++++++++++++++++++++++++-- man/write.svm.Rd | 15 ++++++++++----- vignettes/svmdoc.Rnw | 2 +- 13 files changed, 94 insertions(+), 33 deletions(-)
Title: Simulation of Dynamic Microbial Inactivation
Description: Prediction and adjustment to experimental data of microbial
inactivation. Several models available in the literature are implemented.
Author: Alberto Garre [aut, cre],
Pablo S. Fernandez [aut],
Jose A. Egea [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between bioinactivation versions 1.2.1 dated 2017-12-15 and 1.2.2 dated 2019-06-05
DESCRIPTION | 10 MD5 | 23 - NEWS.md | 5 R/function_mapping.R | 9 R/isothermal_fit.R | 12 R/isothermal_models.R | 24 + R/methods_s3_plot.R | 2 R/metselaar_model.R |only build/vignette.rds |binary inst/CITATION | 2 inst/doc/inactivation.html | 748 +++++++++++++++++++++++++++++---------------- man/Metselaar_iso.Rd |only man/check_model_params.Rd | 3 man/dMetselaar_model.Rd |only 14 files changed, 562 insertions(+), 276 deletions(-)
More information about bioinactivation at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-28 2.1
Title: Functions to Perform Isotonic Regression
Description: Linear order and unimodal order (univariate)
isotonic regression; bivariate isotonic regression
with linear order on both variables.
Author: Rolf Turner <r.turner@auckland.ac.nz>
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between Iso versions 0.0-17 dated 2015-06-01 and 0.0-18 dated 2019-06-05
ChangeLog | 7 +++++++ DESCRIPTION | 9 +++++---- MD5 | 28 ++++++++++++++++++++-------- NAMESPACE | 1 + R/ufit.R | 4 ++-- build |only data |only inst/doc |only inst/draft0.tex |only inst/ufit.r | 6 +++--- inst/unimode.r | 8 ++++---- man/vigour.Rd |only src/init.c |only src/ufit.f | 8 ++++---- src/unimode.f | 10 +++++----- vignettes |only 16 files changed, 51 insertions(+), 30 deletions(-)