Title: Shiny Apps on Crunch
Description: To facilitate building custom dashboards on the Crunch data
platform <https://crunch.io/>, the 'crunchy' package provides tools for
working with 'shiny'. These tools include utilities to manage authentication
and authorization automatically and custom stylesheets to help match the
look and feel of the Crunch web application. The package also includes
several gadgets for use in 'RStudio'.
Author: Neal Richardson [aut],
Jonathan Keane [aut],
Gordon Shotwell [aut],
Mike Malecki [aut, cre]
Maintainer: Mike Malecki <mike@crunch.io>
Diff between crunchy versions 0.3.0 dated 2019-04-03 and 0.3.1 dated 2019-06-06
DESCRIPTION | 18 MD5 | 28 build/vignette.rds |binary inst/doc/flexdashboards.html | 628 ++++------ tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/001.json | 2 tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/001.png |binary tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/002.json | 2 tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/002.png |binary tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/003.json | 2 tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/003.png |binary tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/004.json | 2 tests/testthat/gadgets/makeArrayGadget/tests/mytest-expected/004.png |binary tests/testthat/gadgets/makeArrayGadget/tests/no_interaction_test-expected/001.json | 2 tests/testthat/gadgets/makeArrayGadget/tests/no_interaction_test-expected/001.png |binary tests/testthat/test-gadgets.R | 7 15 files changed, 303 insertions(+), 388 deletions(-)
Title: A 'dplyr' Interface for Crunch
Description: In order to facilitate analysis of datasets hosted on the Crunch
data platform <http://crunch.io/>, the 'crplyr' package implements 'dplyr'
methods on top of the Crunch backend. The usual methods 'select', 'filter',
'group_by', 'summarize', and 'collect' are implemented in such a way as to
perform as much computation on the server and pull as little data locally
as possible.
Author: Neal Richardson [aut],
Jonathan Keane [aut],
Gordon Shotwell [aut],
Mike Malecki [aut, cre]
Maintainer: Mike Malecki <mike@crunch.io>
Diff between crplyr versions 0.3.0 dated 2019-04-03 and 0.3.1 dated 2019-06-06
DESCRIPTION | 18 - MD5 | 10 NEWS.md | 3 build/vignette.rds |binary inst/doc/plotting.html | 611 +++++++++++++++++++------------------------ tests/testthat/test-mutate.R | 4 6 files changed, 297 insertions(+), 349 deletions(-)
Title: Calculates Critical Test Statistics to Control False Discovery
Rates in Marginal Effects Plots
Description: Implements the procedures suggested in Esarey and Sumner (2017) <http://justinesarey.com/interaction-overconfidence.pdf> for controlling the false discovery rate when constructing marginal effects plots for models with interaction terms.
Author: Justin Esarey and Jane Lawrence Sumner
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between interactionTest versions 1.1 dated 2018-11-30 and 1.2 dated 2019-06-06
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/fdrInteraction.R | 11 ++++++++--- man/fdrInteraction.Rd | 10 ++++++++-- 4 files changed, 24 insertions(+), 13 deletions(-)
More information about interactionTest at CRAN
Permanent link
Title: An 'API' Client for the 'Alteryx' Gallery
Description: A tool to access each of the 'Alteryx' Gallery 'API' endpoints.
Users can queue jobs, poll job status, and retrieve application output as
a data frame. You will need an 'Alteryx' Server license and have 'Alteryx'
Gallery running to utilize this package. The 'API' is accessed through the
'URL' that you setup for the server running 'Alteryx' Gallery and more
information on the endpoints can be found at
<https://gallery.alteryx.com/api-docs/>.
Author: Michael Treadwell
Maintainer: Michael Treadwell <michael.treadwell@interworks.com>
Diff between alterryx versions 0.4.0 dated 2018-11-21 and 0.5.0 dated 2019-06-06
alterryx-0.4.0/alterryx/R/api.R |only alterryx-0.5.0/alterryx/DESCRIPTION | 6 alterryx-0.5.0/alterryx/MD5 | 61 +- alterryx-0.5.0/alterryx/NAMESPACE | 12 alterryx-0.5.0/alterryx/NEWS.md | 9 alterryx-0.5.0/alterryx/R/admin_api.R |only alterryx-0.5.0/alterryx/R/alteryx_app_admin.R |only alterryx-0.5.0/alterryx/R/alteryx_job.R | 29 - alterryx-0.5.0/alterryx/R/checkers.R | 30 - alterryx-0.5.0/alterryx/R/migration_api.R |only alterryx-0.5.0/alterryx/R/request.R | 72 ++ alterryx-0.5.0/alterryx/R/signature.R | 16 alterryx-0.5.0/alterryx/R/subscription_api.R |only alterryx-0.5.0/alterryx/R/utils.R | 34 + alterryx-0.5.0/alterryx/R/zzz.R |only alterryx-0.5.0/alterryx/README.md | 165 +++++ alterryx-0.5.0/alterryx/build/vignette.rds |binary alterryx-0.5.0/alterryx/inst/doc/using_alterryx.html | 413 +++++++++++---- alterryx-0.5.0/alterryx/man/alteryx_app_admin.Rd |only alterryx-0.5.0/alterryx/man/app_jobs.Rd | 2 alterryx-0.5.0/alterryx/man/build_request_url.Rd | 7 alterryx-0.5.0/alterryx/man/build_signature.Rd | 4 alterryx-0.5.0/alterryx/man/cat_paste.Rd |only alterryx-0.5.0/alterryx/man/check_keys.Rd | 5 alterryx-0.5.0/alterryx/man/download_app.Rd | 2 alterryx-0.5.0/alterryx/man/download_app_admin.Rd |only alterryx-0.5.0/alterryx/man/generate_required_headers.Rd | 5 alterryx-0.5.0/alterryx/man/get_app.Rd | 2 alterryx-0.5.0/alterryx/man/get_app_admin.Rd |only alterryx-0.5.0/alterryx/man/get_app_questions.Rd | 2 alterryx-0.5.0/alterryx/man/get_job_output.Rd | 2 alterryx-0.5.0/alterryx/man/get_migration_form.Rd |only alterryx-0.5.0/alterryx/man/migrate.Rd |only alterryx-0.5.0/alterryx/man/running_jobs.Rd | 2 alterryx-0.5.0/alterryx/man/sign_base_string.Rd | 4 alterryx-0.5.0/alterryx/man/submit_get_request.Rd | 8 alterryx-0.5.0/alterryx/man/submit_post_request.Rd | 13 alterryx-0.5.0/alterryx/man/submit_put_request.Rd |only 38 files changed, 739 insertions(+), 166 deletions(-)
Title: Calculates the Test-Statistic for the Drift Burst Hypothesis
Description: Calculates the T-Statistic for the drift burst hypothesis from the working paper Christensen, Oomen and Reno (2018) <DOI:10.2139/ssrn.2842535>. The authors' MATLAB code is available upon request, see: <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2842535>.
Author: Emil Sjoerup
Maintainer: Emil Sjoerup <emilsjoerup@live.dk>
Diff between DriftBurstHypothesis versions 0.1.2 dated 2019-04-14 and 0.1.3 dated 2019-06-06
ChangeLog | 12 ++++++ DESCRIPTION | 9 ++--- MD5 | 21 ++++++----- NAMESPACE | 12 +++++- R/ClassMethods.R |only R/Driftbursts.R | 93 ++++++++++++++++++++++++++++------------------------ build/partial.rdb |binary man/drift_bursts.Rd | 70 ++++++++++++++++++++++++++++++--------- src/DBH.cpp | 67 +++++++++++++++++-------------------- src/Makevars | 13 ------- src/RcppExports.cpp | 2 - tests |only 12 files changed, 176 insertions(+), 123 deletions(-)
More information about DriftBurstHypothesis at CRAN
Permanent link
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances, and point-counting data with the chi-square distance. Also included are tools to plot compositional and point-counting data on ternary diagrams and point-counting data on radial plots, to calculate the sample size required for specified levels of statistical precision, and to assess the effects of hydraulic sorting on detrital compositions. Includes an intuitive query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 2.2 dated 2018-10-06 and 2.3 dated 2019-06-06
DESCRIPTION | 13 +++++++------ MD5 | 40 ++++++++++++++++++++-------------------- R/gui.R | 39 ++++++++++++++++++++++++++++++++++----- R/indscal.R | 2 +- R/io.R | 30 +++++++++++++++++------------- R/plot.R | 4 ++-- R/radialplot.R | 30 ++++++++++++++++++++---------- R/srd.R | 2 +- R/toolbox.R | 24 ++++++++++++++++-------- README.md | 11 ++++++----- data/Namib.rda |binary man/central.Rd | 6 +++++- man/plot.GPA.Rd | 4 ++-- man/plot.INDSCAL.Rd | 6 +++--- man/plot.MDS.Rd | 6 +++--- man/plot.compositional.Rd | 3 ++- man/plot.minsorting.Rd | 3 ++- man/plot.ternary.Rd | 5 +++-- man/procrustes.Rd | 6 +++--- man/provenance.Rd | 2 -- man/ternary.ellipse.Rd | 10 ++++++---- 21 files changed, 153 insertions(+), 93 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 2.6 dated 2019-05-04 and 2.7 dated 2019-06-06
DESCRIPTION | 10 - MD5 | 105 +++++++++--------- NAMESPACE | 1 R/IsoplotR.R | 12 +- R/UPb.R | 249 +++++++++++++++++++++++++++++++++++++------ R/age.R | 78 ++++++------- R/agespectrum.R | 80 ++++++++----- R/cad.R | 83 ++++++++------ R/central.R | 5 R/commonPb.R | 32 ++++- R/concordia.R | 232 +++++++++++++++++++++++++++------------- R/constants.R | 3 R/discordia.R | 130 +++++++++++++++------- R/diseq.R | 298 +++++++++++++++++++++++++++++++++++++++------------- R/documentation.R | 9 - R/errorellipse.R | 43 +++++-- R/evolution.R | 37 ++++-- R/fissiontracks.R | 3 R/helioplot.R | 28 ++++ R/io.R | 56 +++++---- R/isochron.R | 42 +++++-- R/kde.R | 49 +++++--- R/ludwig.R | 22 ++- R/mds.R | 4 R/peakfit.R | 64 ++++------- R/radialplot.R | 75 ++++++++----- R/titterington.R | 7 - R/toolbox.R | 28 ++++ R/weightedmean.R | 70 ++++++++---- R/york.R | 85 +++++++++----- data/examples.rda |binary inst/UPb7.csv |only inst/UPb8.csv |only man/IsoplotR.Rd | 8 - man/Pb0corr.Rd | 2 man/age.Rd | 55 +++------ man/agespectrum.Rd | 55 ++++++--- man/cad.Rd | 56 +++++---- man/concordia.Rd | 81 +++++++++----- man/data2york.Rd | 43 ++++--- man/diseq.Rd |only man/ellipse.Rd | 8 - man/evolution.Rd | 33 ++++- man/examples.Rd | 10 - man/helioplot.Rd | 26 +++- man/isochron.Rd | 40 ++++-- man/kde.Rd | 34 +++-- man/mds.Rd | 3 man/peakfit.Rd | 37 +++--- man/radialplot.Rd | 54 ++++++--- man/read.data.Rd | 26 +--- man/scatterplot.Rd | 24 +++- man/titterington.Rd | 4 man/weightedmean.Rd | 53 ++++++--- man/york.Rd | 6 - 55 files changed, 1734 insertions(+), 864 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string manipulation.
Since then, the 'fs' and 'strex' packages emerged, offering functionality
previously given by this package (but it's done better in these new ones).
Those packages have hence almost pushed 'filesstrings' into extinction.
However, it still has a small number of unique, handy file manipulation
functions which can be seen in the vignette.
One example is a function to remove spaces from all file names in a
directory.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.1.2 dated 2019-05-29 and 3.1.3 dated 2019-06-06
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/files.R | 20 +++++++++++--------- build/partial.rdb |binary inst/doc/files.html | 4 ++-- tests/testthat/test_strings.R | 2 +- 7 files changed, 31 insertions(+), 23 deletions(-)
Title: Systematic Conservation Prioritization in R
Description: Conservation prioritization using integer
programming techniques. To solve large-scale problems, users
should install the 'gurobi' optimizer
(available from <http://www.gurobi.com/>).
Author: Jeffrey O Hanson [aut],
Richard Schuster [aut, cre],
Nina Morrell [aut],
Matthew Strimas-Mackey [aut],
Matthew E Watts [aut],
Peter Arcese [aut],
Joeseph Bennett [aut],
Hugh P Possingham [aut]
Maintainer: Richard Schuster <richard.schuster@glel.carleton.ca>
Diff between prioritizr versions 4.0.4 dated 2019-04-12 and 4.1.1 dated 2019-06-06
prioritizr-4.0.4/prioritizr/man/figures/logo.png |only prioritizr-4.1.1/prioritizr/DESCRIPTION | 40 prioritizr-4.1.1/prioritizr/MD5 | 586 +- prioritizr-4.1.1/prioritizr/NAMESPACE | 350 - prioritizr-4.1.1/prioritizr/R/ArrayParameter-proto.R | 288 - prioritizr-4.1.1/prioritizr/R/Collection-proto.R | 334 - prioritizr-4.1.1/prioritizr/R/ConservationModifier-proto.R | 362 - prioritizr-4.1.1/prioritizr/R/ConservationProblem-proto.R | 1206 ++-- prioritizr-4.1.1/prioritizr/R/Constraint-proto.R | 48 prioritizr-4.1.1/prioritizr/R/Decision-proto.R | 50 prioritizr-4.1.1/prioritizr/R/Id.R | 114 prioritizr-4.1.1/prioritizr/R/MiscParameter-proto.R | 208 prioritizr-4.1.1/prioritizr/R/Objective-proto.R | 44 prioritizr-4.1.1/prioritizr/R/OptimizationProblem-methods.R | 622 +- prioritizr-4.1.1/prioritizr/R/OptimizationProblem-proto.R | 402 - prioritizr-4.1.1/prioritizr/R/Parameter-proto.R | 152 prioritizr-4.1.1/prioritizr/R/Parameters-proto.R | 330 - prioritizr-4.1.1/prioritizr/R/Penalty-proto.R | 50 prioritizr-4.1.1/prioritizr/R/Portfolio-proto.R | 188 prioritizr-4.1.1/prioritizr/R/RcppExports.R | 346 - 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prioritizr-4.1.1/prioritizr/R/add_rsymphony_solver.R | 262 prioritizr-4.1.1/prioritizr/R/add_semicontinuous_decisions.R | 168 prioritizr-4.1.1/prioritizr/R/add_shuffle_portfolio.R | 308 - prioritizr-4.1.1/prioritizr/R/binary_stack.R | 100 prioritizr-4.1.1/prioritizr/R/boundary_matrix.R | 350 - prioritizr-4.1.1/prioritizr/R/branch_matrix.R | 112 prioritizr-4.1.1/prioritizr/R/category_layer.R | 102 prioritizr-4.1.1/prioritizr/R/category_vector.R | 122 prioritizr-4.1.1/prioritizr/R/compile.R | 266 prioritizr-4.1.1/prioritizr/R/connected_matrix.R | 360 - prioritizr-4.1.1/prioritizr/R/connectivity_matrix.R | 318 - prioritizr-4.1.1/prioritizr/R/constraints.R | 188 prioritizr-4.1.1/prioritizr/R/data.R | 386 - prioritizr-4.1.1/prioritizr/R/decisions.R | 160 prioritizr-4.1.1/prioritizr/R/deprecated.R | 72 prioritizr-4.1.1/prioritizr/R/fast_extract.R | 332 - prioritizr-4.1.1/prioritizr/R/feature_abundances.R | 324 - prioritizr-4.1.1/prioritizr/R/feature_names.R | 134 prioritizr-4.1.1/prioritizr/R/feature_representation.R | 863 +-- prioritizr-4.1.1/prioritizr/R/internal.R | 626 +- prioritizr-4.1.1/prioritizr/R/intersecting_units.R | 340 - 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Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre],
Randy Lai [ctb],
Dmitri Grominski [ctb],
Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.16.5 dated 2019-03-22 and 0.16.6 dated 2019-06-06
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++---------- NEWS.md | 7 ++++++ R/aaa.R | 5 ++-- R/package.R | 15 +++++++++---- README.md | 30 +++++++++++++++++++------- build/vignette.rds |binary inst/CITATION | 2 - inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 4 +-- inst/doc/Julia_in_RMarkdown.html | 4 +-- inst/julia/install_dependency.jl | 2 - tests/testthat/test_julia_package.R | 5 ++++ tests/testthat/test_rmd.R | 2 - 13 files changed, 70 insertions(+), 38 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Provides joint analysis and imputation of (generalized)
linear and cumulative logit regression models, (generalized) linear and
cumulative logit mixed models and parametric (Weibull) as well as Cox
proportional hazards survival models with incomplete (covariate) data in
the Bayesian framework.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<http://mcmc-jags.sourceforge.net> with the help of
the package 'rjags'.
It also provides summary and plotting functions for the output and allows
to export imputed values.
Author: Nicole S. Erler [aut, cre] (<https://orcid.org/0000-0002-9370-6832>)
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 0.5.1 dated 2019-05-07 and 0.5.2 dated 2019-06-06
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NEWS.md | 6 +++ R/summary.JointAI.R | 3 + inst/doc/AfterFitting.html | 62 +++++++++++++++---------------- inst/doc/MCMCsettings.html | 4 +- inst/doc/MinimalExample.html | 4 +- inst/doc/ModelSpecification.R | 2 - inst/doc/ModelSpecification.html | 8 ++-- inst/doc/SelectingParameters.html | 4 +- inst/doc/VisualizingIncompleteData.html | 4 +- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary 13 files changed, 68 insertions(+), 61 deletions(-)
More information about EstimationTools at CRAN
Permanent link
Title: Functions and R Code to Accompany Derivatives Markets
Description: A set of pricing and expository functions that should
be useful in teaching a course on financial derivatives.
Author: Robert McDonald [aut, cre, cph]
Maintainer: Robert McDonald <rmcd1024@gmail.com>
Diff between derivmkts versions 0.2.3 dated 2018-06-19 and 0.2.4 dated 2019-06-06
derivmkts-0.2.3/derivmkts/inst/doc/Notes-on-vectorization.R |only derivmkts-0.2.3/derivmkts/inst/doc/Notes-on-vectorization.Rnw |only derivmkts-0.2.3/derivmkts/inst/doc/Notes-on-vectorization.pdf |only derivmkts-0.2.3/derivmkts/inst/doc/derivmkts-vignette.Rnw |only derivmkts-0.2.3/derivmkts/tests/testthat/implied_test.html |only derivmkts-0.2.3/derivmkts/vignettes/Notes-on-vectorization.Rnw |only derivmkts-0.2.3/derivmkts/vignettes/derivmkts-vignette.Rnw |only derivmkts-0.2.4/derivmkts/DESCRIPTION | 15 - derivmkts-0.2.4/derivmkts/LICENSE | 2 derivmkts-0.2.4/derivmkts/MD5 | 54 ++--- derivmkts-0.2.4/derivmkts/NAMESPACE | 2 derivmkts-0.2.4/derivmkts/NEWS.md | 19 + derivmkts-0.2.4/derivmkts/R/greeks.R | 12 - derivmkts-0.2.4/derivmkts/R/jumps.R | 98 ++++++---- derivmkts-0.2.4/derivmkts/R/simprice.R |only derivmkts-0.2.4/derivmkts/build/vignette.rds |binary derivmkts-0.2.4/derivmkts/inst/doc/derivmkts-vignette.R | 88 ++++++-- derivmkts-0.2.4/derivmkts/inst/doc/derivmkts-vignette.Rmd |only derivmkts-0.2.4/derivmkts/inst/doc/derivmkts-vignette.pdf |binary derivmkts-0.2.4/derivmkts/man/arithasianmc.Rd | 1 derivmkts-0.2.4/derivmkts/man/arithavgpricecv.Rd | 1 derivmkts-0.2.4/derivmkts/man/asiangeomavg.Rd | 1 derivmkts-0.2.4/derivmkts/man/barriers.Rd | 1 derivmkts-0.2.4/derivmkts/man/geomasianmc.Rd | 1 derivmkts-0.2.4/derivmkts/man/greeks.Rd | 10 - derivmkts-0.2.4/derivmkts/man/jumps.Rd | 12 - derivmkts-0.2.4/derivmkts/man/simprice.Rd |only derivmkts-0.2.4/derivmkts/tests/testthat/greeks_tests.R | 12 + derivmkts-0.2.4/derivmkts/tests/testthat/jump_tests.R | 21 +- derivmkts-0.2.4/derivmkts/tests/testthat/option_testvalues.Rdata |binary derivmkts-0.2.4/derivmkts/tests/testthat/simprice_tests.R |only derivmkts-0.2.4/derivmkts/tests/testthat/test.R | 1 derivmkts-0.2.4/derivmkts/vignettes/derivmkts-vignette.Rmd |only derivmkts-0.2.4/derivmkts/vignettes/derivmkts.bib | 12 + 34 files changed, 238 insertions(+), 125 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides
stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 2.1.2 dated 2019-05-29 and 2.1.3 dated 2019-06-06
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 10 ++++++++++ R/new.R | 2 +- build/tibble.pdf |binary tests/testthat/helper-error.R |only tests/testthat/test-data-frame.R | 2 +- tests/testthat/test-tbl-df.R | 2 +- 8 files changed, 23 insertions(+), 12 deletions(-)
Title: Cancer Registry Data Analysis and Visualisation
Description: Tools for basic and advance cancer statistics and graphics.
Groups individual data, merges registry data and population data, calculates age-specific rate, age-standardized rate, estimated annual percentage rate with standards error. Creates graphics across variable and
time, such as age-specific trends, bar chart and period-cohort trends.
Author: Mathieu Laversanne [aut, cre],
Cancer Surveillance Unit [cph]
Maintainer: Mathieu Laversanne <laversannem@iarc.fr>
Diff between Rcan versions 1.3.70 dated 2019-05-28 and 1.3.71 dated 2019-06-06
Rcan-1.3.70/Rcan/data/csu_CI5X_data.rda |only Rcan-1.3.70/Rcan/data/csu_ci5x_mean.rda |only Rcan-1.3.70/Rcan/man/csu_CI5X_data.Rd |only Rcan-1.3.70/Rcan/man/csu_ci5x_mean.Rd |only Rcan-1.3.71/Rcan/DESCRIPTION | 8 ++--- Rcan-1.3.71/Rcan/MD5 | 38 +++++++++++++------------- Rcan-1.3.71/Rcan/R/csu_ageSpecific.R | 2 - Rcan-1.3.71/Rcan/R/csu_ageSpecific_top.R | 6 ++-- Rcan-1.3.71/Rcan/R/csu_asr.R | 7 ++++ Rcan-1.3.71/Rcan/R/csu_bar_top.R | 3 ++ Rcan-1.3.71/Rcan/R/csu_merge_cases_pop.R | 5 ++- Rcan-1.3.71/Rcan/R/helper.r | 37 ++++++++++++++----------- Rcan-1.3.71/Rcan/build/partial.rdb |binary Rcan-1.3.71/Rcan/data/csu_CI5XI_data.rda |only Rcan-1.3.71/Rcan/data/csu_ci5_mean.rda |only Rcan-1.3.71/Rcan/data/datalist | 4 +- Rcan-1.3.71/Rcan/man/Rcan-package.Rd | 8 ++--- Rcan-1.3.71/Rcan/man/csu_CI5XI_data.Rd |only Rcan-1.3.71/Rcan/man/csu_ageSpecific.Rd | 19 ++++++------- Rcan-1.3.71/Rcan/man/csu_ageSpecific_top.Rd | 28 ++++++++++--------- Rcan-1.3.71/Rcan/man/csu_bar_top.Rd | 17 ++++++++--- Rcan-1.3.71/Rcan/man/csu_ci5_mean.Rd |only Rcan-1.3.71/Rcan/man/csu_time_trend.Rd | 7 ++-- Rcan-1.3.71/Rcan/man/csu_trendCohortPeriod.Rd | 4 +- 24 files changed, 111 insertions(+), 82 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.0.17 dated 2019-03-10 and 1.1.0 dated 2019-06-06
DESCRIPTION | 13 -- MD5 | 38 +++--- NAMESPACE | 7 - NEWS.md | 10 + R/convert_case.R | 6 R/efc.R | 60 ++++----- R/get_model_labels.R | 17 +- R/helpfunctions.R | 8 - R/read_write.R | 6 R/remove_label.R |only R/select_helpers.R | 13 +- README.md | 5 build/vignette.rds |binary inst/doc/intro_sjlabelled.R | 5 inst/doc/intro_sjlabelled.Rmd | 7 - inst/doc/intro_sjlabelled.html | 254 +++++++++++++++++++++-------------------- inst/doc/labelleddata.html | 13 +- inst/doc/quasiquotation.html | 117 ++++++++++-------- man/convert_case.Rd | 4 man/remove_label.Rd |only vignettes/intro_sjlabelled.Rmd | 7 - 21 files changed, 309 insertions(+), 281 deletions(-)
Title: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models
Description: At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code.
Author: Amine Gassem [cre, aut],
Bruno Bieth [aut],
Irina Baltcheva [aut],
Thomas Dumortier [aut],
Christian Bartels [aut],
Souvik Bhattacharya [aut],
Inga Ludwig [aut],
Ines Paule [aut],
Didier Renard [aut],
Qing Xi Ooi [ctr],
Novartis Pharma AG [cph]
Maintainer: Amine Gassem <contact@ag-study.com>
Diff between ggPMX versions 0.9.3 dated 2019-05-26 and 0.9.4 dated 2019-06-06
DESCRIPTION | 6 - MD5 | 18 +-- R/pmx-reader.R | 90 ++++++++------- R/pmxClass.R | 32 ++--- README.md | 35 ++---- inst/doc/ggPMX-guide.R | 140 ++++++++---------------- inst/doc/ggPMX-guide.Rmd | 266 ++++++++++++---------------------------------- inst/doc/ggPMX-guide.pdf |binary man/read_input.Rd | 6 - vignettes/ggPMX-guide.Rmd | 266 ++++++++++++---------------------------------- 10 files changed, 292 insertions(+), 567 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 0.10-0 dated 2018-06-15 and 1.0-0 dated 2019-06-06
DESCRIPTION | 15 - MD5 | 63 +++--- R/lincon.R | 3 R/onesampb.R | 6 R/print.onesampb.R | 3 R/yuen.R | 4 build/vignette.rds |binary data/Leerkes.rda |binary data/Pygmalion.rda |binary data/WineTasting.rda |binary data/bush.rda |binary data/chile.rda |binary data/diet.rda |binary data/electric.rda |binary data/essays.rda |binary data/eurosoccer.rda |binary data/goggles.rda |binary data/hangover.rda |binary data/invisibility.rda |binary data/movie.rda |binary data/picture.rda |binary data/spider.rda |binary data/swimming.rda |binary data/viagra.rda |binary inst/CITATION | 27 +- inst/NEWS.Rd | 9 inst/doc/WRS2.R |only inst/doc/WRS2.Rnw | 466 ++++++++++++++++++++------------------------------ inst/doc/WRS2.pdf |binary man/diet.Rd | 3 man/onesampb.Rd | 5 vignettes/WRS2.Rnw | 466 ++++++++++++++++++++------------------------------ vignettes/WRS2.bib | 18 + 33 files changed, 476 insertions(+), 612 deletions(-)
Title: Multidimensional Scaling
Description: Implements the following approaches for multidimensional scaling (MDS) based on stress minimization using majorization (smacof): ratio/interval/ordinal/spline MDS on symmetric dissimilarity matrices, MDS with external constraints on the configuration, individual differences scaling (idioscal, indscal), MDS with spherical restrictions, and ratio/interval/ordinal/spline unfolding (circular restrictions, row-conditional). Various tools and extensions like jackknife MDS, bootstrap MDS, permutation tests, MDS biplots, gravity models, unidimensional scaling, drift vectors (asymmetric MDS), classical scaling, and Procrustes are implemented as well.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [aut],
Ingwer Borg [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 1.10-8 dated 2018-06-14 and 2.0-0 dated 2019-06-06
smacof-1.10-8/smacof/R/inverseMDS.R |only smacof-1.10-8/smacof/R/print.imds.R |only smacof-1.10-8/smacof/man/inverseMDS.Rd |only smacof-2.0-0/smacof/DESCRIPTION | 25 - smacof-2.0-0/smacof/MD5 | 139 +++++----- smacof-2.0-0/smacof/NAMESPACE | 13 - smacof-2.0-0/smacof/R/confEllipse.R |only smacof-2.0-0/smacof/R/dhatRowUpdate.R |only smacof-2.0-0/smacof/R/ellipseutil.R |only smacof-2.0-0/smacof/R/jackknife.smacofB.R | 16 - smacof-2.0-0/smacof/R/permtest.smacofR.R | 2 smacof-2.0-0/smacof/R/plot.confell.R |only smacof-2.0-0/smacof/R/plot.icexplore.R | 17 - smacof-2.0-0/smacof/R/plot.smacofR.R | 10 smacof-2.0-0/smacof/R/plot.smacofboot.R | 7 smacof-2.0-0/smacof/R/plot.vmu.R |only smacof-2.0-0/smacof/R/print.vmu.R |only smacof-2.0-0/smacof/R/pstress.R |only smacof-2.0-0/smacof/R/smacofIndDiff.R | 2 smacof-2.0-0/smacof/R/smacofRect.R | 305 +++++++++++++----------- smacof-2.0-0/smacof/R/smacofSym.R | 2 smacof-2.0-0/smacof/R/unfolding.R | 3 smacof-2.0-0/smacof/R/vmu.R |only smacof-2.0-0/smacof/build |only smacof-2.0-0/smacof/data/CanadaNews.rda |binary smacof-2.0-0/smacof/data/Duration.rda |binary smacof-2.0-0/smacof/data/DurationRaw.rda |binary smacof-2.0-0/smacof/data/EW_eng.rda |binary smacof-2.0-0/smacof/data/EW_ger.rda |binary smacof-2.0-0/smacof/data/FaceExp.rda |binary smacof-2.0-0/smacof/data/FaceScale.rda |binary smacof-2.0-0/smacof/data/GOPdtm.rda |binary smacof-2.0-0/smacof/data/Guerry.rda |binary smacof-2.0-0/smacof/data/KIPT.rda |binary smacof-2.0-0/smacof/data/Lawler.rda |binary smacof-2.0-0/smacof/data/OCP.rda |binary smacof-2.0-0/smacof/data/PVQ40.rda |binary smacof-2.0-0/smacof/data/PVQ40agg.rda |binary smacof-2.0-0/smacof/data/Plato7.rda |binary smacof-2.0-0/smacof/data/RockHard.rda |binary smacof-2.0-0/smacof/data/VaziriXu.rda |binary smacof-2.0-0/smacof/data/bread.rda |binary smacof-2.0-0/smacof/data/breakfast.rda |binary smacof-2.0-0/smacof/data/crimes.rda |binary smacof-2.0-0/smacof/data/csrranking.rda |binary smacof-2.0-0/smacof/data/ekman.rda |binary smacof-2.0-0/smacof/data/helm.rda |binary smacof-2.0-0/smacof/data/indvalues.rda |binary smacof-2.0-0/smacof/data/intelligence.rda |binary smacof-2.0-0/smacof/data/kinshipdelta.rda |binary smacof-2.0-0/smacof/data/kinshipscales.rda |binary smacof-2.0-0/smacof/data/morse.rda |binary smacof-2.0-0/smacof/data/morse2.rda |binary smacof-2.0-0/smacof/data/morsescales.rda |binary smacof-2.0-0/smacof/data/partypref.rda |binary smacof-2.0-0/smacof/data/perception.rda |binary smacof-2.0-0/smacof/data/rect_constr.rda |binary smacof-2.0-0/smacof/data/rectangles.rda |binary smacof-2.0-0/smacof/data/stardist.rda |binary smacof-2.0-0/smacof/data/trading.rda |binary smacof-2.0-0/smacof/data/winedat.rda |binary smacof-2.0-0/smacof/data/wish.rda |binary smacof-2.0-0/smacof/inst/NEWS.Rd | 45 +++ smacof-2.0-0/smacof/inst/doc |only smacof-2.0-0/smacof/man/PVQ40.Rd | 11 smacof-2.0-0/smacof/man/bootmds.smacofB.Rd | 6 smacof-2.0-0/smacof/man/bread.rd | 2 smacof-2.0-0/smacof/man/breakfast.Rd | 2 smacof-2.0-0/smacof/man/confEllipse.smacofID.Rd |only smacof-2.0-0/smacof/man/icExplore.Rd | 5 smacof-2.0-0/smacof/man/indvalues.Rd | 33 -- smacof-2.0-0/smacof/man/permtest.smacof.Rd | 2 smacof-2.0-0/smacof/man/plot.smacof.rd | 14 - smacof-2.0-0/smacof/man/smacofRect.Rd | 22 + smacof-2.0-0/smacof/man/trading.rd | 6 smacof-2.0-0/smacof/man/vmu.Rd |only smacof-2.0-0/smacof/vignettes |only 77 files changed, 388 insertions(+), 301 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Thomas Rusch [ctb],
Rudolf Debelak [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 0.16-2 dated 2018-10-03 and 1.0-0 dated 2019-06-06
eRm-0.16-2/eRm/NEWS |only eRm-1.0-0/eRm/DESCRIPTION | 17 - eRm-1.0-0/eRm/MD5 | 39 +-- eRm-1.0-0/eRm/R/NPtest.R | 131 +++++++++++ eRm-1.0-0/eRm/build/vignette.rds |binary eRm-1.0-0/eRm/data/lltmdat1.rda |binary eRm-1.0-0/eRm/data/lltmdat2.rda |binary eRm-1.0-0/eRm/data/lpcmdat.rda |binary eRm-1.0-0/eRm/data/lrsmdat.rda |binary eRm-1.0-0/eRm/data/pcmdat.rda |binary eRm-1.0-0/eRm/data/pcmdat2.rda |binary eRm-1.0-0/eRm/data/raschdat1.rda |binary eRm-1.0-0/eRm/data/raschdat2.rda |binary eRm-1.0-0/eRm/data/raschdat3.rda |binary eRm-1.0-0/eRm/data/raschdat4.rda |binary eRm-1.0-0/eRm/data/rsmdat.rda |binary eRm-1.0-0/eRm/inst/CITATION | 18 + eRm-1.0-0/eRm/inst/NEWS.Rd | 7 eRm-1.0-0/eRm/inst/doc/eRm.pdf |binary eRm-1.0-0/eRm/man/NPtest.Rd | 440 +++++++++++++++++++-------------------- eRm-1.0-0/eRm/man/plotICC.Rd | 246 ++++++++++----------- 21 files changed, 531 insertions(+), 367 deletions(-)
Title: Accurate Numerical Derivatives
Description: Methods for calculating (usually) accurate
numerical first and second order derivatives. Accurate calculations
are done using 'Richardson''s' extrapolation or, when applicable, a
complex step derivative is available. A simple difference
method is also provided. Simple difference is (usually) less accurate
but is much quicker than 'Richardson''s' extrapolation and provides a
useful cross-check.
Methods are provided for real scalar and vector valued functions.
Author: Paul Gilbert and Ravi Varadhan
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between numDeriv versions 2016.8-1 dated 2016-08-26 and 2016.8-1.1 dated 2019-06-06
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- build/vignette.rds |binary inst/doc/Guide.R |only inst/doc/Guide.pdf |binary 5 files changed, 7 insertions(+), 6 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Martin Morgan [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.2.1 dated 2019-04-18 and 1.2.2 dated 2019-06-06
UCSCXenaTools-1.2.1/UCSCXenaTools/inst/doc/xena-apis.R |only UCSCXenaTools-1.2.1/UCSCXenaTools/inst/doc/xena-apis.Rmd |only UCSCXenaTools-1.2.1/UCSCXenaTools/inst/doc/xena-apis.html |only UCSCXenaTools-1.2.1/UCSCXenaTools/vignettes/xena-apis.Rmd |only UCSCXenaTools-1.2.2/UCSCXenaTools/DESCRIPTION | 6 UCSCXenaTools-1.2.2/UCSCXenaTools/MD5 | 58 UCSCXenaTools-1.2.2/UCSCXenaTools/NAMESPACE | 5 UCSCXenaTools-1.2.2/UCSCXenaTools/NEWS.md | 85 UCSCXenaTools-1.2.2/UCSCXenaTools/R/XenaHub-class.R | 507 +-- UCSCXenaTools-1.2.2/UCSCXenaTools/R/api_higher.R | 44 UCSCXenaTools-1.2.2/UCSCXenaTools/R/api_inner.R | 363 +- UCSCXenaTools-1.2.2/UCSCXenaTools/R/api_xq.R | 170 - UCSCXenaTools-1.2.2/UCSCXenaTools/R/data.R | 3 UCSCXenaTools-1.2.2/UCSCXenaTools/R/fetch.R |only UCSCXenaTools-1.2.2/UCSCXenaTools/R/shiny.R | 175 - UCSCXenaTools-1.2.2/UCSCXenaTools/R/simplify.R | 1435 +++++----- UCSCXenaTools-1.2.2/UCSCXenaTools/R/utils-pipe.R | 7 UCSCXenaTools-1.2.2/UCSCXenaTools/R/workflow.R | 883 +++--- UCSCXenaTools-1.2.2/UCSCXenaTools/R/zzz.R | 19 UCSCXenaTools-1.2.2/UCSCXenaTools/README.md | 72 UCSCXenaTools-1.2.2/UCSCXenaTools/build/vignette.rds |binary UCSCXenaTools-1.2.2/UCSCXenaTools/inst/develop.R |only UCSCXenaTools-1.2.2/UCSCXenaTools/inst/doc/USCSXenaTools.R | 136 UCSCXenaTools-1.2.2/UCSCXenaTools/inst/doc/USCSXenaTools.Rmd | 385 -- UCSCXenaTools-1.2.2/UCSCXenaTools/inst/doc/USCSXenaTools.html | 675 ---- UCSCXenaTools-1.2.2/UCSCXenaTools/man/XenaBrowse.Rd | 5 UCSCXenaTools-1.2.2/UCSCXenaTools/man/downloadTCGA.Rd | 2 UCSCXenaTools-1.2.2/UCSCXenaTools/man/fetch.Rd |only UCSCXenaTools-1.2.2/UCSCXenaTools/tests/testthat/test-basic-workflow.R | 30 UCSCXenaTools-1.2.2/UCSCXenaTools/vignettes/USCSXenaTools.Rmd | 385 -- UCSCXenaTools-1.2.2/UCSCXenaTools/vignettes/USCSXenaTools_files |only 31 files changed, 1938 insertions(+), 3512 deletions(-)
Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences. This package is built for speed and
runs in parallel by using 'openMP'. An API for C or C++ is exposed as well.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb],
Chris Muir [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.5.1 dated 2018-06-08 and 0.9.5.2 dated 2019-06-06
stringdist-0.9.5.1/stringdist/inst/doc/loo2014stringdist.pdf |only stringdist-0.9.5.1/stringdist/inst/doc/stringdist_api.pdf |only stringdist-0.9.5.1/stringdist/tests/testthat |only stringdist-0.9.5.1/stringdist/tests/testthat.R |only stringdist-0.9.5.2/stringdist/DESCRIPTION | 13 +- stringdist-0.9.5.2/stringdist/MD5 | 50 +++++----- stringdist-0.9.5.2/stringdist/NEWS | 7 + stringdist-0.9.5.2/stringdist/R/doc_parallel.R | 5 - stringdist-0.9.5.2/stringdist/build |only stringdist-0.9.5.2/stringdist/inst/doc/RJournal_6_111-122-2014.Rnw |only stringdist-0.9.5.2/stringdist/inst/doc/RJournal_6_111-122-2014.pdf |only stringdist-0.9.5.2/stringdist/inst/doc/stringdist_C-Cpp_api.Rnw |only stringdist-0.9.5.2/stringdist/inst/doc/stringdist_C-Cpp_api.pdf |only stringdist-0.9.5.2/stringdist/inst/include/Doxyfile | 2 stringdist-0.9.5.2/stringdist/inst/tinytest |only stringdist-0.9.5.2/stringdist/man/amatch.Rd | 9 + stringdist-0.9.5.2/stringdist/man/seq_amatch.Rd | 5 - stringdist-0.9.5.2/stringdist/man/seq_dist.Rd | 10 +- stringdist-0.9.5.2/stringdist/man/stringdist-parallelization.Rd | 5 - stringdist-0.9.5.2/stringdist/man/stringdist.Rd | 4 stringdist-0.9.5.2/stringdist/src/Rstringdist.c | 4 stringdist-0.9.5.2/stringdist/src/qgram.c | 6 - stringdist-0.9.5.2/stringdist/src/stringdist.c | 9 + stringdist-0.9.5.2/stringdist/tests/tinytest.R |only stringdist-0.9.5.2/stringdist/vignettes |only 25 files changed, 75 insertions(+), 54 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott is the sole author and creator of the BOOM project.
Some code in the BOOM libraries has been modified from other open source
projects. These include Cephes (obtained from Netlib, written by Stephen
L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a
modified version of the R math libraries (R core development team). Original
copyright notices have been maintained in all source files. In these cases,
copyright claimed by Steven L. Scott is limited to modifications made to the
original code. Google claims copyright for code written while Steven
L. Scott was employed at Google from 2008 - 2018, but BOOM is not an
officially supported Google project.
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9 dated 2019-05-17 and 0.9.1 dated 2019-06-06
Boom-0.9.1/Boom/DESCRIPTION | 8 Boom-0.9.1/Boom/MD5 | 79 +-- Boom-0.9.1/Boom/R/plot.dynamic.distribution.R | 7 Boom-0.9.1/Boom/R/prior_specification.R | 7 Boom-0.9.1/Boom/inst/include/Models/DataTypes.hpp | 6 Boom-0.9.1/Boom/inst/include/Models/DoubleModel.hpp | 25 Boom-0.9.1/Boom/inst/include/Models/ExponentialIncrementModel.hpp | 7 Boom-0.9.1/Boom/inst/include/Models/Glm/MvnGivenX.hpp | 207 ++++++- Boom-0.9.1/Boom/inst/include/Models/Glm/PosteriorSamplers/SpikeSlabSampler.hpp | 46 + Boom-0.9.1/Boom/inst/include/Models/Glm/VariableSelectionPrior.hpp | 5 Boom-0.9.1/Boom/inst/include/Models/Glm/WeightedRegressionModel.hpp | 42 + Boom-0.9.1/Boom/inst/include/Models/MvnBase.hpp | 42 - Boom-0.9.1/Boom/inst/include/Models/PosteriorSamplers/GenericGaussianVarianceSampler.hpp | 9 Boom-0.9.1/Boom/inst/include/Models/StateSpace/MultivariateStateSpaceModelBase.hpp | 12 Boom-0.9.1/Boom/inst/include/Models/StateSpace/MultivariateStateSpaceRegressionModel.hpp | 14 Boom-0.9.1/Boom/inst/include/Models/StateSpace/PosteriorSamplers/MvStateSpaceRegressionPosteriorSampler.hpp | 2 Boom-0.9.1/Boom/inst/include/Models/StateSpace/PosteriorSamplers/SharedLocalLevelPosteriorSampler.hpp | 73 +- Boom-0.9.1/Boom/inst/include/Models/StateSpace/StateModels/LocalLevelStateModel.hpp | 3 Boom-0.9.1/Boom/inst/include/Models/StateSpace/StateSpaceModelBase.hpp | 10 Boom-0.9.1/Boom/inst/include/cpputil/Ptr.hpp | 12 Boom-0.9.1/Boom/inst/include/r_interface/list_io.hpp | 15 Boom-0.9.1/Boom/inst/include/r_interface/prior_specification.hpp | 62 +- Boom-0.9.1/Boom/man/diff.double.model.Rd |only Boom-0.9.1/Boom/src/Makevars | 4 Boom-0.9.1/Boom/src/Models/ExponentialIncrementModel.cpp | 6 Boom-0.9.1/Boom/src/Models/Glm/MultivariateRegression.cpp | 25 Boom-0.9.1/Boom/src/Models/Glm/MvnGivenX.cpp | 261 ++++++---- Boom-0.9.1/Boom/src/Models/Glm/PosteriorSamplers/AdaptiveSpikeSlabRegressionSampler.cpp | 4 Boom-0.9.1/Boom/src/Models/Glm/PosteriorSamplers/SpikeSlabSampler.cpp | 77 ++ Boom-0.9.1/Boom/src/Models/Glm/WeightedRegressionModel.cpp | 63 +- Boom-0.9.1/Boom/src/Models/Mixtures/PosteriorSamplers/DirichletProcessSliceSampler.cpp | 74 +- Boom-0.9.1/Boom/src/Models/StateSpace/Filters/SparseVector.cpp | 8 Boom-0.9.1/Boom/src/Models/StateSpace/MultiplexedData.cpp | 5 Boom-0.9.1/Boom/src/Models/StateSpace/MultivariateStateSpaceRegressionModel.cpp | 38 + Boom-0.9.1/Boom/src/Models/StateSpace/PosteriorSamplers/SharedLocalLevelPosteriorSampler.cpp | 136 +++-- Boom-0.9.1/Boom/src/Models/StateSpace/StateModels/LocalLevelStateModel.cpp | 28 - Boom-0.9.1/Boom/src/Models/StateSpace/StateModels/TrigStateModel.cpp | 2 Boom-0.9.1/Boom/src/list_io.cpp | 38 - Boom-0.9.1/Boom/src/prior_specification.cpp | 6 Boom-0.9.1/Boom/src/spike_slab_prior.cpp | 30 - Boom-0.9/Boom/inst/include/Models/StateSpace/MultivariateStateSpaceModel.hpp |only Boom-0.9/Boom/src/Models/StateSpace/MultivariateStateSpaceModel.cpp |only 42 files changed, 1021 insertions(+), 477 deletions(-)
Title: Consistent Significance Controlled Variable Selection in Linear
Regression
Description: Provide consistent significance controlled variable selection procedure with different directions (forward, backward, stepwise) based on diverse criteria (AIC, BIC, adjusted r-square, and p-value). The algorithm selects a final model with only significant variables based on a correction choice of False Discovery Rate, Bonferroni, or no correction.
Author: Jongwook Kim, Adriano Zanin Zambom
Maintainer: Jongwook Kim <jongwook226@gmail.com>
Diff between SignifReg versions 1.1 dated 2019-02-16 and 2.0 dated 2019-06-06
SignifReg-1.1/SignifReg/R/SignifReg-internal.R |only SignifReg-2.0/SignifReg/DESCRIPTION | 10 SignifReg-2.0/SignifReg/MD5 | 19 SignifReg-2.0/SignifReg/NAMESPACE | 10 SignifReg-2.0/SignifReg/R/SignifReg.R | 829 ++++++++++++----------- SignifReg-2.0/SignifReg/R/add1SignifReg.R |only SignifReg-2.0/SignifReg/R/add1summary.R |only SignifReg-2.0/SignifReg/R/drop1SignifReg.R |only SignifReg-2.0/SignifReg/R/drop1summary.R |only SignifReg-2.0/SignifReg/build |only SignifReg-2.0/SignifReg/man/SignifReg-package.Rd |only SignifReg-2.0/SignifReg/man/SignifReg.Rd | 85 +- SignifReg-2.0/SignifReg/man/add1SignifReg.Rd |only SignifReg-2.0/SignifReg/man/add1summary.Rd |only SignifReg-2.0/SignifReg/man/drop1SignifReg.Rd |only SignifReg-2.0/SignifReg/man/drop1summary.Rd |only 16 files changed, 534 insertions(+), 419 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine
learning life cycle, see <https://mlflow.org/>. This package supports installing
'MLflow', tracking experiments, creating and running projects, and saving and
serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 0.9.0.1 dated 2019-04-14 and 1.0.0 dated 2019-06-06
mlflow-0.9.0.1/mlflow/R/crate.R |only mlflow-0.9.0.1/mlflow/R/entities.R |only mlflow-0.9.0.1/mlflow/R/model-flavor.R |only mlflow-0.9.0.1/mlflow/R/project-snapshot.R |only mlflow-0.9.0.1/mlflow/R/tracking-fluent.R |only mlflow-0.9.0.1/mlflow/man/crate.Rd |only mlflow-0.9.0.1/mlflow/man/is_crate.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_active_run.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_cli.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_create_experiment.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_create_run.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_delete_experiment.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_delete_run.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_download_artifacts.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_get_experiment.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_get_experiment_by_name.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_get_run.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_list_artifacts.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_list_experiments.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_log_artifact.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_log_metric.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_log_param.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_restore_experiment.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_restore_run.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_set_tag.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_client_set_terminated.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_install.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_predict_flavor.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_predict_model.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_restore_snapshot.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_rfunc_predict.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_save_flavor.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_save_flavor.keras.engine.training.Model.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_snapshot.Rd |only mlflow-0.9.0.1/mlflow/man/mlflow_uninstall.Rd |only mlflow-0.9.0.1/mlflow/tests/testthat/test-tracking.R |only mlflow-1.0.0/mlflow/DESCRIPTION | 14 mlflow-1.0.0/mlflow/MD5 | 150 +-- mlflow-1.0.0/mlflow/NAMESPACE | 56 - mlflow-1.0.0/mlflow/R/cli.R | 42 - mlflow-1.0.0/mlflow/R/databricks-utils.R | 9 mlflow-1.0.0/mlflow/R/imports.R | 3 mlflow-1.0.0/mlflow/R/install.R | 49 - mlflow-1.0.0/mlflow/R/model-crate.R | 36 mlflow-1.0.0/mlflow/R/model-keras.R | 38 mlflow-1.0.0/mlflow/R/model-serve.R | 53 - mlflow-1.0.0/mlflow/R/model.R | 220 ++--- mlflow-1.0.0/mlflow/R/project-param.R | 23 mlflow-1.0.0/mlflow/R/project-run.R | 56 - mlflow-1.0.0/mlflow/R/project-source.R | 2 mlflow-1.0.0/mlflow/R/python.R | 41 - mlflow-1.0.0/mlflow/R/tracking-client.R | 390 ---------- mlflow-1.0.0/mlflow/R/tracking-experiments.R |only mlflow-1.0.0/mlflow/R/tracking-globals.R | 26 mlflow-1.0.0/mlflow/R/tracking-rest.R | 14 mlflow-1.0.0/mlflow/R/tracking-runs.R |only mlflow-1.0.0/mlflow/R/tracking-server.R | 2 mlflow-1.0.0/mlflow/R/tracking-ui.R | 12 mlflow-1.0.0/mlflow/R/tracking-utils.R | 128 ++- mlflow-1.0.0/mlflow/README.md | 2 mlflow-1.0.0/mlflow/man/install_mlflow.Rd |only mlflow-1.0.0/mlflow/man/mlflow_client.Rd | 4 mlflow-1.0.0/mlflow/man/mlflow_create_experiment.Rd | 17 mlflow-1.0.0/mlflow/man/mlflow_delete_experiment.Rd |only mlflow-1.0.0/mlflow/man/mlflow_delete_run.Rd |only mlflow-1.0.0/mlflow/man/mlflow_download_artifacts.Rd |only mlflow-1.0.0/mlflow/man/mlflow_end_run.Rd | 25 mlflow-1.0.0/mlflow/man/mlflow_get_experiment.Rd |only mlflow-1.0.0/mlflow/man/mlflow_get_metric_history.Rd |only mlflow-1.0.0/mlflow/man/mlflow_get_run.Rd |only mlflow-1.0.0/mlflow/man/mlflow_id.Rd |only mlflow-1.0.0/mlflow/man/mlflow_list_artifacts.Rd |only mlflow-1.0.0/mlflow/man/mlflow_list_experiments.Rd |only mlflow-1.0.0/mlflow/man/mlflow_list_run_infos.Rd |only mlflow-1.0.0/mlflow/man/mlflow_load_flavor.Rd | 13 mlflow-1.0.0/mlflow/man/mlflow_load_model.Rd | 28 mlflow-1.0.0/mlflow/man/mlflow_log_artifact.Rd | 45 - mlflow-1.0.0/mlflow/man/mlflow_log_batch.Rd |only mlflow-1.0.0/mlflow/man/mlflow_log_metric.Rd | 28 mlflow-1.0.0/mlflow/man/mlflow_log_model.Rd | 8 mlflow-1.0.0/mlflow/man/mlflow_log_param.Rd | 21 mlflow-1.0.0/mlflow/man/mlflow_param.Rd | 23 mlflow-1.0.0/mlflow/man/mlflow_predict.Rd |only mlflow-1.0.0/mlflow/man/mlflow_rename_experiment.Rd |only mlflow-1.0.0/mlflow/man/mlflow_restore_experiment.Rd |only mlflow-1.0.0/mlflow/man/mlflow_restore_run.Rd |only mlflow-1.0.0/mlflow/man/mlflow_rfunc_serve.Rd | 24 mlflow-1.0.0/mlflow/man/mlflow_run.Rd | 49 - mlflow-1.0.0/mlflow/man/mlflow_save_model.Rd | 24 mlflow-1.0.0/mlflow/man/mlflow_search_runs.Rd |only mlflow-1.0.0/mlflow/man/mlflow_set_experiment.Rd | 21 mlflow-1.0.0/mlflow/man/mlflow_set_tag.Rd | 19 mlflow-1.0.0/mlflow/man/mlflow_start_run.Rd | 35 mlflow-1.0.0/mlflow/man/mlflow_ui.Rd | 9 mlflow-1.0.0/mlflow/man/reexports.Rd | 3 mlflow-1.0.0/mlflow/man/uninstall_mlflow.Rd |only mlflow-1.0.0/mlflow/tests/testthat.R | 12 mlflow-1.0.0/mlflow/tests/testthat/helpers.R | 4 mlflow-1.0.0/mlflow/tests/testthat/test-client.R | 2 mlflow-1.0.0/mlflow/tests/testthat/test-model.R | 86 +- mlflow-1.0.0/mlflow/tests/testthat/test-python-install.R |only mlflow-1.0.0/mlflow/tests/testthat/test-rest.R |only mlflow-1.0.0/mlflow/tests/testthat/test-serve.R | 20 mlflow-1.0.0/mlflow/tests/testthat/test-tracking-experiments.R |only mlflow-1.0.0/mlflow/tests/testthat/test-tracking-runs.R |only mlflow-1.0.0/mlflow/tests/testthat/test_keras_model.R | 2 106 files changed, 871 insertions(+), 1017 deletions(-)
Title: Fuzzy Linear Regression
Description: Estimators for fuzzy linear regression. The functions estimate parameters of
fuzzy linear regression models with crisp or fuzzy independent variables (triangular
fuzzy numbers are supported). Implements multiple methods for parameter estimation and
algebraic operations with triangular fuzzy numbers. Includes functions for
summarising, printing and plotting the model fit. Calculates predictions from the
model and total error of fit.
Diamond (1988) <doi:10.1016/0020-0255(88)90047-3>,
Hung & Yang (2006) <doi:10.1016/j.fss.2006.08.004>,
Lee & Tanaka (1999) <doi:10.15807/jorsj.42.98>,
Nasrabadi, Nasrabadi & Nasrabady (2005) <doi:10.1016/j.amc.2004.02.008>,
Tanaka, Hayashi & Watada (1989) <doi:10.1016/0377-2217(89)90431-1>,
Zeng, Feng & Li (2017) <doi:10.1016/j.asoc.2016.09.029>.
Author: Pavel Skrabanek [aut, cph],
Natalia Martinkova [aut, cre, cph]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between fuzzyreg versions 0.5 dated 2019-02-07 and 0.5.1 dated 2019-06-06
DESCRIPTION | 8 MD5 | 66 ++--- NAMESPACE | 48 ++-- NEWS | 5 R/flar.R | 148 ++++++------- R/fuzzylm.R | 2 R/plrls.R | 6 build/vignette.rds |binary inst/CITATION | 17 - inst/doc/GettingStarted.R | 426 +++++++++++++++++++------------------- inst/doc/GettingStarted.pdf |binary man/GOF.Rd | 82 +++---- man/TEF.Rd | 96 ++++---- man/bats.Rd | 82 +++---- man/coef.fuzzylm.Rd | 66 ++--- man/dom.Rd | 52 ++-- man/flar.Rd | 94 ++++---- man/fls.Rd | 94 ++++---- man/fuzzify.Rd | 110 ++++----- man/fuzzydat.Rd | 78 +++--- man/fuzzylm.Rd | 162 +++++++------- man/moflr.Rd | 118 +++++----- man/oplr.Rd | 106 ++++----- man/plot.fuzzylm.Rd | 104 ++++----- man/plr.Rd | 100 ++++---- man/plrls.Rd | 118 +++++----- man/predict.fuzzylm.Rd | 60 ++--- man/print.fuzzylm.Rd | 48 ++-- man/print.summary.fuzzylm.Rd | 50 ++-- man/prodFuzzy.Rd | 54 ++-- man/prodSfuzzy.Rd | 62 ++--- man/sumFuzzy.Rd | 54 ++-- man/summary.fuzzylm.Rd | 60 ++--- tests/testthat/test_performance.R | 6 34 files changed, 1294 insertions(+), 1288 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: Duncan Temple Lang and the CRAN Team (including Tomas Kalibera)
Maintainer: ORPHANED
Diff between XML versions 3.98-1.19 dated 2019-03-06 and 3.98-1.20 dated 2019-06-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/saveXML.Rd | 2 +- man/xmlSerializeHook.Rd | 6 ++++-- 4 files changed, 11 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-25 1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-24 0.2.4
2019-05-23 0.2.3
2019-02-18 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-24 1.1
2013-05-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-31 2.0.2
2019-04-16 2.0.1
2019-01-09 2.0.0
2014-10-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-06 1.0.0