Title: Species Trait Data from Around the Web
Description: Species trait data from many different sources, including
sequence data from 'NCBI', plant trait data from 'BETYdb', plant data
from the USDA plants database, data from 'EOL' 'Traitbank',
Coral traits data (<https://coraltraits.org>), 'Birdlife' International,
and more.
Author: Scott Chamberlain [aut, cre],
Zachary Foster [aut],
Ignasi Bartomeus [aut],
David LeBauer [aut],
Chris Black [aut],
David Harris [aut],
Rupert Collins [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between traits versions 0.3.0 dated 2017-09-22 and 0.4.0 dated 2019-06-07
traits-0.3.0/traits/inst/doc/traits_intro.Rmd |only traits-0.3.0/traits/inst/doc/traits_intro.html |only traits-0.3.0/traits/inst/vign/traits_intro.Rmd |only traits-0.3.0/traits/inst/vign/traits_intro.md |only traits-0.3.0/traits/vignettes/traits_intro.Rmd |only traits-0.4.0/traits/DESCRIPTION | 25 + traits-0.4.0/traits/LICENSE | 2 traits-0.4.0/traits/MD5 | 64 ++-- traits-0.4.0/traits/NAMESPACE | 5 traits-0.4.0/traits/NEWS.md | 22 + traits-0.4.0/traits/R/betydb.R | 150 +++++++++-- traits-0.4.0/traits/R/coral.R | 2 traits-0.4.0/traits/R/ncbi_byid.R | 37 ++ traits-0.4.0/traits/R/ncbi_byname.R | 5 traits-0.4.0/traits/R/ncbi_searcher.R | 51 ++- traits-0.4.0/traits/R/traitbank.R | 91 +++--- traits-0.4.0/traits/R/traits-package.r | 18 - traits-0.4.0/traits/R/zzz.R | 15 + traits-0.4.0/traits/README.md | 269 +++++++++++++------- traits-0.4.0/traits/build/vignette.rds |binary traits-0.4.0/traits/inst/doc/traits.Rmd |only traits-0.4.0/traits/inst/doc/traits.html |only traits-0.4.0/traits/inst/vign/traits.Rmd |only traits-0.4.0/traits/inst/vign/traits.md |only traits-0.4.0/traits/man/betydb.Rd | 26 + traits-0.4.0/traits/man/betydb_query.Rd | 7 traits-0.4.0/traits/man/birdlife_habitat.Rd | 1 traits-0.4.0/traits/man/birdlife_threats.Rd | 1 traits-0.4.0/traits/man/coral.Rd | 10 traits-0.4.0/traits/man/ncbi_byid.Rd | 21 + traits-0.4.0/traits/man/ncbi_byname.Rd | 9 traits-0.4.0/traits/man/ncbi_searcher.Rd | 46 +-- traits-0.4.0/traits/man/traitbank.Rd | 60 ++-- traits-0.4.0/traits/man/traits-package.Rd | 20 - traits-0.4.0/traits/tests/testthat/helper-traits.R | 12 traits-0.4.0/traits/tests/testthat/test-betydb.R | 67 +++- traits-0.4.0/traits/tests/testthat/test-traitbank.R | 49 +-- traits-0.4.0/traits/vignettes/traits.Rmd |only 38 files changed, 718 insertions(+), 367 deletions(-)
Title: Queries and Extracts Images from Extensible Neuroimaging Archive
Toolkit Public/Private Datasets
Description: Allows communication with Extensible Neuroimaging Archive Toolkit <https://www.xnat.org>.
'Rxnat' is using the 'XNAT' REST API to perform data queries and download images.
Author: Adi Gherman [aut, cre]
Maintainer: Adi Gherman <adig@jhu.edu>
Diff between Rxnat versions 1.0.5 dated 2019-06-05 and 1.0.6 dated 2019-06-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/rxnat.html | 4 ++-- tests/testthat/test-xnat-api.R | 1 + 4 files changed, 9 insertions(+), 8 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 0.8.5 dated 2019-06-05 and 0.9.0 dated 2019-06-07
DESCRIPTION | 10 +- MD5 | 29 +++++--- NAMESPACE | 15 ++++ NEWS.md | 24 +++++++ R/coxph.R | 7 +- R/jsBasicGadget.R | 25 +++++++ R/jsRepeatedGadget.R | 26 +++++++ R/jsSurveyGadget.R | 53 +++++++++++++++ R/kaplan.R | 112 ++++++++++++++++++++++++++++++--- R/roc.R |only R/timeroc.R | 82 ++++++++++++++++-------- inst/doc/jsmodule.html | 4 - man/ROC_table.Rd |only man/kaplanModule.Rd | 5 - man/optionUI.Rd |only man/reclassificationJS.Rd |only man/rocModule.Rd |only man/rocUI.Rd |only tests/testthat/test-reclassification.R |only 19 files changed, 332 insertions(+), 60 deletions(-)
Title: Access Small ForestGEO Datasets For Examples
Description: Access small example datasets from Luquillo, a
ForestGEO site in Puerto Rico
(<https://forestgeo.si.edu/sites/north-america/luquillo>).
Author: Mauro Lepore [aut, ctr, cre] (<https://orcid.org/0000-0002-1986-7988>),
Jess Zimmerman [dtc],
CTFS-ForestGEO [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between fgeo.x versions 1.1.3 dated 2019-05-09 and 1.1.4 dated 2019-06-07
DESCRIPTION | 10 MD5 | 64 NAMESPACE | 10 NEWS.md | 40 R/data.R | 54 R/download_data.R | 35 R/example_path.R | 54 R/fgeo.x-package.R | 4 README.md | 440 inst/WORDLIST | 34 inst/extdata/csv/csv1.csv | 8 inst/extdata/csv/csv2.csv | 8 inst/extdata/mixed_files/csv_01.csv | 12 inst/extdata/mixed_files/csv_02.csv | 12 inst/extdata/taxa.csv | 328 inst/extdata/tsv/tsv1.tsv | 8 inst/extdata/tsv/tsv2.tsv | 8 inst/extdata/vft_4quad.csv | 1002 - inst/extdata/view/taxa.csv | 328 inst/extdata/view/vft_4quad.csv | 1002 - inst/extdata/weird/tsv1.csv | 8 inst/extdata/weird/tsv2.csv | 8 man/datasets.Rd | 80 man/download_data.Rd | 101 man/example_path.Rd | 64 man/fgeo.x-package.Rd | 62 tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/ref-datasets |23630 ++++++++++++++++++------------------ tests/testthat/ref-example_path | 6 tests/testthat/test-data.R | 34 tests/testthat/test-download_data.R | 54 tests/testthat/test-example_path.R | 16 33 files changed, 13763 insertions(+), 13775 deletions(-)
Title: A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Screening Process
Description: Data screening is an important first step of any statistical
analysis. dataMaid auto generates a customizable data report with a thorough
summary of the checks and the results that a human can use to identify possible
errors. It provides an extendable suite of test for common potential
errors in a dataset.
Author: Anne Helby Petersen [aut],
Claus Thorn Ekstrøm [aut, cre]
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Diff between dataMaid versions 1.2.0 dated 2018-10-03 and 1.3.0 dated 2019-06-07
DESCRIPTION | 15 MD5 | 22 R/aggregateForHistogram.R | 6 R/makeDataReport.R | 28 R/standardVisual.R | 4 build/vignette.rds |binary inst/doc/extending_dataMaid.html | 1252 +++++++++++++++++++++++++-------------- man/clean.Rd | 15 man/makeDataReport.Rd | 21 man/setSummaries.Rd | 6 man/setVisuals.Rd | 4 man/summarize.Rd | 3 12 files changed, 904 insertions(+), 472 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-18 0.3.6
Title: Lumped/Semi-Distributed Hydrological Model for Education
Purposes
Description: The model, developed at the Vienna University of Technology, is a lumped conceptual rainfall-runoff model, following the structure of the HBV model.
The model can also be run in a semi-distributed fashion.
The model runs on a daily or shorter time step and consists of a snow routine, a soil moisture routine and a flow routing routine.
See Parajka, J., R. Merz, G. Bloeschl (2007) <DOI:10.1002/hyp.6253> Uncertainty and multiple objective calibration in regional water balance modelling: case study in 320 Austrian catchments, Hydrological Processes, 21, 435-446.
Author: Alberto Viglione [aut, cre],
Juraj Parajka [aut]
Maintainer: Alberto Viglione <viglione@hydro.tuwien.ac.at>
Diff between TUWmodel versions 1.0-1 dated 2018-06-27 and 1.0-2 dated 2019-06-07
TUWmodel-1.0-1/TUWmodel/src/TUWmodel_init.c |only TUWmodel-1.0-2/TUWmodel/DESCRIPTION | 12 +++++++----- TUWmodel-1.0-2/TUWmodel/MD5 | 8 ++++---- TUWmodel-1.0-2/TUWmodel/NAMESPACE | 5 +++-- TUWmodel-1.0-2/TUWmodel/R/TUWmodel.R | 7 ------- TUWmodel-1.0-2/TUWmodel/src/rinit.c |only 6 files changed, 14 insertions(+), 18 deletions(-)
Title: Positron Emission Tomography Time-Activity Curve Analysis
Description: To facilitate the analysis of positron emission tomography (PET)
time activity curve (TAC) data, and to encourage open science and
replicability, this package supports data loading and analysis of multiple
TAC file formats. Functions are available to analyze loaded TAC data for
individual participants or in batches. Major functionality includes weighted
TAC merging by region of interest (ROI), calculating models including
standardized uptake value ratio (SUVR) and distribution volume ratio (DVR,
Logan et al. 1996 <doi:10.1097/00004647-199609000-00008>), basic plotting
functions and calculation of cut-off values (Aizenstein et al. 2008
<doi:10.1001/archneur.65.11.1509>). Please see the walkthrough vignette for
a detailed overview of 'tacmagic' functions.
Author: Eric Brown [aut, cre] (<https://orcid.org/0000-0002-1575-2606>),
Ariel Graff-Guerrero [dgs],
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>, Jon Clayden
reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/280>),
Brandon Hurr [rev] (<https://orcid.org/0000-0003-2576-4544>, Brandon
Hurr reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/280>)
Maintainer: Eric Brown <eb@ericebrown.com>
Diff between tacmagic versions 0.2.1 dated 2019-03-06 and 0.3.0 dated 2019-06-07
DESCRIPTION | 8 MD5 | 44 ++-- NAMESPACE | 5 NEWS.md | 18 + R/SUV.R |only R/batch_models.R | 3 R/batches.R | 32 +++ R/loading.R | 1 R/loading_utilities.R | 3 R/units.R |only build/vignette.rds |binary inst/doc/walkthrough.R | 17 + inst/doc/walkthrough.Rmd | 53 ++++- inst/doc/walkthrough.html | 432 ++++++++++++++++++++++-------------------- man/batch_load.Rd | 10 man/change_units.Rd |only man/suv.Rd |only man/tac_suv.Rd |only tests/figs |only tests/testthat/test_batches.R | 53 ++++- tests/testthat/test_logan.R | 13 - tests/testthat/test_plot.R | 33 --- tests/testthat/test_suv.R |only tests/testthat/test_units.R |only vignettes/walkthrough.Rmd | 53 ++++- 25 files changed, 504 insertions(+), 274 deletions(-)
Title: Structural Equation Modeling Tables
Description: For confirmatory factor analysis ('CFA') and structural equation
models ('SEM') estimated with the 'lavaan' package,
this package provides functions to create model summary tables and model
comparison tables for hypothesis testing. Tables can be produced in
'LaTeX', 'HTML', or comma separated variables ('CSV').
Author: Paul Johnson [aut, cre],
Benjamin Kite [aut]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between semTable versions 1.3 dated 2019-05-20 and 1.6 dated 2019-06-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/semTable.R | 50 +++++++++++++++++++++++++++++++------------------- inst/doc/semtable.pdf |binary man/semTable.Rd | 24 +++++++++++++----------- 5 files changed, 52 insertions(+), 38 deletions(-)
Title: Interface to the 'Orcid.org' API
Description: Client for the 'Orcid.org' API (<https://orcid.org/>).
Functions included for searching for people, searching by 'DOI',
and searching by 'Orcid' 'ID'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rorcid versions 0.4.0 dated 2018-02-11 and 0.5.0 dated 2019-06-07
rorcid-0.4.0/rorcid/inst/doc/rorcid_vignette.Rmd |only rorcid-0.4.0/rorcid/inst/doc/rorcid_vignette.html |only rorcid-0.4.0/rorcid/inst/vign/rorcid_vignette.Rmd |only rorcid-0.4.0/rorcid/inst/vign/rorcid_vignette.md |only rorcid-0.4.0/rorcid/vignettes/rorcid_vignette.Rmd |only rorcid-0.5.0/rorcid/DESCRIPTION | 36 +- rorcid-0.5.0/rorcid/LICENSE | 2 rorcid-0.5.0/rorcid/MD5 | 111 ++++--- rorcid-0.5.0/rorcid/NAMESPACE | 10 rorcid-0.5.0/rorcid/NEWS.md | 28 ++ rorcid-0.5.0/rorcid/R/auth.R | 66 ++-- rorcid-0.5.0/rorcid/R/identifiers.R | 5 rorcid-0.5.0/rorcid/R/orcid.r | 4 rorcid-0.5.0/rorcid/R/orcid_bio.R | 16 - rorcid-0.5.0/rorcid/R/orcid_citations.R |only rorcid-0.5.0/rorcid/R/orcid_distinctions.R |only rorcid-0.5.0/rorcid/R/orcid_educations.R | 10 rorcid-0.5.0/rorcid/R/orcid_employments.R | 10 rorcid-0.5.0/rorcid/R/orcid_fundings.R | 9 rorcid-0.5.0/rorcid/R/orcid_invited_positions.R |only rorcid-0.5.0/rorcid/R/orcid_memberships.R |only rorcid-0.5.0/rorcid/R/orcid_peer_reviews.R | 24 - rorcid-0.5.0/rorcid/R/orcid_qualifications.R |only rorcid-0.5.0/rorcid/R/orcid_research_resources.R |only rorcid-0.5.0/rorcid/R/orcid_search.R |only rorcid-0.5.0/rorcid/R/orcid_services.R |only rorcid-0.5.0/rorcid/R/orcid_works.R | 79 ++++- rorcid-0.5.0/rorcid/R/rorcid-package.R | 75 +++-- rorcid-0.5.0/rorcid/R/works.R | 6 rorcid-0.5.0/rorcid/R/zzz.R | 47 ++- rorcid-0.5.0/rorcid/README.md | 250 +++++++++++------- rorcid-0.5.0/rorcid/build/vignette.rds |binary rorcid-0.5.0/rorcid/data/issn_title.rda |only rorcid-0.5.0/rorcid/inst/doc/rorcid.Rmd |only rorcid-0.5.0/rorcid/inst/doc/rorcid.html |only rorcid-0.5.0/rorcid/inst/ignore/issn_title_collect.R |only rorcid-0.5.0/rorcid/inst/vign/rorcid.Rmd |only rorcid-0.5.0/rorcid/inst/vign/rorcid.md |only rorcid-0.5.0/rorcid/man/fields.Rd | 4 rorcid-0.5.0/rorcid/man/issn_title.Rd |only rorcid-0.5.0/rorcid/man/orcid.Rd | 4 rorcid-0.5.0/rorcid/man/orcid_activities.Rd | 4 rorcid-0.5.0/rorcid/man/orcid_address.Rd | 7 rorcid-0.5.0/rorcid/man/orcid_auth.Rd | 18 + rorcid-0.5.0/rorcid/man/orcid_bio.Rd | 20 - rorcid-0.5.0/rorcid/man/orcid_citations.Rd |only rorcid-0.5.0/rorcid/man/orcid_distinctions.Rd |only rorcid-0.5.0/rorcid/man/orcid_doi.Rd | 3 rorcid-0.5.0/rorcid/man/orcid_educations.Rd | 7 rorcid-0.5.0/rorcid/man/orcid_email.Rd | 4 rorcid-0.5.0/rorcid/man/orcid_employments.Rd | 7 rorcid-0.5.0/rorcid/man/orcid_external_identifiers.Rd | 7 rorcid-0.5.0/rorcid/man/orcid_fundings.Rd | 7 rorcid-0.5.0/rorcid/man/orcid_invited_positions.Rd |only rorcid-0.5.0/rorcid/man/orcid_keywords.Rd | 10 rorcid-0.5.0/rorcid/man/orcid_memberships.Rd |only rorcid-0.5.0/rorcid/man/orcid_other_names.Rd | 10 rorcid-0.5.0/rorcid/man/orcid_peer_reviews.Rd | 21 + rorcid-0.5.0/rorcid/man/orcid_person.Rd | 4 rorcid-0.5.0/rorcid/man/orcid_qualifications.Rd |only rorcid-0.5.0/rorcid/man/orcid_research_resources.Rd |only rorcid-0.5.0/rorcid/man/orcid_researcher_urls.Rd | 11 rorcid-0.5.0/rorcid/man/orcid_search.Rd |only rorcid-0.5.0/rorcid/man/orcid_services.Rd |only rorcid-0.5.0/rorcid/man/orcid_works.Rd | 36 +- rorcid-0.5.0/rorcid/man/rorcid-package.Rd | 18 - rorcid-0.5.0/rorcid/tests/testthat/test-as.orcid.R | 2 rorcid-0.5.0/rorcid/tests/testthat/test-orcid.R | 5 rorcid-0.5.0/rorcid/tests/testthat/test-orcid_id.R | 2 rorcid-0.5.0/rorcid/tests/testthat/test-works.R | 2 rorcid-0.5.0/rorcid/vignettes/rorcid.Rmd |only 71 files changed, 613 insertions(+), 388 deletions(-)
Title: Regional Economic Analysis Toolbox
Description: Collection of models and analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and convergence, regional specialization as well as accessibility and spatial interaction models.
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Diff between REAT versions 3.0.0 dated 2019-03-04 and 3.0.1 dated 2019-06-07
REAT-3.0.0/REAT/data/FK2014_EGK.rda |only REAT-3.0.0/REAT/man/FK2014_EGK.Rd |only REAT-3.0.1/REAT/DESCRIPTION | 8 +++--- REAT-3.0.1/REAT/MD5 | 44 ++++++++++++++++++------------------ REAT-3.0.1/REAT/R/gifpro.tbs.R | 33 ++++++++++++++++++--------- REAT-3.0.1/REAT/R/growth.R | 24 ++++++++++++++----- REAT-3.0.1/REAT/R/howard.xcl2.R | 2 - REAT-3.0.1/REAT/R/locq.growth.R | 27 +++++++++++++--------- REAT-3.0.1/REAT/R/portfolio.R | 5 ++-- REAT-3.0.1/REAT/R/shift.R | 4 +-- REAT-3.0.1/REAT/R/shift.growth.R | 12 ++++----- REAT-3.0.1/REAT/R/shiftd.R | 4 +-- REAT-3.0.1/REAT/R/shiftid.R | 4 +-- REAT-3.0.1/REAT/data/FK2014_EGC.rda |only REAT-3.0.1/REAT/man/FK2014_EGC.Rd |only REAT-3.0.1/REAT/man/Goettingen.Rd | 2 - REAT-3.0.1/REAT/man/ellison.a2.Rd | 12 ++++----- REAT-3.0.1/REAT/man/ellison.c.Rd | 7 +++-- REAT-3.0.1/REAT/man/ellison.c2.Rd | 7 +++-- REAT-3.0.1/REAT/man/gifpro.tbs.Rd | 7 +++++ REAT-3.0.1/REAT/man/growth.Rd | 9 ++++++- REAT-3.0.1/REAT/man/howard.xcl2.Rd | 6 ++-- REAT-3.0.1/REAT/man/locq.growth.Rd | 10 ++++++-- REAT-3.0.1/REAT/man/portfolio.Rd | 5 +++- REAT-3.0.1/REAT/man/shift.growth.Rd | 6 ++++ 25 files changed, 147 insertions(+), 91 deletions(-)
Title: Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 2.2.3 dated 2019-04-28 and 2.2.4 dated 2019-06-07
ChangeLog | 11 DESCRIPTION | 8 MD5 | 24 - R/modelSelection.R | 29 +- inst/doc/mombf.pdf |binary man/modelSelection.Rd | 4 src/RcppExports.cpp | 6 src/cstat.cpp | 77 +++-- src/cstat.h | 3 src/modelSel.cpp | 673 ++++++++++++++++++++++++++++++++++++------------- src/modelSel.h | 27 + src/modselFunction.cpp | 104 ++++++- src/modselFunction.h | 5 13 files changed, 714 insertions(+), 257 deletions(-)
Title: Render Markdown with the C Library 'Sundown'
Description: Provides R bindings to the 'Sundown' Markdown rendering library
(<https://github.com/vmg/sundown>). Markdown is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
<http://en.wikipedia.org/wiki/Markdown> for more information about Markdown.
Author: JJ Allaire [aut],
Jeffrey Horner [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
Andrzej Oles [ctb],
Vicent Marti [aut, cph] (The Sundown library),
Natacha Porte [aut, cph] (The Sundown library),
RStudio [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 0.9 dated 2018-12-06 and 1.0 dated 2019-06-07
DESCRIPTION | 17 +++++++++-------- MD5 | 12 ++++++------ NEWS | 11 +++++++++++ R/renderMarkdown.R | 23 ++++++++--------------- build/vignette.rds |binary man/markdownToHTML.Rd | 8 ++++---- man/renderMarkdown.Rd | 4 ++-- 7 files changed, 40 insertions(+), 35 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 0.8.1 dated 2019-03-07 and 0.8.2 dated 2019-06-07
DESCRIPTION | 8 +++--- MD5 | 12 ++++----- NEWS.md | 6 ++++ R/CreateTableOneJS.R | 31 +++++++++++++++++-------- R/svyCreateTableOneJS.R | 32 +++++++++++++++++--------- build/vignette.rds |binary inst/doc/jstable.html | 59 +++++++++++++++++++++++++----------------------- 7 files changed, 89 insertions(+), 59 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modality diagnosis for Gaussian
mixtures. For an overview see package?fpc.
Author: Christian Hennig <christian.hennig@unibo.it>
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-1 dated 2019-05-21 and 2.2-2 dated 2019-06-07
fpc-2.2-1/fpc/tests/fpctests_notallin.Rout |only fpc-2.2-2/fpc/DESCRIPTION | 8 ++++---- fpc-2.2-2/fpc/MD5 | 12 ++++++------ fpc-2.2-2/fpc/R/addclustermethods.R | 4 ++-- fpc-2.2-2/fpc/R/lcmixed.R | 2 +- fpc-2.2-2/fpc/R/mergenormals.R | 12 ++++++------ fpc-2.2-2/fpc/tests/Examples/fpc-Ex.Rout.save | 18 +++++++++--------- fpc-2.2-2/fpc/tests/fpctests_notallin.Rout.save |only 8 files changed, 28 insertions(+), 28 deletions(-)
Title: Fingertips Data for Public Health
Description: Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.
Author: Sebastian Fox [aut, cre],
Julian Flowers [aut, ctb],
Simon Thelwall [ctb] (<https://orcid.org/0000-0002-0434-2724>),
Duncan Gormansway [ctb],
Carl Ganz [ctb],
David Whiting [ctb],
Crown Copyright 2018 [cph]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipsR versions 0.2.4 dated 2019-05-19 and 0.2.6 dated 2019-06-07
DESCRIPTION | 6 - MD5 | 26 +++---- NAMESPACE | 1 NEWS.md | 8 ++ R/area_types.R | 20 +++--- R/fingertipsR.R | 2 R/indicators.R | 3 README.md | 100 +++++++++++++++++++----------- inst/doc/lifeExpectancy.html | 116 +++++++++++++++-------------------- inst/doc/selectIndicatorsRedRed.html | 48 ++++++-------- man/fingertipsR.Rd | 2 man/nearest_neighbours.Rd | 4 - tests/testthat/test-area_types.R | 4 - tests/testthat/test-deprivation.R | 9 +- 14 files changed, 193 insertions(+), 156 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-22 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-03 0.1-2
Title: Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Description: Downloads, imports, and tidies time series data from the
Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre],
Zoe Meers [aut],
Jaron Lee [aut],
David Diviny [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readabs versions 0.3.1 dated 2019-05-22 and 0.4.0 dated 2019-06-07
readabs-0.3.1/readabs/tests/testthat/data |only readabs-0.4.0/readabs/DESCRIPTION | 18 - readabs-0.4.0/readabs/MD5 | 42 +- readabs-0.4.0/readabs/NAMESPACE | 8 readabs-0.4.0/readabs/NEWS.md | 13 readabs-0.4.0/readabs/R/download_abs.R | 2 readabs-0.4.0/readabs/R/form_abs_tsd_url.R |only readabs-0.4.0/readabs/R/read_abs.R | 99 ++++--- readabs-0.4.0/readabs/R/read_abs_data.R | 5 readabs-0.4.0/readabs/R/read_abs_local.R | 41 ++ readabs-0.4.0/readabs/R/read_cpi.R |only readabs-0.4.0/readabs/R/separate_series.R |only readabs-0.4.0/readabs/README.md | 43 ++- readabs-0.4.0/readabs/inst/doc/readabs_vignette.R | 40 ++ readabs-0.4.0/readabs/inst/doc/readabs_vignette.Rmd | 89 ++++-- readabs-0.4.0/readabs/inst/doc/readabs_vignette.html | 268 +++++++++++-------- readabs-0.4.0/readabs/man/get_abs.Rd | 7 readabs-0.4.0/readabs/man/read_abs.Rd | 20 + readabs-0.4.0/readabs/man/read_abs_data.Rd | 2 readabs-0.4.0/readabs/man/read_abs_local.Rd | 16 - readabs-0.4.0/readabs/man/read_cpi.Rd |only readabs-0.4.0/readabs/man/separate_series.Rd |only readabs-0.4.0/readabs/tests/testdata/empty |only readabs-0.4.0/readabs/tests/testthat/test_readabs.R | 122 +++++++- readabs-0.4.0/readabs/vignettes/readabs_vignette.Rmd | 89 ++++-- 25 files changed, 648 insertions(+), 276 deletions(-)
Title: Methods for Fitting Network Time Series Models
Description: Simulation of, and fitting models for, Generalised Network Autoregressive (GNAR) time series models which take account of network structure. Such models are described in Knight et al. (2016), see <arXiv:1603.03221>.
Author: Kathryn Leeming [aut],
Guy Nason [aut],
Matt Nunes [aut, cre],
Marina Knight [ctb]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between GNAR versions 0.2.9 dated 2018-11-02 and 0.3.6 dated 2019-06-07
GNAR-0.2.9/GNAR/R/GNARpredict.R |only GNAR-0.2.9/GNAR/R/GNARtoWMat.R |only GNAR-0.2.9/GNAR/R/asGNARnet.R |only GNAR-0.2.9/GNAR/R/coefGNARfit.R |only GNAR-0.2.9/GNAR/R/fittedGNARfit.R |only GNAR-0.2.9/GNAR/R/isGNARfit.R |only GNAR-0.2.9/GNAR/R/isGNARnet.R |only GNAR-0.2.9/GNAR/R/lmToBIC.R |only GNAR-0.2.9/GNAR/R/narow.R |only GNAR-0.2.9/GNAR/R/plotGNARnet.R |only GNAR-0.2.9/GNAR/R/printGNARfit.R |only GNAR-0.2.9/GNAR/R/printGNARnet.R |only GNAR-0.2.9/GNAR/R/residualsGNARfit.R |only GNAR-0.2.9/GNAR/R/summaryGNARfit.R |only GNAR-0.2.9/GNAR/R/summaryGNARnet.R |only GNAR-0.2.9/GNAR/man/GNARpredict.Rd |only GNAR-0.2.9/GNAR/man/GNARtoWMat.Rd |only GNAR-0.2.9/GNAR/man/coefGNARfit.Rd |only GNAR-0.2.9/GNAR/man/fittedGNARfit.Rd |only GNAR-0.2.9/GNAR/man/fiveNet.Rd |only GNAR-0.2.9/GNAR/man/fiveVTS.Rd |only GNAR-0.2.9/GNAR/man/gdp.Rd |only GNAR-0.2.9/GNAR/man/isGNARfit.Rd |only GNAR-0.2.9/GNAR/man/isGNARnet.Rd |only GNAR-0.2.9/GNAR/man/lmToBIC.Rd |only GNAR-0.2.9/GNAR/man/narow.Rd |only GNAR-0.2.9/GNAR/man/plotGNARnet.Rd |only GNAR-0.2.9/GNAR/man/printGNARfit.Rd |only GNAR-0.2.9/GNAR/man/printGNARnet.Rd |only GNAR-0.2.9/GNAR/man/residualsGNARfit.Rd |only GNAR-0.2.9/GNAR/man/seednos.Rd |only GNAR-0.2.9/GNAR/man/summaryGNARfit.Rd |only GNAR-0.2.9/GNAR/man/summaryGNARnet.Rd |only GNAR-0.3.6/GNAR/DESCRIPTION | 8 +- GNAR-0.3.6/GNAR/MD5 | 119 ++++++++++++++++--------------- GNAR-0.3.6/GNAR/NAMESPACE | 21 ++++- GNAR-0.3.6/GNAR/R/AIC.GNARfit.R |only GNAR-0.3.6/GNAR/R/BIC.GNARfit.R |only GNAR-0.3.6/GNAR/R/GNARdesign.R | 31 ++++---- GNAR-0.3.6/GNAR/R/GNARfit.R | 2 GNAR-0.3.6/GNAR/R/GNARsim.R | 3 GNAR-0.3.6/GNAR/R/GNARtoigraph.R | 2 GNAR-0.3.6/GNAR/R/NofNeighbours.R | 2 GNAR-0.3.6/GNAR/R/as.GNARnet.R |only GNAR-0.3.6/GNAR/R/as.matrix.GNARnet.R |only GNAR-0.3.6/GNAR/R/coef.GNARfit.R |only GNAR-0.3.6/GNAR/R/fitted.GNARfit.R |only GNAR-0.3.6/GNAR/R/is.GNARfit.R |only GNAR-0.3.6/GNAR/R/is.GNARnet.R |only GNAR-0.3.6/GNAR/R/logLik.GNARfit.R |only GNAR-0.3.6/GNAR/R/na.row.R |only GNAR-0.3.6/GNAR/R/nobs.GNARfit.R |only GNAR-0.3.6/GNAR/R/plot.GNARnet.R |only GNAR-0.3.6/GNAR/R/predict.GNARfit.R |only GNAR-0.3.6/GNAR/R/print.GNARfit.R |only GNAR-0.3.6/GNAR/R/print.GNARnet.R |only GNAR-0.3.6/GNAR/R/residToMat.R | 2 GNAR-0.3.6/GNAR/R/residuals.GNARfit.R |only GNAR-0.3.6/GNAR/R/simulate.GNARfit.R |only GNAR-0.3.6/GNAR/R/summary.GNARfit.R |only GNAR-0.3.6/GNAR/R/summary.GNARnet.R |only GNAR-0.3.6/GNAR/R/vcov.GNARfit.R |only GNAR-0.3.6/GNAR/data/gdp.rda |binary GNAR-0.3.6/GNAR/inst/CHANGES | 6 + GNAR-0.3.6/GNAR/man/AIC.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/BIC.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/GNAR.Rd | 2 GNAR-0.3.6/GNAR/man/GNARdesign.Rd | 1 GNAR-0.3.6/GNAR/man/GNARfit.Rd | 3 GNAR-0.3.6/GNAR/man/GNARsim.Rd | 1 GNAR-0.3.6/GNAR/man/GNARtoigraph.Rd | 1 GNAR-0.3.6/GNAR/man/NofNeighbours.Rd | 1 GNAR-0.3.6/GNAR/man/as.matrix.GNARnet.Rd |only GNAR-0.3.6/GNAR/man/coef.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/fitted.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/fiveNode.Rd | 7 + GNAR-0.3.6/GNAR/man/gdpVTS.Rd | 3 GNAR-0.3.6/GNAR/man/igraphtoGNAR.Rd | 1 GNAR-0.3.6/GNAR/man/is.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/is.GNARnet.Rd |only GNAR-0.3.6/GNAR/man/logLik.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/matrixtoGNAR.Rd | 3 GNAR-0.3.6/GNAR/man/na.row.Rd |only GNAR-0.3.6/GNAR/man/nobs.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/plot.GNARnet.Rd |only GNAR-0.3.6/GNAR/man/predict.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/print.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/print.GNARnet.Rd |only GNAR-0.3.6/GNAR/man/residToMat.Rd | 9 +- GNAR-0.3.6/GNAR/man/residuals.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/seed.nos.Rd |only GNAR-0.3.6/GNAR/man/simulate.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/summary.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/summary.GNARnet.Rd |only GNAR-0.3.6/GNAR/man/vcov.GNARfit.Rd |only GNAR-0.3.6/GNAR/man/vswind.Rd | 3 GNAR-0.3.6/GNAR/man/windnetplot.Rd | 3 97 files changed, 127 insertions(+), 107 deletions(-)
Title: ExifTool Functionality from R
Description: Reads, writes, and edits EXIF and other file metadata
using ExifTool <http://www.sno.phy.queensu.ca/~phil/exiftool/>,
returning read results as a data frame. ExifTool supports many
different metadata formats including EXIF, GPS, IPTC, XMP, JFIF,
GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, as
well as the maker notes of many digital cameras by Canon, Casio,
DJI, FLIR, FujiFilm, GE, GoPro, HP, JVC/Victor, Kodak, Leaf,
Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson,
Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung,
Sanyo, Sigma/Foveon and Sony.
Author: Joshua O'Brien [aut, cre]
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>
Diff between exiftoolr versions 0.1.1 dated 2018-09-12 and 0.1.2 dated 2019-06-07
DESCRIPTION | 10 ++--- MD5 | 12 +++--- R/exif_read.R | 31 ++++++++-------- R/utils.R | 88 ++++++++++++++++++++++++++++-------------------- man/exif_call.Rd | 29 ++++++++------- man/exif_read.Rd | 2 - man/install_exiftool.Rd | 8 +++- 7 files changed, 102 insertions(+), 78 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut],
Jonathan Keane [aut],
Gordon Shotwell [aut],
Mike Malecki [aut, cre]
Maintainer: Mike Malecki <mike@crunch.io>
Diff between crunch versions 1.26.0 dated 2019-04-02 and 1.26.1 dated 2019-06-07
crunch-1.26.0/crunch/tests/testthat/app.crunch.io/api/datasets/mr_from_delim/variables-d118fa-4b6023-PATCH.json |only crunch-1.26.0/crunch/tests/testthat/test-align-alias.R |only crunch-1.26.0/crunch/vignettes/crunch/5/api/datasets/1468ef/variables-d118fa-9f7554-PATCH.204 |only crunch-1.26.1/crunch/DESCRIPTION | 22 crunch-1.26.1/crunch/MD5 | 444 +++++----- crunch-1.26.1/crunch/R/AllClasses.R | 8 crunch-1.26.1/crunch/R/R-to-variable.R | 9 crunch-1.26.1/crunch/R/api.R | 28 crunch-1.26.1/crunch/R/archive-and-publish.R | 12 crunch-1.26.1/crunch/R/as-data-frame.R | 8 crunch-1.26.1/crunch/R/auth.R | 2 crunch-1.26.1/crunch/R/case-variables.R | 33 crunch-1.26.1/crunch/R/categories.R | 44 crunch-1.26.1/crunch/R/change-category-id.R | 3 crunch-1.26.1/crunch/R/combine-categories.R | 19 crunch-1.26.1/crunch/R/compare-datasets.R | 7 crunch-1.26.1/crunch/R/conditional-transform.R | 14 crunch-1.26.1/crunch/R/consent.R | 8 crunch-1.26.1/crunch/R/context-manager.R | 2 crunch-1.26.1/crunch/R/crunchbox.R | 37 crunch-1.26.1/crunch/R/cube-dims.R | 3 crunch-1.26.1/crunch/R/cube-index-table.R | 40 crunch-1.26.1/crunch/R/cube-residuals.R | 4 crunch-1.26.1/crunch/R/cube-result.R | 6 crunch-1.26.1/crunch/R/cube-subset.R | 4 crunch-1.26.1/crunch/R/cube-transforms.R | 18 crunch-1.26.1/crunch/R/cut.R | 14 crunch-1.26.1/crunch/R/dataset-catalog.R | 3 crunch-1.26.1/crunch/R/dataset-extract.R | 107 +- crunch-1.26.1/crunch/R/dataset-reference.R | 2 crunch-1.26.1/crunch/R/dataset-stream.R | 5 crunch-1.26.1/crunch/R/dataset-update.R | 36 crunch-1.26.1/crunch/R/dataset.R | 16 crunch-1.26.1/crunch/R/datetime.R | 6 crunch-1.26.1/crunch/R/decks.R | 11 crunch-1.26.1/crunch/R/delete.R | 17 crunch-1.26.1/crunch/R/drop-rows.R | 2 crunch-1.26.1/crunch/R/export-dataset.R | 22 crunch-1.26.1/crunch/R/expressions.R | 10 crunch-1.26.1/crunch/R/filters.R | 12 crunch-1.26.1/crunch/R/folders.R | 4 crunch-1.26.1/crunch/R/fork-and-merge.R | 2 crunch-1.26.1/crunch/R/gadgets.R | 2 crunch-1.26.1/crunch/R/geo.R | 10 crunch-1.26.1/crunch/R/get-datasets.R | 21 crunch-1.26.1/crunch/R/github.R | 9 crunch-1.26.1/crunch/R/hide-variables.R | 46 - crunch-1.26.1/crunch/R/interact.R | 2 crunch-1.26.1/crunch/R/join-dataset.R | 3 crunch-1.26.1/crunch/R/json.R | 9 crunch-1.26.1/crunch/R/make-array.R | 14 crunch-1.26.1/crunch/R/members.R | 3 crunch-1.26.1/crunch/R/misc.R | 17 crunch-1.26.1/crunch/R/multitables.R | 19 crunch-1.26.1/crunch/R/new-dataset.R | 18 crunch-1.26.1/crunch/R/ordering.R | 15 crunch-1.26.1/crunch/R/pretty-print.R | 3 crunch-1.26.1/crunch/R/progress.R | 3 crunch-1.26.1/crunch/R/project-folder.R | 6 crunch-1.26.1/crunch/R/projects.R | 6 crunch-1.26.1/crunch/R/search.R | 2 crunch-1.26.1/crunch/R/share.R | 7 crunch-1.26.1/crunch/R/shoji-catalog.R | 17 crunch-1.26.1/crunch/R/shoji-folder.R | 9 crunch-1.26.1/crunch/R/shoji-order.R | 58 - crunch-1.26.1/crunch/R/shoji.R | 5 crunch-1.26.1/crunch/R/slides.R | 21 crunch-1.26.1/crunch/R/subtotals-and-headings.R | 16 crunch-1.26.1/crunch/R/subvariables.R | 50 - crunch-1.26.1/crunch/R/summary-insertions.R | 34 crunch-1.26.1/crunch/R/tab-book.R | 6 crunch-1.26.1/crunch/R/teams.R | 6 crunch-1.26.1/crunch/R/transform-calculate.R | 2 crunch-1.26.1/crunch/R/transform.R | 2 crunch-1.26.1/crunch/R/univariate.R | 12 crunch-1.26.1/crunch/R/user.R | 2 crunch-1.26.1/crunch/R/variable-as-methods.R | 3 crunch-1.26.1/crunch/R/variable-catalog.R | 11 crunch-1.26.1/crunch/R/variable-definition.R | 14 crunch-1.26.1/crunch/R/variable-folder.R | 12 crunch-1.26.1/crunch/R/variable-metadata.R | 2 crunch-1.26.1/crunch/R/variable-order.R | 6 crunch-1.26.1/crunch/R/variable-summary.R | 3 crunch-1.26.1/crunch/R/variable-type.R | 8 crunch-1.26.1/crunch/R/variable-update.R | 12 crunch-1.26.1/crunch/R/variables.R | 9 crunch-1.26.1/crunch/R/versions.R | 4 crunch-1.26.1/crunch/R/weight.R | 9 crunch-1.26.1/crunch/build/vignette.rds |binary crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/1/folders.json | 3 crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/1/folders/hidden.json |only crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/3.json | 1 crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/3/folders |only crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/3/folders.json |only crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/3/variables/birthyr.json | 12 crunch-1.26.1/crunch/inst/app.crunch.io/api/datasets/3/variables/gender.json | 3 crunch-1.26.1/crunch/inst/doc/projects.Rmd | 2 crunch-1.26.1/crunch/inst/doc/projects.html | 2 crunch-1.26.1/crunch/inst/httptest/start-vignette.R | 3 crunch-1.26.1/crunch/man/Categories.Rd | 8 crunch-1.26.1/crunch/man/SubtotalsHeadings.Rd | 16 crunch-1.26.1/crunch/man/VariableDefinition.Rd | 14 crunch-1.26.1/crunch/man/addSummaryStat.Rd | 28 crunch-1.26.1/crunch/man/applyAgainst.Rd | 10 crunch-1.26.1/crunch/man/archive-and-publish.Rd | 6 crunch-1.26.1/crunch/man/c-categories.Rd | 6 crunch-1.26.1/crunch/man/categoriesFromLevels.Rd | 1 crunch-1.26.1/crunch/man/combine.Rd | 16 crunch-1.26.1/crunch/man/compareDatasets.Rd | 4 crunch-1.26.1/crunch/man/conditionalTransform.Rd | 11 crunch-1.26.1/crunch/man/crunch-cut.Rd | 11 crunch-1.26.1/crunch/man/crunchBox.Rd | 18 crunch-1.26.1/crunch/man/embedCrunchBox.Rd | 2 crunch-1.26.1/crunch/man/flipArrays.Rd | 2 crunch-1.26.1/crunch/man/hideVariables.Rd | 4 crunch-1.26.1/crunch/man/importMultitable.Rd | 2 crunch-1.26.1/crunch/man/index.table.Rd | 40 crunch-1.26.1/crunch/man/interactVariables.Rd | 2 crunch-1.26.1/crunch/man/loadDataset.Rd | 2 crunch-1.26.1/crunch/man/makeCaseVariable.Rd | 28 crunch-1.26.1/crunch/man/makeWeight.Rd | 6 crunch-1.26.1/crunch/man/newMultitable.Rd | 2 crunch-1.26.1/crunch/man/newProject.Rd | 4 crunch-1.26.1/crunch/man/newSlide.Rd | 4 crunch-1.26.1/crunch/man/resolution.Rd | 2 crunch-1.26.1/crunch/man/setCrunchAPI.Rd | 1 crunch-1.26.1/crunch/man/tabBook.Rd | 4 crunch-1.26.1/crunch/man/toVariable.Rd | 6 crunch-1.26.1/crunch/tests/spelling.R | 4 crunch-1.26.1/crunch/tests/testthat/app.crunch.io/api/datasets-1a5a7a-POST.R | 64 - 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crunch-1.26.1/crunch/tests/testthat/test-change-category-id.R | 24 crunch-1.26.1/crunch/tests/testthat/test-combine-categories.R | 51 - crunch-1.26.1/crunch/tests/testthat/test-combine-responses.R | 6 crunch-1.26.1/crunch/tests/testthat/test-compare.R | 9 crunch-1.26.1/crunch/tests/testthat/test-conditional-transform.R | 16 crunch-1.26.1/crunch/tests/testthat/test-crunchbox.R | 63 + crunch-1.26.1/crunch/tests/testthat/test-cube-basic.R | 8 crunch-1.26.1/crunch/tests/testthat/test-cube-benchmarks.R | 22 crunch-1.26.1/crunch/tests/testthat/test-cube-calculations.R | 5 crunch-1.26.1/crunch/tests/testthat/test-cube-collapse-dimensions.R | 16 crunch-1.26.1/crunch/tests/testthat/test-cube-dims.R | 20 crunch-1.26.1/crunch/tests/testthat/test-cube-errors.R | 36 crunch-1.26.1/crunch/tests/testthat/test-cube-index-table.R | 2 crunch-1.26.1/crunch/tests/testthat/test-cube-mr.R | 28 crunch-1.26.1/crunch/tests/testthat/test-cube-nway.R | 59 + crunch-1.26.1/crunch/tests/testthat/test-cube-residuals-zed-scores.R | 23 crunch-1.26.1/crunch/tests/testthat/test-cube-subset.R | 5 crunch-1.26.1/crunch/tests/testthat/test-cube-transforms.R | 48 - crunch-1.26.1/crunch/tests/testthat/test-cube-with-array.R | 12 crunch-1.26.1/crunch/tests/testthat/test-cube-with-expression.R | 42 crunch-1.26.1/crunch/tests/testthat/test-cubes.R | 156 ++- crunch-1.26.1/crunch/tests/testthat/test-cut.R | 49 - crunch-1.26.1/crunch/tests/testthat/test-dataset-catalog.R | 15 crunch-1.26.1/crunch/tests/testthat/test-dataset-entity.R | 34 crunch-1.26.1/crunch/tests/testthat/test-dataset-reference.R | 7 crunch-1.26.1/crunch/tests/testthat/test-dataset-stream.R | 6 crunch-1.26.1/crunch/tests/testthat/test-datetime.R | 10 crunch-1.26.1/crunch/tests/testthat/test-decks.R | 50 - crunch-1.26.1/crunch/tests/testthat/test-derive-array.R | 70 + crunch-1.26.1/crunch/tests/testthat/test-derive-debug.R | 44 crunch-1.26.1/crunch/tests/testthat/test-derive.R | 3 crunch-1.26.1/crunch/tests/testthat/test-exclusion-filter.R | 6 crunch-1.26.1/crunch/tests/testthat/test-export-dataset.R | 62 - crunch-1.26.1/crunch/tests/testthat/test-expression-errors.R | 57 - crunch-1.26.1/crunch/tests/testthat/test-expressions.R | 2 crunch-1.26.1/crunch/tests/testthat/test-filters.R | 8 crunch-1.26.1/crunch/tests/testthat/test-flip-array.R | 8 crunch-1.26.1/crunch/tests/testthat/test-folders.R | 39 crunch-1.26.1/crunch/tests/testthat/test-formula.R | 6 crunch-1.26.1/crunch/tests/testthat/test-gadgets.R | 26 crunch-1.26.1/crunch/tests/testthat/test-geo.R | 36 crunch-1.26.1/crunch/tests/testthat/test-get-datasets.R | 32 crunch-1.26.1/crunch/tests/testthat/test-hide-variables.R | 105 +- crunch-1.26.1/crunch/tests/testthat/test-interact.R | 106 +- crunch-1.26.1/crunch/tests/testthat/test-make-array.R | 19 crunch-1.26.1/crunch/tests/testthat/test-merge-datasets.R | 14 crunch-1.26.1/crunch/tests/testthat/test-misc.R | 6 crunch-1.26.1/crunch/tests/testthat/test-multitables.R | 56 - crunch-1.26.1/crunch/tests/testthat/test-new-dataset.R | 22 crunch-1.26.1/crunch/tests/testthat/test-pretty-print.R | 2 crunch-1.26.1/crunch/tests/testthat/test-progress.R | 3 crunch-1.26.1/crunch/tests/testthat/test-project-folder.R | 40 crunch-1.26.1/crunch/tests/testthat/test-projects.R | 8 crunch-1.26.1/crunch/tests/testthat/test-share.R | 27 crunch-1.26.1/crunch/tests/testthat/test-shoji.R | 8 crunch-1.26.1/crunch/tests/testthat/test-subtotals-and-headings.R | 6 crunch-1.26.1/crunch/tests/testthat/test-subvariables.R | 60 - crunch-1.26.1/crunch/tests/testthat/test-summary-insertions.R | 98 +- crunch-1.26.1/crunch/tests/testthat/test-update-array.R | 131 ++ crunch-1.26.1/crunch/tests/testthat/test-update-with-missing.R | 84 + crunch-1.26.1/crunch/tests/testthat/test-update.R | 8 crunch-1.26.1/crunch/tests/testthat/test-user-info.R | 3 crunch-1.26.1/crunch/tests/testthat/test-user.R | 2 crunch-1.26.1/crunch/tests/testthat/test-variable-as-methods.R | 4 crunch-1.26.1/crunch/tests/testthat/test-variable-catalog.R | 29 crunch-1.26.1/crunch/tests/testthat/test-variable-folders.R | 9 crunch-1.26.1/crunch/tests/testthat/test-variable-order.R | 7 crunch-1.26.1/crunch/tests/testthat/test-variable-transforms.R | 2 crunch-1.26.1/crunch/tests/testthat/test-variables.R | 25 crunch-1.26.1/crunch/tests/testthat/test-versioning.R | 12 crunch-1.26.1/crunch/tests/testthat/test-webApp.R | 22 crunch-1.26.1/crunch/tests/testthat/test-weighting.R | 29 crunch-1.26.1/crunch/vignettes/crunch/5/api/datasets/1468ef/folders |only crunch-1.26.1/crunch/vignettes/crunch/5/api/datasets/1468ef/folders.json |only crunch-1.26.1/crunch/vignettes/projects.Rmd | 2 227 files changed, 2714 insertions(+), 1725 deletions(-)
Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using
MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many
other sources.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between bsts versions 0.9.0 dated 2019-05-21 and 0.9.1 dated 2019-06-07
bsts-0.9.0/bsts/R/format.prediction.data.R |only bsts-0.9.0/bsts/inst/tests/tests |only bsts-0.9.0/bsts/tests |only bsts-0.9.1/bsts/DESCRIPTION | 13 bsts-0.9.1/bsts/MD5 | 84 - bsts-0.9.1/bsts/NAMESPACE | 7 bsts-0.9.1/bsts/R/add.dynamic.regression.R | 1 bsts-0.9.1/bsts/R/add.local.level.R | 95 - bsts-0.9.1/bsts/R/bsts.R | 2 bsts-0.9.1/bsts/R/dirm.R | 2 bsts-0.9.1/bsts/R/format.learning.data.R | 3 bsts-0.9.1/bsts/R/format.timestamps.R | 66 bsts-0.9.1/bsts/R/mbsts.R | 474 +++--- bsts-0.9.1/bsts/R/mbsts.plots.R | 488 ++++-- bsts-0.9.1/bsts/R/plots.R | 12 bsts-0.9.1/bsts/R/predict.bsts.R | 4 bsts-0.9.1/bsts/R/predict.mbsts.R | 30 bsts-0.9.1/bsts/inst/tests/testthat/test-dirm.R | 8 bsts-0.9.1/bsts/inst/tests/testthat/test-goog.R |only bsts-0.9.1/bsts/inst/tests/testthat/test-multivariate.R | 22 bsts-0.9.1/bsts/inst/tests/testthat/test-seasonal.R | 167 +- bsts-0.9.1/bsts/man/add.shared.local.level.Rd | 17 bsts-0.9.1/bsts/man/mbsts.Rd |only bsts-0.9.1/bsts/man/plot.bsts.predictors.Rd | 1 bsts-0.9.1/bsts/man/plot.mbsts.Rd |only bsts-0.9.1/bsts/man/predict.bsts.Rd | 12 bsts-0.9.1/bsts/src/bsts_init.cc | 4 bsts-0.9.1/bsts/src/create_shared_state_model.cpp | 44 bsts-0.9.1/bsts/src/mbsts.cc | 377 ++--- bsts-0.9.1/bsts/src/model_manager.cc | 58 bsts-0.9.1/bsts/src/model_manager.h | 209 +- bsts-0.9.1/bsts/src/multivariate_gaussian_model_manager.cc | 946 ++++++------- bsts-0.9.1/bsts/src/multivariate_gaussian_model_manager.h | 228 +-- bsts-0.9.1/bsts/src/state_space_gaussian_model_manager.cc | 4 bsts-0.9.1/bsts/src/utils.h | 3 35 files changed, 1800 insertions(+), 1581 deletions(-)
Title: Nonparametric Estimation for Interval-Grouped Data
Description: Kernel density and distribution estimation for interval-grouped data (Reyes, Francisco-Fernandez and Cao 2016, 2017) <doi:10.1080/10485252.2016.1163348>, <doi:10.1007/s11749-017-0523-9>, (Gonzalez-Andujar, Francisco-Fernandez, Cao, Reyes, Urbano, Forcella and Bastida 2016) <doi:10.1111/wre.12216>
and nonparametric estimation of seedling emergence indices (Cao, Francisco-Fernandez, Anand, Bastida and Gonzalez-Andujar 2011) <doi:10.1017/S002185961100030X>.
Author: Daniel Barreiro Ures, Basilio B. Fraguela, Ramón Doallo Biempica, Ricardo Cao, Mario Francisco-Fernández, Miguel Reyes
Maintainer: Daniel Barreiro Ures <dbu5293@gmail.com>
Diff between binnednp versions 0.3.0 dated 2019-04-24 and 0.4.0 dated 2019-06-07
DESCRIPTION | 6 +-- MD5 | 8 ++--- R/anv.binned.R | 86 ++++++++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary man/anv.binned.Rd | 12 +++---- 5 files changed, 70 insertions(+), 42 deletions(-)
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureAuth versions 1.1.0 dated 2019-05-10 and 1.1.1 dated 2019-06-07
DESCRIPTION | 12 ++++++------ MD5 | 27 ++++++++++++++------------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/AzureAuth.R | 3 ++- R/AzureToken.R | 3 ++- R/initfuncs.R | 12 ++++++++++++ R/managed_token.R |only R/token.R | 13 ++++++++++--- README.md | 20 ++++++++++++++------ inst/doc/token.Rmd | 2 +- inst/doc/token.html | 2 +- man/AzureR_dir.Rd | 2 +- man/get_azure_token.Rd | 19 ++++++++++++++----- vignettes/token.Rmd | 2 +- 15 files changed, 83 insertions(+), 39 deletions(-)
Title: Visualisations for Generalized Additive Models
Description: Extension of the 'mgcv' package, providing visual tools for Generalized Additive Models that exploit the additive structure of such models, scale to large data sets and can be used in conjunction with a wide range of response distributions. The focus is providing visual methods for better understanding the model output and for aiding model checking and development beyond simple exponential family regression. The graphical framework is based on the layering system provided by 'ggplot2'.
Author: Matteo Fasiolo [aut, cre],
Raphael Nedellec [aut],
Yannig Goude [ctb],
Simon N. Wood [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between mgcViz versions 0.1.3 dated 2019-01-23 and 0.1.4 dated 2019-06-07
DESCRIPTION | 16 MD5 | 104 - NAMESPACE | 4 R/L_ciBar.R | 8 R/L_gridQCheck1D.R | 5 R/bamV.R | 2 R/check1D.R | 2 R/check2D.R | 6 R/gamV.R | 2 R/gamm4V.R |only R/gammV.R |only R/getViz.R | 11 R/mqgamV.R | 9 R/plotSlice.R | 12 R/plot_mgamViz.R | 2 R/plot_mgcv_smooth_1D.R | 9 R/plot_mgcv_smooth_2D.R | 3 R/plot_multi_mgcv_smooth_1D.R | 22 R/plot_multi_ptermFactor.R | 22 R/plot_ptermFactor.R | 2 R/plot_sos_smooth.R | 3 R/pterm.R | 4 R/qgamV.R | 6 R/sm.R | 1 R/zzz.R | 11 inst/doc/mgcviz.R | 20 inst/doc/mgcviz.html | 2793 +++++++++++++++++++++++++++--------------- inst/doc/mgcviz.rmd | 20 man/check.gamViz.Rd | 3 man/check0D.Rd | 4 man/check1D.Rd | 6 man/check2D.Rd | 6 man/gammV.Rd |only man/l_dens2D.Rd | 7 man/l_densCheck.Rd | 3 man/l_glyphs2D.Rd | 7 man/l_gridQCheck1D.Rd | 5 man/l_gridQCheck2D.Rd | 4 man/mqgamV.Rd | 4 man/plot.mgcv.smooth.1D.Rd | 14 man/plot.mgcv.smooth.2D.Rd | 13 man/plot.mgcv.smooth.MD.Rd | 6 man/plot.ptermFactor.Rd | 5 man/plot.sos.smooth.Rd | 3 man/plotDiff.sos.smooth.Rd | 5 man/plotRGL.mgcv.smooth.2D.Rd | 9 man/plotRGL.mgcv.smooth.MD.Rd | 6 man/print.plotGam.Rd | 3 man/pterm.Rd | 3 man/qgamV.Rd | 2 man/qq.gamViz.Rd | 4 man/qqplots.Rd | 9 man/simulate.gam.Rd | 5 tests/testthat/test-postSim.R |only vignettes/mgcviz.rmd | 20 55 files changed, 2140 insertions(+), 1115 deletions(-)
Title: Interim Monitoring Using Adaptively Weighted Log-Rank Test in
Clinical Trials
Description: For any spending function specified by the user, this
package provides corresponding boundaries for interim testing using
the adaptively weighted log-rank test developed by Yang and Prentice
(2010 <doi:10.1111/j.1541-0420.2009.01243.x>).
The package uses a re-sampling method to obtain stopping boundaries
at the interim looks.The output consists of stopping boundaries
and observed values of the test statistics at the interim looks,
along with nominal p-values defined as the probability of the test
exceeding the specific observed test statistic value or critical
value, regardless of the test behavior at other looks.
The asymptotic validity of the stopping boundaries is established
in Yang (2018 <doi:10.1002/sim.7958>).
Author: Daewoo Pak and Song Yang
Maintainer: Daewoo Pak <heavyrain.pak@gmail.com>
Diff between YPInterimTesting versions 1.0.2 dated 2019-03-22 and 1.0.3 dated 2019-06-07
YPInterimTesting-1.0.2/YPInterimTesting/data/virtual_data.rda |only YPInterimTesting-1.0.2/YPInterimTesting/man/virtual_data.Rd |only YPInterimTesting-1.0.3/YPInterimTesting/DESCRIPTION | 6 +-- YPInterimTesting-1.0.3/YPInterimTesting/MD5 | 18 +++++----- YPInterimTesting-1.0.3/YPInterimTesting/NEWS.md | 4 ++ YPInterimTesting-1.0.3/YPInterimTesting/R/RcppExports.R | 14 +++---- YPInterimTesting-1.0.3/YPInterimTesting/R/ypinterim.default.R | 16 +++++++- YPInterimTesting-1.0.3/YPInterimTesting/data/virtual.rda |only YPInterimTesting-1.0.3/YPInterimTesting/man/YPInterimTesting-internal.Rd | 2 - YPInterimTesting-1.0.3/YPInterimTesting/man/YPInterimTesting-package.Rd | 3 + YPInterimTesting-1.0.3/YPInterimTesting/man/virtual.Rd |only YPInterimTesting-1.0.3/YPInterimTesting/man/ypinterim.Rd | 4 +- 12 files changed, 42 insertions(+), 25 deletions(-)
More information about YPInterimTesting at CRAN
Permanent link
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
there is native support for parallel and distributed computing,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.3.0 dated 2019-05-19 and 7.4.0 dated 2019-06-07
drake-7.3.0/drake/R/exec-subspace.R |only drake-7.4.0/drake/DESCRIPTION | 14 drake-7.4.0/drake/MD5 | 221 +++--- drake-7.4.0/drake/NAMESPACE | 6 drake-7.4.0/drake/NEWS.md | 43 + drake-7.4.0/drake/R/api-build.R | 2 drake-7.4.0/drake/R/api-cache.R | 106 +-- drake-7.4.0/drake/R/api-callr.R | 39 + drake-7.4.0/drake/R/api-clean.R | 61 - drake-7.4.0/drake/R/api-diagnose.R | 7 drake-7.4.0/drake/R/api-dsl.R | 60 + drake-7.4.0/drake/R/api-examples.R | 2 drake-7.4.0/drake/R/api-exposeimports.R | 15 drake-7.4.0/drake/R/api-make.R | 21 drake-7.4.0/drake/R/api-outdated.R | 4 drake-7.4.0/drake/R/api-plan.R | 35 + drake-7.4.0/drake/R/api-predict.R | 4 drake-7.4.0/drake/R/api-progress.R | 26 drake-7.4.0/drake/R/api-read.R | 57 + drake-7.4.0/drake/R/api-slice.R |only drake-7.4.0/drake/R/api-times.R | 12 drake-7.4.0/drake/R/backend-clustermq.R | 39 - drake-7.4.0/drake/R/backend-future.R | 4 drake-7.4.0/drake/R/backend-loop.R | 7 drake-7.4.0/drake/R/exec-dependencies.R | 2 drake-7.4.0/drake/R/exec-imports.R | 3 drake-7.4.0/drake/R/exec-memory.R | 97 ++- drake-7.4.0/drake/R/exec-meta.R | 133 ++-- drake-7.4.0/drake/R/exec-run.R | 6 drake-7.4.0/drake/R/exec-session.R | 17 drake-7.4.0/drake/R/exec-store.R | 44 - 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Title: MCMC for Spike and Slab Regression
Description: Spike and slab regression a la McCulloch and George (1997).
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between BoomSpikeSlab versions 1.1.0 dated 2019-05-18 and 1.1.1 dated 2019-06-07
BoomSpikeSlab-1.1.0/BoomSpikeSlab/tests |only BoomSpikeSlab-1.1.1/BoomSpikeSlab/DESCRIPTION | 12 - BoomSpikeSlab-1.1.1/BoomSpikeSlab/MD5 | 83 ++++------ BoomSpikeSlab-1.1.1/BoomSpikeSlab/NAMESPACE | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/R/spike.slab.prior.R | 67 ++++++++ BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-logit-zellner-prior.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-logit.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-mlm.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-nested-regression.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-nnet.R | 3 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-poisson.R | 3 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-probit.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-quantile.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-repeatability.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-shrinkage-regression.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-spike-slab.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/tests/testthat/test-swap-move.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-logit-zellner-prior.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-logit.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-mlm.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-nested-regression.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-nnet.R | 3 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-poisson.R | 3 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-probit.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-quantile.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-repeatability.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-shrinkage-regression.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-spike-slab.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/inst/tests/testthat/test-swap-move.R | 2 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/model.matrix.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/predict.lm.spike.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/print.summary.lm.spike.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/residuals.lm.spike.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/spike.slab.prior.Rd | 24 ++ BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/summarize_spike_slab_coefficients.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/summary.lm.spike.Rd | 1 BoomSpikeSlab-1.1.1/BoomSpikeSlab/man/summary.logit.spike.Rd | 1 37 files changed, 185 insertions(+), 61 deletions(-)
More information about RandomCoefficients at CRAN
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More information about PakPMICS2018hh at CRAN
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Title: Intrinsic Dimension Estimation
Description: A variety of methods for estimating intrinsic dimension of data sets (i.e the manifold or Hausdorff dimension of the support of the distribution that generated the data) as reviewed in Johnsson, K. (2016, ISBN:978-91-7623-921-6) and Johnsson, K., Soneson, C. and Fontes, M. (2015) <doi:10.1109/TPAMI.2014.2343220>. Furthermore, to evaluate the performance of these estimators, functions for generating data sets with given intrinsic dimensions are provided.
Author: Kerstin Johnsson, Lund University
Maintainer: Kerstin Johnsson <kerstin.johnsson@hotmail.com>
Diff between intrinsicDimension versions 1.1.0 dated 2017-11-26 and 1.2.0 dated 2019-06-07
DESCRIPTION | 10 MD5 | 17 - NAMESPACE | 1 NEWS.md |only R/ESS.R | 74 +++- build/vignette.rds |binary inst/doc/intrinsic-dimension-estimation.Rmd | 2 inst/doc/intrinsic-dimension-estimation.html | 415 +++++++++++++++++++++------ man/essReference.Rd |only tests |only vignettes/intrinsic-dimension-estimation.Rmd | 2 11 files changed, 395 insertions(+), 126 deletions(-)
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Title: Smooth Additive Quantile Regression Models
Description: Smooth additive quantile regression models, fitted using
the methods of Fasiolo et al. (2017) <arXiv:1707.03307>. Differently from
'quantreg', the smoothing parameters are estimated automatically by marginal
loss minimization, while the regression coefficients are estimated using either
PIRLS or Newton algorithm. The learning rate is determined so that the Bayesian
credible intervals of the estimated effects have approximately the correct
coverage. The main function is qgam() which is similar to gam() in 'mgcv', but
fits non-parametric quantile regression models.
Author: Matteo Fasiolo [aut, cre],
Simon N. Wood [ctb],
Margaux Zaffran [ctb],
Yannig Goude [ctb],
Raphael Nedellec [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between qgam versions 1.2.3 dated 2019-01-24 and 1.3.0 dated 2019-06-07
DESCRIPTION | 14 MD5 | 86 +- NAMESPACE | 3 R/I_cleanData.R | 68 ++ R/I_fitShash.R |only R/I_getErrParam.R |only R/I_llkShash.R |only R/I_objFunLearnFast.R | 2 R/I_shashCDF.R |only R/I_shashMode.R |only R/I_shashQf.R |only R/I_tuneLearnBootstrapping.R | 2 R/I_tuneLearnFullFits.R | 25 R/check_learnFast.R | 4 R/check_qgam.R | 9 R/cqcheck.R | 2 R/cqcheckI.R | 8 R/elf.R | 15 R/elflss.R | 22 R/generic_functions.R | 3 R/mqgam.R | 21 R/pinLoss.R |only R/qdo.R | 3 R/qgam.R | 69 +- R/tuneLearn.R | 29 R/tuneLearnFast.R | 89 +- build/vignette.rds |binary inst/doc/qgam.R | 104 +-- inst/doc/qgam.Rmd | 168 +---- inst/doc/qgam.html | 913 +++++++++-------------------- man/check.Rd | 3 man/check.learnFast.Rd | 4 man/cqcheck.Rd | 2 man/cqcheckI.Rd | 8 man/elf.Rd | 5 man/elflss.Rd | 20 man/mqgam.Rd | 18 man/pinLoss.Rd |only man/qdo.Rd | 3 man/qgam.Rd | 40 - man/tuneLearn.Rd | 16 man/tuneLearnFast.Rd | 47 - tests/testthat/test-calFastTuneLearn.R | 8 tests/testthat/test-calFastTuneLearnFast.R | 10 tests/testthat/test-check_qgam.R | 26 tests/testthat/test-tuneLearn.R | 68 +- tests/testthat/test-tuneLearnFast.R | 70 +- vignettes/qgam.Rmd | 168 +---- 48 files changed, 930 insertions(+), 1245 deletions(-)
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Title: Compute Effect Sizes of the Difference
Description: Computes various effect sizes of the difference, their variance, and confidence interval. This package treats Cohen's d, Hedges' d, biased/unbiased c (an effect size between a mean and a constant) and e (an effect size between means without assuming the variance equality).
Author: Satoshi Aoki
Maintainer: Satoshi Aoki <aokis1ll1@gmail.com>
Diff between es.dif versions 1.0.0 dated 2019-01-25 and 1.0.1 dated 2019-06-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- man/es.c.Rd | 9 +++++++-- man/es.d.Rd | 2 ++ man/es.e.Rd | 3 +++ man/es.para.c.Rd | 7 ++++++- man/es.para.d.Rd | 2 ++ man/es.para.e.Rd | 3 +++ 8 files changed, 34 insertions(+), 14 deletions(-)
Title: List Comprehensions
Description: Provides 'Python'-style list comprehensions.
List comprehension expressions use usual loops (for(), while() and repeat()) and
usual if() as list producers. In many cases it gives more concise notation than
standard "*apply + filter" strategy.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between comprehenr versions 0.6.5 dated 2019-04-09 and 0.6.6 dated 2019-06-07
DESCRIPTION | 6 +- MD5 | 22 +++++----- NAMESPACE | 1 NEWS | 4 + R/to_list.R | 27 ++++++++++-- build/vignette.rds |binary inst/doc/Introduction.R | 4 + inst/doc/Introduction.html | 88 +++++++++++++++++++++++------------------- inst/doc/Introduction.rmd | 4 + man/to_list.Rd | 11 ++++- tests/testthat/test_to_list.R | 10 ++++ vignettes/Introduction.rmd | 4 + 12 files changed, 124 insertions(+), 57 deletions(-)