Title: Interactive Visualization of Bayesian Networks
Description: Bayesian networks provide an intuitive framework for probabilistic reasoning
and its graphical nature can be interpreted quite clearly. Graph based methods
of machine learning are becoming more popular because they offer a richer model
of knowledge that can be understood by a human in a graphical format. The 'bnviewer'
is an R Package that allows the interactive visualization of Bayesian Networks.
The aim of this package is to improve the Bayesian Networks visualization over
the basic and static views offered by existing packages.
Author: Robson Fernandes
Maintainer: Robson Fernandes <robs.fernandes@outlook.com>
Diff between bnviewer versions 0.1.2 dated 2019-03-31 and 0.1.3 dated 2019-06-08
DESCRIPTION | 10 +++++----- MD5 | 19 +++++++++++-------- NAMESPACE | 2 ++ R/bn.to.igraph.R |only R/bnviewer.R | 40 +++++++++++++++++++++++++++++++++++++--- R/strength.viewer.R | 25 ++++++++++++++++++++++++- man/bn.to.igraph.Rd |only man/bnviewer-package.Rd | 6 +++--- man/strength.viewer.Rd | 4 ++++ man/viewer.Rd | 16 ++++++++++++---- tests/coronary.R | 4 +++- tests/layoutHierarchical.R |only 12 files changed, 101 insertions(+), 25 deletions(-)
Title: A Framework for Reproducible and Collaborative Data Science
Description: Provides a workflow for your analysis projects by combining
literate programming ('knitr' and 'rmarkdown') and version control
('Git', via 'git2r') to generate a website containing time-stamped,
versioned, and documented results.
Author: John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Peter Carbonetto [aut] (<https://orcid.org/0000-0003-1144-6780>),
Matthew Stephens [aut] (<https://orcid.org/0000-0001-5397-9257>),
Luke Zappia [ctb] (Instructions for hosting with GitLab),
Pierre Formont [ctb] (Support for hosting with Shiny Server),
Tim Trice [ctb] (Instructions for sharing common code),
Jiaxiang Li [ctb] (Function wflow_toc() to create table of contents)
Maintainer: John Blischak <jdblischak@uchicago.edu>
Diff between workflowr versions 1.3.0 dated 2019-04-15 and 1.4.0 dated 2019-06-08
DESCRIPTION | 14 MD5 | 100 +-- NEWS.md | 55 + R/git.R | 49 - R/git2r.R | 13 R/report.R | 159 +++++ R/utility.R | 18 R/wflow_build.R | 3 R/wflow_git_pull.R | 7 R/wflow_git_push.R | 32 - R/wflow_publish.R | 1 R/wflow_use_github.R | 219 ++++++- R/wflow_use_gitlab.R | 82 +- R/wflow_view.R | 15 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/wflow-01-getting-started.R | 8 inst/doc/wflow-01-getting-started.Rmd | 50 + inst/doc/wflow-01-getting-started.html | 80 +- inst/doc/wflow-02-customization.html | 6 inst/doc/wflow-03-migrating.html | 6 inst/doc/wflow-04-how-it-works.html | 6 inst/doc/wflow-05-faq.Rmd | 63 +- inst/doc/wflow-05-faq.html | 39 + inst/doc/wflow-06-gitlab.Rmd | 8 inst/doc/wflow-06-gitlab.html | 7 inst/doc/wflow-07-common-code.html | 6 inst/doc/wflow-08-deploy.Rmd | 2 inst/doc/wflow-08-deploy.html | 8 man/wflow_build.Rd | 5 man/wflow_git_push.Rd | 11 man/wflow_publish.Rd | 3 man/wflow_use_github.Rd | 69 +- man/wflow_use_gitlab.Rd | 32 - tests/testthat/files/test-wflow_update/post/_workflowr.yml | 2 tests/testthat/test-build_rmd.R | 8 tests/testthat/test-build_rmd_external.R | 8 tests/testthat/test-git.R | 19 tests/testthat/test-git2r.R | 14 tests/testthat/test-report.R | 383 ++++++++++++- tests/testthat/test-utility.R | 19 tests/testthat/test-wflow_git_commit.R | 16 tests/testthat/test-wflow_git_push_pull.R | 25 tests/testthat/test-wflow_html.R | 8 tests/testthat/test-wflow_start.R | 2 tests/testthat/test-wflow_use_github.R | 116 +++ tests/testthat/test-wflow_use_gitlab.R | 67 +- vignettes/wflow-01-getting-started.Rmd | 50 + vignettes/wflow-05-faq.Rmd | 63 +- vignettes/wflow-06-gitlab.Rmd | 8 vignettes/wflow-08-deploy.Rmd | 2 51 files changed, 1613 insertions(+), 376 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT).
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.2-6 dated 2019-06-04 and 1.2-7 dated 2019-06-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/seriation.pdf |binary src/init.c | 6 +----- 5 files changed, 14 insertions(+), 13 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.10 dated 2019-05-29 and 3.2.11 dated 2019-06-08
rscala-3.2.10/rscala/inst/java/scala-2.13.0-RC2 |only rscala-3.2.10/rscala/java/rscala_2.12-3.2.10-SNAPSHOT-sources.jar |only rscala-3.2.11/rscala/DESCRIPTION | 8 - rscala-3.2.11/rscala/MD5 | 31 ++-- rscala-3.2.11/rscala/NEWS | 4 rscala-3.2.11/rscala/R/scalaConfig.R | 66 +++++----- rscala-3.2.11/rscala/R/scalaJARs.R | 6 rscala-3.2.11/rscala/R/scalaSBT.R | 32 +++- rscala-3.2.11/rscala/R/sysdata.rda |binary rscala-3.2.11/rscala/README.md | 2 rscala-3.2.11/rscala/inst/data-raw/urls.txt | 4 rscala-3.2.11/rscala/inst/doc/rscala.pdf |binary rscala-3.2.11/rscala/inst/java/scala-2.11/rscala.jar |binary rscala-3.2.11/rscala/inst/java/scala-2.12/rscala.jar |binary rscala-3.2.11/rscala/inst/java/scala-2.13 |only rscala-3.2.11/rscala/java/rscala-source.jar |binary rscala-3.2.11/rscala/man/scalaDevelDeployJARs.Rd | 4 rscala-3.2.11/rscala/man/scalaSBT.Rd | 2 18 files changed, 90 insertions(+), 69 deletions(-)
Title: Network-Based Regularization for Generalized Linear Models
Description: Network-based regularization has achieved success in variable selection for
high-dimensional biological data due to its ability to incorporate correlations among
genomic features. This package provides procedures of network-based variable selection
for generalized linear models (Ren et al. (2017) <doi:10.1186/s12863-017-0495-5> and
Ren et al. (2019) <doi:10.1002/gepi.22194>). Two recent additions are the robust network
regularization for the survival response and the network regularization for continuous
response. Functions for other regularization methods will be included in the forthcoming
upgraded versions.
Author: Jie Ren, Luann C. Jung, Yinhao Du, Cen Wu, Yu Jiang, Junhao Liu
Maintainer: Jie Ren <jieren@ksu.edu>
Diff between regnet versions 0.3.0 dated 2018-05-22 and 0.4.0 dated 2019-06-08
DESCRIPTION | 17 ++--- MD5 | 57 ++++++++-------- NEWS.md |only R/ContCV.R | 10 +- R/LogitCD.R | 2 R/LogitCV.R | 10 +- R/SurvCV.R | 15 ++-- R/Utilities.R | 4 + R/cv.regnet.R | 51 +++++++++------ R/print.regnet.R | 1 R/regnet-package.R |only R/regnet.R | 13 ++- README.md | 166 ++++++++++++++++++++++++++++++++----------------- man/cv.regnet.Rd | 47 ++++++++----- man/print.cv.regnet.Rd | 3 man/regnet-package.Rd |only man/regnet.Rd | 10 +- src/ContCD.cpp | 6 - src/ContCD.h | 6 - src/LogitCD.cpp | 6 - src/LogitCD.h | 6 - src/Makevars | 15 ++++ src/Makevars.win | 14 +++- src/NonRobust.cpp | 6 - src/NonRobust.h | 6 - src/QR.cpp | 2 src/QR.h | 2 src/Robust.cpp | 6 - src/Robust.h | 6 - src/Utilities.cpp | 6 - src/Utilities.h | 6 - 31 files changed, 308 insertions(+), 191 deletions(-)
Title: Penalized Elastic Net S/MM-Estimator of Regression
Description: Robust penalized elastic net S and MM estimator for linear
regression. The method is described in detail in
Cohen Freue, G. V., Kepplinger, D., Salibian-Barrera, M., and Smucler, E.
(2017) <https://gcohenfr.github.io/pdfs/PENSE_manuscript.pdf>.
Author: David Kepplinger [aut, cre],
Matias Salibian-Barrera [aut],
Gabriela Cohen Freue [aut],
Derek Cho [ctb]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between pense versions 1.2.4 dated 2019-04-27 and 1.2.5 dated 2019-06-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 ++++- configure | 18 +++++++++--------- configure.ac | 2 +- src/BLAS.h | 4 ++++ src/InitialEstimator.cpp | 3 ++- src/PSCxx.cpp | 3 ++- src/autoconfig.win.h | 4 ++-- 9 files changed, 36 insertions(+), 27 deletions(-)
Title: Sensitivity Analysis of Neural Networks
Description: Analysis functions to quantify inputs importance in neural network models.
Functions are available for calculating and plotting the inputs importance and obtaining
the activation function of each neuron layer and its derivatives. The importance of a given
input is defined as the distribution of the derivatives of the output with respect to that
input in each training data point.
Author: José Portela González [aut],
Jaime Pizarroso Gonzalo [ctb, cre]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@alu.comillas.edu>
Diff between NeuralSens versions 0.0.2 dated 2019-06-04 and 0.0.3 dated 2019-06-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/SensAnalysisMLP.R | 10 +++++++++- man/SensAnalysisMLP.Rd | 6 ++++++ 4 files changed, 21 insertions(+), 7 deletions(-)
Title: Analyze Cricketers and Cricket Teams Based on ESPN Cricinfo
Statsguru
Description: Tools for analyzing performances of cricketers based on stats in
ESPN Cricinfo Statsguru. The toolset can be used for analysis of Tests,ODIs
and Twenty20 matches of both batsmen and bowlers. The package can also be used to
analyze team performances.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between cricketr versions 0.0.17 dated 2019-03-07 and 0.0.19 dated 2019-06-08
DESCRIPTION | 14 ++- MD5 | 108 ++++++++++++++++------------- R/clean.R | 2 R/cleanBowlerData.R | 2 R/cleanTeamData.R |only R/getMatchType.R |only R/getTeamData.R |only R/getTeamDataHomeAway.R |only R/getTeamNumber.R |only R/plotTimelineofWinsLosses.R |only R/teamWinLossStatusAtGrounds.R |only R/teamWinLossStatusVsOpposition.R |only build/partial.rdb |binary man/batsman4s.Rd | 5 + man/batsman4s6s.Rd | 2 man/batsman6s.Rd | 2 man/batsmanAvgRunsGround.Rd | 2 man/batsmanAvgRunsOpposition.Rd | 2 man/batsmanContributionWonLost.Rd | 2 man/batsmanDismissals.Rd | 2 man/batsmanMeanStrikeRate.Rd | 2 man/batsmanMovingAverage.Rd | 2 man/batsmanPerfBoxHist.Rd | 2 man/batsmanPerfForecast.Rd | 2 man/batsmanPerfHomeAway.Rd | 2 man/batsmanRunsFreqPerf.Rd | 2 man/batsmanRunsLikelihood.Rd | 2 man/batsmanRunsPredict.Rd | 2 man/batsmanRunsRanges.Rd | 3 man/batsmanScoringRateODTT.Rd | 2 man/battingPerf3d.Rd | 2 man/bowlerAvgWktsGround.Rd | 2 man/bowlerAvgWktsOpposition.Rd | 2 man/bowlerContributionWonLost.Rd | 2 man/bowlerEconRate.Rd | 2 man/bowlerHistWickets.Rd | 2 man/bowlerMovingAverage.Rd | 2 man/bowlerPerfForecast.Rd | 2 man/bowlerPerfHomeAway.Rd | 2 man/bowlerWktRateTT.Rd | 2 man/bowlerWktsFreqPercent.Rd | 2 man/bowlerWktsRunsPlot.Rd | 2 man/checkBatsmanInForm.Rd | 2 man/checkBowlerInForm.Rd | 2 man/clean.Rd | 2 man/cleanBowlerData.Rd | 2 man/cleanTeamData.Rd |only man/getMatchType.Rd |only man/getTeamData.Rd |only man/getTeamDataHomeAway.Rd |only man/getTeamNumber.Rd |only man/plotTimelineofWinsLosses.Rd |only man/relativeBatsmanSR.Rd | 2 man/relativeBatsmanSRODTT.Rd | 3 man/relativeBowlerCumulativeAvgEconRate.Rd | 2 man/relativeBowlingER.Rd | 3 man/relativeBowlingERODTT.Rd | 2 man/relativeBowlingPerf.Rd | 2 man/relativeRunsFreqPerf.Rd | 2 man/relativeRunsFreqPerfODTT.Rd | 2 man/relativeWktRateTT.Rd | 2 man/teamWinLossStatusAtGrounds.Rd |only man/teamWinLossStatusVsOpposition.Rd |only 63 files changed, 158 insertions(+), 58 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in
photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse
ratios and other derived quantities from spectral data. Local maxima and
minima. Conversion between energy- and photon-based units. Wavelength
interpolation. Astronomical calculations related solar angles and day
length. Colours and vision. This package is part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.27 dated 2019-04-25 and 0.9.28 dated 2019-06-08
DESCRIPTION | 16 ++-- MD5 | 122 +++++++++++++++++----------------- NAMESPACE | 6 + NEWS | 6 + R/copy.attr.R | 1 R/meeus.r | 3 R/on-attach.R | 2 R/spct.classes.r | 106 ++++++++++++++++++++++++++++-- R/sun.calc.r | 130 +++++++++++++++++++++++++------------ README.md | 4 - build/vignette.rds |binary data/A.illuminant.spct.rda |binary data/D2-FEL-constants.rda |binary data/D65.illuminant.spct.rda |binary data/Ler-leaf-spct.rda |binary data/beesxyz.spct.rda |binary data/black_body.spct.rda |binary data/ccd.spct.rda |binary data/ciev10.spct.rda |binary data/ciev2.spct.rda |binary data/ciexyzCC10.spct.rda |binary data/ciexyzCC2.spct.rda |binary data/ciexyzCMF10.spct.rda |binary data/ciexyzCMF2.spct.rda |binary data/clear.spct.rda |binary data/clear_body.spct.rda |binary data/filter-cps-mspct.rda |binary data/green_leaf.spct.rda |binary data/opaque.spct.rda |binary data/photodiode.spct.rda |binary data/polyester.spct.rda |binary data/sun.daily.data.rda |binary data/sun.daily.spct.rda |binary data/sun.data.rda |binary data/sun.spct.rda |binary data/white-led-spct.rda |binary data/white_body.spct.rda |binary data/yellow.gel.rda |binary inst/doc/userguide1-intro.html | 6 - inst/doc/userguide2-radiation.html | 8 +- inst/doc/userguide3-astronomy.html | 26 +++---- man/day_night.Rd | 54 ++++++++++----- man/getHowMeasured.Rd |only man/getInstrDesc.Rd | 5 - man/getInstrSettings.Rd | 5 - man/getRfrType.Rd | 3 man/getScaled.Rd | 3 man/getWhatMeasured.Rd | 5 - man/getWhenMeasured.Rd | 5 - man/getWhereMeasured.Rd | 5 - man/get_attributes.Rd | 5 - man/isValidInstrDesc.Rd | 5 - man/isValidInstrSettings.Rd | 5 - man/setHowMeasured.Rd |only man/setInstrDesc.Rd | 4 - man/setInstrSettings.Rd | 5 - man/setRfrType.Rd | 11 ++- man/setWhatMeasured.Rd | 5 - man/setWhenMeasured.Rd | 5 - man/setWhereMeasured.Rd | 5 - man/sun_angles.Rd | 15 ++++ man/trimInstrDesc.Rd | 5 - man/trimInstrSettings.Rd | 5 - 63 files changed, 408 insertions(+), 188 deletions(-)
Title: Physical and Physiological Ecosystem Properties from Eddy
Covariance Data
Description: Calculation of physical (e.g. aerodynamic conductance, surface temperature),
and physiological (e.g. canopy conductance, water-use efficiency) ecosystem properties
from eddy covariance data and accompanying meteorological measurements. Calculations
assume the land surface to behave like a 'big-leaf' and return bulk ecosystem/canopy variables.
Author: Juergen Knauer [aut, cre],
Soenke Zaehle [ctb],
Tarek El-Madany [ctb],
Mirco Migliavacca [ctb],
Thomas Wutzler [aut]
Maintainer: Juergen Knauer <Juergen.Knauer@csiro.au>
Diff between bigleaf versions 0.7.0 dated 2019-03-20 and 0.7.1 dated 2019-06-08
DESCRIPTION | 9 MD5 | 12 NEWS | 6 inst/doc/bigleaf_tutorial.R | 2 inst/doc/bigleaf_tutorial.Rmd | 2 inst/doc/bigleaf_tutorial.pdf | 2028 ++++++++++++++++++++--------------------- vignettes/bigleaf_tutorial.Rmd | 2 7 files changed, 1024 insertions(+), 1037 deletions(-)
More information about PakPMICS2018mm at CRAN
Permanent link
Title: Miscellaneous Tools for Chinese Text Mining and More
Description: Efforts are made to make Chinese text mining easier, faster, and robust to errors.
Document term matrix can be generated by only one line of code; detecting encoding,
segmenting and removing stop words are done automatically.
Some convenient tools are also supplied.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between chinese.misc versions 0.2.0 dated 2019-03-03 and 0.2.1 dated 2019-06-08
chinese.misc-0.2.0/chinese.misc/NEWS |only chinese.misc-0.2.1/chinese.misc/DESCRIPTION | 10 - chinese.misc-0.2.1/chinese.misc/MD5 | 9 - chinese.misc-0.2.1/chinese.misc/R/corp_or_dtm.R | 182 ++++++++++++++++++--- chinese.misc-0.2.1/chinese.misc/R/second_dtm.R | 78 +++++++++ chinese.misc-0.2.1/chinese.misc/man/corp_or_dtm.Rd | 7 6 files changed, 255 insertions(+), 31 deletions(-)
Title: Atomic Force Microscope Image Analysis
Description: Provides Atomic Force Microscope images analysis such as Gaussian mixes identification, Power
Spectral Density, roughness against lengthscale, experimental variogram and variogram models,
fractal dimension and scale, 2D network analysis. The AFM images can be exported to STL format for 3D
printing.
Author: Mathieu Beauvais [aut, cre],
Irma Liascukiene [aut],
Jessem Landoulsi [aut]
Maintainer: Mathieu Beauvais <beauvais.escp@gmail.com>
Diff between AFM versions 1.2.4 dated 2018-04-28 and 1.2.6 dated 2019-06-08
DESCRIPTION | 24 MD5 | 76 - NAMESPACE | 6 NEWS | 7 R/AFM3DPrinter.R | 2 R/AFMGaussianMixAnalyser.R |only R/AFMImage.R | 2 R/AFMImageAnalyser.R | 5 R/AFMNetworksAnalyser.R | 100 - R/AFMPSDAnalyser.R | 137 +- R/AFMReportMaker.R | 77 + R/pkgname.R | 4 inst/CITATION |only inst/shiny/AFM-desktop/server.R | 661 +++++++++- inst/shiny/AFM-desktop/ui.R | 53 man/AFM.Rd | 2 man/AFMImage-class.Rd | 9 man/AFMImageAnalyser-class-initialize.Rd | 9 man/AFMImageAnalyser-class.Rd | 5 man/AFMImageFractalDimensionMethod-class.Rd | 9 man/AFMImageFractalDimensionsAnalysis-class.Rd | 11 man/AFMImageGaussianMixAnalysis-class.Rd |only man/AFMImageNetworksAnalysis-class.Rd | 5 man/AFMImagePSDAnalysis-class.Rd | 26 man/AFMImagePSDSlopesAnalysis-class.Rd | 5 man/AFMImageVariogramAnalysis-class.Rd | 18 man/AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd | 1 man/AFMImageVariogramAnalysis-getDTModelEvaluation-method.Rd | 1 man/AFMImageVariogramAnalysis-getDTModelSillRange-method.Rd | 1 man/AFMImageVariogramModel-class.Rd | 5 man/AFMImageVariogramSlopesAnalysis-class.Rd | 5 man/calculate3DModel-methods.Rd | 3 man/displayColoredNetworkWithVerticesSize.Rd | 3 man/dnormalmix.Rd |only man/getIntersectionForRoughnessAgainstLengthscale.Rd |only man/getLogLogOmnidirectionalSlopeGraph.Rd | 3 man/getNetworkParameters-methods.Rd | 39 man/identifyEdgesFromCircles.Rd | 3 man/loglike.normalmix.Rd |only man/performGaussianMixCalculation.Rd |only man/pnormmix.Rd |only tests/testthat/testAFMImageGaussianMix.R |only tests/testthat/testAFMImageNetworkAnalyser.R |only tests/testthat/testAFMReportMaker.R | 1 44 files changed, 1062 insertions(+), 256 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [ctb],
Matthias Carnein [ctb],
Dennis Assenmacher [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.3-0 dated 2018-06-02 and 1.3-1 dated 2019-06-08
stream-1.3-0/stream/src/BICO/clueexception.h |only stream-1.3-0/stream/src/BICO/invalidargumentexception.h |only stream-1.3-0/stream/src/BICO/invalidruntimeconfigurationexception.h |only stream-1.3-0/stream/src/BICO/randomgenerator.h |only stream-1.3-0/stream/src/BICO/randomness.cpp |only stream-1.3-0/stream/src/BICO/randomness.h |only stream-1.3-1/stream/DESCRIPTION | 26 +-- stream-1.3-1/stream/MD5 | 67 ++++------ stream-1.3-1/stream/NAMESPACE | 5 stream-1.3-1/stream/NEWS.md | 16 ++ stream-1.3-1/stream/R/AAA.R | 13 + stream-1.3-1/stream/R/DSC_BICO.R | 17 -- stream-1.3-1/stream/R/DSC_EA.R |only stream-1.3-1/stream/R/DSC_evoStream.R |only stream-1.3-1/stream/R/animation.R | 3 stream-1.3-1/stream/R/zzz.R | 3 stream-1.3-1/stream/README.md | 4 stream-1.3-1/stream/build/vignette.rds |binary stream-1.3-1/stream/inst/CITATION | 11 - stream-1.3-1/stream/inst/doc/stream.pdf |binary stream-1.3-1/stream/inst/doc/stream_extension.pdf |binary stream-1.3-1/stream/man/DSC.Rd | 2 stream-1.3-1/stream/man/DSC_BICO.Rd | 4 stream-1.3-1/stream/man/DSC_EA.Rd |only stream-1.3-1/stream/man/DSC_TwoStage.Rd | 22 +-- stream-1.3-1/stream/man/DSC_evoStream.Rd |only stream-1.3-1/stream/man/animation.Rd | 2 stream-1.3-1/stream/src/BICO.cpp | 39 +++-- stream-1.3-1/stream/src/BICO/bico.h | 20 +- stream-1.3-1/stream/src/BICO/kmeans.h | 54 ++++---- stream-1.3-1/stream/src/BICO/kmeansevaluator.h | 8 - stream-1.3-1/stream/src/BICO/master.h | 4 stream-1.3-1/stream/src/BICO/point.cpp | 48 +++---- stream-1.3-1/stream/src/BICO/point.h | 6 stream-1.3-1/stream/src/BICO/proxysolution.h | 6 stream-1.3-1/stream/src/BICO/realspaceprovider.cpp | 2 stream-1.3-1/stream/src/DBSTREAM.cpp | 8 + stream-1.3-1/stream/src/Makevars | 2 stream-1.3-1/stream/src/RcppExports.cpp | 2 stream-1.3-1/stream/src/evoStream.cpp |only 40 files changed, 210 insertions(+), 184 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a common interface for model fitting, prediction, performance assessment, and presentation of results. Supports predictive modeling of numerical, categorical, and censored time-to-event outcomes and resample (bootstrap and cross-validation) estimation of model performance.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 1.3.0 dated 2019-04-23 and 1.4.0 dated 2019-06-08
MachineShop-1.3.0/MachineShop/R/metrics-factor.R |only MachineShop-1.3.0/MachineShop/R/metrics-numeric.R |only MachineShop-1.4.0/MachineShop/DESCRIPTION | 20 MachineShop-1.4.0/MachineShop/MD5 | 110 MachineShop-1.4.0/MachineShop/NAMESPACE | 3 MachineShop-1.4.0/MachineShop/NEWS.md | 21 MachineShop-1.4.0/MachineShop/R/AllClasses.R | 65 MachineShop-1.4.0/MachineShop/R/MLControl.R | 75 MachineShop-1.4.0/MachineShop/R/MLMetric.R | 11 MachineShop-1.4.0/MachineShop/R/MLModel.R | 20 MachineShop-1.4.0/MachineShop/R/ML_CoxModel.R | 2 MachineShop-1.4.0/MachineShop/R/ML_GLMModel.R | 2 MachineShop-1.4.0/MachineShop/R/ML_LMModel.R | 2 MachineShop-1.4.0/MachineShop/R/ML_POLRModel.R | 6 MachineShop-1.4.0/MachineShop/R/ML_SuperModel.R | 41 MachineShop-1.4.0/MachineShop/R/ML_SurvRegModel.R | 2 MachineShop-1.4.0/MachineShop/R/ModelFrame.R | 34 MachineShop-1.4.0/MachineShop/R/ModelRecipe.R | 47 MachineShop-1.4.0/MachineShop/R/append.R | 23 MachineShop-1.4.0/MachineShop/R/confusion.R | 33 MachineShop-1.4.0/MachineShop/R/diff.R | 9 MachineShop-1.4.0/MachineShop/R/extract.R | 11 MachineShop-1.4.0/MachineShop/R/metricinfo.R | 42 MachineShop-1.4.0/MachineShop/R/metrics.R |only MachineShop-1.4.0/MachineShop/R/metrics_factor.R |only MachineShop-1.4.0/MachineShop/R/metrics_numeric.R |only MachineShop-1.4.0/MachineShop/R/modelinfo.R | 27 MachineShop-1.4.0/MachineShop/R/performance.R | 52 MachineShop-1.4.0/MachineShop/R/performance_curve.R | 2 MachineShop-1.4.0/MachineShop/R/plots.R | 100 MachineShop-1.4.0/MachineShop/R/resample.R | 93 MachineShop-1.4.0/MachineShop/R/response.R | 23 MachineShop-1.4.0/MachineShop/R/show.R | 84 MachineShop-1.4.0/MachineShop/R/summary.R | 8 MachineShop-1.4.0/MachineShop/R/survival.R | 6 MachineShop-1.4.0/MachineShop/R/utils.R | 16 MachineShop-1.4.0/MachineShop/R/varimp.R | 14 MachineShop-1.4.0/MachineShop/inst/CITATION | 2 MachineShop-1.4.0/MachineShop/inst/doc/Introduction.R | 403 +- MachineShop-1.4.0/MachineShop/inst/doc/Introduction.Rmd | 687 ++- MachineShop-1.4.0/MachineShop/inst/doc/Introduction.html | 1981 ++++++---- MachineShop-1.4.0/MachineShop/inst/doc/MLModels.html | 18 MachineShop-1.4.0/MachineShop/man/MLControl.Rd | 55 MachineShop-1.4.0/MachineShop/man/MLMetric.Rd | 11 MachineShop-1.4.0/MachineShop/man/MLModel.Rd | 20 MachineShop-1.4.0/MachineShop/man/ModelFrame-methods.Rd | 8 MachineShop-1.4.0/MachineShop/man/confusion.Rd | 9 MachineShop-1.4.0/MachineShop/man/metricinfo.Rd | 25 MachineShop-1.4.0/MachineShop/man/metrics.Rd | 2 MachineShop-1.4.0/MachineShop/man/modelinfo.Rd | 25 MachineShop-1.4.0/MachineShop/man/performance.Rd | 4 MachineShop-1.4.0/MachineShop/man/plot-methods.Rd | 4 MachineShop-1.4.0/MachineShop/man/t.test.Rd | 2 MachineShop-1.4.0/MachineShop/tests/testthat/Rplots.pdf |binary MachineShop-1.4.0/MachineShop/tests/testthat/helper-models.R | 4 MachineShop-1.4.0/MachineShop/tests/testthat/test-model-comparisons.R | 4 MachineShop-1.4.0/MachineShop/vignettes/Introduction.Rmd | 687 ++- MachineShop-1.4.0/MachineShop/vignettes/bibliography.bib | 123 MachineShop-1.4.0/MachineShop/vignettes/setup.R |only 59 files changed, 3300 insertions(+), 1778 deletions(-)