Mon, 10 Jun 2019

Package cimir updated to version 0.3-0 with previous version 0.2-0 dated 2019-03-14

Title: Interface to the CIMIS Web API
Description: Connect to the California Irrigation Management Information System (CIMIS) Web API. See the CIMIS main page <https://cimis.water.ca.gov/> and web API documentation <https://et.water.ca.gov> for more information.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>

Diff between cimir versions 0.2-0 dated 2019-03-14 and 0.3-0 dated 2019-06-10

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Package NNS updated to version 0.4.1 with previous version 0.4.0 dated 2019-05-14

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>

Diff between NNS versions 0.4.0 dated 2019-05-14 and 0.4.1 dated 2019-06-10

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Package extraDistr updated to version 1.8.11 with previous version 1.8.10 dated 2018-10-23

Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function and random generation for a number of univariate and multivariate distributions. This package implements the following distributions: Bernoulli, beta-binomial, beta-negative binomial, beta prime, Bhattacharjee, Birnbaum-Saunders, bivariate normal, bivariate Poisson, categorical, Dirichlet, Dirichlet-multinomial, discrete gamma, discrete Laplace, discrete normal, discrete uniform, discrete Weibull, Frechet, gamma-Poisson, generalized extreme value, Gompertz, generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t, Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy, Laplace, location-scale t, logarithmic, Lomax, multivariate hypergeometric, multinomial, negative hypergeometric, non-standard beta, normal mixture, Poisson mixture, Pareto, power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam, slash, triangular, truncated binomial, truncated normal, truncated Poisson, Tukey lambda, Wald, zero-inflated binomial, zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>

Diff between extraDistr versions 1.8.10 dated 2018-10-23 and 1.8.11 dated 2019-06-10

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Package ubci updated to version 0.0.5 with previous version 0.0.3 dated 2018-08-21

Title: Get Cryptocurrency Related Data by Upbit
Description: Get 'UBCI' & Price from 'Upbit'. 'ubci' is the abbreviation of 'UpBit Crypto Index' and is the name of the index provided by 'upbit'. The 'upbit' is one of the cryptocurrency exchange in Korea. The 'ubci' package is a wrapper around the ticker information and 'ubci' API supplied by 'upbit'.
Author: Chanyub Park [aut, cre] (<https://orcid.org/0000-0001-6474-2570>)
Maintainer: Chanyub Park <mrchypark@gmail.com>

Diff between ubci versions 0.0.3 dated 2018-08-21 and 0.0.5 dated 2019-06-10

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Package provViz updated to version 1.0.5 with previous version 1.0.4 dated 2019-01-08

Title: Provenance Visualizer
Description: Displays provenance graphically for provenance collected by the 'rdt' or 'rdtLite' packages, or other tools providing compatible PROV JSON output. The exact format of the JSON created by 'rdt' and 'rdtLite' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about rdtLite and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.
Author: Emery Boose [ctb], Barbara Lerner [aut, cre], Sofiya Taskova [aut], Miruna Oprescu [aut], Nikki Hoffler [aut], Marios Dardas [aut], Elizabeth Fong [ctb], Thomas Pasquier [ctb], Matthew Lau [ctb], Aaron Ellison [res], Margo Seltzer [res]
Maintainer: Barbara Lerner <blerner@mtholyoke.edu>

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Package jsmodule updated to version 0.9.1 with previous version 0.9.0 dated 2019-06-07

Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>), Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>

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Package CausalKinetiX updated to version 0.2 with previous version 0.1 dated 2019-04-26

Title: Learning Stable Structures in Kinetic Systems
Description: Implementation of 'CausalKinetiX', a framework for learning stable structures in kinetic systems. Apart from the main functions CausalKinetiX() and CausalKinetiX.modelranking() it includes functions to generate data from three simulations models, which can be used to benchmark structure learning methods for linear ordinary differential equation models. A detailed description of the underlying methods as well as details on the examples are given in Pfister, Bauer and Peters (2018) <arXiv:1810.11776>.
Author: Niklas Pfister [aut, cre], Stefan Bauer [aut], Jonas Peters [aut]
Maintainer: Niklas Pfister <niklas.pfister@stat.math.ethz.ch>

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Package wnl updated to version 0.5.1 with previous version 0.5.0 dated 2019-05-10

Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>

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Package TruncatedNormal updated to version 2.0 with previous version 1.0 dated 2015-11-10

Title: Truncated Multivariate Normal and Student Distributions
Description: A collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Author: Zdravko Botev [aut] (<https://orcid.org/0000-0001-9054-3452>), Leo Belzile [aut, cre] (<https://orcid.org/0000-0002-9135-014X>)
Maintainer: Leo Belzile <belzilel@gmail.com>

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Package salesforcer updated to version 0.1.3 with previous version 0.1.2 dated 2018-04-13

Title: An Implementation of 'Salesforce' APIs Using Tidy Principles
Description: Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP, Bulk 1.0, Bulk 2.0, and Metadata) <https://trailhead.salesforce.com/en/content/learn/modules/api_basics/api_basics_overview>. Most all calls from these APIs are supported as they use CSV, XML or JSON data that can be parsed into R data structures. For more details please see the 'Salesforce' API documentation and this package's website <https://stevenmmortimer.github.io/salesforcer/> for more information, documentation, and examples.
Author: Steven M. Mortimer [aut, cre], Takekatsu Hiramura [ctb], Jennifer Bryan [ctb, cph], Joanna Zhao [ctb, cph]
Maintainer: Steven M. Mortimer <reportmort@gmail.com>

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Package matrixTests updated to version 0.1.3 with previous version 0.1.2 dated 2019-04-05

Title: Fast Statistical Hypothesis Tests on Rows and Columns of Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices. The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use, 3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>

Diff between matrixTests versions 0.1.2 dated 2019-04-05 and 0.1.3 dated 2019-06-10

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Package rubias updated to version 0.3.0 with previous version 0.2.0 dated 2019-02-02

Title: Bayesian Inference from the Conditional Genetic Stock Identification Model
Description: Implements Bayesian inference for the conditional genetic stock identification model. It allows inference of mixed fisheries and also simulation of mixtures to predict accuracy. A full description of the underlying methods is available in a recently published article in the Canadian Journal of Fisheries and Aquatic Sciences: <doi.org/10.1139/cjfas-2018-0016>.
Author: Eric C. Anderson [aut, cre], Ben Moran [aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>

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Package RSuite updated to version 0.37-253 with previous version 0.36-252 dated 2019-03-07

Title: Supports Developing, Building and Deploying R Solution
Description: Supports safe and reproducible solutions development in R. It will help you with environment separation per project, dependency management, local packages creation and preparing deployment packs for your solutions.
Author: Walerian Sokolowski [aut, cre], Wit Jakuczun [aut], Yulia Yakimechko [aut], Mateusz Kalinowski [aut], Ryszard Szymanski [aut], Alfonso Reyes [ctb], WLOG Solutions [cph], R Consortium [ctb] (Definitions of system requirements are taken from sysreqsdb project.)
Maintainer: Walerian Sokolowski <rsuite@wlogsolutions.com>

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Package ijtiff updated to version 2.0.0 with previous version 1.5.1 dated 2019-05-16

Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the only such package with read and write support for TIFF files with floating point (real-numbered) pixels, and the only package that can correctly import TIFF files that were saved from 'ImageJ' and write TIFF files than can be correctly read by 'ImageJ' <https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>), Kent Johnson [aut], Simon Urbanek [ctb], Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>), Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>), Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

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Package emmeans updated to version 1.3.5 with previous version 1.3.4 dated 2019-04-21

Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays. Least-squares means are discussed, and the term "estimated marginal means" is suggested, in Searle, Speed, and Milliken (1980) Population marginal means in the linear model: An alternative to least squares means, The American Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph], Henrik Singmann [ctb], Jonathon Love [ctb], Paul Buerkner [ctb], Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>

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Package tractor.base updated to version 3.3.2 with previous version 3.3.0 dated 2018-12-12

Title: Read, Manipulate and Visualise Magnetic Resonance Images
Description: Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>

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Package tsibble updated to version 0.8.2 with previous version 0.8.1 dated 2019-06-03

Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store and manage temporal data in a data-centric format, which is built on top of the 'tibble'. The 'tsibble' aims at easily manipulating and analysing temporal data, including counting and filling in time gaps, aggregate over calendar periods, performing rolling window calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>), Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>), Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>), Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>)
Maintainer: Earo Wang <earo.wang@gmail.com>

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Package sbscrapeR (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-04 1.0.0

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Package KFAS updated to version 1.3.7 with previous version 1.3.6 dated 2019-05-29

Title: Kalman Filter and Smoother for Exponential Family State Space Models
Description: State space modelling is an efficient and flexible framework for statistical inference of a broad class of time series and other data. KFAS includes computationally efficient functions for Kalman filtering, smoothing, forecasting, and simulation of multivariate exponential family state space models, with observations from Gaussian, Poisson, binomial, negative binomial, and gamma distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>

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Package trajr updated to version 1.3.0 with previous version 1.1.0 dated 2018-05-10

Title: Animal Trajectory Analysis
Description: A toolbox to assist with statistical analysis of 2-dimensional animal trajectories. It provides simple access to algorithms for calculating and assessing a variety of characteristics such as speed and acceleration, as well as multiple measures of straightness or tortuosity. McLean & Skowron Volponi (2018) <doi:10.1111/eth.12739>.
Author: Jim McLean [aut, cre]
Maintainer: Jim McLean <jim_mclean@optusnet.com.au>

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Package qte updated to version 1.3.0 with previous version 1.2.2 dated 2018-04-30

Title: Quantile Treatment Effects
Description: Provides several methods for computing the Quantile Treatment Effect (QTE) and Quantile Treatment Effect on the Treated (QTT). The main cases covered are (i) Treatment is randomly assigned, (ii) Treatment is as good as randomly assigned after conditioning on some covariates (also called conditional independence or selection on observables) using the methods developed in Firpo (2007) <doi:10.1111/j.1468-0262.2007.00738.x>, (iii) Identification is based on a Difference in Differences assumption (several varieties are available in the package e.g. Athey and Imbens (2006) <doi:10.1111/j.1468-0262.2006.00668.x> Callaway and Li (2019) <https://ssrn.com/abstract=3013341>, Callaway, Li, and Oka (2018) <doi:10.1016/j.jeconom.2018.06.008>).
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@temple.edu>

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Package ergm updated to version 3.10.4 with previous version 3.10.1 dated 2019-05-14

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>), Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb], Skye Bender-deMoll [ctb], Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

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