Title: Interface to the CIMIS Web API
Description: Connect to the California Irrigation Management
Information System (CIMIS) Web API. See the CIMIS main page
<https://cimis.water.ca.gov/> and web API documentation
<https://et.water.ca.gov> for more information.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>
Diff between cimir versions 0.2-0 dated 2019-03-14 and 0.3-0 dated 2019-06-10
cimir-0.2-0/cimir/R/deprecated.r |only cimir-0.2-0/cimir/man/cimir-deprecated.Rd |only cimir-0.3-0/cimir/DESCRIPTION | 8 - cimir-0.3-0/cimir/MD5 | 33 ++-- cimir-0.3-0/cimir/NAMESPACE | 22 ++- cimir-0.3-0/cimir/NEWS.md |only cimir-0.3-0/cimir/R/defunct.r |only cimir-0.3-0/cimir/R/package.r | 1 cimir-0.3-0/cimir/R/query.r | 34 ++-- cimir-0.3-0/cimir/R/sysdata.rda |binary cimir-0.3-0/cimir/R/util.r | 152 +++++++++++++++++++++- cimir-0.3-0/cimir/build/vignette.rds |binary cimir-0.3-0/cimir/inst/doc/quickstart.Rmd | 8 - cimir-0.3-0/cimir/inst/doc/quickstart.html | 13 + cimir-0.3-0/cimir/man/cimir-defunct.Rd |only cimir-0.3-0/cimir/man/cimis_compass_to_degrees.Rd |only cimir-0.3-0/cimir/man/cimis_format_location.Rd |only cimir-0.3-0/cimir/man/cimis_split_query.Rd |only cimir-0.3-0/cimir/man/cimis_to_datetime.Rd | 5 cimir-0.3-0/cimir/man/dataitems.Rd | 2 cimir-0.3-0/cimir/man/figures |only cimir-0.3-0/cimir/vignettes/quickstart.Rmd | 8 - 22 files changed, 229 insertions(+), 57 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.4.0 dated 2019-05-14 and 0.4.1 dated 2019-06-10
DESCRIPTION | 9 MD5 | 170 ++-- NAMESPACE | 2 R/ANOVA.R | 49 - R/ARMA.R | 270 ++---- R/ARMA_optim.R | 336 +++++--- R/Binary_ANOVA.R | 95 +- R/Boost.R | 384 ++++++--- R/Causal_matrix.R | 44 - R/Causation.R | 126 +-- R/Co_PM_cor.R | 77 - R/Correlation.R | 9 R/Dependence.R | 71 - R/Dependence_base.R | 114 +- R/Dependence_matrix.R | 22 R/FSD.R | 17 R/Internal_Functions.R |only R/LPM_UPM_VaR.R | 7 R/Multivariate_Regression.R | 390 ++++----- R/NNS_Distance.R |only R/NNS_term_matrix.R | 47 - R/Normalization.R | 61 - R/Numerical_Differentiation.R | 234 ++--- R/Partial_Moments.R | 215 ++--- R/Partition_Map.R | 473 ++++++----- R/Regression.R | 784 +++++++++---------- R/SD_Efficient_Set.R | 59 - R/SSD.R | 25 R/Seasonality_Test.R | 86 +- R/Stack.R | 273 +++--- R/TSD.R | 27 R/Uni_Causation.R | 104 +- R/Uni_SD_Routines.R | 51 - R/dy_d_wrt.R | 5 R/dy_dx.R | 87 +- R/gvload.R | 6 inst/doc/NNSvignette_Classification.R | 5 inst/doc/NNSvignette_Classification.Rmd | 5 inst/doc/NNSvignette_Classification.html | 7 inst/doc/NNSvignette_Clustering_and_Regression.R | 12 inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 12 inst/doc/NNSvignette_Clustering_and_Regression.html | 18 inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 8 inst/doc/NNSvignette_Correlation_and_Dependence.html | 20 inst/doc/NNSvignette_Forecasting.R | 24 inst/doc/NNSvignette_Forecasting.Rmd | 54 - inst/doc/NNSvignette_Forecasting.html | 63 - inst/doc/NNSvignette_Partial_Moments.html | 139 ++- man/Co.LPM.Rd | 3 man/Co.UPM.Rd | 5 man/D.LPM.Rd | 3 man/D.UPM.Rd | 3 man/LPM.Rd | 5 man/LPM.VaR.Rd | 3 man/LPM.ratio.Rd | 6 man/NNS.ANOVA.Rd | 3 man/NNS.ARMA.Rd | 13 man/NNS.ARMA.optim.Rd | 16 man/NNS.FSD.Rd | 2 man/NNS.FSD.uni.Rd | 2 man/NNS.PDF.Rd | 5 man/NNS.SD.efficient.set.Rd | 2 man/NNS.SSD.Rd | 2 man/NNS.TSD.Rd | 2 man/NNS.boost.Rd | 27 man/NNS.caus.Rd | 3 man/NNS.cor.Rd | 2 man/NNS.cor.hd.Rd | 2 man/NNS.dep.Rd | 2 man/NNS.dep.base.Rd |only man/NNS.diff.Rd | 3 man/NNS.distance.Rd |only man/NNS.norm.Rd | 1 man/NNS.part.Rd | 10 man/NNS.reg.Rd | 14 man/NNS.seas.Rd | 1 man/NNS.stack.Rd | 5 man/NNS.term.matrix.Rd | 3 man/PM.matrix.Rd | 7 man/UPM.Rd | 6 man/UPM.VaR.Rd | 1 man/UPM.ratio.Rd | 7 man/dy.d_.Rd | 7 man/dy.dx.Rd | 2 vignettes/NNSvignette_Classification.Rmd | 5 vignettes/NNSvignette_Clustering_and_Regression.Rmd | 12 vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 8 vignettes/NNSvignette_Forecasting.Rmd | 54 - 88 files changed, 2783 insertions(+), 2570 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.10 dated 2018-10-23 and 1.8.11 dated 2019-06-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ src/frechet-distribution.cpp | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Get Cryptocurrency Related Data by Upbit
Description: Get 'UBCI' & Price from 'Upbit'.
'ubci' is the abbreviation of 'UpBit Crypto Index' and is the name of the index provided by 'upbit'.
The 'upbit' is one of the cryptocurrency exchange in Korea. The 'ubci' package is a wrapper around the ticker
information and 'ubci' API supplied by 'upbit'.
Author: Chanyub Park [aut, cre] (<https://orcid.org/0000-0001-6474-2570>)
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between ubci versions 0.0.3 dated 2018-08-21 and 0.0.5 dated 2019-06-10
DESCRIPTION | 16 +- MD5 | 14 - NEWS.md | 7 R/ubci_index.R | 2 README.md | 311 +++++++++++++++++++-------------------- man/ubci-package.Rd | 8 - tests/testthat/test-ubci_get.R | 8 - tests/testthat/test-ubci_index.R | 8 - 8 files changed, 190 insertions(+), 184 deletions(-)
Title: Provenance Visualizer
Description: Displays provenance graphically for provenance collected by the 'rdt' or
'rdtLite' packages, or other tools providing compatible PROV JSON output. The exact
format of the JSON created by 'rdt' and 'rdtLite' is described in
<https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about
rdtLite and associated tools is available at <https://github.com/End-to-end-provenance/>
and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect
Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.
Author: Emery Boose [ctb],
Barbara Lerner [aut, cre],
Sofiya Taskova [aut],
Miruna Oprescu [aut],
Nikki Hoffler [aut],
Marios Dardas [aut],
Elizabeth Fong [ctb],
Thomas Pasquier [ctb],
Matthew Lau [ctb],
Aaron Ellison [res],
Margo Seltzer [res]
Maintainer: Barbara Lerner <blerner@mtholyoke.edu>
Diff between provViz versions 1.0.4 dated 2019-01-08 and 1.0.5 dated 2019-06-10
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 10 ++++++++++ R/visprov.R | 7 +++++-- README.md | 4 ++-- inst/java/DDGExplorer.jar |binary java/README | 2 +- 7 files changed, 29 insertions(+), 16 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 0.9.0 dated 2019-06-07 and 0.9.1 dated 2019-06-10
DESCRIPTION | 8 +++--- MD5 | 30 +++++++++++------------ NEWS.md | 13 ++++++++++ R/FilePsInput.R | 13 ++++++---- R/FileRepeatedInput.R | 11 +++++--- R/FileSurveyInput.R | 11 +++++--- R/coxph.R | 13 ++++++---- R/csvFileInput.R | 11 +++++--- R/regress.R | 62 ++++++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/jsmodule.html | 4 +-- man/coxModule.Rd | 4 ++- man/logisticModule.Rd | 4 ++- man/logisticModule2.Rd | 4 ++- man/regressModule.Rd | 4 ++- man/regressModule2.Rd | 4 ++- 16 files changed, 124 insertions(+), 72 deletions(-)
Title: Learning Stable Structures in Kinetic Systems
Description: Implementation of 'CausalKinetiX', a framework for learning stable structures in kinetic systems. Apart from the main functions CausalKinetiX() and CausalKinetiX.modelranking() it includes functions to generate data from three simulations models, which can be used to benchmark structure learning methods for linear ordinary differential equation models. A detailed description of the underlying methods as well as details on the examples are given in Pfister, Bauer and Peters (2018) <arXiv:1810.11776>.
Author: Niklas Pfister [aut, cre],
Stefan Bauer [aut],
Jonas Peters [aut]
Maintainer: Niklas Pfister <niklas.pfister@stat.math.ethz.ch>
Diff between CausalKinetiX versions 0.1 dated 2019-04-26 and 0.2 dated 2019-06-10
DESCRIPTION | 8 +-- MD5 | 18 +++---- R/CausalKinetiX.R | 16 +++++- R/CausalKinetiX.modelranking.R | 91 ++++++++++++++++++++++++++------------ R/generate.data.hidden.R | 6 -- R/ode.solver.R | 35 +++++++------- R/utils.R | 47 ++++++++++++++++--- man/CausalKinetiX.Rd | 3 - man/CausalKinetiX.modelranking.Rd | 7 +- man/ode.solver.Rd | 18 ++----- 10 files changed, 159 insertions(+), 90 deletions(-)
Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.5.0 dated 2019-05-10 and 0.5.1 dated 2019-06-10
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++----------- R/ExpandDH.R | 13 +++++++++++-- R/nComp.R | 2 +- R/sysdata.rda |binary inst/NEWS.Rd | 6 ++++++ inst/doc/Compartment-vignette.pdf |only inst/doc/wnl-manual.pdf |binary man/DAT.Rd | 2 +- man/ExpandDH.Rd | 5 ++++- man/SolComp2.Rd | 2 +- man/SolComp3.Rd | 2 +- man/nComp.Rd | 5 +++-- 13 files changed, 43 insertions(+), 23 deletions(-)
Title: Truncated Multivariate Normal and Student Distributions
Description: A collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Author: Zdravko Botev [aut] (<https://orcid.org/0000-0001-9054-3452>),
Leo Belzile [aut, cre] (<https://orcid.org/0000-0002-9135-014X>)
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between TruncatedNormal versions 1.0 dated 2015-11-10 and 2.0 dated 2019-06-10
TruncatedNormal-1.0/TruncatedNormal/R/Phinv.R |only TruncatedNormal-1.0/TruncatedNormal/R/lnNpr.R |only TruncatedNormal-1.0/TruncatedNormal/R/nleq.R |only TruncatedNormal-2.0/TruncatedNormal/DESCRIPTION | 28 - TruncatedNormal-2.0/TruncatedNormal/MD5 | 95 +++- TruncatedNormal-2.0/TruncatedNormal/NAMESPACE | 45 +- TruncatedNormal-2.0/TruncatedNormal/NEWS |only TruncatedNormal-2.0/TruncatedNormal/R/RcppExports.R |only TruncatedNormal-2.0/TruncatedNormal/R/TruncatedNormal-internal.R | 128 ----- TruncatedNormal-2.0/TruncatedNormal/R/cases.R | 43 + TruncatedNormal-2.0/TruncatedNormal/R/cholperm.R | 98 +--- TruncatedNormal-2.0/TruncatedNormal/R/gradpsi.R | 94 ++-- TruncatedNormal-2.0/TruncatedNormal/R/gradpsiT.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvNcdf.R | 125 +++-- TruncatedNormal-2.0/TruncatedNormal/R/mvNqmc.R | 147 ++++-- TruncatedNormal-2.0/TruncatedNormal/R/mvTcdf.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvTqmc.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvnprqmc.R | 71 +-- TruncatedNormal-2.0/TruncatedNormal/R/mvrandn.R | 218 +++++++--- TruncatedNormal-2.0/TruncatedNormal/R/mvrandt.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvtpr.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvtprqmc.R |only TruncatedNormal-2.0/TruncatedNormal/R/mvtrnd.R |only TruncatedNormal-2.0/TruncatedNormal/R/newton.R | 2 TruncatedNormal-2.0/TruncatedNormal/R/norminvp.R | 83 ++- TruncatedNormal-2.0/TruncatedNormal/R/normq.R | 2 TruncatedNormal-2.0/TruncatedNormal/R/psy.R | 18 TruncatedNormal-2.0/TruncatedNormal/R/psyT.R |only TruncatedNormal-2.0/TruncatedNormal/R/tmvnorm.R |only TruncatedNormal-2.0/TruncatedNormal/R/tmvt.R |only TruncatedNormal-2.0/TruncatedNormal/R/tnorm.R |only TruncatedNormal-2.0/TruncatedNormal/R/trandn.R | 93 ++-- TruncatedNormal-2.0/TruncatedNormal/R/tregress.R |only TruncatedNormal-2.0/TruncatedNormal/build |only TruncatedNormal-2.0/TruncatedNormal/inst |only TruncatedNormal-2.0/TruncatedNormal/man/Phinv.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/TruncatedNormal-package.Rd | 117 +---- TruncatedNormal-2.0/TruncatedNormal/man/cholperm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dot-cholpermGB.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dot-cholpermGGE.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dot-dmvnorm_arma.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dot-dmvt_arma.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dtmvnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/dtmvt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/lnNpr.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/lupus.Rd | 70 +-- TruncatedNormal-2.0/TruncatedNormal/man/mvNcdf.Rd | 136 ++---- TruncatedNormal-2.0/TruncatedNormal/man/mvNqmc.Rd | 147 +++--- TruncatedNormal-2.0/TruncatedNormal/man/mvTcdf.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/mvTqmc.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/mvrandn.Rd | 195 ++++---- TruncatedNormal-2.0/TruncatedNormal/man/mvrandt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/norminvp.Rd | 116 ++--- TruncatedNormal-2.0/TruncatedNormal/man/pmvnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/pmvt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/ptmvnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/ptmvt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/qtnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/rtmvnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/rtmvt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/rtnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/tmvnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/tmvt.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/tnorm.Rd |only TruncatedNormal-2.0/TruncatedNormal/man/trandn.Rd | 106 ++-- TruncatedNormal-2.0/TruncatedNormal/man/tregress.Rd |only TruncatedNormal-2.0/TruncatedNormal/src |only TruncatedNormal-2.0/TruncatedNormal/vignettes |only 68 files changed, 1116 insertions(+), 1061 deletions(-)
More information about TruncatedNormal at CRAN
Permanent link
Title: An Implementation of 'Salesforce' APIs Using Tidy Principles
Description: Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP,
Bulk 1.0, Bulk 2.0, and Metadata) <https://trailhead.salesforce.com/en/content/learn/modules/api_basics/api_basics_overview>.
Most all calls from these APIs are supported as they use CSV, XML or JSON data
that can be parsed into R data structures. For more details please see the
'Salesforce' API documentation and this package's website
<https://stevenmmortimer.github.io/salesforcer/> for more information,
documentation, and examples.
Author: Steven M. Mortimer [aut, cre],
Takekatsu Hiramura [ctb],
Jennifer Bryan [ctb, cph],
Joanna Zhao [ctb, cph]
Maintainer: Steven M. Mortimer <reportmort@gmail.com>
Diff between salesforcer versions 0.1.2 dated 2018-04-13 and 0.1.3 dated 2019-06-10
DESCRIPTION | 35 - MD5 | 248 ++++---- NAMESPACE | 34 + NEWS.md | 51 + R/auth.R | 4 R/bulk-operation.R | 454 ++++++++++----- R/bulk-query.R | 130 ++-- R/compatibility.R | 34 - R/create-metadata.R | 54 + R/create.R | 201 ++++-- R/delete-metadata.R | 47 + R/delete.R | 153 +++-- R/describe-metadata.R | 14 R/describe.R | 43 - R/endpoints-bulk.R | 20 R/list-metadata.R | 14 R/query.R | 186 +++--- R/read-metadata.R | 97 +++ R/rename-metadata.R | 14 R/retrieve-metadata.R | 14 R/retrieve.R | 63 +- R/salesforcer.R | 2 R/search.R | 78 +- R/update-metadata.R | 44 + R/update.R | 191 ++++-- R/upsert-metadata.R | 46 + R/upsert.R | 186 +++--- R/utils-control.R |only R/utils-httr.R | 6 R/utils-org.R | 795 ++++++++++++++++++++++++++- R/utils-xml.R | 136 ++-- R/utils.R | 154 ++++- R/zzz.R | 2 README.md | 371 +++++++++--- build/vignette.rds |binary inst/doc/getting-started.R | 4 inst/doc/getting-started.Rmd | 7 inst/doc/getting-started.html | 464 +++++++++++---- inst/doc/passing-control-args.R |only inst/doc/passing-control-args.Rmd |only inst/doc/passing-control-args.html |only inst/doc/transitioning-from-RForcecom.R | 11 inst/doc/transitioning-from-RForcecom.Rmd | 19 inst/doc/transitioning-from-RForcecom.html | 505 ++++++++++++----- inst/doc/working-with-bulk-api.R | 2 inst/doc/working-with-bulk-api.Rmd | 4 inst/doc/working-with-bulk-api.html | 404 ++++++++++--- man/accepted_controls_by_api.Rd |only man/accepted_controls_by_operation.Rd |only man/build_metadata_xml_from_list.Rd | 8 man/build_soap_xml_from_list.Rd | 8 man/collapse_list_with_dupe_names.Rd |only man/filter_valid_controls.Rd |only man/format_headers_for_verbose.Rd |only man/make_bulk_end_job_generic_url.Rd | 3 man/make_bulk_get_all_jobs_url.Rd |only man/make_bulk_get_job_url.Rd | 4 man/make_parameterized_search_url.Rd | 1 man/make_verbose_httr_message.Rd |only man/merge_null_to_na.Rd |only man/parameterized_search_control.Rd | 6 man/remove_empty_linked_object_cols.Rd |only man/return_matching_controls.Rd |only man/rforcecom.getObjectDescription.Rd |only man/rforcecom.retrieve.Rd | 5 man/sf_abort_job_bulk.Rd | 7 man/sf_auth.Rd | 2 man/sf_batch_details_bulk.Rd | 9 man/sf_batch_status_bulk.Rd | 4 man/sf_bulk_operation.Rd | 20 man/sf_close_job_bulk.Rd | 4 man/sf_control.Rd |only man/sf_create.Rd | 36 - man/sf_create_batches_bulk.Rd | 4 man/sf_create_bulk_v1.Rd | 3 man/sf_create_bulk_v2.Rd | 3 man/sf_create_job_bulk.Rd | 38 - man/sf_create_job_bulk_v1.Rd | 9 man/sf_create_job_bulk_v2.Rd | 8 man/sf_create_metadata.Rd | 14 man/sf_create_rest.Rd | 3 man/sf_create_soap.Rd | 3 man/sf_delete.Rd | 37 - man/sf_delete_job_bulk.Rd | 4 man/sf_delete_metadata.Rd | 9 man/sf_describe_object_fields.Rd |only man/sf_describe_objects.Rd | 14 man/sf_download_attachment.Rd |only man/sf_empty_recycle_bin.Rd |only man/sf_end_job_bulk.Rd | 8 man/sf_find_duplicates.Rd |only man/sf_find_duplicates_by_id.Rd |only man/sf_get_all_jobs_bulk.Rd |only man/sf_get_deleted.Rd |only man/sf_get_job_bulk.Rd | 6 man/sf_get_job_records_bulk.Rd | 4 man/sf_get_updated.Rd |only man/sf_job_batches_bulk.Rd | 4 man/sf_merge.Rd |only man/sf_query.Rd | 34 - man/sf_query_bulk.Rd | 31 - man/sf_query_result_bulk.Rd | 20 man/sf_read_metadata.Rd | 2 man/sf_rename_metadata.Rd | 3 man/sf_reset_password.Rd |only man/sf_retrieve.Rd | 14 man/sf_search.Rd | 16 man/sf_set_password.Rd |only man/sf_submit_query_bulk.Rd | 10 man/sf_undelete.Rd |only man/sf_update.Rd | 38 - man/sf_update_bulk_v1.Rd | 3 man/sf_update_bulk_v2.Rd | 3 man/sf_update_metadata.Rd | 9 man/sf_update_rest.Rd | 3 man/sf_update_soap.Rd | 3 man/sf_upload_complete_bulk.Rd | 7 man/sf_upsert.Rd | 18 man/sf_upsert_bulk_v1.Rd | 4 man/sf_upsert_bulk_v2.Rd | 4 man/sf_upsert_metadata.Rd | 9 man/sf_upsert_rest.Rd | 4 man/sf_upsert_soap.Rd | 4 man/sf_user_info.Rd | 8 tests/testthat/salesforcer.tar |binary tests/testthat/salesforcer.tar.enc |only tests/testthat/salesforcer_test_settings.rds |binary tests/testthat/salesforcer_token.rds |binary tests/testthat/test-bulk.R | 57 + tests/testthat/test-compatibility.R | 58 + tests/testthat/test-metadata.R | 23 tests/testthat/test-org-utils.R | 102 +++ tests/testthat/test-rest.R | 12 tests/testthat/test-search.R | 6 tests/testthat/test-soap.R | 2 tests/testthat/test-utils.R | 12 vignettes/getting-started.Rmd | 7 vignettes/passing-control-args.Rmd |only vignettes/transitioning-from-RForcecom.Rmd | 19 vignettes/working-with-bulk-api.Rmd | 4 140 files changed, 4524 insertions(+), 1654 deletions(-)
Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.1.2 dated 2019-04-05 and 0.1.3 dated 2019-06-10
DESCRIPTION | 6 MD5 | 33 ++-- NAMESPACE | 6 NEWS | 16 + R/cor.R | 2 R/ievora.R | 4 R/ttest.R | 160 +++++++++---------- R/utils.asserts.R | 18 ++ R/utils.general.R | 13 + R/utils.tests.R | 126 +++++++++++++++ R/wilcox.R |only man/ttest.Rd | 22 +- man/wilcoxon.Rd |only tests/testthat/test-correct-wilcoxon-onesample.R |only tests/testthat/test-correct-wilcoxon-paired.R |only tests/testthat/test-correct-wilcoxon-twosample.R |only tests/testthat/test-parameters-main-errors.R | 43 +++++ tests/testthat/test-parameters-optional-errors.R | 186 ++++++++++++++++++++++- tests/testthat/test-parameters-special-cases.R | 32 +++ tests/testthat/test-result-rownames.R | 15 + 20 files changed, 560 insertions(+), 122 deletions(-)
Title: Bayesian Inference from the Conditional Genetic Stock
Identification Model
Description: Implements Bayesian inference for the conditional genetic
stock identification model. It allows inference of mixed fisheries and also
simulation of mixtures to predict accuracy. A full description of the underlying
methods is available in a recently published article in the
Canadian Journal of Fisheries and Aquatic Sciences: <doi.org/10.1139/cjfas-2018-0016>.
Author: Eric C. Anderson [aut, cre],
Ben Moran [aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Diff between rubias versions 0.2.0 dated 2019-02-02 and 0.3.0 dated 2019-06-10
DESCRIPTION | 16 MD5 | 54 - NAMESPACE | 2 NEWS.md | 10 R/RcppExports.R | 44 + R/infer_mixture.R | 178 +++- R/rubias.R | 1 README.md | 245 +++--- build/vignette.rds |binary inst/doc/rubias-fully-bayesian.R |only inst/doc/rubias-fully-bayesian.Rmd |only inst/doc/rubias-fully-bayesian.html |only inst/doc/rubias-overview.R | 8 inst/doc/rubias-overview.Rmd | 33 inst/doc/rubias-overview.html | 863 ++++++++++++------------ inst/doc/rubias-underlying-data-structures.html | 33 man/gsi_mcmc_fb.Rd |only man/infer_mixture.Rd | 27 src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 18 src/macros.h | 2 src/rcpp_fullBayes_mcmc.cpp |only tools/boxplot-pofz-gc-sim-1.png |binary tools/boxplot-pofz-indiv-sim-1.png |binary tools/plot-6-1.png |binary tools/plot-top6-1.png |binary tools/plot-top6-n-1.png |binary tools/unnamed-chunk-6-1.png |binary tools/z-score-density-1.png |binary vignettes/rubias-fully-bayesian.Rmd |only vignettes/rubias-overview.Rmd | 33 32 files changed, 949 insertions(+), 618 deletions(-)
Title: Supports Developing, Building and Deploying R Solution
Description: Supports safe and reproducible solutions development in R.
It will help you with environment separation per project,
dependency management, local packages creation and preparing
deployment packs for your solutions.
Author: Walerian Sokolowski [aut, cre],
Wit Jakuczun [aut],
Yulia Yakimechko [aut],
Mateusz Kalinowski [aut],
Ryszard Szymanski [aut],
Alfonso Reyes [ctb],
WLOG Solutions [cph],
R Consortium [ctb] (Definitions of system requirements are taken from
sysreqsdb project.)
Maintainer: Walerian Sokolowski <rsuite@wlogsolutions.com>
Diff between RSuite versions 0.36-252 dated 2019-03-07 and 0.37-253 dated 2019-06-10
DESCRIPTION | 17 MD5 | 167 +++--- NAMESPACE | 1 NEWS.md | 17 R/09_api_inst.R |only R/50_pkg_deployment.R | 4 R/53_repositories.R | 27 - R/54_pkg_document.R | 64 +- R/56_sysreqs_utils.R | 98 +++ R/57_sysreqs_recipies.R | 294 +++++++---- R/packages_import.R | 8 build/vignette.rds |binary inst/doc/RSuite-vignette.html | 872 ++++++++++++---------------------- inst/extdata/builtin_templates.zip |binary inst/extdata/installer.sh |only inst/extdata/sysreqs/db/conda.json | 3 inst/extdata/sysreqs/db/gnumake.json | 2 inst/extdata/sysreqs/db/python.json | 2 man/RSuite.Rd | 10 man/ci_adapter_create_base.Rd | 1 man/ci_adapter_get_version.Rd | 1 man/ci_adapter_is_building.Rd | 1 man/inst_wrap_zip.Rd |only man/pkgzip_build_bioc_package.Rd | 1 man/pkgzip_build_ext_packages.Rd | 6 man/pkgzip_build_github_package.Rd | 1 man/pkgzip_build_package_files.Rd | 1 man/pkgzip_build_prj_packages.Rd | 1 man/prj_build.Rd | 5 man/prj_clean_deps.Rd | 1 man/prj_config_set_repo_adapters.Rd | 1 man/prj_config_set_rversion.Rd | 1 man/prj_init.Rd | 1 man/prj_install_deps.Rd | 1 man/prj_load.Rd | 1 man/prj_lock_env.Rd | 1 man/prj_pack.Rd | 5 man/prj_start.Rd | 1 man/prj_start_package.Rd | 4 man/prj_unload.Rd | 1 man/prj_zip.Rd | 1 man/rc_adapter_create_base.Rd | 1 man/rc_adapter_get_version.Rd | 1 man/rc_adapter_is_under_control.Rd | 1 man/rc_adapter_pkg_struct_add.Rd | 1 man/rc_adapter_prj_struct_add.Rd | 1 man/rc_adapter_remove_admins.Rd | 1 man/repo_adapter_create_base.Rd | 1 man/repo_adapter_create_manager.Rd | 1 man/repo_adapter_get_info.Rd | 1 man/repo_adapter_get_path.Rd | 1 man/repo_manager_destroy.Rd | 1 man/repo_manager_get_info.Rd | 1 man/repo_manager_init.Rd | 1 man/repo_manager_remove.Rd | 1 man/repo_manager_upload.Rd | 1 man/repo_mng_init.Rd | 1 man/repo_mng_list.Rd | 4 man/repo_mng_remove.Rd | 1 man/repo_mng_start.Rd | 1 man/repo_mng_stop.Rd | 1 man/repo_upload_bioc_package.Rd | 1 man/repo_upload_ext_packages.Rd | 1 man/repo_upload_github_package.Rd | 1 man/repo_upload_package_files.Rd | 1 man/repo_upload_pkgzip.Rd | 1 man/repo_upload_prj_packages.Rd | 1 man/rsuite_check_version.Rd | 1 man/rsuite_getLogger.Rd | 1 man/rsuite_get_ci_adapter_names.Rd | 1 man/rsuite_get_os_info.Rd | 1 man/rsuite_get_rc_adapter_names.Rd | 1 man/rsuite_get_repo_adapter_names.Rd | 1 man/rsuite_register_ci_adapter.Rd | 1 man/rsuite_register_rc_adapter.Rd | 1 man/rsuite_register_repo_adapter.Rd | 1 man/rsuite_unregister_ci_adapter.Rd | 1 man/rsuite_unregister_rc_adapter.Rd | 1 man/rsuite_unregister_repo_adapter.Rd | 1 man/rsuite_update.Rd | 1 man/sysreqs_check.Rd | 1 man/sysreqs_collect.Rd | 1 man/sysreqs_install.Rd | 1 man/tmpl_list_registered.Rd | 1 man/tmpl_register.Rd | 1 man/tmpl_start.Rd | 1 86 files changed, 883 insertions(+), 788 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the only such
package with read and write support for TIFF files with floating point
(real-numbered) pixels, and the only package that can correctly import TIFF
files that were saved from 'ImageJ' and write TIFF files than can be
correctly read by 'ImageJ' <https://imagej.nih.gov/ij/>.
Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 1.5.1 dated 2019-05-16 and 2.0.0 dated 2019-06-10
ijtiff-1.5.1/ijtiff/man/count_imgs.Rd |only ijtiff-1.5.1/ijtiff/man/get_tiff_tags_reference.Rd |only ijtiff-1.5.1/ijtiff/tests/testthat/test_graphics.R |only ijtiff-1.5.1/ijtiff/tests/testthat/test_io.R |only ijtiff-1.5.1/ijtiff/tests/testthat/test_utils.R |only ijtiff-2.0.0/ijtiff/DESCRIPTION | 23 ijtiff-2.0.0/ijtiff/MD5 | 76 +- ijtiff-2.0.0/ijtiff/NAMESPACE | 6 ijtiff-2.0.0/ijtiff/NEWS.md | 14 ijtiff-2.0.0/ijtiff/R/class_constructors.R | 8 ijtiff-2.0.0/ijtiff/R/graphics.R | 9 ijtiff-2.0.0/ijtiff/R/read.R | 183 +---- ijtiff-2.0.0/ijtiff/R/text_io.R | 7 ijtiff-2.0.0/ijtiff/R/utils.R | 340 +++++++--- ijtiff-2.0.0/ijtiff/R/write.R | 29 ijtiff-2.0.0/ijtiff/README.md | 8 ijtiff-2.0.0/ijtiff/inst/WORDLIST | 4 ijtiff-2.0.0/ijtiff/inst/doc/reading-and-writing-images.R | 22 ijtiff-2.0.0/ijtiff/inst/doc/reading-and-writing-images.Rmd | 38 - ijtiff-2.0.0/ijtiff/inst/doc/reading-and-writing-images.html | 92 +- ijtiff-2.0.0/ijtiff/inst/doc/text-images.html | 4 ijtiff-2.0.0/ijtiff/inst/doc/the-imagej-problem.html | 8 ijtiff-2.0.0/ijtiff/man/count_frames.Rd |only ijtiff-2.0.0/ijtiff/man/display.Rd | 9 ijtiff-2.0.0/ijtiff/man/ijtiff_img.Rd | 8 ijtiff-2.0.0/ijtiff/man/linescan-conversion.Rd | 1 ijtiff-2.0.0/ijtiff/man/read_tags.Rd | 21 ijtiff-2.0.0/ijtiff/man/read_tif.Rd | 14 ijtiff-2.0.0/ijtiff/man/text-image-io.Rd | 3 ijtiff-2.0.0/ijtiff/man/tif_tags_reference.Rd |only ijtiff-2.0.0/ijtiff/man/write_tif.Rd | 3 ijtiff-2.0.0/ijtiff/src/RcppExports.cpp | 4 ijtiff-2.0.0/ijtiff/src/common.c | 9 ijtiff-2.0.0/ijtiff/src/read.c | 61 + ijtiff-2.0.0/ijtiff/tests/spelling.R | 6 ijtiff-2.0.0/ijtiff/tests/testthat/test-as_EBImage-examples.R | 2 ijtiff-2.0.0/ijtiff/tests/testthat/test-count_imgs-examples.R | 10 ijtiff-2.0.0/ijtiff/tests/testthat/test-graphics.R |only ijtiff-2.0.0/ijtiff/tests/testthat/test-io.R |only ijtiff-2.0.0/ijtiff/tests/testthat/test-linescan_to_stack-examples.R | 2 ijtiff-2.0.0/ijtiff/tests/testthat/test-read_tags-examples.R | 41 - ijtiff-2.0.0/ijtiff/tests/testthat/test-utils.R |only ijtiff-2.0.0/ijtiff/tests/testthat/test_class_constructors.R | 2 ijtiff-2.0.0/ijtiff/vignettes/reading-and-writing-images.Rmd | 38 - 44 files changed, 684 insertions(+), 421 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.3.4 dated 2019-04-21 and 1.3.5 dated 2019-06-10
DESCRIPTION | 10 MD5 | 128 ++-- NAMESPACE | 2 NEWS.md | 18 R/0nly-internal.R | 8 R/MCMC-support.R | 152 ++++ R/S4-classes.R | 4 R/cld-emm.R | 26 R/contrast.R | 11 R/emm-contr.R | 1 R/emmGrid-methods.R | 47 + R/emmeans-package.R | 3 R/emmeans.R | 1 R/interfacing.R | 10 R/ref-grid.R | 16 R/summary.R | 94 ++- R/zzz.R | 13 build/vignette.rds |binary inst/doc/FAQs.Rmd | 2 inst/doc/FAQs.html | 668 ++++++++++++++++----- inst/doc/basics.html | 1141 +++++++++++++++++++++++++++---------- inst/doc/comparisons.Rmd | 4 inst/doc/comparisons.html | 652 ++++++++++++++++----- inst/doc/confidence-intervals.Rmd | 2 inst/doc/confidence-intervals.html | 691 +++++++++++++++++----- inst/doc/interactions.html | 738 ++++++++++++++++++----- inst/doc/messy-data.html | 680 +++++++++++++++++----- inst/doc/models.Rmd | 14 inst/doc/models.html | 783 +++++++++++++++++++------ inst/doc/predictions.R |only inst/doc/predictions.Rmd |only inst/doc/predictions.html |only inst/doc/sophisticated.R | 90 +- inst/doc/sophisticated.Rmd | 73 +- inst/doc/sophisticated.html | 870 +++++++++++++++++++++------- inst/doc/transformations.R | 23 inst/doc/transformations.Rmd | 88 ++ inst/doc/transformations.html | 820 +++++++++++++++++++++----- inst/doc/utilities.Rmd | 2 inst/doc/utilities.html | 734 +++++++++++++++++------ inst/doc/vignette-topics.Rmd | 32 - inst/doc/vignette-topics.html | 486 +++++++++++---- inst/doc/xtending.R | 5 inst/doc/xtending.Rmd | 19 inst/doc/xtending.html | 729 +++++++++++++++++------ inst/extdata/cbpprglist |only inst/extdata/cbppsigma |only man/CLD.emmGrid.Rd | 5 man/emmGrid-class.Rd | 4 man/emm_options.Rd | 8 man/emmeans-package.Rd | 3 man/extending-emmeans.Rd | 12 man/hpd.summary.Rd | 16 man/mcmc-support.Rd | 38 + man/ref_grid.Rd | 6 man/regrid.Rd | 20 man/summary.emmGrid.Rd | 34 - man/update.emmGrid.Rd | 5 vignettes/FAQs.Rmd | 2 vignettes/comparisons.Rmd | 4 vignettes/confidence-intervals.Rmd | 2 vignettes/models.Rmd | 14 vignettes/predictions.Rmd |only vignettes/sophisticated.Rmd | 73 +- vignettes/transformations.Rmd | 88 ++ vignettes/utilities.Rmd | 2 vignettes/vignette-topics.Rmd | 32 - vignettes/xtending.Rmd | 19 68 files changed, 7941 insertions(+), 2336 deletions(-)
Title: Read, Manipulate and Visualise Magnetic Resonance Images
Description: Functions for working with magnetic resonance images. Reading and
writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH);
interactive and non-interactive visualisation; flexible image manipulation;
metadata and sparse image handling.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between tractor.base versions 3.3.0 dated 2018-12-12 and 3.3.2 dated 2019-06-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/10_mri_image.R | 4 ++++ R/dicom_dir.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is built on
top of the 'tibble'. The 'tsibble' aims at easily manipulating and
analysing temporal data, including counting and filling in time gaps,
aggregate over calendar periods, performing rolling window
calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.8.1 dated 2019-06-03 and 0.8.2 dated 2019-06-10
DESCRIPTION | 6 ++-- MD5 | 32 +++++++++++++----------- NAMESPACE | 1 NEWS.md | 9 +++++++ R/as-tsibble.R | 15 +++++++++-- R/deprecated.R | 3 ++ R/interval.R | 2 - R/tidyr-verbs.R | 50 ++++++++++++++++++++------------------- R/tsibble2ts.R | 38 +++++++++++++++++++++++------ R/update.R | 1 man/as.ts.tbl_ts.Rd | 4 +-- man/build_tsibble_meta.Rd |only man/tsibble-tidyverse.Rd | 21 ---------------- man/unnest_tsibble.Rd |only tests/testthat/test-dplyr.R | 8 ++++++ tests/testthat/test-tidyr.R | 15 ++++++++++- tests/testthat/test-ts2tsibble.R | 5 +++ tests/testthat/test-tsibble2ts.R | 8 ++++++ 18 files changed, 141 insertions(+), 77 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-04 1.0.0
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.3.6 dated 2019-05-29 and 1.3.7 dated 2019-06-10
ChangeLog | 12 +++++++++--- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/KFAS.pdf |binary src/filter1step.f95 | 17 ++++++++++++++--- 5 files changed, 31 insertions(+), 14 deletions(-)
Title: Animal Trajectory Analysis
Description: A toolbox to assist with statistical analysis of 2-dimensional animal trajectories.
It provides simple access to algorithms for calculating and assessing a variety of
characteristics such as speed and acceleration, as well as multiple measures of
straightness or tortuosity. McLean & Skowron Volponi (2018) <doi:10.1111/eth.12739>.
Author: Jim McLean [aut, cre]
Maintainer: Jim McLean <jim_mclean@optusnet.com.au>
Diff between trajr versions 1.1.0 dated 2018-05-10 and 1.3.0 dated 2019-06-10
DESCRIPTION | 12 MD5 | 99 - NAMESPACE | 2 NEWS.md |only R/convenience.R | 132 + R/dirn_autocorr.R | 14 R/generate.R | 20 R/plot.R | 28 R/progressbar.R |only R/query.R | 17 R/rediscretize.R | 2 R/resample.R |only R/smooth |only R/speed.R | 6 R/straightness.R | 66 R/trajectory.R | 58 README.md | 62 build/vignette.rds |binary inst/doc/trajr-vignette.R | 43 inst/doc/trajr-vignette.Rmd | 69 inst/doc/trajr-vignette.html | 946 ++++------- man/ElapsedTimeProgressBarFn.Rd |only man/TrajAngles.Rd | 17 man/TrajConvertTime.Rd |only man/TrajDirectionAutocorrelations.Rd | 4 man/TrajEmax.Rd | 16 man/TrajFromCoords.Rd | 4 man/TrajGenerate.Rd | 23 man/TrajMeanVectorOfTurningAngles.Rd | 11 man/TrajRediscretize.Rd | 2 man/TrajResampleTime.Rd |only man/TrajRotate.Rd | 14 man/TrajSinuosity.Rd | 20 man/TrajSinuosity2.Rd | 15 man/TrajSmoothSG.Rd | 9 man/TrajTranslate.Rd | 10 man/TrajsBuild.Rd | 31 man/TrajsMergeStats.Rd | 17 man/TrajsStatsReplaceNAs.Rd | 4 man/lines.Trajectory.Rd | 10 man/plot.Trajectory.Rd | 8 man/points.Trajectory.Rd | 4 tests/testdata/3527.csv | 232 +- tests/testdata/3530.csv | 2640 +++++++++++++++---------------- tests/testdata/3534.csv | 1470 ++++++++--------- tests/testdata/3537.csv | 2940 +++++++++++++++++------------------ tests/testdata/3542.csv | 2690 ++++++++++++++++---------------- tests/testdata/3543.csv | 1448 ++++++++--------- tests/testdata/3548.csv | 1656 +++++++++---------- tests/testdata/short.csv |only tests/testthat/Rplots.pdf |binary tests/testthat/test_basic.R | 183 +- vignettes/trajr-dragon.png |only vignettes/trajr-vignette.Rmd | 69 54 files changed, 7764 insertions(+), 7359 deletions(-)
Title: Quantile Treatment Effects
Description: Provides several methods for computing the Quantile Treatment Effect (QTE) and Quantile Treatment Effect on the Treated (QTT). The main cases covered are (i) Treatment is randomly assigned, (ii) Treatment is as good as randomly assigned after conditioning on some covariates (also called conditional independence or selection on observables) using the methods developed in Firpo (2007) <doi:10.1111/j.1468-0262.2007.00738.x>, (iii) Identification is based on a Difference in Differences assumption (several varieties are available in the package e.g. Athey and Imbens (2006) <doi:10.1111/j.1468-0262.2006.00668.x> Callaway and Li (2019) <https://ssrn.com/abstract=3013341>, Callaway, Li, and Oka (2018) <doi:10.1016/j.jeconom.2018.06.008>).
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@temple.edu>
Diff between qte versions 1.2.2 dated 2018-04-30 and 1.3.0 dated 2019-06-10
qte-1.2.2/qte/inst/doc/R-QTEs.R |only qte-1.2.2/qte/inst/doc/R-QTEs.Rmd |only qte-1.2.2/qte/inst/doc/R-QTEs.pdf |only qte-1.3.0/qte/DESCRIPTION | 17 qte-1.3.0/qte/MD5 | 93 - qte-1.3.0/qte/NAMESPACE | 6 qte-1.3.0/qte/NEWS.md | 11 qte-1.3.0/qte/R/CiC.R |only qte-1.3.0/qte/R/MDiD.R |only qte-1.3.0/qte/R/QDiD.R | 248 ++-- qte-1.3.0/qte/R/QTEparams.R | 1 qte-1.3.0/qte/R/bootstrap.R | 9 qte-1.3.0/qte/R/bounds.R | 26 qte-1.3.0/qte/R/ciqte.R | 45 qte-1.3.0/qte/R/ciqtet.R | 23 qte-1.3.0/qte/R/ddid2.R | 253 +--- qte-1.3.0/qte/R/helper-functions.R | 45 qte-1.3.0/qte/R/panel-checks.R |only qte-1.3.0/qte/R/qte.R | 1751 +++--------------------------- qte-1.3.0/qte/R/setupData.R | 27 qte-1.3.0/qte/R/zzz.R |only qte-1.3.0/qte/build/vignette.rds |binary qte-1.3.0/qte/inst/doc/R-QTEsWrapper.Rnw |only qte-1.3.0/qte/inst/doc/R-QTEsWrapper.pdf |only qte-1.3.0/qte/inst/doc/ddid2.R | 4 qte-1.3.0/qte/inst/doc/ddid2.Rmd | 4 qte-1.3.0/qte/inst/doc/ddid2.html | 382 ++---- qte-1.3.0/qte/inst/doc/panel-qtet.R | 2 qte-1.3.0/qte/inst/doc/panel-qtet.Rmd | 2 qte-1.3.0/qte/inst/doc/panel-qtet.html | 372 ++---- qte-1.3.0/qte/man/BoundsObj.Rd | 4 qte-1.3.0/qte/man/CiC.Rd | 46 qte-1.3.0/qte/man/MDiD.Rd | 44 qte-1.3.0/qte/man/QDiD.Rd | 51 qte-1.3.0/qte/man/QTE.Rd | 19 qte-1.3.0/qte/man/QTEparams.Rd | 10 qte-1.3.0/qte/man/SE.Rd | 8 qte-1.3.0/qte/man/bounds.Rd | 28 qte-1.3.0/qte/man/ci.qte.Rd | 18 qte-1.3.0/qte/man/ci.qtet.Rd | 29 qte-1.3.0/qte/man/compute.CiC.Rd | 38 qte-1.3.0/qte/man/compute.MDiD.Rd | 31 qte-1.3.0/qte/man/compute.panel.qtet.Rd | 41 qte-1.3.0/qte/man/ddid2.Rd | 21 qte-1.3.0/qte/man/ggqte.Rd | 10 qte-1.3.0/qte/man/panel.checks.Rd |only qte-1.3.0/qte/man/panel.qtet.Rd | 61 - qte-1.3.0/qte/man/panelize.data.Rd |only qte-1.3.0/qte/man/plot.QTE.Rd | 8 qte-1.3.0/qte/vignettes/R-QTEs.pdf |only qte-1.3.0/qte/vignettes/R-QTEsWrapper.Rnw |only qte-1.3.0/qte/vignettes/auto |only qte-1.3.0/qte/vignettes/ddid2.Rmd | 4 qte-1.3.0/qte/vignettes/panel-qtet.Rmd | 2 54 files changed, 1050 insertions(+), 2744 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm versions 3.10.1 dated 2019-05-14 and 3.10.4 dated 2019-06-10
DESCRIPTION | 19 ++++--- MD5 | 52 ++++++++++---------- R/check.ErgmTerm.R | 97 +++++++++++---------------------------- R/data.R | 8 +-- R/ergm.R | 10 ++-- R/ergm.getCDsample.R | 4 - R/ergm.getMCMCsample.R | 4 - R/ergm.san.R | 38 ++++++++------- R/ergm.stepping.R | 2 R/ergm.utility.R | 64 ------------------------- R/is.inCH.R | 4 - build/partial.rdb |binary inst/CITATION | 4 - inst/NEWS.Rd | 23 +++++++++ inst/doc/ergm-term-crossRef.html | 41 +++++++--------- inst/doc/ergm.pdf |binary man/Getting.Started.Rd | 16 +++--- man/check.ErgmTerm.Rd | 4 - man/ergm-package.Rd | 12 ++-- man/ergm.Rd | 10 ++-- man/faux.desert.high.Rd | 2 man/faux.dixon.high.Rd | 2 man/faux.magnolia.high.Rd | 2 man/faux.mesa.high.Rd | 2 man/san.Rd | 38 ++++++++------- src/changestats.c | 18 +++---- tests/testthat/test-ergm-san.R | 48 ++++++++++--------- 27 files changed, 221 insertions(+), 303 deletions(-)