Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between castor versions 1.4.0 dated 2019-06-14 and 1.4.1 dated 2019-06-15
DESCRIPTION | 9 MD5 | 24 +- R/RcppExports.R | 4 R/fit_hbd_class_parametric.R |only R/fit_hbd_model_parametric.R | 12 - R/simulate_deterministic_hbd.R | 17 + man/fit_bm_model.Rd | 2 man/fit_hbd_class_on_grid.Rd | 2 man/fit_hbd_class_parametric.Rd |only man/fit_hbd_model_on_grid.Rd | 2 man/fit_hbd_model_parametric.Rd | 14 - man/simulate_deterministic_hbd.Rd | 18 + src/RcppExports.cpp | 9 src/phylogenetics_cpp_routines.cpp | 402 ++++++++++++++++++++----------------- 14 files changed, 298 insertions(+), 217 deletions(-)
Title: A Graphical User Interface for Network Modeling with 'Statnet'
Description: A graphical user interface for network modeling with the 'statnet'
software <https://github.com/statnet>.
Author: Martina Morris [cre, aut],
Emily Beylerian [aut],
Kirk Li [ctb],
Samuel Jenness [ctb]
Maintainer: Martina Morris <morrism@uw.edu>
Diff between statnetWeb versions 0.5.0 dated 2018-07-21 and 0.5.4 dated 2019-06-15
statnetWeb-0.5.0/statnetWeb/inst/shiny/global.R |only statnetWeb-0.5.0/statnetWeb/inst/shiny/server.R |only statnetWeb-0.5.0/statnetWeb/inst/shiny/ui.R |only statnetWeb-0.5.0/statnetWeb/inst/shiny/www |only statnetWeb-0.5.0/statnetWeb/man/run_sW.Rd |only statnetWeb-0.5.4/statnetWeb/DESCRIPTION | 15 ++++---- statnetWeb-0.5.4/statnetWeb/MD5 | 37 +++++++++++----------- statnetWeb-0.5.4/statnetWeb/R/run_sw.R | 8 ++-- statnetWeb-0.5.4/statnetWeb/README.md | 7 ---- statnetWeb-0.5.4/statnetWeb/inst/shiny/statnetWeb |only statnetWeb-0.5.4/statnetWeb/man/run_sw.Rd |only statnetWeb-0.5.4/statnetWeb/man/statnetWeb.Rd | 1 12 files changed, 31 insertions(+), 37 deletions(-)
Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 1.3.5 dated 2019-03-10 and 1.4.0 dated 2019-06-15
openCR-1.3.5/openCR/R/posterior.R |only openCR-1.3.5/openCR/R/summary.R |only openCR-1.3.5/openCR/src/prwi.cpp |only openCR-1.3.5/openCR/src/prwisecr.cpp |only openCR-1.4.0/openCR/DESCRIPTION | 8 openCR-1.4.0/openCR/MD5 | 78 +-- openCR-1.4.0/openCR/NAMESPACE | 9 openCR-1.4.0/openCR/NEWS | 38 + openCR-1.4.0/openCR/R/PCH1.R | 47 - openCR-1.4.0/openCR/R/RcppExports.R | 40 - openCR-1.4.0/openCR/R/derived.r | 4 openCR-1.4.0/openCR/R/getfn.R | 8 openCR-1.4.0/openCR/R/kernel.R |only openCR-1.4.0/openCR/R/loglik.R | 544 +--------------------- openCR-1.4.0/openCR/R/logliksecr.R |only openCR-1.4.0/openCR/R/openCR.esa.r | 106 +--- openCR-1.4.0/openCR/R/openCR.fit.R | 114 ++-- openCR-1.4.0/openCR/R/plot.derivedopenCR.R |only openCR-1.4.0/openCR/R/plot.openCR.R | 37 + openCR-1.4.0/openCR/R/plotKernel.R | 53 +- openCR-1.4.0/openCR/R/posterior2.R | 231 +++------ openCR-1.4.0/openCR/R/predict.openCR.R | 8 openCR-1.4.0/openCR/R/prwisecr.R | 219 ++++---- openCR-1.4.0/openCR/R/simulate.R | 37 + openCR-1.4.0/openCR/R/summary.openCR.R |only openCR-1.4.0/openCR/R/utility.R | 41 + openCR-1.4.0/openCR/inst/doc/openCR-vignette.R | 4 openCR-1.4.0/openCR/inst/doc/openCR-vignette.Rmd | 233 ++------- openCR-1.4.0/openCR/inst/doc/openCR-vignette.pdf |binary openCR-1.4.0/openCR/man/kernel.Rd |only openCR-1.4.0/openCR/man/openCR-internal.Rd | 5 openCR-1.4.0/openCR/man/openCR-package.Rd | 8 openCR-1.4.0/openCR/man/openCR.fit.Rd | 11 openCR-1.4.0/openCR/man/plot.derivedopenCR.Rd |only openCR-1.4.0/openCR/man/plot.openCR.Rd | 8 openCR-1.4.0/openCR/man/plotKernel.Rd | 16 openCR-1.4.0/openCR/man/ucare.Rd | 3 openCR-1.4.0/openCR/src/PCH1.cpp | 195 ++----- openCR-1.4.0/openCR/src/RcppExports.cpp | 242 ++------- openCR-1.4.0/openCR/src/makegk.cpp | 10 openCR-1.4.0/openCR/src/prwiparallel.cpp | 11 openCR-1.4.0/openCR/src/prwisecrparallel.cpp | 443 +++++++++++------ openCR-1.4.0/openCR/src/utils.cpp | 68 +- openCR-1.4.0/openCR/src/utils.h | 12 openCR-1.4.0/openCR/vignettes/openCR-vignette.Rmd | 233 ++------- 45 files changed, 1271 insertions(+), 1853 deletions(-)
Title: R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd' URL Shortening
Services
Description: Allows using two URL shortening services, which also provide
expanding and analytic functions. Specifically developed for 'Bit.ly' (which requires OAuth2) and 'is.gd' (no API key).
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Diff between urlshorteneR versions 0.9.2 dated 2016-02-14 and 1.1.1 dated 2019-06-15
urlshorteneR-0.9.2/urlshorteneR/R/bitly_information.R |only urlshorteneR-0.9.2/urlshorteneR/R/bitly_linksMetrics.R |only urlshorteneR-0.9.2/urlshorteneR/R/bitly_userMetrics.R |only urlshorteneR-0.9.2/urlshorteneR/R/googl_links.R |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_IsProDomain.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksExpand.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksInfo.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksLookup.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsClicks.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsCountries.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsEncoders.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsEncodersByCount.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsEncodersCount.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsReferrers.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsReferrersByDomain.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksMetricsReferringDomains.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksShorten.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserInfo.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserLinkHistory.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsClicks.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsCountries.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsPopularLinks.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsReferrers.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsReferringDomains.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserMetricsShortenCounts.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/bitly_UserTrackingDomains.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/googl_LinksExpand.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/googl_LinksShorten.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/googl_UserLinkHistory.Rd |only urlshorteneR-0.9.2/urlshorteneR/man/googl_auth.Rd |only urlshorteneR-0.9.2/urlshorteneR/tests/testthat/test-Information_LinkMetrics.R |only urlshorteneR-1.1.1/urlshorteneR/DESCRIPTION | 33 urlshorteneR-1.1.1/urlshorteneR/MD5 | 125 - urlshorteneR-1.1.1/urlshorteneR/NAMESPACE | 74 urlshorteneR-1.1.1/urlshorteneR/NEWS | 13 urlshorteneR-1.1.1/urlshorteneR/R/ApiKey.R | 202 +- urlshorteneR-1.1.1/urlshorteneR/R/bitly_bsd.R |only urlshorteneR-1.1.1/urlshorteneR/R/bitly_camp.R |only urlshorteneR-1.1.1/urlshorteneR/R/bitly_custom_links.R |only urlshorteneR-1.1.1/urlshorteneR/R/bitly_groups.R |only urlshorteneR-1.1.1/urlshorteneR/R/bitly_links.R | 746 +++++++-- urlshorteneR-1.1.1/urlshorteneR/R/bitly_orgs.R |only urlshorteneR-1.1.1/urlshorteneR/R/bitly_user_app_info.R |only urlshorteneR-1.1.1/urlshorteneR/R/isgd_links.R | 66 urlshorteneR-1.1.1/urlshorteneR/R/vgd_links.R |only urlshorteneR-1.1.1/urlshorteneR/R/zzz.R | 6 urlshorteneR-1.1.1/urlshorteneR/README.md | 108 + urlshorteneR-1.1.1/urlshorteneR/build/vignette.rds |binary urlshorteneR-1.1.1/urlshorteneR/inst/doc/Tutorial.R | 58 urlshorteneR-1.1.1/urlshorteneR/inst/doc/Tutorial.Rmd | 186 -- urlshorteneR-1.1.1/urlshorteneR/inst/doc/Tutorial.html | 781 ++++------ urlshorteneR-1.1.1/urlshorteneR/man/bitly_add_cust_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_app_details.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_auth.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_bsds.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_create_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_create_campaigns.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_create_channel.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_expand_link.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_bitlinks_by_groups.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_campaign.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_campaigns.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_channel.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_channels.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_clicks.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_clicks_summary.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_cust_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_destination_metrics.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_group.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_group_click_metrics_by_countries.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_group_click_metrics_by_ref_networks.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_group_pref.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_group_shorten_counts.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_groups.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_links_grouped.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_metrics_by_countries.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_metrics_by_referrers.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_metrics_by_referrers_by_domain.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_org.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_org_shorten_counts.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_orgs.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_sorted_bitlinks_by_groups.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_sorted_links.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_retrieve_tags.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_shorten_link.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_campaign.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_channel.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_cust_bitlink.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_group.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_group_pref.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_update_user.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_user_info.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/bitly_user_metrics_referring_domains.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/is_bitly_user_premium_holder.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/isgd_LinksExpand.Rd | 16 urlshorteneR-1.1.1/urlshorteneR/man/isgd_LinksShorten.Rd | 30 urlshorteneR-1.1.1/urlshorteneR/man/vgd_LinksExpand.Rd |only urlshorteneR-1.1.1/urlshorteneR/man/vgd_LinksShorten.Rd |only urlshorteneR-1.1.1/urlshorteneR/tests/testthat.R | 30 urlshorteneR-1.1.1/urlshorteneR/tests/testthat/test-GitHubIssue9.R | 7 urlshorteneR-1.1.1/urlshorteneR/tests/testthat/test-Information.R |only urlshorteneR-1.1.1/urlshorteneR/tests/testthat/test-Links.R | 52 urlshorteneR-1.1.1/urlshorteneR/tests/testthat/test-UserMetrics.R | 65 urlshorteneR-1.1.1/urlshorteneR/tests/testthat/test-grOrgBDS.R |only urlshorteneR-1.1.1/urlshorteneR/vignettes/Tutorial.Rmd | 188 -- 107 files changed, 1567 insertions(+), 1219 deletions(-)
Title: A Suite of R Functions Implementing Spline Smoothing Techniques
Description: A comprehensive package for fitting various non-parametric/semi-parametric linear/nonlinear fixed/mixed smoothing spline models.
Author: Yuedong Wang <yuedong@pstat.ucsb.edu>, and
Chunlei Ke <chunlei_ke@yahoo.com>.
Maintainer: Yuedong Wang <yuedong@pstat.ucsb.edu>
Diff between assist versions 3.1.4 dated 2019-06-02 and 3.1.5 dated 2019-06-15
DESCRIPTION | 6 ++--- MD5 | 6 ++--- src/rkpk1.f | 63 +++++++++++++++++++++++++++++++++++++----------------------- src/rkpk2.f | 18 ++++++++++------- 4 files changed, 56 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-24 0.5.1
2018-03-05 0.3.1
2017-08-24 0.2.0
2017-05-30 0.1.0
2017-05-28 0.0.1
Title: Outlier Detection
Description: To detect outliers using different methods namely model based outlier detection (Barnett, V. 1978 <https://www.jstor.org/stable/2347159>), distance based outlier detection (Hautamaki, V., Karkkainen, I., and Franti, P. 2004 <http://cs.uef.fi/~franti/papers.html>), dispersion based outlier detection (Jin, W., Tung, A., and Han, J. 2001 <https://link.springer.com/chapter/10.1007/0-387-25465-X_7>), depth based outlier detection (Johnson, T., Kwok, I., and Ng, R.T. 1998 <http://www.aaai.org/Library/KDD/1998/kdd98-038.php>) and density based outlier detection (Ester, M., Kriegel, H.-P., Sander, J., and Xu, X. 1996 <https://dl.acm.org/citation.cfm?id=3001507>). This package provides labelling of observations as outliers and outlierliness of each outlier. For univariate, bivariate and trivariate data, visualization is also provided.
Author: Vinay Tiwari, Akanksha Kashikar
Maintainer: Vinay Tiwari <vinaystiwari786@gmail.com>
Diff between OutlierDetection versions 0.1.0 dated 2019-02-07 and 0.1.1 dated 2019-06-15
DESCRIPTION | 10 +++--- MD5 | 38 ++++++++++++----------- NAMESPACE | 5 +++ R/Maha.R | 23 +++++++++++--- R/OutlierDetection.R | 36 ++++++++++++++++------ R/dens.R | 49 ++++++++++++++++++++++++++---- R/depth.R | 49 ++++++++++++++++++++++++++---- R/dispersion.R | 53 +++++++++++++++++++++++++++------ R/distance(KthNearestNeighbour).R | 61 +++++++++++++++++++++++++++++--------- R/distance.R | 53 +++++++++++++++++++++++++++++---- R/pcoutlierdetection.R |only R/univariateoutlierdetection.R | 3 + man/OutlierDetection.Rd | 5 ++- man/PCOutlierDetection.Rd |only man/UnivariateOutlierDetection.Rd | 5 ++- man/dens.Rd | 5 ++- man/depthout.Rd | 5 ++- man/disp.Rd | 5 ++- man/maha.Rd | 7 +++- man/nn.Rd | 5 ++- man/nnk.Rd | 5 ++- 21 files changed, 334 insertions(+), 88 deletions(-)
More information about OutlierDetection at CRAN
Permanent link
Title: Detrend Images
Description: Detrend fluorescence microscopy image series for fluorescence
fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This
package contains functionality published in a 2016 paper
<doi:10.1093/bioinformatics/btx434> but it has been extended since then with
the Robin Hood algorithm and thus contains unpublished work.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between detrendr versions 0.6.1 dated 2019-04-13 and 0.6.2 dated 2019-06-15
detrendr-0.6.1/detrendr/tests/testthat/test-class_constructors.R |only detrendr-0.6.1/detrendr/tests/testthat/test-col_stats.R |only detrendr-0.6.1/detrendr/tests/testthat/test-dir_detrend.R |only detrendr-0.6.1/detrendr/tests/testthat/test-frame_stats.R |only detrendr-0.6.1/detrendr/tests/testthat/test-pillar_stats.R |only detrendr-0.6.1/detrendr/tests/testthat/test-pillar_utils.R |only detrendr-0.6.2/detrendr/DESCRIPTION | 23 +- detrendr-0.6.2/detrendr/MD5 | 91 +++++----- detrendr-0.6.2/detrendr/NEWS.md | 48 +++-- detrendr-0.6.2/detrendr/R/best_degree.R | 11 - detrendr-0.6.2/detrendr/R/best_l.R | 15 + detrendr-0.6.2/detrendr/R/best_swaps.R | 28 ++- detrendr-0.6.2/detrendr/R/best_tau.R | 11 - detrendr-0.6.2/detrendr/R/detrend.R | 22 +- detrendr-0.6.2/detrendr/R/dir_detrend.R | 40 ++-- detrendr-0.6.2/detrendr/R/frame_stats.R | 3 detrendr-0.6.2/detrendr/R/iterators.R | 4 detrendr-0.6.2/detrendr/R/myrs.R | 16 + detrendr-0.6.2/detrendr/R/pillar_stats.R | 14 - detrendr-0.6.2/detrendr/R/utils.R | 9 detrendr-0.6.2/detrendr/build/vignette.rds |binary detrendr-0.6.2/detrendr/inst/doc/batch-mode.html | 4 detrendr-0.6.2/detrendr/inst/doc/single-images.R | 3 detrendr-0.6.2/detrendr/inst/doc/single-images.Rmd | 3 detrendr-0.6.2/detrendr/inst/doc/single-images.html | 13 - detrendr-0.6.2/detrendr/man/best_degree.Rd | 5 detrendr-0.6.2/detrendr/man/best_l.Rd | 5 detrendr-0.6.2/detrendr/man/best_swaps.Rd | 8 detrendr-0.6.2/detrendr/man/best_tau.Rd | 5 detrendr-0.6.2/detrendr/man/brightness_pillars.Rd | 1 detrendr-0.6.2/detrendr/man/detrend-directory.Rd | 13 - detrendr-0.6.2/detrendr/man/detrending.Rd | 5 detrendr-0.6.2/detrendr/man/mean_frames.Rd | 3 detrendr-0.6.2/detrendr/man/pillar-stats.Rd | 3 detrendr-0.6.2/detrendr/man/rfromboxes.Rd | 1 detrendr-0.6.2/detrendr/man/rtoboxes.Rd | 7 detrendr-0.6.2/detrendr/tests/spelling.R | 9 detrendr-0.6.2/detrendr/tests/testthat/test-anyNA.R | 2 detrendr-0.6.2/detrendr/tests/testthat/test-best_params.R | 3 detrendr-0.6.2/detrendr/tests/testthat/test-brightness.R | 2 detrendr-0.6.2/detrendr/tests/testthat/test-class-constructors.R |only detrendr-0.6.2/detrendr/tests/testthat/test-col-stats.R |only detrendr-0.6.2/detrendr/tests/testthat/test-detrend.R | 1 detrendr-0.6.2/detrendr/tests/testthat/test-dir-detrend.R |only detrendr-0.6.2/detrendr/tests/testthat/test-frame-stats.R |only detrendr-0.6.2/detrendr/tests/testthat/test-iterators.R | 2 detrendr-0.6.2/detrendr/tests/testthat/test-myrs.R |only detrendr-0.6.2/detrendr/tests/testthat/test-pillar-stats.R |only detrendr-0.6.2/detrendr/tests/testthat/test-pillar-utils.R |only detrendr-0.6.2/detrendr/tests/testthat/test-polynom.R | 4 detrendr-0.6.2/detrendr/tests/testthat/test-smooth.R | 6 detrendr-0.6.2/detrendr/tests/testthat/test-utils.R | 28 +-- detrendr-0.6.2/detrendr/vignettes/single-images.Rmd | 3 53 files changed, 262 insertions(+), 212 deletions(-)
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the 'stringr'
or 'stringi' packages. The foremost of these is the extraction of numbers
from strings. 'stringr' and 'stringi' make you figure out the regular
expression for yourself; 'strex' takes care of this for you. There are many
other handy functionalities in 'strex'. Contributions to this package are
encouraged: it is intended as a miscellany of string manipulation functions
that cannot be found in 'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 1.0.3 dated 2019-06-04 and 1.1.0 dated 2019-06-15
DESCRIPTION | 15 +++++--- MD5 | 63 +++++++++++++++++++++---------------- NAMESPACE | 2 + NEWS.md | 9 +++++ R/RcppExports.R | 8 ++-- R/strex-package.R | 2 + R/trim.R | 17 +++++++-- R/utils.R | 23 ++++++------- build/partial.rdb |binary cleanup |only cleanup.win |only configure |only configure.win |only inst/doc/alphordering-numbers.html | 4 +- inst/doc/argument-matching.html | 57 +++++++++++---------------------- inst/doc/before-and-after.html | 4 +- inst/doc/important-miscellany.R | 4 +- inst/doc/important-miscellany.Rmd | 7 +--- inst/doc/important-miscellany.html | 9 ++--- inst/doc/numbers-in-strings.html | 4 +- man/str_trim_anything.Rd | 12 +++++-- src/RcppExports.cpp | 26 +++++++-------- src/list-utils.cpp | 20 +++++------ tests/testthat/test-after.R | 2 - tests/testthat/test-alphord.R | 2 - tests/testthat/test-arg-match.R | 16 ++++----- tests/testthat/test-currency.R | 2 - tests/testthat/test-elem.R | 2 - tests/testthat/test-locate.R | 4 +- tests/testthat/test-num-after.R | 2 - tests/testthat/test-trim.R | 11 +++++- tools |only vignettes/important-miscellany.Rmd | 7 +--- 33 files changed, 178 insertions(+), 156 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.19 dated 2018-12-13 and 0.4.20 dated 2019-06-15
photobiologyInOut-0.4.19/photobiologyInOut/R/on-load.R |only photobiologyInOut-0.4.20/photobiologyInOut/DESCRIPTION | 24 photobiologyInOut-0.4.20/photobiologyInOut/MD5 | 41 photobiologyInOut-0.4.20/photobiologyInOut/NEWS | 7 photobiologyInOut-0.4.20/photobiologyInOut/R/read-avaspec-csv.r | 9 photobiologyInOut-0.4.20/photobiologyInOut/R/read-fmi-cum.R | 16 photobiologyInOut-0.4.20/photobiologyInOut/R/read-fred-csv.r | 2 photobiologyInOut-0.4.20/photobiologyInOut/R/read-libradtran.r | 2 photobiologyInOut-0.4.20/photobiologyInOut/R/read-licor-prn.r | 16 photobiologyInOut-0.4.20/photobiologyInOut/R/read-macam-dta.r | 2 photobiologyInOut-0.4.20/photobiologyInOut/R/read-oojaz-file.r | 9 photobiologyInOut-0.4.20/photobiologyInOut/R/read-oopi-file.r | 9 photobiologyInOut-0.4.20/photobiologyInOut/R/read-ooss-file.r | 9 photobiologyInOut-0.4.20/photobiologyInOut/R/read-tuv-file.r | 10 photobiologyInOut-0.4.20/photobiologyInOut/README.md | 45 photobiologyInOut-0.4.20/photobiologyInOut/build/vignette.rds |binary photobiologyInOut-0.4.20/photobiologyInOut/inst/doc/user-guide.R | 2 photobiologyInOut-0.4.20/photobiologyInOut/inst/doc/user-guide.Rmd | 2 photobiologyInOut-0.4.20/photobiologyInOut/inst/doc/user-guide.html | 679 +++++----- photobiologyInOut-0.4.20/photobiologyInOut/man/read_FReD_csv.Rd | 2 photobiologyInOut-0.4.20/photobiologyInOut/man/read_licor_prn.Rd | 4 photobiologyInOut-0.4.20/photobiologyInOut/vignettes/user-guide.Rmd | 2 22 files changed, 493 insertions(+), 399 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Climate Window Analysis
Description: Contains functions to detect and visualise periods of climate
sensitivity (climate windows) for a given biological response.
Please see van de Pol et al. (2016) <doi:10.1111/2041-210X.12590>
and Bailey and van de Pol (2016) <doi:10.1371/journal.pone.0167980> for details.
Author: Liam D. Bailey and Martijn van de Pol
Maintainer: Liam D. Bailey <liam.bailey@liamdbailey.com>
Diff between climwin versions 1.2.1 dated 2019-06-02 and 1.2.2 dated 2019-06-15
DESCRIPTION | 6 MD5 | 26 +-- NEWS.md | 22 ++ R/otherfunctions.R | 100 ++++++++---- R/plotwin.R | 16 +- R/randwin.R | 19 ++ R/singlewin.R | 60 +++++-- R/slidingwin.R | 18 ++ inst/doc/advanced_climwin.html | 4 inst/doc/climwin.html | 4 tests/testthat/testdateconverter.R | 294 +++++++++++++++++++++++++++++++++++-- tests/testthat/testsinglewin.R | 68 ++++++++ tests/testthat/testslidingwin.R | 65 +++++++- tests/testthat/testweightwin.R | 19 +- 14 files changed, 621 insertions(+), 100 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations. Summarises information about the
tiles of the tessellation.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between deldir versions 0.1-16 dated 2019-01-04 and 0.1-21 dated 2019-06-15
deldir-0.1-16/deldir/inst/ratfor/fexitf.r |only deldir-0.1-16/deldir/src/fexitc.c |only deldir-0.1-16/deldir/src/fexitf.f |only deldir-0.1-21/deldir/ChangeLog | 54 ++++++++++++++++++++++ deldir-0.1-21/deldir/DESCRIPTION | 8 +-- deldir-0.1-21/deldir/MD5 | 38 ++++++++------- deldir-0.1-21/deldir/R/deldir.R | 2 deldir-0.1-21/deldir/R/lawSummary.R |only deldir-0.1-21/deldir/data/niProperties.rda |binary deldir-0.1-21/deldir/data/seaweed.rda |binary deldir-0.1-21/deldir/inst/code.discarded/fexitc.c |only deldir-0.1-21/deldir/inst/code.discarded/fexitf.f |only deldir-0.1-21/deldir/inst/code.discarded/fexitf.r |only deldir-0.1-21/deldir/inst/ratfor/binsrt.r | 6 +- deldir-0.1-21/deldir/inst/ratfor/delseg.r | 1 deldir-0.1-21/deldir/inst/ratfor/master.r | 5 -- deldir-0.1-21/deldir/inst/ratfor/trifnd.r | 4 - deldir-0.1-21/deldir/man/deldir.Rd | 30 ++++++------ deldir-0.1-21/deldir/man/lawSummary.Rd |only deldir-0.1-21/deldir/src/binsrt.f | 6 +- deldir-0.1-21/deldir/src/delseg.f | 1 deldir-0.1-21/deldir/src/init.c | 7 +- deldir-0.1-21/deldir/src/master.f | 7 +- deldir-0.1-21/deldir/src/trifnd.f | 4 - 24 files changed, 112 insertions(+), 61 deletions(-)