Mon, 17 Jun 2019

Package ADAPTS updated to version 0.9.20 with previous version 0.9.14 dated 2019-05-17

Title: Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells
Description: Augments existing or de-novo cell-type signature matrices to deconvolve bulk gene expression data. Useful for building signature matrices from single cell RNAseq data, determine cell type deconvolution spillover, and hierarchical deconvolution to use spillover to increase deconvolution accuracy. Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1101/633958>. This package expands on the techniques outlined in Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh, AA (2015) <doi:10.1038/nmeth.3337>'s Nature Methods paper: 'Robust enumeration of cell subsets from tissue expression profiles' to allow a user to easily add their own cell types (e.g. a tumor specific cell type) to Newman's LM22 or other signature matrix.
Author: Samuel A Danziger
Maintainer: Samuel A Danziger <sam.danziger@gmail.com>

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Package SSDforR updated to version 1.5.5 with previous version 1.5.4 dated 2019-04-05

Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre], Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>

Diff between SSDforR versions 1.5.4 dated 2019-04-05 and 1.5.5 dated 2019-06-17

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Package earthtide updated to version 0.0.9 with previous version 0.0.8 dated 2019-06-13

Title: Parallel Implementation of 'ETERNA 3.40' for Prediction and Analysis of Earth Tides
Description: This is a port of 'Fortran ETERNA 3.4' <http://igets.u-strasbg.fr/soft_and_tool.php> by H.G. Wenzel for calculating synthetic Earth tides using the Hartmann and Wenzel (1994) <doi:10.1029/95GL03324> or Kudryavtsev (2004) <doi:10.1007/s00190-003-0361-2> tidal catalogs.
Author: Jonathan Kennel [aut, cre, trl], Beth Parker [ths], Wenzel Hans-Georg [ctb]
Maintainer: Jonathan Kennel <jkennel@uoguelph.ca>

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Package dbplyr updated to version 1.4.2 with previous version 1.4.1 dated 2019-06-05

Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.
Author: Hadley Wickham [aut, cre], Edgar Ruiz [aut], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package prediction updated to version 0.3.14 with previous version 0.3.6.2 dated 2019-01-31

Title: Tidy, Type-Safe 'prediction()' Methods
Description: A one-function package containing 'prediction()', a type-safe alternative to 'predict()' that always returns a data frame. The 'summary()' method provides a data frame with average predictions, possibly over counterfactual versions of the data (a la the 'margins' command in 'Stata'). Marginal effect estimation is provided by the related package, 'margins' <https://cran.r-project.org/package=margins>. The package currently supports common model types (e.g., "lm", "glm") from the 'stats' package, as well as numerous other model classes from other add-on packages. See the README or main package documentation page for a complete listing.
Author: Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>), Carl Ganz [ctb], Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

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Package MSEtool updated to version 1.2.0 with previous version 1.1.0 dated 2018-10-17

Title: Management Strategy Evaluation Toolkit
Description: Simulation tools for management strategy evaluation are provided for the 'DLMtool' operating model to inform data-rich fisheries. 'MSEtool' provides complementary assessment models of varying complexity with standardized reporting, diagnostic tools for evaluating assessment models within closed-loop simulation, and helper functions for building more complex operating models and management procedures.
Author: Quang Huynh [aut], Tom Carruthers [aut, cre], Adrian Hordyk [aut], Chris Grandin [ctb] (iSCAM functions)
Maintainer: Tom Carruthers <t.carruthers@oceans.ubc.ca>

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Package fgeo.tool updated to version 1.2.5 with previous version 1.2.4 dated 2019-05-13

Title: Import and Manipulate ForestGEO Data
Description: To help you access, transform, analyze, and visualize ForestGEO data, we developed a collection of R packages (<https://forestgeo.github.io/fgeo/>). This package, in particular, helps you to easily import, filter, and modify ForestGEO data. To learn more about ForestGEO visit <http://www.forestgeo.si.edu/>.
Author: Mauro Lepore [aut, ctr, cre] (<https://orcid.org/0000-0002-1986-7988>), Richard Condit [aut], Suzanne Lao [aut], Anudeep Singh [aut], CTFS-ForestGEO [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>

Diff between fgeo.tool versions 1.2.4 dated 2019-05-13 and 1.2.5 dated 2019-06-17

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Package bigreadr updated to version 0.1.5 with previous version 0.1.3 dated 2018-08-13

Title: Read Large Text Files
Description: Read large text files by splitting them in smaller files.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>

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Package segmented updated to version 1.0-0 with previous version 0.5-4.0 dated 2019-05-13

Title: Regression Models with Break-Points / Change-Points Estimation
Description: Given a regression model, segmented `updates' it by adding one or more segmented (i.e., piece-wise linear) relationships. Several variables with multiple breakpoints are allowed. The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>

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Package DesignLibrary updated to version 0.1.4 with previous version 0.1.3 dated 2019-05-02

Title: Library of Research Designs
Description: A simple interface to build designs using the package 'DeclareDesign'. In one line of code, users can specify the parameters of individual designs and diagnose their properties. The designers can also be used to compare performance of a given design across a range of combinations of parameters, such as effect size, sample size, and assignment probabilities.
Author: Graeme Blair [aut], Jasper Cooper [aut, cre], Alexander Coppock [aut], Macartan Humphreys [aut], Clara Bicalho [aut], Neal Fultz [aut], Lily Medina [aut]
Maintainer: Jasper Cooper <jjc2247@columbia.edu>

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Package aroma.core updated to version 3.2.0 with previous version 3.1.3 dated 2018-05-06

Title: Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Description: Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
Author: Henrik Bengtsson [aut, cre, cph], Mark Robinson [ctb], Ken Simpson [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between aroma.core versions 3.1.3 dated 2018-05-06 and 3.2.0 dated 2019-06-17

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Package tab updated to version 4.1.1 with previous version 3.1.2 dated 2016-09-20

Title: Create Summary Tables for Statistical Reports
Description: Contains functions for creating various types of summary tables, e.g. comparing characteristics across levels of a categorical variable and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen <vandomed@gmail.com>

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Package RNifti updated to version 0.11.0 with previous version 0.10.0 dated 2018-10-19

Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the NIfTI-1 and ANALYZE-7.5 formats, with seamless synchronisation between compiled C and interpreted R code. Also provides a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration.
Author: Jon Clayden [cre, aut], Bob Cox [aut], Mark Jenkinson [aut], Matt Hall [ctb], Rick Reynolds [ctb], Kate Fissell [ctb], Jean-loup Gailly [cph], Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>

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 RNifti-0.11.0/RNifti/NEWS                                                                                         |   27 
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 RNifti-0.11.0/RNifti/man/internalImage.Rd                                                                         |   19 
 RNifti-0.11.0/RNifti/src/main.cpp                                                                                 |  122 
 RNifti-0.11.0/RNifti/src/znzlib/znzlib.c                                                                          |    2 
 RNifti-0.11.0/RNifti/tests/testthat/test-05-nifti.R                                                               |   40 
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 184 files changed, 2538 insertions(+), 2105 deletions(-)

More information about RNifti at CRAN
Permanent link

New package rjdqa with initial version 0.1.0
Package: rjdqa
Type: Package
Title: Quality Assessment for Seasonal Adjustment
Version: 0.1.0
Authors@R: c( person("Alain", "Quartier-la-Tente", role = c("aut", "cre"), email = "alain.quartier@yahoo.fr"))
Description: Add-in to the 'RJDemetra' package on seasonal adjustments. It allows to produce quality assessments outputs (dashboards, quality report matrix, etc.).
License: EUPL
Depends: R (>= 3.1.1), RJDemetra,
Imports: plotrix, utils, graphics, stats
Encoding: UTF-8
URL: https://github.com/AQLT/rjdqa
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-06-16 08:36:41 UTC; alainquartierlatente
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Repository: CRAN
Date/Publication: 2019-06-17 16:30:03 UTC

More information about rjdqa at CRAN
Permanent link

New package quietR with initial version 0.1.0
Package: quietR
Type: Package
Title: Simplify Output Verbosity
Version: 0.1.0
Authors@R: person("Thomas", "Johnson", email = "thomascjohnson@gmail.com", role = c("aut", "cre"))
Maintainer: Thomas Johnson <thomascjohnson@gmail.com>
Description: Simplifies output suppression logic in R packages, as it's common to develop some form of it in R. 'quietR' intends to simplify that problem and allow a set of simple toggle functions to be used to suppress console output.
License: MIT + file LICENSE
URL: https://github.com/thomascjohnson/quietR
BugReports: https://github.com/thomascjohnson/quietR/issues
Encoding: UTF-8
LazyData: true
Suggests: testthat
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-06-16 19:21:14 UTC; thom
Author: Thomas Johnson [aut, cre]
Repository: CRAN
Date/Publication: 2019-06-17 16:40:03 UTC

More information about quietR at CRAN
Permanent link

New package roxygen2md with initial version 1.0.0
Package: roxygen2md
Title: 'Roxygen' to 'Markdown'
Version: 1.0.0
Date: 2019-05-29
Authors@R: c(person(given = "Kirill", family = "Müller", role = c("aut", "cre"), email = "krlmlr+r@mailbox.org"), person(given = "Heather", family = "Turner", role = "ctb"))
Description: Converts elements of 'roxygen' documentation to 'markdown'.
License: GPL-3
URL: https://roxygen2md.r-lib.org, https://github.com/r-lib/roxygen2md
BugReports: https://github.com/r-lib/roxygen2md/issues
Imports: desc, devtools, enc, rex, rlang, tibble, usethis, withr
Suggests: rstudioapi, testthat
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-06-15 13:49:43 UTC; kirill
Author: Kirill Müller [aut, cre], Heather Turner [ctb]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Repository: CRAN
Date/Publication: 2019-06-17 15:40:03 UTC

More information about roxygen2md at CRAN
Permanent link

New package rless with initial version 0.1.0
Package: rless
Title: Leaner Style Sheets
Version: 0.1.0
Authors@R: c( person("Jonas", "Vaclavek", , "jonas.vaclavek@gmail.com", role = c("aut", "cre")), person("Jakub", "Kuzilek", role = c("aut")) )
Description: Converts LESS to CSS. It uses V8 engine, where LESS parser is run. Functions for LESS text, file or folder conversion are provided.
Depends: R (>= 3.4)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: V8
RoxygenNote: 6.1.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-06-15 18:24:05 UTC; Jerryna
Author: Jonas Vaclavek [aut, cre], Jakub Kuzilek [aut]
Maintainer: Jonas Vaclavek <jonas.vaclavek@gmail.com>
Repository: CRAN
Date/Publication: 2019-06-17 16:00:02 UTC

More information about rless at CRAN
Permanent link

Package R.temis updated to version 0.1.2 with previous version 0.1.1 dated 2019-01-07

Title: Integrated Text Mining Solution
Description: An integrated solution to perform a series of text mining tasks such as importing and cleaning a corpus, and analyses like terms and documents counts, lexical summary, terms co-occurrences and documents similarity measures, graphs of terms, correspondence analysis and hierarchical clustering. Corpora can be imported from spreadsheet-like files, directories of raw text files, as well as from 'Dow Jones Factiva', 'LexisNexis', 'Europresse' and 'Alceste' files.
Author: Milan Bouchet-Valat [aut, cre], Gilles Bastin [aut], Antoine Chollet [aut]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>

Diff between R.temis versions 0.1.1 dated 2019-01-07 and 0.1.2 dated 2019-06-17

 DESCRIPTION                |    8 ++-
 MD5                        |   18 ++++----
 NAMESPACE                  |    1 
 NEWS                       |only
 R/corpus.R                 |   91 +++++++++++++++++++++++++++++++++++++++++++++
 R/matrix.R                 |   10 ++--
 R/terms.R                  |    2 
 man/build_dtm.Rd           |    8 ++-
 man/characteristic_docs.Rd |only
 man/frequent_terms.Rd      |    1 
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More information about R.temis at CRAN
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Package fastDummies updated to version 1.4.0 with previous version 1.3.0 dated 2019-04-22

Title: Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables
Description: Creates dummy columns from columns that have categorical variables (character or factor types). You can also specify which columns to make dummies out of, or which columns to ignore. Also creates dummy rows from character, factor, and Date columns. This package provides a significant speed increase from creating dummy variables through model.matrix().
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>), Benjamin Schlegel [ctb]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>

Diff between fastDummies versions 1.3.0 dated 2019-04-22 and 1.4.0 dated 2019-06-17

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Package cusum updated to version 0.3.0 with previous version 0.2.1 dated 2019-03-19

Title: CUSUM Charts for Monitoring of Hospital Performance
Description: Provides functions for constructing and evaluating CUSUM charts and RA-CUSUM charts with focus on false signal probability.
Author: Lena Hubig [aut, cre] (<https://orcid.org/0000-0002-9454-1232>)
Maintainer: Lena Hubig <cs@lenahubig.de>

Diff between cusum versions 0.2.1 dated 2019-03-19 and 0.3.0 dated 2019-06-17

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More information about cusum at CRAN
Permanent link

New package vivo with initial version 0.1.0
Package: vivo
Title: Local Variable Importance via Oscillations of Ceteris Paribus Profiles
Version: 0.1.0
Authors@R: c(person("Anna", "Kozak", email = "anna1993kozak@gmail.com", role = c("aut", "cre")), person("Przemyslaw", "Biecek", role = c("aut", "ths")))
Description: Provides an easy to calculate variable importance measure based on Ceteris Paribus plot and is calculated in eight variants. We obtain eight variants measure through the possible combinations of three parameters such as absolute_deviation, point and density.
Depends: R (>= 3.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: ggplot2, dplyr, ingredients
Suggests: knitr, rmarkdown, DALEX, mlbench, randomForest, gridExtra, grid, lattice, testthat
VignetteBuilder: knitr
RoxygenNote: 6.1.1
URL: https://github.com/MI2DataLab/vivo
BugReports: https://github.com/MI2DataLab/vivo/issues
NeedsCompilation: no
Packaged: 2019-06-15 10:15:18 UTC; Anna Kozak
Author: Anna Kozak [aut, cre], Przemyslaw Biecek [aut, ths]
Maintainer: Anna Kozak <anna1993kozak@gmail.com>
Repository: CRAN
Date/Publication: 2019-06-17 14:30:03 UTC

More information about vivo at CRAN
Permanent link

New package git2rdata with initial version 0.1
Package: git2rdata
Title: Store and Retrieve Data.frames in a Git Repository
Version: 0.1
Authors@R: c( person( "Thierry", "Onkelinx", role = c("aut", "cre"), email = "thierry.onkelinx@inbo.be", comment = c(ORCID = "0000-0001-8804-4216")), person( "Floris", "Vanderhaeghe", role = "ctb", email = "floris.vanderhaeghe@inbo.be", comment = c(ORCID = "0000-0002-6378-6229")), person( "Peter", "Desmet", role = "ctb", email = "peter.desmet@inbo.be", comment = c(ORCID = "0000-0002-8442-8025")), person( "Research Institute for Nature and Forest", role = c("cph", "fnd"), email = "info@inbo.be"))
Description: Make versioning of data.frame easy and efficient using git repositories.
Depends: R (>= 3.5.0)
Imports: assertthat, git2r (>= 0.23.0), methods, yaml
Suggests: spelling, ggplot2, knitr, microbenchmark, rmarkdown, testthat
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
URL: https://github.com/ropensci/git2rdata, https://doi.org/10.5281/zenodo.1485309
BugReports: https://github.com/ropensci/git2rdata/issues
Collate: 'clean_data_path.R' 'git2rdata-package.R' 'write_vc.R' 'is_git2rdata.R' 'is_git2rmeta.R' 'list_data.R' 'meta.R' 'prune.R' 'read_vc.R' 'recent_commit.R' 'reexport.R' 'relabel.R' 'upgrade_data.R'
VignetteBuilder: knitr
Language: en-GB
NeedsCompilation: no
Packaged: 2019-06-15 09:44:56 UTC; thierry_onkelinx
Author: Thierry Onkelinx [aut, cre] (<https://orcid.org/0000-0001-8804-4216>), Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>), Peter Desmet [ctb] (<https://orcid.org/0000-0002-8442-8025>), Research Institute for Nature and Forest [cph, fnd]
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Repository: CRAN
Date/Publication: 2019-06-17 14:20:04 UTC

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Package seqHMM updated to version 1.0.13 with previous version 1.0.12 dated 2019-04-11

Title: Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent) Markov models and mixture hidden Markov models for social sequence data and other categorical time series. Also some more restricted versions of these type of models are available: Markov models, mixture Markov models, and latent class models. The package supports models for one or multiple subjects with one or multiple parallel sequences (channels). External covariates can be added to explain cluster membership in mixture models. The package provides functions for evaluating and comparing models, as well as functions for visualizing of multichannel sequence data and hidden Markov models. Models are estimated using maximum likelihood via the EM algorithm and/or direct numerical maximization with analytical gradients. All main algorithms are written in C++ with support for parallel computation. Documentation is available via several vignettes in this page, and the paper by Helske and Helske (2019, <doi:10.18637/jss.v088.i03>).
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>), Satu Helske [aut] (<https://orcid.org/0000-0003-0532-0153>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>

Diff between seqHMM versions 1.0.12 dated 2019-04-11 and 1.0.13 dated 2019-06-17

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More information about seqHMM at CRAN
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Package quantmod updated to version 0.4-15 with previous version 0.4-14 dated 2019-03-24

Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Wouter Thielen [ctb], Paul Teetor [ctb], Steve Bronder [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>

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More information about quantmod at CRAN
Permanent link

Package sjmisc updated to version 2.8.1 with previous version 2.8.0 dated 2019-06-11

Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. The data transformation functions also support labelled data, and all integrate seamlessly into a 'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjmisc versions 2.8.0 dated 2019-06-11 and 2.8.1 dated 2019-06-17

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Package oce updated to version 1.1-1 with previous version 1.0-1 dated 2018-10-04

Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively in Dan Kelley's book Oceanographic Analysis with R, published in 2018 by 'Springer-Verlag' with ISBN 978-1-4939-8842-6.
Author: Dan Kelley [aut, cre] (<https://orcid.org/0000-0001-7808-5911>), Clark Richards [aut] (<https://orcid.org/0000-0002-7833-206X>), Chantelle Layton [ctb] (<https://orcid.org/0000-0002-3199-5763>, curl() coauthor), British Geological Survey [ctb, cph] (magnetic-field subroutine)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>

Diff between oce versions 1.0-1 dated 2018-10-04 and 1.1-1 dated 2019-06-17

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 oce-1.1-1/oce/man/enuToOther.Rd                          |   16 
 oce-1.1-1/oce/man/enuToOtherAdp.Rd                       |   16 
 oce-1.1-1/oce/man/enuToOtherAdv.Rd                       |    4 
 oce-1.1-1/oce/man/findBottom.Rd                          |    4 
 oce-1.1-1/oce/man/formatPosition.Rd                      |    1 
 oce-1.1-1/oce/man/g1sst-class.Rd                         |    2 
 oce-1.1-1/oce/man/geodDist.Rd                            |    3 
 oce-1.1-1/oce/man/geodGc.Rd                              |    2 
 oce-1.1-1/oce/man/geodXy.Rd                              |    2 
 oce-1.1-1/oce/man/gps-class.Rd                           |    4 
 oce-1.1-1/oce/man/handleFlags-adp-method.Rd              |   17 
 oce-1.1-1/oce/man/handleFlags-argo-method.Rd             |    6 
 oce-1.1-1/oce/man/handleFlags-ctd-method.Rd              |    6 
 oce-1.1-1/oce/man/handleFlags-section-method.Rd          |    6 
 oce-1.1-1/oce/man/handleFlags.Rd                         |    2 
 oce-1.1-1/oce/man/handleFlagsInternal.Rd                 |only
 oce-1.1-1/oce/man/imagep.Rd                              |   28 
 oce-1.1-1/oce/man/initialize-ctd-method.Rd               |    4 
 oce-1.1-1/oce/man/initializeFlagScheme-ctd-method.Rd     |   19 
 oce-1.1-1/oce/man/initializeFlagScheme-oce-method.Rd     |   20 
 oce-1.1-1/oce/man/initializeFlagScheme-section-method.Rd |   23 
 oce-1.1-1/oce/man/initializeFlagScheme.Rd                |   21 
 oce-1.1-1/oce/man/initializeFlagSchemeInternal.Rd        |only
 oce-1.1-1/oce/man/initializeFlags-adp-method.Rd          |    2 
 oce-1.1-1/oce/man/initializeFlags-oce-method.Rd          |    2 
 oce-1.1-1/oce/man/initializeFlags.Rd                     |    2 
 oce-1.1-1/oce/man/initializeFlagsInternal.Rd             |only
 oce-1.1-1/oce/man/interpBarnes.Rd                        |    4 
 oce-1.1-1/oce/man/is.ad2cp.Rd                            |only
 oce-1.1-1/oce/man/julianCenturyAnomaly.Rd                |    4 
 oce-1.1-1/oce/man/ladp-class.Rd                          |    4 
 oce-1.1-1/oce/man/landsat-class.Rd                       |   11 
 oce-1.1-1/oce/man/landsat.Rd                             |    8 
 oce-1.1-1/oce/man/landsatAdd.Rd                          |    4 
 oce-1.1-1/oce/man/landsatTrim.Rd                         |    4 
 oce-1.1-1/oce/man/lisst-class.Rd                         |    8 
 oce-1.1-1/oce/man/lisst.Rd                               |    4 
 oce-1.1-1/oce/man/lobo-class.Rd                          |    9 
 oce-1.1-1/oce/man/lobo.Rd                                |   11 
 oce-1.1-1/oce/man/lonlat2map.Rd                          |   23 
 oce-1.1-1/oce/man/lonlat2utm.Rd                          |    5 
 oce-1.1-1/oce/man/lookWithin.Rd                          |   43 
 oce-1.1-1/oce/man/magneticField.Rd                       |   69 
 oce-1.1-1/oce/man/makeFilter.Rd                          |    3 
 oce-1.1-1/oce/man/map2lonlat.Rd                          |   21 
 oce-1.1-1/oce/man/mapArrows.Rd                           |    2 
 oce-1.1-1/oce/man/mapAxis.Rd                             |    2 
 oce-1.1-1/oce/man/mapContour.Rd                          |   86 
 oce-1.1-1/oce/man/mapCoordinateSystem.Rd                 |    3 
 oce-1.1-1/oce/man/mapDirectionField.Rd                   |    4 
 oce-1.1-1/oce/man/mapGrid.Rd                             |    3 
 oce-1.1-1/oce/man/mapImage.Rd                            |    2 
 oce-1.1-1/oce/man/mapLines.Rd                            |    2 
 oce-1.1-1/oce/man/mapLongitudeLatitudeXY.Rd              |    2 
 oce-1.1-1/oce/man/mapPlot.Rd                             |  173 -
 oce-1.1-1/oce/man/mapPoints.Rd                           |    2 
 oce-1.1-1/oce/man/mapScalebar.Rd                         |    3 
 oce-1.1-1/oce/man/mapText.Rd                             |    3 
 oce-1.1-1/oce/man/mapTissot.Rd                           |    5 
 oce-1.1-1/oce/man/met-class.Rd                           |    8 
 oce-1.1-1/oce/man/met.Rd                                 |    8 
 oce-1.1-1/oce/man/moonAngle.Rd                           |    4 
 oce-1.1-1/oce/man/numberAsPOSIXct.Rd                     |    3 
 oce-1.1-1/oce/man/oce-class.Rd                           |    4 
 oce-1.1-1/oce/man/oce-deprecated.Rd                      |    3 
 oce-1.1-1/oce/man/oce.contour.Rd                         |    2 
 oce-1.1-1/oce/man/oce.plot.ts.Rd                         |   60 
 oce-1.1-1/oce/man/oceCRS.Rd                              |    2 
 oce-1.1-1/oce/man/oceDeleteData.Rd                       |    2 
 oce-1.1-1/oce/man/oceDeleteMetadata.Rd                   |    2 
 oce-1.1-1/oce/man/oceGetData.Rd                          |    2 
 oce-1.1-1/oce/man/oceGetMetadata.Rd                      |    2 
 oce-1.1-1/oce/man/oceMagic.Rd                            |    2 
 oce-1.1-1/oce/man/oceNames2whpNames.Rd                   |    4 
 oce-1.1-1/oce/man/oceProject.Rd                          |only
 oce-1.1-1/oce/man/oceSetData.Rd                          |    4 
 oce-1.1-1/oce/man/oceSetMetadata.Rd                      |    4 
 oce-1.1-1/oce/man/oceUnits2whpUnits.Rd                   |    4 
 oce-1.1-1/oce/man/ocecolors.Rd                           |    4 
 oce-1.1-1/oce/man/odf-class.Rd                           |    8 
 oce-1.1-1/oce/man/plot-adp-method.Rd                     |   77 
 oce-1.1-1/oce/man/plot-adv-method.Rd                     |    8 
 oce-1.1-1/oce/man/plot-amsr-method.Rd                    |   10 
 oce-1.1-1/oce/man/plot-argo-method.Rd                    |   14 
 oce-1.1-1/oce/man/plot-bremen-method.Rd                  |    8 
 oce-1.1-1/oce/man/plot-cm-method.Rd                      |    8 
 oce-1.1-1/oce/man/plot-coastline-method.Rd               |   10 
 oce-1.1-1/oce/man/plot-ctd-method.Rd                     |   28 
 oce-1.1-1/oce/man/plot-echosounder-method.Rd             |    6 
 oce-1.1-1/oce/man/plot-gps-method.Rd                     |    8 
 oce-1.1-1/oce/man/plot-ladp-method.Rd                    |    8 
 oce-1.1-1/oce/man/plot-landsat-method.Rd                 |    8 
 oce-1.1-1/oce/man/plot-lisst-method.Rd                   |    8 
 oce-1.1-1/oce/man/plot-lobo-method.Rd                    |    9 
 oce-1.1-1/oce/man/plot-met-method.Rd                     |    8 
 oce-1.1-1/oce/man/plot-odf-method.Rd                     |    8 
 oce-1.1-1/oce/man/plot-rsk-method.Rd                     |    8 
 oce-1.1-1/oce/man/plot-satellite-method.Rd               |    6 
 oce-1.1-1/oce/man/plot-sealevel-method.Rd                |    8 
 oce-1.1-1/oce/man/plot-section-method.Rd                 |    8 
 oce-1.1-1/oce/man/plot-tidem-method.Rd                   |   12 
 oce-1.1-1/oce/man/plot-topo-method.Rd                    |    8 
 oce-1.1-1/oce/man/plot-windrose-method.Rd                |    8 
 oce-1.1-1/oce/man/plotProfile.Rd                         |    8 
 oce-1.1-1/oce/man/plotScan.Rd                            |   14 
 oce-1.1-1/oce/man/plotTS.Rd                              |    8 
 oce-1.1-1/oce/man/predict.tidem.Rd                       |    8 
 oce-1.1-1/oce/man/presentTime.Rd                         |only
 oce-1.1-1/oce/man/processingLogItem.Rd                   |    3 
 oce-1.1-1/oce/man/read.adp.Rd                            |   26 
 oce-1.1-1/oce/man/read.adp.ad2cp.Rd                      |only
 oce-1.1-1/oce/man/read.adp.nortek.Rd                     |   13 
 oce-1.1-1/oce/man/read.adp.rdi.Rd                        |   88 
 oce-1.1-1/oce/man/read.adp.sontek.Rd                     |   14 
 oce-1.1-1/oce/man/read.adp.sontek.serial.Rd              |   12 
 oce-1.1-1/oce/man/read.adv.Rd                            |    6 
 oce-1.1-1/oce/man/read.adv.nortek.Rd                     |    6 
 oce-1.1-1/oce/man/read.adv.sontek.adr.Rd                 |    6 
 oce-1.1-1/oce/man/read.adv.sontek.serial.Rd              |    6 
 oce-1.1-1/oce/man/read.adv.sontek.text.Rd                |    6 
 oce-1.1-1/oce/man/read.amsr.Rd                           |    6 
 oce-1.1-1/oce/man/read.aquadopp.Rd                       |   16 
 oce-1.1-1/oce/man/read.aquadoppHR.Rd                     |   16 
 oce-1.1-1/oce/man/read.aquadoppProfiler.Rd               |   16 
 oce-1.1-1/oce/man/read.argo.Rd                           |   66 
 oce-1.1-1/oce/man/read.bremen.Rd                         |    4 
 oce-1.1-1/oce/man/read.cm.Rd                             |    4 
 oce-1.1-1/oce/man/read.coastline.openstreetmap.Rd        |    4 
 oce-1.1-1/oce/man/read.coastline.shapefile.Rd            |    6 
 oce-1.1-1/oce/man/read.ctd.Rd                            |   29 
 oce-1.1-1/oce/man/read.ctd.itp.Rd                        |   28 
 oce-1.1-1/oce/man/read.ctd.odf.Rd                        |   34 
 oce-1.1-1/oce/man/read.ctd.sbe.Rd                        |   78 
 oce-1.1-1/oce/man/read.ctd.woce.Rd                       |   28 
 oce-1.1-1/oce/man/read.ctd.woce.other.Rd                 |   28 
 oce-1.1-1/oce/man/read.echosounder.Rd                    |    6 
 oce-1.1-1/oce/man/read.g1sst.Rd                          |    8 
 oce-1.1-1/oce/man/read.gps.Rd                            |    4 
 oce-1.1-1/oce/man/read.landsat.Rd                        |    4 
 oce-1.1-1/oce/man/read.lisst.Rd                          |    4 
 oce-1.1-1/oce/man/read.lobo.Rd                           |    9 
 oce-1.1-1/oce/man/read.met.Rd                            |    4 
 oce-1.1-1/oce/man/read.odf.Rd                            |   14 
 oce-1.1-1/oce/man/read.rsk.Rd                            |    4 
 oce-1.1-1/oce/man/read.sealevel.Rd                       |    4 
 oce-1.1-1/oce/man/read.section.Rd                        |    4 
 oce-1.1-1/oce/man/read.topo.Rd                           |    4 
 oce-1.1-1/oce/man/rotateAboutZ.Rd                        |   20 
 oce-1.1-1/oce/man/rsk-class.Rd                           |    8 
 oce-1.1-1/oce/man/rsk.Rd                                 |    8 
 oce-1.1-1/oce/man/rskPatm.Rd                             |    4 
 oce-1.1-1/oce/man/rskToc.Rd                              |    4 
 oce-1.1-1/oce/man/sealevel-class.Rd                      |    8 
 oce-1.1-1/oce/man/sealevel.Rd                            |    8 
 oce-1.1-1/oce/man/sealevelTuktoyaktuk.Rd                 |   10 
 oce-1.1-1/oce/man/section-class.Rd                       |    8 
 oce-1.1-1/oce/man/section.Rd                             |    8 
 oce-1.1-1/oce/man/sectionAddStation.Rd                   |    4 
 oce-1.1-1/oce/man/sectionGrid.Rd                         |   52 
 oce-1.1-1/oce/man/sectionSmooth.Rd                       |  173 +
 oce-1.1-1/oce/man/sectionSort.Rd                         |    4 
 oce-1.1-1/oce/man/setFlags-adp-method.Rd                 |   14 
 oce-1.1-1/oce/man/setFlags-ctd-method.Rd                 |    6 
 oce-1.1-1/oce/man/setFlags-oce-method.Rd                 |    2 
 oce-1.1-1/oce/man/setFlags.Rd                            |    2 
 oce-1.1-1/oce/man/standardDepths.Rd                      |   41 
 oce-1.1-1/oce/man/sub-sub-adp-method.Rd                  |   87 
 oce-1.1-1/oce/man/sub-sub-adv-method.Rd                  |   80 
 oce-1.1-1/oce/man/sub-sub-amsr-method.Rd                 |   87 
 oce-1.1-1/oce/man/sub-sub-argo-method.Rd                 |  127 -
 oce-1.1-1/oce/man/sub-sub-bremen-method.Rd               |   78 
 oce-1.1-1/oce/man/sub-sub-cm-method.Rd                   |   78 
 oce-1.1-1/oce/man/sub-sub-coastline-method.Rd            |   78 
 oce-1.1-1/oce/man/sub-sub-ctd-method.Rd                  |  103 
 oce-1.1-1/oce/man/sub-sub-echosounder-method.Rd          |   80 
 oce-1.1-1/oce/man/sub-sub-g1sst-method.Rd                |   78 
 oce-1.1-1/oce/man/sub-sub-gps-method.Rd                  |   78 
 oce-1.1-1/oce/man/sub-sub-ladp-method.Rd                 |   80 
 oce-1.1-1/oce/man/sub-sub-landsat-method.Rd              |   80 
 oce-1.1-1/oce/man/sub-sub-lisst-method.Rd                |   78 
 oce-1.1-1/oce/man/sub-sub-lobo-method.Rd                 |   79 
 oce-1.1-1/oce/man/sub-sub-met-method.Rd                  |   77 
 oce-1.1-1/oce/man/sub-sub-oce-method.Rd                  |  130 -
 oce-1.1-1/oce/man/sub-sub-odf-method.Rd                  |   77 
 oce-1.1-1/oce/man/sub-sub-rsk-method.Rd                  |   77 
 oce-1.1-1/oce/man/sub-sub-sealevel-method.Rd             |   78 
 oce-1.1-1/oce/man/sub-sub-section-method.Rd              |   80 
 oce-1.1-1/oce/man/sub-sub-tidem-method.Rd                |   82 
 oce-1.1-1/oce/man/sub-sub-topo-method.Rd                 |   80 
 oce-1.1-1/oce/man/sub-sub-windrose-method.Rd             |   78 
 oce-1.1-1/oce/man/sub-subset-adp-method.Rd               |   15 
 oce-1.1-1/oce/man/sub-subset-adv-method.Rd               |   78 
 oce-1.1-1/oce/man/sub-subset-amsr-method.Rd              |    9 
 oce-1.1-1/oce/man/sub-subset-argo-method.Rd              |    8 
 oce-1.1-1/oce/man/sub-subset-bremen-method.Rd            |    8 
 oce-1.1-1/oce/man/sub-subset-cm-method.Rd                |    8 
 oce-1.1-1/oce/man/sub-subset-coastline-method.Rd         |    8 
 oce-1.1-1/oce/man/sub-subset-ctd-method.Rd               |    8 
 oce-1.1-1/oce/man/sub-subset-echosounder-method.Rd       |    8 
 oce-1.1-1/oce/man/sub-subset-g1sst-method.Rd             |    8 
 oce-1.1-1/oce/man/sub-subset-gps-method.Rd               |    8 
 oce-1.1-1/oce/man/sub-subset-ladp-method.Rd              |    8 
 oce-1.1-1/oce/man/sub-subset-landsat-method.Rd           |    8 
 oce-1.1-1/oce/man/sub-subset-lisst-method.Rd             |    8 
 oce-1.1-1/oce/man/sub-subset-lobo-method.Rd              |    9 
 oce-1.1-1/oce/man/sub-subset-met-method.Rd               |    8 
 oce-1.1-1/oce/man/sub-subset-oce-method.Rd               |    4 
 oce-1.1-1/oce/man/sub-subset-odf-method.Rd               |    8 
 oce-1.1-1/oce/man/sub-subset-rsk-method.Rd               |    8 
 oce-1.1-1/oce/man/sub-subset-sealevel-method.Rd          |    8 
 oce-1.1-1/oce/man/sub-subset-section-method.Rd           |   30 
 oce-1.1-1/oce/man/sub-subset-tidem-method.Rd             |   12 
 oce-1.1-1/oce/man/sub-subset-topo-method.Rd              |    8 
 oce-1.1-1/oce/man/sub-subset-windrose-method.Rd          |    8 
 oce-1.1-1/oce/man/subset-adp-method.Rd                   |   27 
 oce-1.1-1/oce/man/subset-adv-method.Rd                   |    8 
 oce-1.1-1/oce/man/subset-amsr-method.Rd                  |   10 
 oce-1.1-1/oce/man/subset-argo-method.Rd                  |    8 
 oce-1.1-1/oce/man/subset-cm-method.Rd                    |    8 
 oce-1.1-1/oce/man/subset-coastline-method.Rd             |   47 
 oce-1.1-1/oce/man/subset-ctd-method.Rd                   |    8 
 oce-1.1-1/oce/man/subset-echosounder-method.Rd           |    8 
 oce-1.1-1/oce/man/subset-lobo-method.Rd                  |   10 
 oce-1.1-1/oce/man/subset-met-method.Rd                   |    8 
 oce-1.1-1/oce/man/subset-oce-method.Rd                   |    4 
 oce-1.1-1/oce/man/subset-odf-method.Rd                   |    8 
 oce-1.1-1/oce/man/subset-rsk-method.Rd                   |    8 
 oce-1.1-1/oce/man/subset-sealevel-method.Rd              |    8 
 oce-1.1-1/oce/man/subset-section-method.Rd               |    8 
 oce-1.1-1/oce/man/subset-topo-method.Rd                  |    8 
 oce-1.1-1/oce/man/summary-adp-method.Rd                  |   12 
 oce-1.1-1/oce/man/summary-adv-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-amsr-method.Rd                 |    6 
 oce-1.1-1/oce/man/summary-argo-method.Rd                 |    4 
 oce-1.1-1/oce/man/summary-bremen-method.Rd               |    4 
 oce-1.1-1/oce/man/summary-cm-method.Rd                   |    4 
 oce-1.1-1/oce/man/summary-coastline-method.Rd            |    4 
 oce-1.1-1/oce/man/summary-ctd-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-echosounder-method.Rd          |    4 
 oce-1.1-1/oce/man/summary-gps-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-ladp-method.Rd                 |    4 
 oce-1.1-1/oce/man/summary-landsat-method.Rd              |    4 
 oce-1.1-1/oce/man/summary-lisst-method.Rd                |    4 
 oce-1.1-1/oce/man/summary-lobo-method.Rd                 |    6 
 oce-1.1-1/oce/man/summary-met-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-odf-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-rsk-method.Rd                  |    4 
 oce-1.1-1/oce/man/summary-sealevel-method.Rd             |    4 
 oce-1.1-1/oce/man/summary-section-method.Rd              |    4 
 oce-1.1-1/oce/man/summary-tidem-method.Rd                |    9 
 oce-1.1-1/oce/man/summary-topo-method.Rd                 |    4 
 oce-1.1-1/oce/man/summary-windrose-method.Rd             |    4 
 oce-1.1-1/oce/man/sunAngle.Rd                            |    2 
 oce-1.1-1/oce/man/swN2.Rd                                |   51 
 oce-1.1-1/oce/man/swSCTp.Rd                              |   46 
 oce-1.1-1/oce/man/swSpice.Rd                             |   66 
 oce-1.1-1/oce/man/swTFreeze.Rd                           |   70 
 oce-1.1-1/oce/man/tidedata.Rd                            |    9 
 oce-1.1-1/oce/man/tidem-class.Rd                         |   13 
 oce-1.1-1/oce/man/tidem.Rd                               |    9 
 oce-1.1-1/oce/man/tidemAstron.Rd                         |   10 
 oce-1.1-1/oce/man/tidemVuf.Rd                            |   10 
 oce-1.1-1/oce/man/toEnu.Rd                               |   16 
 oce-1.1-1/oce/man/toEnuAdp.Rd                            |   12 
 oce-1.1-1/oce/man/toEnuAdv.Rd                            |    4 
 oce-1.1-1/oce/man/topo-class.Rd                          |    8 
 oce-1.1-1/oce/man/topoInterpolate.Rd                     |    4 
 oce-1.1-1/oce/man/topoWorld.Rd                           |   49 
 oce-1.1-1/oce/man/utm2lonlat.Rd                          |    5 
 oce-1.1-1/oce/man/velocityStatistics.Rd                  |   19 
 oce-1.1-1/oce/man/webtide.Rd                             |   24 
 oce-1.1-1/oce/man/wind.Rd                                |    4 
 oce-1.1-1/oce/man/windrose-class.Rd                      |    8 
 oce-1.1-1/oce/man/woceNames2oceNames.Rd                  |    4 
 oce-1.1-1/oce/man/woceUnit2oceUnit.Rd                    |    4 
 oce-1.1-1/oce/man/write.ctd.Rd                           |    4 
 oce-1.1-1/oce/man/xyzToEnu.Rd                            |   24 
 oce-1.1-1/oce/man/xyzToEnuAdp.Rd                         |   27 
 oce-1.1-1/oce/man/xyzToEnuAdpAD2CP.Rd                    |only
 oce-1.1-1/oce/man/xyzToEnuAdv.Rd                         |    4 
 oce-1.1-1/oce/src/RcppExports.cpp                        |   12 
 oce-1.1-1/oce/src/ad2cp_ahrs.cpp                         |only
 oce-1.1-1/oce/src/curl.cpp                               |    2 
 oce-1.1-1/oce/src/interp_barnes.cpp                      |    2 
 oce-1.1-1/oce/src/ldc_ad2cp_in_file.cpp                  |   62 
 oce-1.1-1/oce/src/ldc_rdi_in_file.cpp                    |   12 
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Package tidymv updated to version 2.2.0 with previous version 2.1.0 dated 2019-04-25

Title: Tidy Model Visualisation for Generalised Additive Models
Description: Provides functions for visualising generalised additive models and getting predicted values using tidy tools from the 'tidyverse' packages.
Author: Stefano Coretta [aut, cre]
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>

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Package statnetWeb updated to version 0.5.5 with previous version 0.5.4 dated 2019-06-15

Title: A Graphical User Interface for Network Modeling with 'Statnet'
Description: A graphical user interface for network modeling with the 'statnet' software <https://github.com/statnet>.
Author: Martina Morris [cre, aut], Emily Beylerian [aut], Kirk Li [ctb], Samuel Jenness [ctb]
Maintainer: Martina Morris <morrism@uw.edu>

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Package pandocfilters updated to version 0.1-3 with previous version 0.1-1 dated 2016-04-27

Title: Pandoc Filters for R
Description: The document converter 'pandoc' <http://pandoc.org/> is widely used in the R community. One feature of 'pandoc' is that it can produce and consume JSON-formatted abstract syntax trees (AST). This allows to transform a given source document into JSON-formatted AST, alter it by so called filters and pass the altered JSON-formatted AST back to 'pandoc'. This package provides functions which allow to write such filters in native R code. Although this package is inspired by the Python package 'pandocfilters' <https://github.com/jgm/pandocfilters/>, it provides additional convenience functions which make it simple to use the 'pandocfilters' package as a report generator. Since 'pandocfilters' inherits most of it's functionality from 'pandoc' it can create documents in many formats (for more information see <http://pandoc.org/>) but is also bound to the same limitations as 'pandoc'.
Author: Florian Schwendinger [aut, cre], Kurt Hornik [aut], Andrie de Vries [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

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Package BART updated to version 2.5 with previous version 2.4 dated 2019-04-16

Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information on BART, see Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285> and Sparapani, Logan, McCulloch and Laud (2016) <doi:10.1002/sim.6893>.
Author: Robert McCulloch [aut], Rodney Sparapani [aut, cre], Robert Gramacy [aut], Charles Spanbauer [aut], Matthew Pratola [aut], Martyn Plummer [ctb], Nicky Best [ctb], Kate Cowles [ctb], Karen Vines [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>

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Package rotor updated to version 0.2.3 with previous version 0.2.2 dated 2019-05-28

Title: Log Rotation and Conditional Backups
Description: Conditionally rotate or back-up files based on their size or the date of the last backup; inspired by the 'Linux' utility 'logrotate'.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>

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Package npcure updated to version 0.1-4 with previous version 0.1-2 dated 2019-05-08

Title: Nonparametric Estimation in Mixture Cure Models
Description: Performs nonparametric estimation in mixture cure models, and significance tests for the cure probability. For details, see López-Cheda et al. (2017a) <doi:10.1016/j.csda.2016.08.002> and López-Cheda et al. (2017b) <doi:10.1007/s11749-016-0515-1>.
Author: Ignacio López-de-Ullibarri [aut, cre], Ana López-Cheda [aut], Maria Amalia Jácome [aut]
Maintainer: Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>

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Package changedetection updated to version 0.2.0 with previous version 0.1.0 dated 2019-04-04

Title: Nonparametric Change Detection in Multivariate Linear Relationships
Description: Contains implementation of the Nonparametric Splitting Algorithm (NSA), which estimates a set of structural change points (change dates) within a multivariate time-wise linear regression. Additionally, it contains utility functions to estimate corresponding changing linear model, moving energy distance and a change-detection test. For more information, see Malo et. al (2019) <arXiv:1805.08512v2>.
Author: Olga Gorskikh, Pekka Malo, Pauliina Ilmonen, Lauri Viitasaari, Joni Virta
Maintainer: Olga Gorskikh <olga.a.gorskikh@gmail.com>

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Package bootstrap updated to version 2019.6 with previous version 2017.2 dated 2017-02-27

Title: Functions for the Book "An Introduction to the Bootstrap"
Description: Software (bootstrap, cross-validation, jackknife) and data for the book "An Introduction to the Bootstrap" by B. Efron and R. Tibshirani, 1993, Chapman and Hall. This package is primarily provided for projects already based on it, and for support of the book. New projects should preferentially use the recommended package "boot".
Author: S original, from StatLib, by Rob Tibshirani. R port by Friedrich Leisch.
Maintainer: Scott Kostyshak <scott.kostyshak@gmail.com>

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Package Bergm updated to version 5.0.0 with previous version 4.2.0 dated 2018-09-25

Title: Bayesian Exponential Random Graph Models
Description: Bayesian analysis for exponential random graph models using advanced computational algorithms. More information can be found at: <https://acaimo.github.io/Bergm>.
Author: Alberto Caimo [aut, cre], Lampros Bouranis [aut], Robert Krause [aut] Nial Friel [ctb]
Maintainer: Alberto Caimo <acaimo.stats@gmail.com>

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Package rPackedBar updated to version 0.2.2 with previous version 0.2.1 dated 2019-03-18

Title: Packed Bar Charts with 'plotly'
Description: Packed bar charts are a variation of treemaps for visualizing skewed data. The concept was introduced by Xan Gregg at 'JMP'.
Author: Adam Spannbauer [aut, cre]
Maintainer: Adam Spannbauer <spannbaueradam@gmail.com>

Diff between rPackedBar versions 0.2.1 dated 2019-03-18 and 0.2.2 dated 2019-06-17

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Package politicaldata updated to version 0.1.3 with previous version 0.1.2 dated 2019-03-13

Title: Tools for Acquiring and Analyzing Political Data
Description: Provides useful functions for obtaining commonly-used data in political analysis and political science, including from sources such as the Comparative Agendas Project <https://www.comparativeagendas.net>, which provides data on politics and policy from 20+ countries, the MIT Election and Data Science Lab <https://www.electionlab.mit.edu>, and FiveThirtyEight <https://www.FiveThirtyEight.com>.
Author: G. Elliott Morris [aut, cre], Comparative Agendas Project [cph], MIT Election and Data Science Lab [cph], FiveThirtyEight.com [cph]
Maintainer: G. Elliott Morris <elliott@thecrosstab.com>

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Package nandb updated to version 2.0.2 with previous version 2.0.1 dated 2019-05-31

Title: Number and Brightness Image Analysis
Description: Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>), Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>), Sergi Padilla-Parra [ctb, ths, cph] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

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Package explore updated to version 0.4.3 with previous version 0.4.2 dated 2019-05-22

Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy to remember set of tidy functions for exploratory data analysis. Introduces two main verbs. describe() to describe a variable or table, explore() to graphically explore a variable or table.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>

Diff between explore versions 0.4.2 dated 2019-05-22 and 0.4.3 dated 2019-06-17

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Package comprehenr updated to version 0.6.7 with previous version 0.6.6 dated 2019-06-07

Title: List Comprehensions
Description: Provides 'Python'-style list comprehensions. List comprehension expressions use usual loops (for(), while() and repeat()) and usual if() as list producers. In many cases it gives more concise notation than standard "*apply + filter" strategy.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>

Diff between comprehenr versions 0.6.6 dated 2019-06-07 and 0.6.7 dated 2019-06-17

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