Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.10.13 dated 2019-06-05 and 8.10.14 dated 2019-06-26
dialrjars-8.10.13/dialrjars/inst/java/carrier-1.109.jar |only dialrjars-8.10.13/dialrjars/inst/java/geocoder-2.119.jar |only dialrjars-8.10.13/dialrjars/inst/java/libphonenumber-8.10.13.jar |only dialrjars-8.10.13/dialrjars/inst/java/prefixmapper-2.119.jar |only dialrjars-8.10.14/dialrjars/DESCRIPTION | 6 dialrjars-8.10.14/dialrjars/MD5 | 28 +- dialrjars-8.10.14/dialrjars/NAMESPACE | 6 dialrjars-8.10.14/dialrjars/NEWS.md | 122 +++++----- dialrjars-8.10.14/dialrjars/R/dialrjars.R | 6 dialrjars-8.10.14/dialrjars/README.md | 58 ++-- dialrjars-8.10.14/dialrjars/inst/COPYRIGHTS | 18 - dialrjars-8.10.14/dialrjars/inst/java/carrier-1.110.jar |only dialrjars-8.10.14/dialrjars/inst/java/geocoder-2.120.jar |only dialrjars-8.10.14/dialrjars/inst/java/libphonenumber-8.10.14.jar |only dialrjars-8.10.14/dialrjars/inst/java/prefixmapper-2.120.jar |only dialrjars-8.10.14/dialrjars/java/README | 14 - dialrjars-8.10.14/dialrjars/man/dialrjars-package.Rd | 66 ++--- dialrjars-8.10.14/dialrjars/tests/testthat.R | 8 dialrjars-8.10.14/dialrjars/tests/testthat/test-dialrjars.R | 76 +++--- 19 files changed, 209 insertions(+), 199 deletions(-)
Title: Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
NIFTI Format
Description: Functions for I/O, visualisation and analysis of functional Magnetic Resonance Imaging (fMRI) datasets stored in the ANALYZE or NIFTI format. Note that the latest version of XQuartz seems to be necessary under MacOS.
Author: Pierre Lafaye De Micheaux [aut, cre],
Jonathan L Marchini [aut]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between AnalyzeFMRI versions 1.1-18 dated 2019-05-17 and 1.1-19 dated 2019-06-26
DESCRIPTION | 8 - MD5 | 32 ++--- inst/HISTORY | 14 ++ man/analyze2nifti.Rd | 2 man/f.basic.hdr.list.create.Rd | 6 man/f.basic.hdr.nifti.list.create.Rd | 2 man/f.complete.hdr.nifti.list.create.Rd | 2 man/f.write.analyze.Rd | 2 man/f.write.list.to.hdr.Rd | 2 man/f.write.list.to.hdr.nifti.Rd | 2 man/f.write.nifti.Rd | 2 src/analyzeFMRI.c | 5 src/lsame.f | 2 src/lsame.unused | 2 src/sblas.unused | 34 ++--- src/slapack.unused | 10 - src/spatial.filters.linear.f | 195 +++++++++++++++----------------- 17 files changed, 174 insertions(+), 148 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.100.19 dated 2019-03-12 and 0.100.24 dated 2019-06-26
DESCRIPTION | 6 +-- MD5 | 20 +++++----- R/r3d.rgl.R | 2 - R/thigmophobe3d.R | 12 +++++- R/zzz.R | 2 - build/vignette.rds |binary inst/NEWS | 7 +++ inst/doc/WebGL.html | 49 ++++++++++++++------------ inst/doc/legacyWebGL.html | 85 +++++++++++++++++++++++----------------------- inst/doc/rgl.html | 19 +++++----- man/postscript.Rd | 4 ++ 11 files changed, 116 insertions(+), 90 deletions(-)
Title: Non-Parametric Concordance Coefficient
Description: A non-parametric test for multi-observer concordance and
differences between concordances in (un)balanced data.
Author: Rowan Kuiper [cre, aut],
Remco Hoogenboezem [aut],
Sjoerd Huisman [ctb],
Pieter Sonneveld [ths],
Mark van Duin [ths]
Maintainer: Rowan Kuiper <r.kuiper.emc@gmail.com>
Diff between nopaco versions 1.0.3 dated 2017-04-13 and 1.0.4 dated 2019-06-26
nopaco-1.0.3/nopaco/src/samplePsi.cpp |only nopaco-1.0.3/nopaco/src/samplePsi.h |only nopaco-1.0.4/nopaco/DESCRIPTION | 11 +- nopaco-1.0.4/nopaco/MD5 | 36 +++--- nopaco-1.0.4/nopaco/NEWS | 7 + nopaco-1.0.4/nopaco/R/concordance.test.R | 138 +++++++++++++------------- nopaco-1.0.4/nopaco/R/zzz.R | 20 --- nopaco-1.0.4/nopaco/build/vignette.rds |binary nopaco-1.0.4/nopaco/inst/doc/nopaco.R | 26 ++-- nopaco-1.0.4/nopaco/inst/doc/nopaco.Rnw | 5 nopaco-1.0.4/nopaco/inst/doc/nopaco.pdf |binary nopaco-1.0.4/nopaco/man/coef-methods.Rd | 1 nopaco-1.0.4/nopaco/man/concordance.test.Rd | 5 nopaco-1.0.4/nopaco/man/convertionMethods.Rd | 1 nopaco-1.0.4/nopaco/man/getPsi-methods.Rd | 1 nopaco-1.0.4/nopaco/src/bootstrapCI.cpp |only nopaco-1.0.4/nopaco/src/bootstrapCI.h |only nopaco-1.0.4/nopaco/src/exactdistribution.cpp | 1 nopaco-1.0.4/nopaco/src/getPsi.cpp | 3 nopaco-1.0.4/nopaco/src/register.cpp | 4 nopaco-1.0.4/nopaco/vignettes/nopaco.Rnw | 5 21 files changed, 132 insertions(+), 132 deletions(-)
Title: Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Description: Provides various tools for preprocessing Emission-Excitation-Matrix (EEM) for Parallel Factor Analysis (PARAFAC). Different
methods are also provided to calculate common metrics such as humification index and fluorescence index.
Author: Philippe Massicotte [aut, cre]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between eemR versions 0.1.5 dated 2017-05-08 and 1.0.1 dated 2019-06-26
eemR-0.1.5/eemR/man/summary.eem.Rd |only eemR-1.0.1/eemR/DESCRIPTION | 15 eemR-1.0.1/eemR/MD5 | 95 +-- eemR-1.0.1/eemR/NAMESPACE | 5 eemR-1.0.1/eemR/NEWS.md | 29 eemR-1.0.1/eemR/R/absorbance.R | 47 - eemR-1.0.1/eemR/R/eemR-package.R |only eemR-1.0.1/eemR/R/eem_correction.R | 263 ++++---- eemR-1.0.1/eemR/R/eem_export.R | 82 +- eemR-1.0.1/eemR/R/eem_import.R |only eemR-1.0.1/eemR/R/eem_metrics.R | 171 +++-- eemR-1.0.1/eemR/R/eem_read.R | 286 --------- eemR-1.0.1/eemR/R/eem_utils.R | 331 ++++------- eemR-1.0.1/eemR/R/importers.R |only eemR-1.0.1/eemR/README.md | 55 + eemR-1.0.1/eemR/build/vignette.rds |binary eemR-1.0.1/eemR/inst/doc/custom-import-function.R |only eemR-1.0.1/eemR/inst/doc/custom-import-function.Rmd |only eemR-1.0.1/eemR/inst/doc/custom-import-function.html |only eemR-1.0.1/eemR/inst/doc/introduction.R | 223 ++++--- eemR-1.0.1/eemR/inst/doc/introduction.Rmd | 231 ++++--- eemR-1.0.1/eemR/inst/doc/introduction.html | 505 ++++++++++++----- eemR-1.0.1/eemR/inst/extdata/custom_cary.csv |only eemR-1.0.1/eemR/inst/extdata/hitachi-f7000-fl |only eemR-1.0.1/eemR/man/absorbance.Rd | 6 eemR-1.0.1/eemR/man/eem.Rd | 14 eemR-1.0.1/eemR/man/eemR-package.Rd |only eemR-1.0.1/eemR/man/eem_bind.Rd | 2 eemR-1.0.1/eemR/man/eem_biological_index.Rd | 3 eemR-1.0.1/eemR/man/eem_coble_peaks.Rd | 3 eemR-1.0.1/eemR/man/eem_cut.Rd | 4 eemR-1.0.1/eemR/man/eem_export_matlab.Rd | 4 eemR-1.0.1/eemR/man/eem_extract.Rd | 3 eemR-1.0.1/eemR/man/eem_fluorescence_index.Rd | 2 eemR-1.0.1/eemR/man/eem_humification_index.Rd | 3 eemR-1.0.1/eemR/man/eem_inner_filter_effect.Rd | 7 eemR-1.0.1/eemR/man/eem_names-set.Rd | 3 eemR-1.0.1/eemR/man/eem_names.Rd | 3 eemR-1.0.1/eemR/man/eem_peaks.Rd |only eemR-1.0.1/eemR/man/eem_raman_normalisation.Rd | 6 eemR-1.0.1/eemR/man/eem_read.Rd | 9 eemR-1.0.1/eemR/man/eem_remove_blank.Rd | 10 eemR-1.0.1/eemR/man/eem_remove_scattering.Rd | 2 eemR-1.0.1/eemR/man/eem_set_wavelengths.Rd | 3 eemR-1.0.1/eemR/man/plot.eemlist.Rd | 2 eemR-1.0.1/eemR/man/print.eemlist.Rd | 2 eemR-1.0.1/eemR/man/summary.eemlist.Rd | 2 eemR-1.0.1/eemR/tests/testthat.R | 8 eemR-1.0.1/eemR/tests/testthat/test-blank-correction.R | 10 eemR-1.0.1/eemR/tests/testthat/test-metrics.R | 82 +- eemR-1.0.1/eemR/vignettes/biblio.bib | 1 eemR-1.0.1/eemR/vignettes/custom-import-function.Rmd |only eemR-1.0.1/eemR/vignettes/introduction.Rmd | 231 ++++--- eemR-1.0.1/eemR/vignettes/matrix.png |only eemR-1.0.1/eemR/vignettes/matrix.svg |only 55 files changed, 1455 insertions(+), 1308 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Interactive shiny application for analysis of educational tests and
their items.
Author: Patricia Martinkova [aut, cre],
Adela Hladka [aut],
Ondrej Leder [ctb],
Jakub Houdek [ctb],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.3.0 dated 2019-02-25 and 1.3.1 dated 2019-06-26
ShinyItemAnalysis-1.3.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/About.R |only ShinyItemAnalysis-1.3.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/Data.R |only ShinyItemAnalysis-1.3.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/IRT |only ShinyItemAnalysis-1.3.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/IRT.R |only ShinyItemAnalysis-1.3.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/toppage.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/DESCRIPTION | 22 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/MD5 | 133 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/NAMESPACE | 4 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/NEWS | 319 + ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/DDplot.R | 64 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/DistractorAnalysis.R | 95 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/ItemAnalysis.R | 31 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/dataMedical.R | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/dataMedicalgraded.R | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/dataMedicalkey.R | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/dataMedicaltest.R | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/gDisrim.R | 9 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/ggWrightMap.R | 31 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotAdjacent.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotCumulative.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotDIFLogistic.R | 40 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotDIFirt.R | 4 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotDistractorAnalysis.R | 60 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/plotMultinomial.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/R/startShinyItemAnalysis.R | 16 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/README.md | 14 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/HCI.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/HCIkey.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/HCItest.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/dataMedical.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/dataMedicalgraded.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/dataMedicalkey.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/data/dataMedicaltest.rda |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/counter.Rdata |binary ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/packages.sty |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reporthtml.Rmd | 234 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportpdf.Rmd | 422 - ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server.R | 116 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/DIF.R | 561 + ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/Data.R | 55 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/IRT.R | 2607 +++++---- ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/Regression.R | 751 ++ ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/Reliability.R | 12 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/Summary.R | 70 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/TraditionalAnalysis.R | 218 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server/Validity.R | 112 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/titlepage.sty | 16 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui.R | 2843 ---------- ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiAbout.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiDIF.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiData.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiIRT |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiIRT.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiReferences.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiRegression.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiReliability.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiReports.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiSetting.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiSummary.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiTraditionalAnalysis.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui/uiValidity.R |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/bootstrap.css | 29 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/math_in_tables.js |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/style.css | 1 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/toppage.js |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/DDplot.Rd | 19 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/DistractorAnalysis.Rd | 31 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/ItemAnalysis.Rd | 17 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/dataMedical.Rd | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/dataMedicalgraded.Rd | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/dataMedicalkey.Rd | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/dataMedicaltest.Rd | 6 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/gDiscrim.Rd | 9 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/ggWrightMap.Rd | 11 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotAdjacent.Rd |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotCumulative.Rd |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotDIFLogistic.Rd | 12 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotDIFirt.Rd | 4 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotDistractorAnalysis.Rd | 52 ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/plotMultinomial.Rd |only ShinyItemAnalysis-1.3.1/ShinyItemAnalysis/man/startShinyItemAnalysis.Rd | 14 81 files changed, 4208 insertions(+), 4898 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
Amadou Gaye [ctb] (<https://orcid.org/0000-0002-1180-2792>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 1.0.3 dated 2019-03-21 and 1.1.0 dated 2019-06-26
DESCRIPTION | 6 ++-- MD5 | 53 +++++++++++++++++++++------------------- NAMESPACE | 2 + R/opal.annotations.r |only R/opal.assign.r | 17 +++++++++--- R/opal.file.r | 8 ++++-- R/opal.r | 4 +++ R/opal.symbol.r | 11 ++++++-- README.md | 1 build/vignette.rds |binary inst/doc/opal-files.html | 9 ++++-- inst/doc/opal-projects.html | 9 ++++-- inst/doc/opal-rsession.html | 9 ++++-- man/opal.annotate.Rd |only man/opal.annotations.Rd |only man/opal.assign.table.Rd | 4 +-- man/opal.assign.table.tibble.Rd | 6 +++- man/opal.attribute_values.Rd | 4 ++- man/opal.datasource.Rd | 4 ++- man/opal.datasources.Rd | 4 ++- man/opal.file_mkdir.Rd | 3 +- man/opal.project.Rd | 4 ++- man/opal.projects.Rd | 4 ++- man/opal.symbol_save.Rd | 4 ++- man/opal.table.Rd | 4 ++- man/opal.tables.Rd | 4 ++- man/opal.valueset.Rd | 4 ++- man/opal.variable.Rd | 4 ++- man/opal.variables.Rd | 4 ++- 29 files changed, 124 insertions(+), 62 deletions(-)
Title: Data Analysis using Bootstrap-Coupled Estimation
Description: Data Analysis using Bootstrap-Coupled ESTimation.
Estimation statistics is a simple framework that avoids the pitfalls of
significance testing. It uses familiar statistical concepts: means,
mean differences, and error bars. More importantly, it focuses on the
effect size of one's experiment/intervention, as opposed to a false
dichotomy engendered by P values.
An estimation plot has two key features:
1. It presents all datapoints as a swarmplot, which orders each point to
display the underlying distribution.
2. It presents the effect size as a bootstrap 95% confidence interval on a
separate but aligned axes.
Estimation plots are introduced in Ho et al., Nature Methods 2019, 1548-7105.
<doi:10.1038/s41592-019-0470-3>.
The free-to-view PDF is located at <https://rdcu.be/bHhJ4>.
Author: Joses W. Ho [cre, aut],
Tayfun Tumkaya [aut]
Maintainer: Joses W. Ho <joseshowh@gmail.com>
Diff between dabestr versions 0.2.0 dated 2019-01-07 and 0.2.1 dated 2019-06-26
DESCRIPTION | 12 - MD5 | 21 - NEWS.md |only R/main.R | 12 - R/plot.R | 9 README.md | 30 +- build/vignette.rds |binary inst/doc/bootstrap-confidence-intervals.html | 251 +++++++++++++++++++- inst/doc/robust-statistical-visualization.html | 259 ++++++++++++++++++++- inst/doc/using-dabestr.html | 299 +++++++++++++++++++++---- man/dabest.Rd | 6 man/plot.dabest.Rd | 6 12 files changed, 797 insertions(+), 108 deletions(-)
Title: R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Description: Provides a basic set of R functions for querying the Cancer
Genomics Data Server (CGDS), hosted by the Computational Biology Center at
Memorial-Sloan-Kettering Cancer Center (MSKCC) at <www.cbioportal.org>.
Author: Anders Jacobsen <jacobsen@cbio.mskcc.org>, Augustin Luna <lunaa@cbio.mskcc.org>
Maintainer: Benjamin Gross <cgdsr@cbioportal.org>
Diff between cgdsr versions 1.2.10 dated 2018-01-18 and 1.3.0 dated 2019-06-26
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- NAMESPACE | 3 ++- R/cgdsr.R | 24 ++++++++++++++++++++---- build/vignette.rds |binary inst/doc/cgdsr.R | 41 ++++++++++++++++++++++++++++------------- inst/doc/cgdsr.Rnw | 49 +++++++++++++++++++++++++++++++++++++++---------- inst/doc/cgdsr.pdf |binary man/cgdsr-CGDS.Rd | 3 ++- vignettes/cgdsr.Rnw | 49 +++++++++++++++++++++++++++++++++++++++---------- 10 files changed, 147 insertions(+), 56 deletions(-)
Title: Tools for Trade Practitioners
Description: A collection of tools for trade practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of tariffs and quotas under different competitive regimes. These tools are derived from Anderson et al. (2001) <doi:10.1016/S0047-2727(00)00085-2> and Froeb et al. (2003) <doi:10.1016/S0304-4076(02)00166-5>.
Author: Charles Taragin
Maintainer: Charles Taragin <ctaragin@ftc.gov>
Diff between trade versions 0.5.3 dated 2018-06-10 and 0.5.4 dated 2019-06-26
trade-0.5.3/trade/inst/trade_shiny/app.R |only trade-0.5.3/trade/inst/trade_shiny/tabModule.R |only trade-0.5.3/trade/vignettes/libs |only trade-0.5.4/trade/DESCRIPTION | 20 trade-0.5.4/trade/MD5 | 56 trade-0.5.4/trade/NAMESPACE | 4 trade-0.5.4/trade/R/QuotaClasses.R | 2 trade-0.5.4/trade/R/TariffClasses.R | 56 trade-0.5.4/trade/R/TariffMonComRUM-methods.R |only trade-0.5.4/trade/R/bertrand_quota.R | 2 trade-0.5.4/trade/R/bertrand_tariff.R | 25 trade-0.5.4/trade/R/cournot_tariff.R | 2 trade-0.5.4/trade/R/monopolistic_competition_tariff.R |only trade-0.5.4/trade/build/vignette.rds |binary trade-0.5.4/trade/inst/doc/Reference.Rmd | 1236 +++++++-------- trade-0.5.4/trade/inst/doc/Reference.html | 730 +++++++- trade-0.5.4/trade/inst/trade_shiny/server.R | 2 trade-0.5.4/trade/man/Quota-classes.Rd | 2 trade-0.5.4/trade/man/Tariff-classes.Rd | 3 trade-0.5.4/trade/man/TariffMonComRUM-methods.Rd |only trade-0.5.4/trade/man/bertrand_quota.Rd | 11 trade-0.5.4/trade/man/bertrand_tariff.Rd | 13 trade-0.5.4/trade/man/cournot_tariff.Rd | 13 trade-0.5.4/trade/man/monopolistic_competition_tariff.Rd |only trade-0.5.4/trade/man/summary-methods.Rd | 14 trade-0.5.4/trade/vignettes/Reference.Rmd | 1236 +++++++-------- 26 files changed, 1983 insertions(+), 1444 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods. Methodological details are given in Kastner and Frühwirth-Schnatter (2014) <doi:10.1016/j.csda.2013.01.002>; the most common use cases are described in Kastner (2016) <doi:10.18637/jss.v069.i05>. Also incorporates SV with leverage.
Author: Gregor Kastner [aut] (<https://orcid.org/0000-0002-8237-8271>),
Darjus Hosszejni [aut, cre] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Darjus Hosszejni <darjus.hosszejni@wu.ac.at>
Diff between stochvol versions 2.0.3 dated 2019-05-29 and 2.0.4 dated 2019-06-26
DESCRIPTION | 6 ++--- MD5 | 38 ++++++++++++++++++----------------- NAMESPACE | 3 ++ NEWS | 9 ++++++++ R/generics.R |only R/plotting.R | 26 +++++++++--------------- R/util.R | 11 ++++++++++ R/utilities_svdraws.R | 22 -------------------- R/wrappers.R | 18 +++++++++++++++- R/zzz.R | 2 - inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary man/logret.Rd | 39 ++++++++++++++++++++++-------------- man/paradensplot.Rd | 6 +++-- man/paratraceplot.Rd | 46 +++++++++++-------------------------------- man/paratraceplot.svdraws.Rd |only man/plot.svdraws.Rd | 10 ++++++--- man/plot.svpredict.Rd | 9 ++++++-- man/svsample.Rd | 8 +++++++ man/volplot.Rd | 10 ++++++--- src/theta-utils.cpp | 2 - 21 files changed, 144 insertions(+), 121 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.3.4 dated 2019-06-14 and 1.3.5 dated 2019-06-26
DESCRIPTION | 8 - MD5 | 38 ++--- NEWS.md | 5 R/db_info.R | 75 +++++++---- R/db_ops.R | 101 ++++++++++++--- R/pre_sql.R | 25 --- README.md | 51 +++---- inst/doc/AssigmentPartitioner.html | 4 inst/doc/Parameterized_rquery.html | 6 inst/doc/PipeableSQL.html | 64 +++++++++- inst/doc/QueryGeneration.html | 4 inst/doc/R_mapping.R | 56 +++++--- inst/doc/R_mapping.Rmd | 63 ++++++--- inst/doc/R_mapping.html | 236 ++++++++++++++++++++++++------------- inst/doc/rquery_intro.html | 86 ++++++++++--- inst/doc/rquery_substitution.html | 24 +-- inst/doc/sql_quoting.html | 20 +-- man/rq_connection_tests.Rd | 5 man/rquery_db_info.Rd | 3 vignettes/R_mapping.Rmd | 63 ++++++--- 20 files changed, 625 insertions(+), 312 deletions(-)
Title: Interface to 'JDemetra+' Seasonal Adjustment Software
Description: Interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially
recommended to the members of the European Statistical System (ESS) and the European System of Central Banks.
It offers full access to all options and outputs of 'JDemetra+', including the two leading seasonal adjustment methods
TRAMO/SEATS+ and X-12ARIMA/X-13ARIMA-SEATS.
Author: Alain Quartier-la-Tente [aut, cre],
Anna Michalek [aut],
Jean Palate [aut],
Raf Baeyens [aut]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between RJDemetra versions 0.1.2 dated 2019-04-16 and 0.1.3 dated 2019-06-26
RJDemetra-0.1.2/RJDemetra/NEWS.md |only RJDemetra-0.1.2/RJDemetra/man/deprecated-RJDemetra.Rd |only RJDemetra-0.1.3/RJDemetra/DESCRIPTION | 6 RJDemetra-0.1.3/RJDemetra/MD5 | 44 RJDemetra-0.1.3/RJDemetra/NAMESPACE | 8 RJDemetra-0.1.3/RJDemetra/R/deprecated.R | 697 ---------- RJDemetra-0.1.3/RJDemetra/R/import_workspace.R | 14 RJDemetra-0.1.3/RJDemetra/R/init.R | 5 RJDemetra-0.1.3/RJDemetra/R/jsa2r.R | 2 RJDemetra-0.1.3/RJDemetra/R/onLoad.R | 6 RJDemetra-0.1.3/RJDemetra/R/regarima.R | 2 RJDemetra-0.1.3/RJDemetra/R/spec_rjd.R | 56 RJDemetra-0.1.3/RJDemetra/R/tramoseats.R | 2 RJDemetra-0.1.3/RJDemetra/README.md | 14 RJDemetra-0.1.3/RJDemetra/inst/java/javax.activation-1.2.0.jar |only RJDemetra-0.1.3/RJDemetra/inst/java/jaxb-api-2.3.0.jar |only RJDemetra-0.1.3/RJDemetra/inst/java/jaxb-core-2.3.0.jar |only RJDemetra-0.1.3/RJDemetra/inst/java/jaxb-impl-2.3.0.jar |only RJDemetra-0.1.3/RJDemetra/man/count.Rd | 5 RJDemetra-0.1.3/RJDemetra/man/get_model.Rd | 7 RJDemetra-0.1.3/RJDemetra/man/get_name.Rd | 5 RJDemetra-0.1.3/RJDemetra/man/get_object.Rd | 5 RJDemetra-0.1.3/RJDemetra/man/get_ts.Rd | 5 RJDemetra-0.1.3/RJDemetra/man/jSA.Rd | 2 RJDemetra-0.1.3/RJDemetra/man/regarima.Rd | 2 RJDemetra-0.1.3/RJDemetra/man/tramoseats.Rd | 2 26 files changed, 99 insertions(+), 790 deletions(-)
Title: ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
Description: Tools to download data from the ilostat database
<https://ilostat.ilo.org> together with search and
manipulation utilities.
Author: ILO Department of Statistics [cph, fnd],
David Bescond [aut, cre] (<https://orcid.org/0000-0002-1642-0304>),
Rosina Gammarano [ctb],
Mabelin Villarreal-Fuentes [ctb]
Maintainer: David Bescond <bescond@ilo.org>
Diff between Rilostat versions 1.0.0 dated 2019-05-13 and 1.0.1 dated 2019-06-26
DESCRIPTION | 12 - LICENSE | 2 MD5 | 43 ++--- NEWS.md |only R/clean_ilostat_cache.R | 10 - R/get_ilostat.R | 29 +-- R/get_ilostat_dic.R | 10 - R/get_ilostat_toc.R | 12 - R/ilostat.R | 4 R/sdmx_ilostat.R | 4 R/sysdata.rda |binary R/utils.R | 4 README.md | 12 - build/vignette.rds |binary inst/doc/Rilostat.R | 12 - inst/doc/Rilostat.Rmd | 36 ++-- inst/doc/Rilostat.html | 374 +++++++++++++++++++++++------------------------- man/get_ilostat.Rd | 8 - man/get_ilostat_dic.Rd | 10 - man/get_ilostat_toc.Rd | 12 - man/ilostat.Rd | 4 man/sdmx_ilostat.Rd | 4 vignettes/Rilostat.Rmd | 36 ++-- 23 files changed, 312 insertions(+), 326 deletions(-)
Title: Spectral Transmittance Data for Filters
Description: Spectral 'transmittance' data for frequently used filters and
similar materials. Plastic sheets and films; photography filters;
theatrical gels; machine-vision filters; various types of window glass;
optical glass and some laboratory plastics and glassware. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (Contributed data),
Tania de la Rosa [ctb] (Contributed data),
Riitta Tegelberg [ctb] (Contributed data),
Andreas Albert [ctb] (Contributed data),
SCHOTT AG [ctb] (Contributed data),
Midwest Optical Systems, Inc. (MidOpt) [ctb] (Contributed data)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyFilters versions 0.4.4 dated 2018-01-15 and 0.5.0 dated 2019-06-26
photobiologyFilters-0.4.4/photobiologyFilters/R/lee.data.r |only photobiologyFilters-0.4.4/photobiologyFilters/R/on-load.R |only photobiologyFilters-0.4.4/photobiologyFilters/R/rosco.r |only photobiologyFilters-0.4.4/photobiologyFilters/man/acetate.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/band_pass.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/bpi_visqueen.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/courtaulds.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/etola.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/evonik.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/foiltek.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/lee.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/mcdermit.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/midopt.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/rosco.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/schott.Rd |only photobiologyFilters-0.4.4/photobiologyFilters/man/xl_horticulture.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/DESCRIPTION | 28 photobiologyFilters-0.5.0/photobiologyFilters/MD5 | 92 - photobiologyFilters-0.5.0/photobiologyFilters/NEWS | 20 photobiologyFilters-0.5.0/photobiologyFilters/R/all-accesors.r |only photobiologyFilters-0.5.0/photobiologyFilters/R/bpi-visqueen.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/colors.r | 5 photobiologyFilters-0.5.0/photobiologyFilters/R/courtaulds.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/etola.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/evonik.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/filters-mspct.r | 3 photobiologyFilters-0.5.0/photobiologyFilters/R/foiltek.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/glass-windows.r | 2 photobiologyFilters-0.5.0/photobiologyFilters/R/materials.r | 53 photobiologyFilters-0.5.0/photobiologyFilters/R/mcdermit.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/midopt.r | 11 photobiologyFilters-0.5.0/photobiologyFilters/R/photobiologyFilters.R | 25 photobiologyFilters-0.5.0/photobiologyFilters/R/photography-filters.r |only photobiologyFilters-0.5.0/photobiologyFilters/R/schott.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/R/theatrical-gels.r |only photobiologyFilters-0.5.0/photobiologyFilters/R/types.r | 27 photobiologyFilters-0.5.0/photobiologyFilters/R/uqg.r |only photobiologyFilters-0.5.0/photobiologyFilters/R/xl-horticulture.r | 4 photobiologyFilters-0.5.0/photobiologyFilters/README.md | 243 ++ photobiologyFilters-0.5.0/photobiologyFilters/build/vignette.rds |binary photobiologyFilters-0.5.0/photobiologyFilters/data/filters-mspct.rda |binary photobiologyFilters-0.5.0/photobiologyFilters/inst/CITATION |only photobiologyFilters-0.5.0/photobiologyFilters/inst/doc/user-guide.R | 61 photobiologyFilters-0.5.0/photobiologyFilters/inst/doc/user-guide.Rmd | 99 - photobiologyFilters-0.5.0/photobiologyFilters/inst/doc/user-guide.html | 874 ++++++---- photobiologyFilters-0.5.0/photobiologyFilters/man/acetate_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/all_filter_accessors.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/band_pass_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/bpi_visqueen_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/clear_filters.Rd | 3 photobiologyFilters-0.5.0/photobiologyFilters/man/courtaulds_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/etola_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/evonik_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/filters.mspct.Rd | 3 photobiologyFilters-0.5.0/photobiologyFilters/man/foiltek_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/glass_windows.Rd | 2 photobiologyFilters-0.5.0/photobiologyFilters/man/mcdermit_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/midopt_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/photobiologyFilters-package.Rd | 33 photobiologyFilters-0.5.0/photobiologyFilters/man/photography_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/schott_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/theatrical_gels.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/uqg_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/man/xl_horticulture_filters.Rd |only photobiologyFilters-0.5.0/photobiologyFilters/vignettes/user-guide.Rmd | 99 - 65 files changed, 1149 insertions(+), 566 deletions(-)
More information about photobiologyFilters at CRAN
Permanent link
Title: Estimate Univariate Gaussian or Student's t Mixture
Autoregressive Model
Description: Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR),
Student's t Mixture Autoregressive (StMAR) and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models,
quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>,
Mika Meitz, Daniel Preve, Pentti Saikkonen (2018) <arXiv:1805.04010>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between uGMAR versions 3.0.1 dated 2018-09-22 and 3.1.0 dated 2019-06-26
uGMAR-3.0.1/uGMAR/R/deprecatedFunctions.R |only uGMAR-3.0.1/uGMAR/man/aa_uGMAR.Rd |only uGMAR-3.0.1/uGMAR/man/fitGMAR.Rd |only uGMAR-3.0.1/uGMAR/man/forecastGMAR.Rd |only uGMAR-3.0.1/uGMAR/man/plotGMAR.Rd |only uGMAR-3.0.1/uGMAR/man/simulateGMAR.Rd |only uGMAR-3.1.0/uGMAR/DESCRIPTION | 9 uGMAR-3.1.0/uGMAR/MD5 | 169 uGMAR-3.1.0/uGMAR/NAMESPACE | 13 uGMAR-3.1.0/uGMAR/NEWS.md |only uGMAR-3.1.0/uGMAR/R/GSMARconstructor.R | 517 +- uGMAR-3.1.0/uGMAR/R/MAINest.R | 236 - uGMAR-3.1.0/uGMAR/R/argumentChecks.R | 915 ++-- uGMAR-3.1.0/uGMAR/R/data.R | 35 uGMAR-3.1.0/uGMAR/R/diagnosticPlot.R | 148 uGMAR-3.1.0/uGMAR/R/geneticAlgorithm.R | 2000 +++++----- uGMAR-3.1.0/uGMAR/R/getOmega.R | 3 uGMAR-3.1.0/uGMAR/R/loglikelihood.R | 1039 ++--- uGMAR-3.1.0/uGMAR/R/misc3methods.R | 7 uGMAR-3.1.0/uGMAR/R/numericalDifferentiation.R | 22 uGMAR-3.1.0/uGMAR/R/parameterReforms.R | 482 +- uGMAR-3.1.0/uGMAR/R/pickAndChangeParams.R | 424 +- uGMAR-3.1.0/uGMAR/R/plotMethods.R | 16 uGMAR-3.1.0/uGMAR/R/predictMethod.R | 62 uGMAR-3.1.0/uGMAR/R/printMethods.R | 51 uGMAR-3.1.0/uGMAR/R/quantileResidualTests.R | 49 uGMAR-3.1.0/uGMAR/R/quantileResiduals.R | 81 uGMAR-3.1.0/uGMAR/R/simulateGSMAR.R | 128 uGMAR-3.1.0/uGMAR/R/uGMAR.R | 6 uGMAR-3.1.0/uGMAR/R/uncondMoments.R |only uGMAR-3.1.0/uGMAR/README.md | 60 uGMAR-3.1.0/uGMAR/build/vignette.rds |binary uGMAR-3.1.0/uGMAR/data/IE.rda |only uGMAR-3.1.0/uGMAR/data/logVIX.rda |only uGMAR-3.1.0/uGMAR/inst/doc/intro-to-uGMAR.Rmd | 296 - uGMAR-3.1.0/uGMAR/inst/doc/intro-to-uGMAR.html | 345 + uGMAR-3.1.0/uGMAR/man/GAfit.Rd | 26 uGMAR-3.1.0/uGMAR/man/GSMAR.Rd | 67 uGMAR-3.1.0/uGMAR/man/IE.Rd |only uGMAR-3.1.0/uGMAR/man/VIX.Rd | 2 uGMAR-3.1.0/uGMAR/man/add_data.Rd | 29 uGMAR-3.1.0/uGMAR/man/calc_gradient.Rd | 19 uGMAR-3.1.0/uGMAR/man/changeRegime.Rd | 6 uGMAR-3.1.0/uGMAR/man/change_parametrization.Rd | 10 uGMAR-3.1.0/uGMAR/man/checkConstraintMat.Rd | 2 uGMAR-3.1.0/uGMAR/man/condMoments.Rd |only uGMAR-3.1.0/uGMAR/man/diagnosticPlot.Rd | 57 uGMAR-3.1.0/uGMAR/man/extractRegime.Rd | 4 uGMAR-3.1.0/uGMAR/man/figures |only uGMAR-3.1.0/uGMAR/man/fitGSMAR.Rd | 124 uGMAR-3.1.0/uGMAR/man/getOmega.Rd | 9 uGMAR-3.1.0/uGMAR/man/get_IC.Rd | 2 uGMAR-3.1.0/uGMAR/man/get_ar_roots.Rd | 6 uGMAR-3.1.0/uGMAR/man/get_regime_autocovs.Rd |only uGMAR-3.1.0/uGMAR/man/get_regime_means.Rd | 29 uGMAR-3.1.0/uGMAR/man/get_regime_vars.Rd |only uGMAR-3.1.0/uGMAR/man/isStationary.Rd | 4 uGMAR-3.1.0/uGMAR/man/isStationary_int.Rd | 4 uGMAR-3.1.0/uGMAR/man/iterate_more.Rd | 16 uGMAR-3.1.0/uGMAR/man/logVIX.Rd |only uGMAR-3.1.0/uGMAR/man/loglikelihood.Rd | 41 uGMAR-3.1.0/uGMAR/man/loglikelihood_int.Rd | 36 uGMAR-3.1.0/uGMAR/man/mixingWeights.Rd | 51 uGMAR-3.1.0/uGMAR/man/mixingWeights_int.Rd | 13 uGMAR-3.1.0/uGMAR/man/nParams.Rd | 4 uGMAR-3.1.0/uGMAR/man/pick_pars.Rd | 7 uGMAR-3.1.0/uGMAR/man/plot.gsmarpred.Rd | 10 uGMAR-3.1.0/uGMAR/man/predict.gsmar.Rd | 77 uGMAR-3.1.0/uGMAR/man/print.gsmarpred.Rd | 11 uGMAR-3.1.0/uGMAR/man/print.gsmarsum.Rd | 10 uGMAR-3.1.0/uGMAR/man/quantileResidualPlot.Rd |only uGMAR-3.1.0/uGMAR/man/quantileResidualTests.Rd | 53 uGMAR-3.1.0/uGMAR/man/quantileResiduals.Rd | 47 uGMAR-3.1.0/uGMAR/man/quantileResiduals_int.Rd | 2 uGMAR-3.1.0/uGMAR/man/randomIndividual.Rd | 25 uGMAR-3.1.0/uGMAR/man/randomIndividual_int.Rd | 16 uGMAR-3.1.0/uGMAR/man/random_arcoefs.Rd |only uGMAR-3.1.0/uGMAR/man/random_regime.Rd | 22 uGMAR-3.1.0/uGMAR/man/reformConstrainedPars.Rd | 4 uGMAR-3.1.0/uGMAR/man/regime_distance.Rd | 2 uGMAR-3.1.0/uGMAR/man/removeAllConstraints.Rd | 6 uGMAR-3.1.0/uGMAR/man/simulateGSMAR.Rd | 85 uGMAR-3.1.0/uGMAR/man/standardErrors.Rd | 2 uGMAR-3.1.0/uGMAR/man/stmar_to_gstmar.Rd |only uGMAR-3.1.0/uGMAR/man/stmarpars_to_gstmar.Rd |only uGMAR-3.1.0/uGMAR/man/swap_parametrization.Rd | 27 uGMAR-3.1.0/uGMAR/man/uGMAR.Rd |only uGMAR-3.1.0/uGMAR/man/uncondMoments.Rd |only uGMAR-3.1.0/uGMAR/man/uncondMoments_int.Rd |only uGMAR-3.1.0/uGMAR/man/warn_dfs.Rd |only uGMAR-3.1.0/uGMAR/tests/testthat/test_GAfunctions.R | 1 uGMAR-3.1.0/uGMAR/tests/testthat/test_getOmega.R | 76 uGMAR-3.1.0/uGMAR/tests/testthat/test_loglikelihood.R | 302 - uGMAR-3.1.0/uGMAR/tests/testthat/test_pickAndChangeParams.R | 47 uGMAR-3.1.0/uGMAR/tests/testthat/test_quantileResidualTests.R | 42 uGMAR-3.1.0/uGMAR/tests/testthat/test_simulateGSMAR.R | 55 uGMAR-3.1.0/uGMAR/tests/testthat/test_uncondMoments.R |only uGMAR-3.1.0/uGMAR/vignettes/intro-to-uGMAR.Rmd | 296 - 98 files changed, 4818 insertions(+), 4081 deletions(-)
Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see <https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre],
Kate Lyons [ctb],
John Muschelli [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.9.7 dated 2018-05-06 and 0.9.8 dated 2019-06-26
DESCRIPTION | 9 MD5 | 33 +- NAMESPACE | 3 NEWS.md | 4 R/list_captions.R |only R/list_my_videos.R |only R/upload_caption.R |only R/upload_video.R | 99 ++++++- R/yt_oauth.R | 2 R/yt_search.R | 10 build/vignette.rds |binary inst/doc/tuber-ex.Rmd | 2 inst/doc/tuber-ex.html | 391 ++++++++++++++++++++++------ man/list_captions.Rd |only man/list_my_videos.Rd |only man/upload_caption.Rd |only man/upload_video.Rd | 35 ++ tests/_covrpage.Rmd |only tests/testthat/test-captions.R |only tests/testthat/test-list-channel-sections.R | 14 + tests/testthat/token_file.rds |only vignettes/tuber-ex.Rmd | 2 22 files changed, 487 insertions(+), 117 deletions(-)
Title: Import and Handling for Plain and Formatted Text Files
Description: Functions for importing and handling text files and formatted text
files with additional meta-data, such including '.csv', '.tab', '.json', '.xml',
'.html', '.pdf', '.doc', '.docx', '.rtf', '.xls', '.xlsx', and others.
Author: Kenneth Benoit [aut, cre, cph],
Adam Obeng [aut],
Kohei Watanabe [ctb],
Akitaka Matsuo [ctb],
Paul Nulty [ctb],
Stefan Müller [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between readtext versions 0.74 dated 2019-05-08 and 0.75 dated 2019-06-26
DESCRIPTION | 6 ++--- MD5 | 23 +++++++++++-------- NEWS.md | 4 +++ R/get-functions.R | 48 ++++++++++++++++++++++------------------ R/readtext.R | 37 +++++++++++++++++------------- R/utils.R | 47 ++++++++++++++++++++++++++++++++++++--- inst/doc/readtext_vignette.html | 26 ++++++++++----------- man/add_docid.Rd |only man/readtext.Rd | 19 +++++++++------ man/sort_fields.Rd | 6 ++--- tests/data/csv/withdocid.csv |only tests/data/json/withdocid.json |only tests/data/ods/withdocid.ods |only tests/data/xls/withdocid.xls |only tests/testthat/test-readtext.R | 42 ++++++++++++++++++++++++++++++++--- 15 files changed, 179 insertions(+), 79 deletions(-)
Title: Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Description: Create native charts for 'Microsoft PowerPoint' and 'Microsoft Word' documents.
These can then be edited and annotated. Functions are provided to let users create charts, modify
and format their content. The chart's underlying data is automatically saved within the
'Word' document or 'PowerPoint' presentation. It extends package 'officer' that does
not contain any feature for 'Microsoft' native charts production.
Author: David Gohel [aut, cre],
YouGov [fnd],
David Camposeco [ctb] (chart_data_smooth function)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between mschart versions 0.2.3 dated 2018-04-19 and 0.2.4 dated 2019-06-26
mschart-0.2.3/mschart/inst/ressources |only mschart-0.2.4/mschart/DESCRIPTION | 16 - mschart-0.2.4/mschart/MD5 | 74 ++---- mschart-0.2.4/mschart/NAMESPACE | 3 mschart-0.2.4/mschart/NEWS.md | 14 + mschart-0.2.4/mschart/R/axis_setting.R | 63 ++--- mschart-0.2.4/mschart/R/chart_data_color.R | 33 ++ mschart-0.2.4/mschart/R/helpers.R | 9 mschart-0.2.4/mschart/R/ms_chart.R | 13 - mschart-0.2.4/mschart/R/mschart.R | 16 - mschart-0.2.4/mschart/R/ooml_code.R | 23 + mschart-0.2.4/mschart/R/ph_with_chart.R | 49 +++ mschart-0.2.4/mschart/R/series.R | 3 mschart-0.2.4/mschart/README.md | 8 mschart-0.2.4/mschart/build/vignette.rds |binary mschart-0.2.4/mschart/inst/doc/details.R | 9 mschart-0.2.4/mschart/inst/doc/details.Rmd | 11 mschart-0.2.4/mschart/inst/doc/details.html | 258 +++++++++++---------- mschart-0.2.4/mschart/inst/doc/introduction.R | 2 mschart-0.2.4/mschart/inst/doc/introduction.Rmd | 2 mschart-0.2.4/mschart/inst/doc/introduction.html | 83 ++++-- mschart-0.2.4/mschart/man/as_bar_stack.Rd | 9 mschart-0.2.4/mschart/man/browser_data.Rd | 6 mschart-0.2.4/mschart/man/browser_ts.Rd | 6 mschart-0.2.4/mschart/man/chart_ax_x.Rd | 73 ++--- mschart-0.2.4/mschart/man/chart_data_fill.Rd | 2 mschart-0.2.4/mschart/man/chart_data_labels.Rd | 4 mschart-0.2.4/mschart/man/chart_data_line_width.Rd | 2 mschart-0.2.4/mschart/man/chart_data_size.Rd | 2 mschart-0.2.4/mschart/man/chart_data_smooth.Rd |only mschart-0.2.4/mschart/man/chart_data_stroke.Rd | 2 mschart-0.2.4/mschart/man/chart_data_symbol.Rd | 2 mschart-0.2.4/mschart/man/chart_settings.Rd | 4 mschart-0.2.4/mschart/man/ph_with.ms_chart.Rd |only mschart-0.2.4/mschart/man/ph_with_chart.Rd | 8 mschart-0.2.4/mschart/man/set_theme.Rd | 20 - mschart-0.2.4/mschart/vignettes/details.Rmd | 11 mschart-0.2.4/mschart/vignettes/introduction.Rmd | 2 38 files changed, 526 insertions(+), 316 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.7.9 dated 2018-06-22 and 1.8.1 dated 2019-06-26
DESCRIPTION | 11 ++- MD5 | 139 ++++++++++++++++++++++++++++++----------------- NAMESPACE | 11 +++ NEWS | 13 ++++ R/Brandom.R |only R/Contlcmm.R | 57 +++++++++++++++++-- R/ForInternalUse.R | 4 - R/Jointlcmm.R | 5 + R/Ordlcmm.R | 5 - R/VarExpl.Jointlcmm.R | 6 +- R/VarExpl.hlme.R | 6 +- R/VarExpl.lcmm.R | 6 +- R/VarExpl.multlcmm.R | 6 +- R/cuminc.R | 11 +++ R/dynpred.R | 14 ++-- R/epoce.R | 8 +- R/gridsearch.R | 14 ++-- R/hlme.R | 49 +++++++++++++++- R/lcmm-package.R | 6 +- R/lcmm.R | 3 - R/mpjlcmm.R |only R/multlcmm.R | 67 ++++++++++++++++++++++ R/permut.R |only R/plot.Diffepoce.R | 18 +++--- R/plot.R | 18 +++++- R/plot.cuminc.R | 4 - R/plot.epoce.R | 14 ++-- R/plotfit.R | 13 ++-- R/plotlinkfunction.R | 10 +-- R/plotpostprob.R | 11 ++- R/plotresid.R | 6 +- R/plotsurvival.R | 24 ++++---- R/postprob.mpjlcmm.R |only R/predictL.Jointlcmm.R | 6 +- R/predictL.lcmm.R | 6 +- R/predictY.Jointlcmm.R | 14 ++-- R/predictY.hlme.R | 12 ++-- R/predictY.lcmm.R | 12 ++-- R/predictYcond.R | 4 - R/print.hlme.R | 2 R/print.mpjlcmm.R |only R/summary.mpjlcmm.R |only R/summarytable.R | 17 +++-- R/update.mpjlcmm.R |only R/xclass.R |only THANKS | 5 + build |only inst/CITATION | 17 +++-- inst/doc |only man/ForInternalUse.Rd | 1 man/cuminc.Rd | 12 ++++ man/gridsearch.Rd | 14 ++-- man/hlme.Rd | 2 man/lcmm-package.Rd | 2 man/lcmm.Rd | 3 - man/mpjlcmm.Rd |only man/permut.Rd |only man/plot.Rd | 3 + man/xclass.Rd |only src/Makevars | 3 - src/hetmixCont.f90 | 85 ++++++++++++++--------------- src/hetmixOrd.f90 | 82 ++++++++++++++-------------- src/init.c | 1 src/lcmm.h | 143 +++++++++++++++++++++++++++++++++++-------------- src/mpjhet.f90 |only vignettes |only 66 files changed, 670 insertions(+), 335 deletions(-)
Title: Consistent Significance Controlled Variable Selection in Linear
Regression
Description: Provide consistent significance controlled variable selection procedure with different directions (forward, backward, stepwise) based on diverse criteria (AIC, BIC, adjusted r-square, and p-value). The algorithm selects a final model with only significant variables based on a correction choice of False Discovery Rate, Bonferroni, or no correction.
Author: Jongwook Kim, Adriano Zanin Zambom
Maintainer: Jongwook Kim <jongwook226@gmail.com>
Diff between SignifReg versions 2.0 dated 2019-06-06 and 2.1 dated 2019-06-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SignifReg.R | 29 +++++++++++++++++++++++++++-- build/partial.rdb |binary 4 files changed, 34 insertions(+), 9 deletions(-)
Title: Random Number Generation for Generalized Poisson Distribution
Description: Generation of univariate and multivariate data that follow the generalized Poisson distribution. The details of the univariate part are explained in Demirtas (2017), and the multivariate part is an extension of the correlated Poisson data generation routine that was introduced in Yahav and Shmueli (2012).
Author: Hesen Li, Ruizhe Chen, Hai Nguyen, Yu-che Chung, Ran Gao, Hakan Demirtas
Maintainer: Ruizhe Chen <rchen18@uic.edu>
Diff between RNGforGPD versions 1.0.1 dated 2019-05-31 and 1.0.2 dated 2019-06-26
DESCRIPTION | 8 +-- MD5 | 16 +++--- R/GenMVGPois.R | 3 - R/RNGforGPD-package.R | 4 - inst/doc/RNGfroGPD_vignette.R | 11 ---- inst/doc/RNGfroGPD_vignette.Rmd | 11 ---- inst/doc/RNGfroGPD_vignette.html | 103 +++++++++++++++++++-------------------- man/RNGforGPD-package.Rd | 4 - vignettes/RNGfroGPD_vignette.Rmd | 11 ---- 9 files changed, 73 insertions(+), 98 deletions(-)
Title: Automatic Method Generation from R6
Description: After defining an R6 class, R62S3 is used to automatically generate optional S3/S4 generics and methods for dispatch. Also allows piping for R6 objects.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>)
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between R62S3 versions 1.2.1 dated 2019-05-24 and 1.3.1 dated 2019-06-26
DESCRIPTION | 14 ++++---- MD5 | 22 +++++++++---- NAMESPACE | 2 + NEWS.md | 26 +++++++--------- R/R62Fun.R |only R/R62S3.R | 46 +++++++++++++++++++++------- R/R62S4.R |only R/ifnerror.R |only R/stopwarn.R |only README.md | 69 ++++++++++++++++++++++++++++++------------- man/R62Fun.Rd |only man/R62S3.Rd | 9 ++++- man/R62S4.Rd |only tests/testthat/test-R62Fun.R |only tests/testthat/test-R62S3.R | 47 ++++++++++++++++++++++++----- tests/testthat/test-R62S4.R |only 16 files changed, 166 insertions(+), 69 deletions(-)
Title: Easy Use of 'GADM' Maps
Description: Manipulate, assemble, export <http://www.gadm.org> maps. Create 'choropleth', 'isopleth', dots plot, proportional dots,
dot-density and more.
Author: Jean Pierre Decorps [aut, cre],
Morgane Vallee [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between GADMTools versions 3.6-1 dated 2019-03-17 and 3.7-1 dated 2019-06-26
DESCRIPTION | 13 ++++---- MD5 | 26 ++++++++-------- NAMESPACE | 2 + R/20_gadm_sf_core.R | 5 +-- R/35_dotDensity.R |only README.md | 15 ++++++++- build/vignette.rds |binary inst/doc/GADMTools_GRAPHICS.R | 24 +++++++++++++-- inst/doc/GADMTools_GRAPHICS.Rmd | 40 ++++++++++++++++++++----- inst/doc/GADMTools_GRAPHICS.pdf |binary inst/doc/GADMTools_ISO_3166-1_alpha-3.pdf |binary inst/doc/GADMTools_Manipulating_Shapefiles.pdf |binary man/GADMTools-package.Rd | 4 +- man/gadm_dotDensity.Rd |only vignettes/GADMTools_GRAPHICS.Rmd | 40 ++++++++++++++++++++----- 15 files changed, 126 insertions(+), 43 deletions(-)
Title: Dose Titration Algorithm Tuning
Description: DTAT is a methodologic framework allowing dose individualization to be
conceived as a continuous learning process that begins in early-phase
clinical trials and continues throughout drug development, on into
clinical practice. This package includes code that researchers may use
to reproduce or extend key results of the DTAT research programme, plus
tools for trialists to design and simulate a '3+3/PC' dose-finding study.
Please see Norris (2017) <doi:10.12688/f1000research.10624.3> and
Norris (2017) <doi:10.1101/240846>.
Author: David C. Norris [aut, cre]
Maintainer: David C. Norris <david@precisionmethods.guru>
Diff between DTAT versions 0.3-2 dated 2019-06-04 and 0.3-3 dated 2019-06-26
DESCRIPTION | 10 +++++----- MD5 | 3 ++- inst/doc/widget_D3-viz.html |only 3 files changed, 7 insertions(+), 6 deletions(-)