Title: Tools for Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indices, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [cre, aut],
Ned Horning [aut],
Jakob Schwalb-Willmann [aut],
Robert J. Hijmans [ctb]
Maintainer: Benjamin Leutner <rstoolboxpackage@gmail.com>
Diff between RStoolbox versions 0.2.4 dated 2019-01-08 and 0.2.6 dated 2019-07-23
RStoolbox-0.2.4/RStoolbox/tests/testthat/Rplots.pdf |only RStoolbox-0.2.6/RStoolbox/DESCRIPTION | 12 RStoolbox-0.2.6/RStoolbox/MD5 | 70 ++- RStoolbox-0.2.6/RStoolbox/NEWS | 23 + RStoolbox-0.2.6/RStoolbox/R/RcppExports.R | 4 RStoolbox-0.2.6/RStoolbox/R/coregisterImages.R | 2 RStoolbox-0.2.6/RStoolbox/R/encodeQA.R | 3 RStoolbox-0.2.6/RStoolbox/R/ggR.R | 24 - RStoolbox-0.2.6/RStoolbox/R/pifMatch.R | 3 RStoolbox-0.2.6/RStoolbox/R/rasterPCA.R | 6 RStoolbox-0.2.6/RStoolbox/R/readMeta.R | 83 ++-- RStoolbox-0.2.6/RStoolbox/R/readSLI.R | 31 - RStoolbox-0.2.6/RStoolbox/R/spectralIndices.R | 179 +++++----- RStoolbox-0.2.6/RStoolbox/R/superClass.R | 4 RStoolbox-0.2.6/RStoolbox/R/sysdata.rda |binary RStoolbox-0.2.6/RStoolbox/man/coregisterImages.Rd | 2 RStoolbox-0.2.6/RStoolbox/man/encodeQA.Rd | 3 RStoolbox-0.2.6/RStoolbox/man/ggR.Rd | 23 - RStoolbox-0.2.6/RStoolbox/man/pifMatch.Rd | 3 RStoolbox-0.2.6/RStoolbox/man/rasterPCA.Rd | 5 RStoolbox-0.2.6/RStoolbox/man/spectralIndices.Rd | 25 - RStoolbox-0.2.6/RStoolbox/man/writeSLI.Rd | 4 RStoolbox-0.2.6/RStoolbox/src/RcppExports.cpp | 9 RStoolbox-0.2.6/RStoolbox/src/init.c | 4 RStoolbox-0.2.6/RStoolbox/src/spectralIndices.cpp | 148 +++++--- RStoolbox-0.2.6/RStoolbox/tests/testthat/test-getMeta.R | 1 RStoolbox-0.2.6/RStoolbox/tests/testthat/test-readMeta.R | 5 RStoolbox-0.2.6/RStoolbox/tests/testthat/test-rescaleImage.R | 2 RStoolbox-0.2.6/RStoolbox/tests/testthat/test-sli.R | 48 +- RStoolbox-0.2.6/RStoolbox/tests/testthat/test-spectralIndices.R | 6 RStoolbox-0.2.6/RStoolbox/tests/testthat/test-superClass.R | 4 RStoolbox-0.2.6/RStoolbox/tests/testthat/test-validateMap.R | 2 RStoolbox-0.2.6/RStoolbox/tests/testthat/testdata/metadata/LC08_L1TP_195025_20130707_20170503_01_T1_MTL.txt |only RStoolbox-0.2.6/RStoolbox/tests/testthat/testdata/sli |only 34 files changed, 434 insertions(+), 304 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data
econometrics, as described in Baltagi (2013) Econometric Analysis of Panel Data, ISBN-13:978-1-118-67232-7,
Hsiao (2014) Analysis of Panel Data <doi:10.1017/CBO9781139839327> and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN:978-1-118-94918-4.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 2.0-2 dated 2019-06-21 and 2.1-0 dated 2019-07-23
plm-2.0-2/plm/inst/doc/plm.Rmd |only plm-2.0-2/plm/inst/doc/plm.html |only plm-2.0-2/plm/inst/removed/NEWS |only plm-2.0-2/plm/tests/test_R2_adj_R2.Rout.save |only plm-2.0-2/plm/tests/test_as.data.frame_as.matrix.Rout.save |only plm-2.0-2/plm/tests/test_as.list.pdata.frame.Rout.save |only plm-2.0-2/plm/tests/test_detect_lin_dep_alias.Rout.save |only plm-2.0-2/plm/tests/test_fitted.plm.Rout.save |only plm-2.0-2/plm/tests/test_fixef.Rout.save |only plm-2.0-2/plm/tests/test_fixef_comp_lm_plm.Rout.save |only plm-2.0-2/plm/tests/test_is.pconsecutive.Rout.save |only plm-2.0-2/plm/tests/test_make.pconsecutive_pbalanced.Rout.save |only plm-2.0-2/plm/tests/test_misc.Rout.save |only plm-2.0-2/plm/tests/test_model.frame.Rout.save |only plm-2.0-2/plm/tests/test_model.matrix_effects.Rout.save |only plm-2.0-2/plm/tests/test_model.matrix_pmodel.response.Rout.save |only plm-2.0-2/plm/tests/test_pbgtest.Rout.save |only plm-2.0-2/plm/tests/test_pcdtest.Rout.save |only plm-2.0-2/plm/tests/test_pdata.frame_const_allNA_nonfinite.Rout.save |only plm-2.0-2/plm/tests/test_pdata.frame_extract_class_est_mod.Rout.save |only plm-2.0-2/plm/tests/test_pdata.frame_id_index_more.Rout.save |only plm-2.0-2/plm/tests/test_pdata.frame_print_duplicated_rownames.Rout.save |only plm-2.0-2/plm/tests/test_pdata.frame_unused_levels.Rout.save |only plm-2.0-2/plm/tests/test_pdiff_fd.Rout.save |only plm-2.0-2/plm/tests/test_pdwtest.Rout.save |only plm-2.0-2/plm/tests/test_pggls.Rout.save |only plm-2.0-2/plm/tests/test_plm.data.Rout.save |only plm-2.0-2/plm/tests/test_plm_na.action.Rout.save |only plm-2.0-2/plm/tests/test_preserve_rownames.Rout.save |only plm-2.0-2/plm/tests/test_pseries_subsetting.Rout.save |only plm-2.0-2/plm/tests/test_punbalancedness.Rout.save |only plm-2.0-2/plm/tests/test_pvar.Rout.save |only plm-2.0-2/plm/tests/test_pwfdtest_pwartest.Rout.save |only plm-2.0-2/plm/tests/test_pwtest.Rout.save |only plm-2.0-2/plm/tests/test_residuals_overall_fitted_exp.Rout.save |only plm-2.0-2/plm/tests/test_summary.plm_vcov.Rout.save |only plm-2.0-2/plm/tests/test_summary.pseries_character_logical_factor.Rout.save |only plm-2.0-2/plm/tests/test_vcovG_lin_dep.Rout.save |only plm-2.0-2/plm/vignettes/plm.Rmd |only plm-2.1-0/plm/DESCRIPTION | 8 plm-2.1-0/plm/MD5 | 85 plm-2.1-0/plm/NAMESPACE | 1 plm-2.1-0/plm/NEWS.md | 18 plm-2.1-0/plm/R/est_cce.R | 985 +- plm-2.1-0/plm/R/tool_ranfixef.R | 983 +- plm-2.1-0/plm/R/tool_vcovG.R | 2411 ++--- plm-2.1-0/plm/build/partial.rdb |binary plm-2.1-0/plm/build/vignette.rds |binary plm-2.1-0/plm/inst/doc/plmFunction.Rmd | 788 - plm-2.1-0/plm/inst/doc/plmFunction.html | 21 plm-2.1-0/plm/inst/doc/plmModelComponents.Rmd | 387 plm-2.1-0/plm/inst/doc/plmModelComponents.html | 5 plm-2.1-0/plm/inst/doc/plmPackage.Rmd | 4694 ++++------ plm-2.1-0/plm/inst/doc/plmPackage.html | 6 plm-2.1-0/plm/man/pcce.Rd | 5 plm-2.1-0/plm/man/vcovDC.Rd | 4 plm-2.1-0/plm/man/vcovHC.plm.Rd | 5 plm-2.1-0/plm/tests/Examples/plm-Ex.Rout.save | 249 plm-2.1-0/plm/tests/test_Estimators.R | 2 plm-2.1-0/plm/tests/test_Estimators.Rout.save | 8 plm-2.1-0/plm/vignettes/plmFunction.Rmd | 788 - plm-2.1-0/plm/vignettes/plmModelComponents.Rmd | 387 plm-2.1-0/plm/vignettes/plmPackage.Rmd | 4694 ++++------ 63 files changed, 8186 insertions(+), 8348 deletions(-)
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
Diff between CNVScope versions 1.9.7 dated 2018-10-20 and 2.7.0 dated 2019-07-23
DESCRIPTION | 16 LICENSE | 41 -- MD5 | 116 +++--- NAMESPACE | 4 NEWS.md |only R/CNVScopeserver.R | 165 +++++---- R/GRanges_to_underscored_pos.R | 34 - R/averageMatrixEdges.R | 118 +++--- R/calcCNVKernelProbDist.R | 2 R/calcVecLMs.R | 106 ++--- R/createChromosomalMatrixSet.R | 3 R/downsample_genomic_matrix.R | 1 R/extractNegLogPval.R | 80 ++-- R/formSampleMatrixFromRawGDCData.R | 154 +++++++- R/freadGDCfile.R | 53 ++ R/getAnnotationMatrix.R | 1 R/getAsymmetricBlockIndices.R | 32 + R/getBlockAverageMatrixFromBreakpoints.R | 1 R/getGlobalRescalingStats.R | 76 ++-- R/getInterchromosomalInteractivePlot.R | 1 R/importBreakpointBed.R | 62 +-- R/mathead.R | 34 - R/nbl_result_matrix_sign_small.R | 18 R/postProcessLinRegMatrix.R | 96 ++--- R/rebinGenomicInteractions.R | 1 R/runCNVScopeLocal.R |only R/runCNVScopeShiny.R | 80 ++-- R/signedRescale.R | 192 +++++----- R/underscored_pos_to_GRanges.R | 54 +- R/writeAsymmetricMeltedMatrixToDisk.R | 1 R/writeMeltedChromosomalMatrixToDisk.R | 1 build/vignette.rds |binary inst/doc/additonal_examples.R |only inst/doc/additonal_examples.Rmd |only inst/doc/additonal_examples.html |only inst/doc/create_input_matrix.R | 8 inst/doc/create_input_matrix.Rmd | 16 inst/doc/create_input_matrix.html | 263 ++++++++++++-- inst/doc/create_output_matrix.Rmd | 194 +++++----- inst/doc/create_output_matrix.html | 361 ++++++++++++++++---- inst/doc/power_analysis.R |only inst/doc/power_analysis.Rmd |only inst/doc/power_analysis.html |only inst/extdata/censushg19.rds |only inst/extdata/ensembl_gene_tx_table_prot.rda |binary inst/extdata/sample_breakpoints.bed | 12 inst/extdata/sample_breakpoints_chr1.bed | 12 man/CNVScopeserver.Rd | 2 man/calcVecLMs.Rd | 6 man/createChromosomalMatrixSet.Rd | 3 man/formSampleMatrixFromRawGDCData.Rd | 7 man/freadGDCfile.Rd | 17 man/getAsymmetricBlockIndices.Rd | 9 man/runCNVScopeLocal.Rd |only man/runCNVScopeShiny.Rd | 13 man/underscored_pos_to_GRanges.Rd | 3 man/writeAsymmetricMeltedChromosomalMatrixToDisk.Rd | 1 man/writeMeltedChromosomalMatrixToDisk.Rd | 1 vignettes/additonal_examples.Rmd |only vignettes/aml_sample_matched_input_matrix.rds |only vignettes/blca_sample_matched_input_matrix.rds |only vignettes/chr17_contour_blca.png |only vignettes/chr17_corr_diff_blca.png |only vignettes/chr17_probdist_blca.png |only vignettes/create_input_matrix.Rmd | 16 vignettes/create_output_matrix.Rmd | 194 +++++----- vignettes/power_analysis.Rmd |only vignettes/skcm_sample_matched_input_matrix.rds |only 68 files changed, 1707 insertions(+), 974 deletions(-)
Title: Moran Eigenvector-Based Spatial Regression Models
Description: Functions for estimating Moran's eigenvector-based
spatial regression models.
For details see Murakami (2019) <arXiv:1703.04467>.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.1.6.2 dated 2019-02-25 and 0.1.7 dated 2019-07-23
DESCRIPTION | 12 MD5 | 38 - NAMESPACE | 32 - R/besf.R |only R/besf_vc.R |only R/esf.R | 13 R/plot_qr.R | 5 R/predict0.R | 107 +++- R/predict0_vc.R | 275 ++++++----- R/resf.R | 346 +++++++++----- R/resf_qr.R | 425 +++++++++-------- R/resf_vc.R | 1167 +++++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/vignettes.pdf |binary man/besf.Rd |only man/besf_vc.Rd |only man/esf.Rd | 4 man/predict0.Rd | 9 man/predict0_vc.Rd | 140 ++--- man/resf.Rd | 24 - man/resf_qr.Rd | 29 - man/resf_vc.Rd | 163 +++--- 22 files changed, 1595 insertions(+), 1194 deletions(-)
Title: Mediation Analysis for Complex Surveys
Description: It is a computer tool to conduct mediation analysis for complex surveys using multi-stage sampling. Specifically, the mediation analysis method using balanced repeated replications was proposed by Mai, Ha, and Soulakova (2019) <DOI:10.1080/10705511.2018.1559065>. The development of 'MedSurvey' was sponsored by American Lebanese Syrian Associated Charities (ALSAC). However, the contents of MedSurvey do not necessarily represent the policy of the ALSAC.
Author: Yujiao Mai [aut],
Jiahui Xu [aut],
Deo Kumar Srivastava [aut],
Hui Zhang [aut,cre]
Maintainer: Hui Zhang <hzhang@northwestern.edu>
Diff between MedSurvey versions 1.1.1.0 dated 2019-04-24 and 1.1.1.1.0 dated 2019-07-23
DESCRIPTION | 12 +++++++----- MD5 | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-)
Title: Computational Methods for Numerical Analysis
Description: Provides the source and examples for James P. Howard, II,
"Computational Methods for Numerical Analysis with R,"
<http://howardjp.github.io/cmna/>, a book on numerical
methods in R.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>)
Maintainer: James Howard <jh@jameshoward.us>
Diff between cmna versions 1.0.0 dated 2017-06-13 and 1.0.2 dated 2019-07-23
DESCRIPTION | 26 ++++++------ MD5 | 100 ++++++++++++++++++++++++------------------------ R/iterativematrix.R | 6 +- README.md | 17 +++----- inst/CITATION | 2 inst/COPYRIGHTS | 2 man/adaptint.Rd | 3 + man/bezier.Rd | 1 man/bilinear.Rd | 2 man/bisection.Rd | 1 man/choleskymatrix.Rd | 1 man/cmna-package.Rd | 3 - man/cubicspline.Rd | 2 man/detmatrix.Rd | 1 man/division.Rd | 1 man/fibonacci.Rd | 1 man/findiff.Rd | 1 man/gaussint.Rd | 1 man/gdls.Rd | 1 man/giniquintile.Rd | 2 man/goldsect.Rd | 1 man/gradient.Rd | 1 man/hillclimbing.Rd | 1 man/horner.Rd | 1 man/invmatrix.Rd | 1 man/isPrime.Rd | 1 man/iterativematrix.Rd | 1 man/linterp.Rd | 2 man/lumatrix.Rd | 1 man/mcint.Rd | 1 man/midpt.Rd | 2 man/newton.Rd | 1 man/nn.Rd | 1 man/nthroot.Rd | 1 man/polyinterp.Rd | 2 man/pwiselinterp.Rd | 2 man/quadratic.Rd | 1 man/refmatrix.Rd | 1 man/resizeImage.Rd | 1 man/revolution-solid.Rd | 1 man/romberg.Rd | 2 man/rowops.Rd | 1 man/sa.Rd | 1 man/secant.Rd | 1 man/simp.Rd | 2 man/simp38.Rd | 2 man/summation.Rd | 1 man/trap.Rd | 2 man/tridiagmatrix.Rd | 1 man/vecnorm.Rd | 1 man/wilkinson.Rd | 1 51 files changed, 135 insertions(+), 78 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.1.9 dated 2019-05-27 and 0.2.3 dated 2019-07-23
DESCRIPTION | 8 +- MD5 | 18 ++--- R/get_eurostat_bulk.R | 10 +-- R/get_eurostat_data.R | 18 +++-- R/get_eurostat_raw.R | 142 ++++++++++++++++++++++++++++++++++----------- R/search_eurostat_dsd.R | 2 man/get_eurostat_data.Rd | 6 + man/get_eurostat_raw.Rd | 7 +- man/search_eurostat_dsd.Rd | 2 tests/testthat/test-all.R | 43 ++++++++----- 10 files changed, 175 insertions(+), 81 deletions(-)
Title: Stan Models for the Pairwise Comparison Factor Model
Description: Provides convenience functions and pre-programmed Stan models
related to the paired comparison factor model. Its purpose is to make fitting
paired comparison data using Stan easy.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>),
Daniel C. Furr [ctb],
Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between pcFactorStan versions 0.11 dated 2019-06-11 and 1.0.1 dated 2019-07-23
pcFactorStan-0.11/pcFactorStan/inst/doc/brief-manual.R |only pcFactorStan-0.11/pcFactorStan/inst/doc/brief-manual.Rmd |only pcFactorStan-0.11/pcFactorStan/inst/doc/brief-manual.html |only pcFactorStan-0.11/pcFactorStan/src/stan_files/covariance.stan |only pcFactorStan-0.11/pcFactorStan/src/stan_files/covariance_ll.stan |only pcFactorStan-0.11/pcFactorStan/src/stan_files/functions/cmp_prob.stan |only pcFactorStan-0.11/pcFactorStan/vignettes/brief-manual.Rmd |only pcFactorStan-1.0.1/pcFactorStan/DESCRIPTION | 12 pcFactorStan-1.0.1/pcFactorStan/MD5 | 91 +- pcFactorStan-1.0.1/pcFactorStan/NAMESPACE | 15 pcFactorStan-1.0.1/pcFactorStan/NEWS |only pcFactorStan-1.0.1/pcFactorStan/R/apps.R | 41 + pcFactorStan-1.0.1/pcFactorStan/R/fit.R | 327 +++++++++- pcFactorStan-1.0.1/pcFactorStan/R/generate.R | 98 +- pcFactorStan-1.0.1/pcFactorStan/R/package.R | 2 pcFactorStan-1.0.1/pcFactorStan/README.md | 4 pcFactorStan-1.0.1/pcFactorStan/build/vignette.rds |binary pcFactorStan-1.0.1/pcFactorStan/inst/doc/manual.R |only pcFactorStan-1.0.1/pcFactorStan/inst/doc/manual.Rmd |only pcFactorStan-1.0.1/pcFactorStan/inst/doc/manual.html |only pcFactorStan-1.0.1/pcFactorStan/inst/itemModelExplorer/global.R |only pcFactorStan-1.0.1/pcFactorStan/inst/itemModelExplorer/server.R | 39 - pcFactorStan-1.0.1/pcFactorStan/inst/itemModelExplorer/ui.R | 8 pcFactorStan-1.0.1/pcFactorStan/man/calibrateItems.Rd | 5 pcFactorStan-1.0.1/pcFactorStan/man/findModel.Rd | 10 pcFactorStan-1.0.1/pcFactorStan/man/generateCovItems.Rd | 50 - pcFactorStan-1.0.1/pcFactorStan/man/generateFactorItems.Rd | 50 - pcFactorStan-1.0.1/pcFactorStan/man/generateItem.Rd | 49 - pcFactorStan-1.0.1/pcFactorStan/man/itemModelExplorer.Rd | 57 + pcFactorStan-1.0.1/pcFactorStan/man/outlierTable.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/parDistributionCustom.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/parInterval.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/pcFactorStan-package.Rd | 2 pcFactorStan-1.0.1/pcFactorStan/man/pcStan.Rd | 9 pcFactorStan-1.0.1/pcFactorStan/man/phyActFlowPropensity.Rd | 7 pcFactorStan-1.0.1/pcFactorStan/man/responseCurve.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/toLoo.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/twoLevelGraph.Rd | 3 pcFactorStan-1.0.1/pcFactorStan/man/unfactor.Rd |only pcFactorStan-1.0.1/pcFactorStan/man/withoutIndex.Rd |only pcFactorStan-1.0.1/pcFactorStan/src/stan_files/correlation.stan |only pcFactorStan-1.0.1/pcFactorStan/src/stan_files/correlation_ll.stan |only pcFactorStan-1.0.1/pcFactorStan/src/stan_files/factor.stan | 26 pcFactorStan-1.0.1/pcFactorStan/src/stan_files/factor_ll.stan | 28 pcFactorStan-1.0.1/pcFactorStan/src/stan_files/functions/cmp_prob1.stan |only pcFactorStan-1.0.1/pcFactorStan/src/stan_files/functions/cmp_prob2.stan |only pcFactorStan-1.0.1/pcFactorStan/src/stan_files/unidim.stan | 10 pcFactorStan-1.0.1/pcFactorStan/src/stan_files/unidim_adapt.stan | 5 pcFactorStan-1.0.1/pcFactorStan/src/stan_files/unidim_ll.stan | 12 pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-1graph.R | 9 pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-2generate.R | 14 pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-3data.R | 2 pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-4likelihood.R | 73 +- pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-5loo.R |only pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-6explorer.R |only pcFactorStan-1.0.1/pcFactorStan/tests/testthat/test-7report.R |only pcFactorStan-1.0.1/pcFactorStan/tools/build | 1 pcFactorStan-1.0.1/pcFactorStan/tools/genStan | 91 +- pcFactorStan-1.0.1/pcFactorStan/tools/vignetter | 3 pcFactorStan-1.0.1/pcFactorStan/vignettes/manual.Rmd |only 60 files changed, 858 insertions(+), 295 deletions(-)
Title: Enhanced Reading and Writing for 'SQLite' Databases
Description: Reads and writes data frames to 'SQLite' databases while
preserving time zones (for POSIXct columns),
projections (for 'sfc' columns), units (for 'units' columns),
levels (for factors and ordered factors) and classes for
logical, Date and 'hms' columns.
It also logs changes to tables and provides more informative error messages.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between readwritesqlite versions 0.0.1 dated 2019-07-11 and 0.0.2 dated 2019-07-23
DESCRIPTION | 9 +++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 4 ++-- NEWS.md | 9 ++++++++- R/meta.R | 4 ++-- R/namespace.R | 2 +- README.md | 1 + inst/doc/using-readwritesqlite.html | 10 +++++++--- tests/testthat/test-db.R | 4 ++-- tests/testthat/test-dependencies.R | 9 +++------ tests/testthat/test-meta.R | 10 +++++----- tests/testthat/test-query.R | 2 +- 12 files changed, 48 insertions(+), 38 deletions(-)
More information about readwritesqlite at CRAN
Permanent link
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine
learning life cycle, see <https://mlflow.org/>. This package supports installing
'MLflow', tracking experiments, creating and running projects, and saving and
serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.0.0 dated 2019-06-06 and 1.1.0 dated 2019-07-23
DESCRIPTION | 8 ++-- MD5 | 25 +++++++------- NAMESPACE | 1 R/databricks-utils.R | 3 + R/tracking-client.R | 31 +++++++++++++----- R/tracking-rest.R | 4 -- R/tracking-runs.R | 56 ++++++++++++++++++++++++++++++--- R/tracking-utils.R | 14 +++++++- README.md | 4 +- man/mlflow_delete_tag.Rd |only man/mlflow_search_runs.Rd | 5 ++ tests/testthat/test-client.R | 50 ++++++++++++++++++++++++++++- tests/testthat/test-databricks-utils.R | 3 - tests/testthat/test-tracking-runs.R | 47 +++++++++++++++++++++------ 14 files changed, 201 insertions(+), 50 deletions(-)
Title: Bayesian Nonparametric Mixture Models
Description: Functions to perform Bayesian nonparametric univariate and multivariate density estimation and clustering, by means of Pitman-Yor mixtures, and Dependent Dirichlet process mixtures for partially exchangeable data.
Author: Riccardo Corradin [aut, cre], Antonio Canale [ctb], Bernardo Nipoti [ctb]
Maintainer: Riccardo Corradin <riccardo.corradin@gmail.com>
Diff between BNPmix versions 0.1.2 dated 2019-05-18 and 0.2.2 dated 2019-07-23
BNPmix-0.1.2/BNPmix/R/condDDP.R |only BNPmix-0.1.2/BNPmix/R/condMCMC.R |only BNPmix-0.1.2/BNPmix/R/condMCMCmv.R |only BNPmix-0.1.2/BNPmix/man/condDDP.Rd |only BNPmix-0.1.2/BNPmix/man/condMCMC.Rd |only BNPmix-0.1.2/BNPmix/man/condMCMCmv.Rd |only BNPmix-0.1.2/BNPmix/man/modCond.Rd |only BNPmix-0.1.2/BNPmix/src/distributions.cpp |only BNPmix-0.2.2/BNPmix/DESCRIPTION | 14 BNPmix-0.2.2/BNPmix/MD5 | 102 + BNPmix-0.2.2/BNPmix/NAMESPACE | 10 BNPmix-0.2.2/BNPmix/R/CPP.R |only BNPmix-0.2.2/BNPmix/R/DDPdensity.R |only BNPmix-0.2.2/BNPmix/R/PYdensity.R |only BNPmix-0.2.2/BNPmix/R/PYregression.R |only BNPmix-0.2.2/BNPmix/R/RcppExports.R | 1031 +++++++++++------ BNPmix-0.2.2/BNPmix/R/class_generic.R | 394 ++++-- BNPmix-0.2.2/BNPmix/R/utilities.R |only BNPmix-0.2.2/BNPmix/data |only BNPmix-0.2.2/BNPmix/man/BNPdens.Rd |only BNPmix-0.2.2/BNPmix/man/BNPmix-package.Rd | 22 BNPmix-0.2.2/BNPmix/man/BNPmix_BIN.Rd |only BNPmix-0.2.2/BNPmix/man/BNPmix_VI_LB.Rd |only BNPmix-0.2.2/BNPmix/man/BNPmix_psm.Rd |only BNPmix-0.2.2/BNPmix/man/BNPpart.Rd |only BNPmix-0.2.2/BNPmix/man/CPP.Rd |only BNPmix-0.2.2/BNPmix/man/DDPdensity.Rd |only BNPmix-0.2.2/BNPmix/man/MAR.Rd | 111 - BNPmix-0.2.2/BNPmix/man/MAR_L.Rd |only BNPmix-0.2.2/BNPmix/man/MAR_mv.Rd | 117 - BNPmix-0.2.2/BNPmix/man/MAR_mv_L.Rd |only BNPmix-0.2.2/BNPmix/man/MAR_mv_MKR.Rd |only BNPmix-0.2.2/BNPmix/man/MAR_mv_P.Rd |only BNPmix-0.2.2/BNPmix/man/PYcalibrate.Rd |only BNPmix-0.2.2/BNPmix/man/PYdensity.Rd |only BNPmix-0.2.2/BNPmix/man/PYregression.Rd |only BNPmix-0.2.2/BNPmix/man/cDDP.Rd | 117 - BNPmix-0.2.2/BNPmix/man/cICS.Rd | 111 - BNPmix-0.2.2/BNPmix/man/cICS_L.Rd |only BNPmix-0.2.2/BNPmix/man/cICS_mv.Rd | 124 -- BNPmix-0.2.2/BNPmix/man/cICS_mv_L.Rd |only BNPmix-0.2.2/BNPmix/man/cICS_mv_MKR.Rd |only BNPmix-0.2.2/BNPmix/man/cICS_mv_P.Rd |only BNPmix-0.2.2/BNPmix/man/cSLI.Rd | 107 - BNPmix-0.2.2/BNPmix/man/cSLI_L.Rd |only BNPmix-0.2.2/BNPmix/man/cSLI_mv.Rd | 117 - BNPmix-0.2.2/BNPmix/man/cSLI_mv_L.Rd |only BNPmix-0.2.2/BNPmix/man/cSLI_mv_MKR.Rd |only BNPmix-0.2.2/BNPmix/man/cSLI_mv_P.Rd |only BNPmix-0.2.2/BNPmix/man/clean_partition.Rd |only BNPmix-0.2.2/BNPmix/man/partition.Rd |only BNPmix-0.2.2/BNPmix/man/plot.Rd | 128 +- BNPmix-0.2.2/BNPmix/man/summary.Rd | 50 BNPmix-0.2.2/BNPmix/src/BNPmix_init.c | 66 - BNPmix-0.2.2/BNPmix/src/CommonUtilities.cpp | 181 ++- BNPmix-0.2.2/BNPmix/src/CommonUtilities.h | 25 BNPmix-0.2.2/BNPmix/src/DdpFunctions.cpp | 309 +++-- BNPmix-0.2.2/BNPmix/src/DdpFunctions.h | 12 BNPmix-0.2.2/BNPmix/src/Distributions.cpp |only BNPmix-0.2.2/BNPmix/src/Distributions.h | 7 BNPmix-0.2.2/BNPmix/src/IcsFunctions.cpp | 1451 +++++++++++++++++++++--- BNPmix-0.2.2/BNPmix/src/IcsFunctions.h | 287 ++++ BNPmix-0.2.2/BNPmix/src/MAR.cpp | 983 ++++++++++++++-- BNPmix-0.2.2/BNPmix/src/MarFunctions.cpp | 1399 +++++++++++++++++++++-- BNPmix-0.2.2/BNPmix/src/MarFunctions.h | 250 +++- BNPmix-0.2.2/BNPmix/src/RcppExports.cpp | 513 ++++++++ BNPmix-0.2.2/BNPmix/src/SliFunctions.cpp | 1675 +++++++++++++++++++++++----- BNPmix-0.2.2/BNPmix/src/SliFunctions.h | 331 ++++- BNPmix-0.2.2/BNPmix/src/cDDP.cpp | 66 - BNPmix-0.2.2/BNPmix/src/cICS.cpp | 1140 +++++++++++++++++-- BNPmix-0.2.2/BNPmix/src/cSLI.cpp | 1078 ++++++++++++++++-- BNPmix-0.2.2/BNPmix/src/est_partition.cpp |only 72 files changed, 10159 insertions(+), 2169 deletions(-)
Title: Parallel Use of Statistical Packages in Teaching
Description: When teaching statistics, it can often be desirable to
uncouple the content from specific software packages. To ease such
efforts, the Rosetta Stats website (<https://rosettastats.com>) allows
comparing analyses in different packages. This package is the companion
to the Rosetta Stats website, aiming to provide functions that produce
output that is similar to output from other statistical packages, thereby
facilitating 'software-agnostic' teaching of statistics.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Ron Pat-El [ctb] (<https://orcid.org/0000-0002-4742-0163>),
Peter Verboon [ctb] (<https://orcid.org/0000-0001-8656-0890>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between rosetta versions 0.0.1 dated 2019-02-08 and 0.1.0 dated 2019-07-23
DESCRIPTION | 36 ++++++++++++++++++++---------------- MD5 | 35 ++++++++++++++++++++++++----------- NAMESPACE | 12 ++++++++++++ R/dlvPlot.R |only R/fanova.R | 12 ++++++------ R/getData.R | 2 +- R/ggBoxplot.R |only R/imported_operators.R |only R/logRegr.R |only R/meanDiff.R |only R/meanDiff.multi.R |only R/oneway.R | 6 +++--- R/posthocTGH.R | 2 +- R/regr.R |only man/crossTab.Rd | 4 ++-- man/dlvPlot.Rd |only man/fanova.Rd | 2 +- man/frequencies.Rd | 10 +++++----- man/ggBoxplot.Rd |only man/logRegr.Rd |only man/meanDiff.Rd |only man/meanDiff.multi.Rd |only man/oneway.Rd | 6 +++--- man/posthocTGH.Rd | 6 +++--- man/regr.Rd |only 25 files changed, 81 insertions(+), 52 deletions(-)
Title: Conditionally Unbiased Bounded Influence Estimates
Description: Conditionally unbiased bounded influence estimates as described in
Kuensch et al. (1989) <doi:10.1080/01621459.1989.10478791> in three special cases of
the generalized linear model: Bernoulli, Binomial, and Poisson distributed responses.
Author: Alfio Marazzi <Alfio.Marazzi@unisante.ch>
Maintainer: A. Randriamiharisoa <exelami@gmail.com>
Diff between robcbi versions 1.1-2 dated 2018-06-22 and 1.1-3 dated 2019-07-23
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- R/cubinfAM.R | 12 +++++++----- 3 files changed, 15 insertions(+), 13 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.1.0 dated 2019-07-10 and 0.1.1 dated 2019-07-23
mlr3misc-0.1.0/mlr3misc/R/ref_cbind.R |only mlr3misc-0.1.0/mlr3misc/tests/testthat/test_ref_cbind.R |only mlr3misc-0.1.1/mlr3misc/DESCRIPTION | 8 +- mlr3misc-0.1.1/mlr3misc/MD5 | 36 +++++++----- mlr3misc-0.1.1/mlr3misc/NAMESPACE | 1 mlr3misc-0.1.1/mlr3misc/NEWS.md | 7 ++ mlr3misc-0.1.1/mlr3misc/R/encapsulate.R |only mlr3misc-0.1.1/mlr3misc/R/invoke.R | 20 ++++++ mlr3misc-0.1.1/mlr3misc/R/rcbind.R |only mlr3misc-0.1.1/mlr3misc/R/topo_sort.R | 2 mlr3misc-0.1.1/mlr3misc/inst |only mlr3misc-0.1.1/mlr3misc/man/encapsulate.Rd |only mlr3misc-0.1.1/mlr3misc/man/invoke.Rd | 10 +++ mlr3misc-0.1.1/mlr3misc/man/rcbind.Rd | 2 mlr3misc-0.1.1/mlr3misc/tests/testthat/setup.R |only mlr3misc-0.1.1/mlr3misc/tests/testthat/teardown.R |only mlr3misc-0.1.1/mlr3misc/tests/testthat/test_Dictionary.R | 2 mlr3misc-0.1.1/mlr3misc/tests/testthat/test_encapsulate.R |only mlr3misc-0.1.1/mlr3misc/tests/testthat/test_insert.R | 12 ++-- mlr3misc-0.1.1/mlr3misc/tests/testthat/test_invoke.R | 7 ++ mlr3misc-0.1.1/mlr3misc/tests/testthat/test_map.R | 22 +++---- mlr3misc-0.1.1/mlr3misc/tests/testthat/test_rcbind.R |only mlr3misc-0.1.1/mlr3misc/tests/testthat/test_rowwise_table.R | 2 mlr3misc-0.1.1/mlr3misc/tests/testthat/test_unnest.R | 10 +-- 24 files changed, 93 insertions(+), 48 deletions(-)
Title: Fast Drawing and Shading of Graphs of Statistical Distributions
Description: Provides functionality to produce graphs of probability density functions and cumulative distribution functions with few keystrokes, allows shading under the curve of the probability density function to illustrate concepts such as p-values and critical values, and fits a simple linear regression line on a scatter plot with the equation as the main title.
Author: Steven T. Garren
Maintainer: Steven T. Garren <garrenst@jmu.edu>
Diff between fastGraph versions 2.0 dated 2019-07-09 and 2.1 dated 2019-07-23
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/fastGraph.R | 32 ++++++++++++++------------------ man/fastGraph-package.Rd | 20 +++++++++----------- man/plotDist.Rd | 15 +++++++-------- man/plotLine.Rd | 14 +++++++++----- man/shadeDist.Rd | 20 +++++++++++++------- man/shadePhat.Rd | 19 ++++++++++++------- 9 files changed, 77 insertions(+), 69 deletions(-)
Title: Meta-Analysis of Gene Expression Data
Description: A pipeline for the meta-analysis of gene expression data. We have
assembled several analysis and plot functions to
perform integrated multi-cohort analysis of gene expression data (meta-
analysis). Methodology described in:
<http://biorxiv.org/content/early/2016/08/25/071514>.
Author: Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney,
Erika Bongen, Aditya M. Rao, Purvesh Khatri
Maintainer: Aditya M. Rao <adityamr@stanford.edu>
Diff between MetaIntegrator versions 2.1.0 dated 2019-07-23 and 2.1.1 dated 2019-07-23
DESCRIPTION | 24 ++++++++++++------------ MD5 | 14 +++++++------- NEWS | 4 +++- R/getGEOData.R | 2 +- R/manhattanPlot.R | 3 +++ R/predvalPlot.R | 2 ++ inst/doc/MetaIntegrator.html | 16 ++++++++-------- inst/doc/MetaIntegratorRealExample.html | 4 ++-- 8 files changed, 38 insertions(+), 31 deletions(-)
More information about MetaIntegrator at CRAN
Permanent link
More information about CorrectOverloadedPeaks at CRAN
Permanent link
Title: Relationship Matrices for Diploid and Autopolyploid Species
Description: Computation of A (pedigree), G (genomic-base), and H (A corrected
by G) relationship matrices for diploid and autopolyploid species. Several methods
are implemented considering additive and non-additive models.
Author: Rodrigo Amadeu [aut, cre],
Catherine Cellon [ctb],
Leticia Lara [ctb],
Marcio Resende [ctb],
Ivone Oliveira [ctb],
Luis Ferrao [ctb],
Patricio Munoz [ctb],
Augusto Garcia [ctb]
Maintainer: Rodrigo Amadeu <rramadeu@ufl.edu>
Diff between AGHmatrix versions 1.0.0 dated 2019-07-12 and 1.0.1 dated 2019-07-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Hmatrix.R | 6 +++--- inst/doc/Tutorial_AGHmatrix.pdf |binary man/Hmatrix.Rd | 4 ++-- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Probabilistic and Possibilistic Cluster Analysis
Description: Partitioning clustering divides the objects in a data set into non-overlapping subsets or clusters by using the prototype-based probabilistic and possibilistic clustering algorithms. This package covers a set of the functions for Fuzzy C-Means (Bezdek, 1974) <doi:10.1080/01969727308546047>, Possibilistic C-Means (Krishnapuram & Keller, 1993) <doi:10.1109/91.227387>, Possibilistic Fuzzy C-Means (Pal et al, 2005) <doi:10.1109/TFUZZ.2004.840099>, Possibilistic Clustering Algorithm (Yang et al, 2006) <doi:10.1016/j.patcog.2005.07.005>, Possibilistic C-Means with Repulsion (Wachs et al, 2006) <doi:10.1007/3-540-31662-0_6> and the other variants of hard and soft clustering algorithms. The cluster prototypes and membership matrices required by these partitioning algorithms are initialized with different initialization techniques that are available in the package 'inaparc'. As the distance metrics, not only the Euclidean distance but also a set of the commonly used distance metrics are available to use with some of the algorithms in the package.
Author: Zeynel Cebeci [aut, cre],
Figen Yildiz [aut],
Alper Tuna Kavlak [aut],
Cagatay Cebeci [aut],
Hasan Onder [aut]
Maintainer: Zeynel Cebeci <zcebeci@cukurova.edu.tr>
Diff between ppclust versions 0.1.2 dated 2019-01-19 and 0.1.3 dated 2019-07-23
ppclust-0.1.2/ppclust/inst/doc/pcm.pdf |only ppclust-0.1.3/ppclust/DESCRIPTION | 8 ppclust-0.1.3/ppclust/MD5 | 26 ppclust-0.1.3/ppclust/R/fcm.R | 4 ppclust-0.1.3/ppclust/build/vignette.rds |binary ppclust-0.1.3/ppclust/inst/NEWS.Rd | 6 ppclust-0.1.3/ppclust/inst/doc/fcm.Rmd | 10 ppclust-0.1.3/ppclust/inst/doc/fcm.html | 3189 ++++++++++++++++++++++++++++--- ppclust-0.1.3/ppclust/inst/doc/pcm.Rmd | 19 ppclust-0.1.3/ppclust/inst/doc/pcm.html |only ppclust-0.1.3/ppclust/inst/doc/upfc.Rmd | 4 ppclust-0.1.3/ppclust/inst/doc/upfc.html | 3169 ++++++++++++++++++++++++++++-- ppclust-0.1.3/ppclust/vignettes/fcm.Rmd | 10 ppclust-0.1.3/ppclust/vignettes/pcm.Rmd | 19 ppclust-0.1.3/ppclust/vignettes/upfc.Rmd | 4 15 files changed, 5922 insertions(+), 546 deletions(-)
Title: Predictive Approaches in Psychology
Description: Recent years have seen an increased interest in novel methods
for analyzing quantitative data from experimental psychology. Currently, however, they lack an
established and accessible software framework. Many existing implementations provide no guidelines,
consisting of small code snippets, or sets of packages. In addition, the use of existing packages
often requires advanced programming experience. 'PredPsych' is a user-friendly toolbox based on
machine learning predictive algorithms. It comprises of multiple functionalities for multivariate
analyses of quantitative behavioral data based on machine learning models.
Author: Atesh Koul
Maintainer: Atesh Koul <atesh.koul@gmail.com>
Diff between PredPsych versions 0.3 dated 2017-09-12 and 0.4 dated 2019-07-23
DESCRIPTION | 12 ++-- MD5 | 44 +++++++------- R/ClassPerm.R | 63 ++++++++++++++++++--- R/DTModel.R | 123 ++++++++++++++++++++++++++++++++--------- R/DimReduction.R | 2 R/LinearDA.R | 39 +++++++++++-- R/ModelCluster.R | 4 - R/PredPsych-package.r | 2 R/classifyFun.R | 43 ++++++++++---- R/fscores.R | 15 ++++- R/overallConfusionMetrics.R | 2 R/predictNewData.R | 2 man/ClassPerm.Rd | 17 +++-- man/DTModel.Rd | 13 ++-- man/DimensionRed.Rd | 9 +-- man/KinData.Rd | 1 man/LinearDA.Rd | 20 +++--- man/ModelCluster.Rd | 9 +-- man/PredPsych.Rd | 9 +-- man/classifyFun.Rd | 23 +++---- man/fscore.Rd | 9 +-- man/overallConfusionMetrics.Rd | 9 +-- man/predictNewData.Rd | 3 - 23 files changed, 319 insertions(+), 154 deletions(-)
Title: Text Mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (text and XML) from <http://www.ncbi.nlm.nih.gov/pubmed>.
Author: Jyoti Rani, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran <ramuigib@gmail.com>
Diff between pubmed.mineR versions 1.0.15 dated 2019-05-06 and 1.0.16 dated 2019-07-23
DESCRIPTION | 9 +++++---- MD5 | 14 ++++++++------ NAMESPACE | 2 ++ R/get_DOIs.R |only data/GeneToEntrez.rda |binary data/HGNC2UniprotID.rda |binary data/HGNCdata.rda |binary data/common_words_new.rda |binary man/get_DOIs.Rd |only 9 files changed, 15 insertions(+), 10 deletions(-)
Title: Meta-Analysis of Gene Expression Data
Description: A pipeline for the meta-analysis of gene expression data. We have
assembled several analysis and plot functions to
perform integrated multi-cohort analysis of gene expression data (meta-
analysis). Methodology described in:
<http://biorxiv.org/content/early/2016/08/25/071514>.
Author: Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney,
Erika Bongen, Aditya M. Rao, Purvesh Khatri
Maintainer: Aditya M. Rao <adityamr@stanford.edu>
Diff between MetaIntegrator versions 2.0.0 dated 2018-10-05 and 2.1.0 dated 2019-07-23
DESCRIPTION | 14 MD5 | 78 ++- NAMESPACE | 3 NEWS | 10 R/checkDataObject_functions.R | 2 R/forestPlot.R | 10 R/geneSymbolCorrection.R | 2 R/getGEOData.R | 119 ++++-- R/immunoStatesMeta.R | 2 R/imputeSex.R | 2 R/metaAnalysisFoundation.R | 4 R/multiplePRCPlot.R | 2 R/multipleROCPlot.R | 1 R/pooledROCplot.R | 4 R/prcPlot.R | 2 R/predvalPlot.R |only R/runMetaAnalysis.R | 2 R/summaryROCPlot.R | 2 build/vignette.rds |binary inst/doc/MetaIntegrator.Rmd | 6 inst/doc/MetaIntegrator.html | 629 +++++++++++++++++++++++++++++--- inst/doc/MetaIntegratorRealExample.Rmd | 1 inst/doc/MetaIntegratorRealExample.html | 386 +++++++++++++++---- man/filterGenes.Rd | 3 man/forestPlot.Rd | 10 man/geneSymbolCorrection.Rd | 2 man/getGEOData.Rd | 5 man/immunoStatesMeta.Rd | 3 man/imputeSex.Rd | 2 man/lincsCorrelate.Rd | 6 man/lincsTools.Rd | 5 man/multiplePRCPlot.Rd | 6 man/multipleROCPlot.Rd | 3 man/pooledROCPlot.Rd | 10 man/prcPlot.Rd | 11 man/predvalPlot.Rd |only man/runMetaAnalysis.Rd | 2 man/summaryROCCalc.Rd | 3 man/summaryROCPlot.Rd | 3 vignettes/MetaIntegrator.Rmd | 6 vignettes/MetaIntegratorRealExample.Rmd | 1 41 files changed, 1099 insertions(+), 263 deletions(-)
More information about MetaIntegrator at CRAN
Permanent link
Title: R Implementation of Leiden Clustering Algorithm
Description: Implements the 'Python leidenalg' module to be called in R.
Enables clustering using the leiden algorithm for partition a graph into communities.
See the 'Python' repository for more details: <https://github.com/vtraag/leidenalg>
Traag et al (2018) From Louvain to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Author: S. Thomas Kelly [aut, cre, trl],
Vincent A. Traag [com]
Maintainer: S. Thomas Kelly <tom.kelly@riken.jp>
Diff between leiden versions 0.3.0 dated 2019-07-15 and 0.3.1 dated 2019-07-23
DESCRIPTION | 8 +- MD5 | 30 ++++----- NAMESPACE | 3 NEWS.md | 6 + R/find_partition.R | 26 +++++--- R/leiden.R | 85 ++++++++++++++++++++++---- inst/CITATION | 4 - inst/doc/benchmarking.R | 8 +- inst/doc/benchmarking.Rmd | 4 - inst/doc/benchmarking.html | 137 ++++++++++++++++++++++--------------------- inst/doc/run_igraph.html | 30 ++++----- inst/doc/run_leiden.html | 28 ++++---- man/leiden.Rd | 7 +- tests/testthat/test_igraph.R | 10 ++- tests/testthat/test_leiden.R | 12 +++ vignettes/benchmarking.Rmd | 4 - 16 files changed, 255 insertions(+), 147 deletions(-)
Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R.
These helpers include 'htmltools::htmlDependency' functions, hierarchy
builders, and conversion tools for 'partykit', 'igraph,' 'table',
and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.8.5 dated 2019-01-29 and 0.8.6 dated 2019-07-23
DESCRIPTION | 10 MD5 | 12 NEWS.md | 4 R/dependencies.R | 4 README.md | 2 inst/www/d3/v5/API.md | 2176 +++++++++++++++++++++--------------------- inst/www/d3/v5/dist/d3.min.js | 4 7 files changed, 1110 insertions(+), 1102 deletions(-)
Title: Resistance Relationship Networks using Graphical LASSO
Description: Novel methods are needed to analyze the large amounts of antimicrobial resistance (AMR) data generated by AMR surveillance programs. This package is used to estimate resistance relationship networks, or 'Rnets', from empirical antimicrobial susceptibility data. These networks can be used to study relationships between antimicrobial resistances (typically measured using MICs) and genes in populations. The 'GitHub' for this package is available at <https://GitHub.com/EpidemiologyDVM/Rnets>. Bug reports and features requests should be directed to the same 'GitHub' site. The methods used in 'Rnets' are available in the following publications: An overview of the method in WJ Love, et al., "Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012" (2016) <doi:10.1371/journal.pcbi.1005160>; The graphical LASSO for sparsity in J Friedman, T Hastie, R Tibshirani "Sparse inverse covariance estimation with the graphical lasso" (2007) <doi:10.1093/biostatistics/kxm045>; L1 penalty selection in H Liu, K Roeder, L Wasserman "Stability Approach to Regularization Selection (StARS) for High Dimensional Graphical Models" (2010) <arXiv:1006.3316>; Modularity for graphs with negative edge weights in S Gomez, P Jensen, A Arenas. "Analysis of community structure in networks of correlated data" (2009) <doi:10.1103/PhysRevE.80.016114>.
Author: William Love [aut, cre]
Maintainer: William Love <wjlove@ncsu.edu>
Diff between Rnets versions 1.0.2 dated 2018-09-11 and 1.2.1 dated 2019-07-23
DESCRIPTION | 25 ++-- MD5 | 62 +++++++----- NAMESPACE | 14 ++ NEWS.md | 3 R/Assign_Emetadata.R | 2 R/Assign_Vmetadata.R | 3 R/Bootstrap_Edge_distn.R |only R/Convert_MICs.R |only R/L1_selection.R | 24 +++- R/T2_MRF_test.R |only R/classes.R | 16 +-- R/methods-igraph.r |only R/methods-plot.R | 216 ++++++++++++++++++++++++++++++------------ R/methods-summary.R | 48 +++++++++ build/vignette.rds |binary data/EC_COORDS.rda |binary data/E_ATTRS.rda |binary data/NARMS_EC_DATA.rda |binary data/V_ATTRS.rda |binary inst/doc/Rnets-vignette.R | 2 inst/doc/Rnets-vignette.Rmd | 2 inst/doc/Rnets-vignette.html | 129 +++++++++++++++---------- man/BootstrapEdgeDistn.Rd |only man/CompareMRF_T2.Rd |only man/Convert_MICs.Rd |only man/L1Selection.Rd | 5 man/degree-rnetBasic.Rd |only man/degree.Rd |only man/edge_density-rnetBasic.Rd |only man/edge_density.Rd |only man/gorder-rnetBasic.Rd |only man/gorder.Rd |only man/gsize-rnetBasic.Rd |only man/gsize.Rd |only man/modularity-rnetBasic.Rd |only man/plot-RnetBasic.Rd | 6 - man/plot-rnet.L1.set.Rd |only man/rnetInput.Rd | 14 +- man/summary-mrf_t2.Rd |only man/tkplot-rnetBasic.Rd |only man/tkplot.Rd |only vignettes/Rnets-vignette.Rmd | 2 42 files changed, 403 insertions(+), 170 deletions(-)
Title: Fit Projected 2D Profiles to Galaxy Images
Description: Get data / Define model / ??? / Profit! 'ProFit' is a Bayesian galaxy fitting tool that uses a fast 'C++' image generation library and a flexible interface to a large number of likelihood samplers.
Author: Aaron Robotham [aut, cre] (<https://orcid.org/0000-0003-0429-3579>),
Dan Taranu [aut] (<https://orcid.org/0000-0001-6268-1882>),
Rodrigo Tobar [aut] (<https://orcid.org/0000-0002-1052-0611>)
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between ProFit versions 1.2.7 dated 2019-04-04 and 1.3.2 dated 2019-07-23
DESCRIPTION | 10 MD5 | 246 ++--- NAMESPACE | 1 R/profitLikeModel.R | 6 R/profitMakeModel.R | 33 R/profitSetupData.R | 34 R/profitUtility.R | 29 build/partial.rdb |binary cleanup | 2 configure | 69 + inst/doc/ProFit-Galaxy-Fit-Example.html | 739 +++++++++++------ inst/doc/ProFit-Make-Model-Image.html | 563 +++++++++--- inst/doc/ProFit-OpenCL-OpenMP.html | 395 +++++++-- inst/doc/ProFit-PSF-Convolution-Can-Be-Convoluted.html | 531 ++++++++---- inst/doc/ProFit-PSF-Fit-Example.html | 653 ++++++++++----- inst/extdata/KiDS/G266035segim.fits |binary inst/extdata/KiDS/G266662segim.fits |binary inst/extdata/KiDS/G267199segim.fits |binary inst/extdata/KiDS/G267489segim.fits |binary inst/extdata/KiDS/G267525segim.fits |binary inst/extdata/KiDS/G278109segim.fits |binary inst/extdata/KiDS/G279148segim.fits |binary man/ProFit-package.Rd | 6 man/profitAvailableConvolvers.Rd | 4 man/profitAvailableIntegrators.Rd | 4 man/profitBenchmark.Rd | 3 man/profitBenchmarkConv.Rd | 2 man/profitBenchmarkResultBest.Rd | 2 man/profitBenchmarkResultStripPointers.Rd | 2 man/profitBruteConv.Rd | 6 man/profitClearCache.Rd | 2 man/profitConvolve.Rd | 6 man/profitConvolvePSF.Rd | 6 man/profitCubaBrokenExp.Rd | 4 man/profitCubaCoreSersic.Rd | 4 man/profitCubaFerrer.Rd | 4 man/profitCubaKing.Rd | 4 man/profitCubaMoffat.Rd | 4 man/profitCubaSersic.Rd | 4 man/profitDataBenchmark.Rd | 5 man/profitDataSetOptionsFromBenchmark.Rd | 2 man/profitDeprojectImageEllipse.Rd | 8 man/profitDownsample.Rd | 4 man/profitEllipse.Rd | 2 man/profitEllipsePlot.Rd | 2 man/profitFlux2Mag.Rd | 4 man/profitGetOpenCLEnvs.Rd | 6 man/profitInterp2d.Rd | 4 man/profitLikeModel.Rd | 2 man/profitMag2Mu.Rd | 2 man/profitMakeConvolver.Rd | 6 man/profitMakeGaussianPSF.Rd | 4 man/profitMakeModel.Rd | 12 man/profitMakePointSource.Rd | 2 man/profitMakePriors.Rd | 2 man/profitOpenCLEnv.Rd | 9 man/profitOpenCLEnvInfo.Rd | 6 man/profitParseLikefunc.Rd | 2 man/profitPoissonMonteCarlo.Rd | 4 man/profitRemakeModelList.Rd | 2 man/profitSetupData.Rd | 4 src/Makevars.win | 2 src/libprofit/VERSION | 2 src/libprofit/include/profit/brokenexponential.h | 14 src/libprofit/include/profit/common.h | 76 + src/libprofit/include/profit/config.h.in | 12 src/libprofit/include/profit/convolve.h | 48 - src/libprofit/include/profit/convolver_impl.h | 53 - src/libprofit/include/profit/coresersic.h | 14 src/libprofit/include/profit/dot_product.h |only src/libprofit/include/profit/exceptions.h | 55 - src/libprofit/include/profit/ferrer.h | 12 src/libprofit/include/profit/fft.h | 2 src/libprofit/include/profit/fft_impl.h | 166 +-- src/libprofit/include/profit/image.h | 396 ++++++--- src/libprofit/include/profit/king.h | 14 src/libprofit/include/profit/library.h | 10 src/libprofit/include/profit/model.h | 81 + src/libprofit/include/profit/moffat.h | 16 src/libprofit/include/profit/null.h | 18 src/libprofit/include/profit/omp_utils.h |only src/libprofit/include/profit/opencl.h | 8 src/libprofit/include/profit/opencl_impl.h | 5 src/libprofit/include/profit/profile.h | 103 +- src/libprofit/include/profit/profit.h | 1 src/libprofit/include/profit/psf.h | 12 src/libprofit/include/profit/radial.h | 48 - src/libprofit/include/profit/sersic.h | 18 src/libprofit/include/profit/sky.h | 12 src/libprofit/include/profit/utils.h | 55 + src/libprofit/src/brokenexponential.cpp | 53 - src/libprofit/src/cl/brokenexponential-double.cl | 6 src/libprofit/src/cl/brokenexponential-float.cl | 7 src/libprofit/src/cl/common-double.cl | 4 src/libprofit/src/cl/common-float.cl | 4 src/libprofit/src/cl/convolve-double.cl | 5 src/libprofit/src/cl/convolve-float.cl | 5 src/libprofit/src/cl/coresersic-double.cl | 4 src/libprofit/src/cl/coresersic-float.cl | 5 src/libprofit/src/cl/ferrer-double.cl | 4 src/libprofit/src/cl/ferrer-float.cl | 5 src/libprofit/src/cl/king-double.cl | 4 src/libprofit/src/cl/king-float.cl | 5 src/libprofit/src/cl/moffat-double.cl | 4 src/libprofit/src/cl/moffat-float.cl | 5 src/libprofit/src/cl/sersic-double.cl | 4 src/libprofit/src/cl/sersic-float.cl | 5 src/libprofit/src/convolve.cpp | 419 ++++----- src/libprofit/src/coresersic.cpp | 53 - src/libprofit/src/exceptions.cpp | 45 - src/libprofit/src/ferrer.cpp | 34 src/libprofit/src/fft.cpp | 243 +---- src/libprofit/src/image.cpp | 257 ++++- src/libprofit/src/king.cpp | 43 src/libprofit/src/library.cpp | 93 +- src/libprofit/src/model.cpp | 347 +++++-- src/libprofit/src/moffat.cpp | 37 src/libprofit/src/opencl.cpp | 159 +-- src/libprofit/src/profile.cpp | 128 +- src/libprofit/src/psf.cpp | 65 - src/libprofit/src/radial.cpp | 326 +++---- src/libprofit/src/sersic.cpp | 88 -- src/libprofit/src/sky.cpp | 27 src/libprofit/src/utils.cpp | 174 ++-- src/r_profit.cpp | 47 - 125 files changed, 4553 insertions(+), 2886 deletions(-)
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to
the Windows, OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre] (<https://orcid.org/0000-0002-4387-3384>),
Louis Maddox [ctb],
Steve Simpson [ctb],
Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.6.0 dated 2019-04-15 and 0.7.0 dated 2019-07-23
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 8 ++++++++ R/clipboard.R | 25 +++++++++++++++---------- R/utils.R | 36 +++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/developing-with-clipr.Rmd | 2 +- inst/doc/developing-with-clipr.html | 6 +++--- man/clipr_available.Rd | 17 ++++++++++------- man/read_clip.Rd | 8 +++++++- man/write_clip.Rd | 13 +++++++------ tests/testthat/test-diagnostics.R | 2 +- vignettes/developing-with-clipr.Rmd | 2 +- 13 files changed, 89 insertions(+), 60 deletions(-)
Title: Client for the Comprehensive Knowledge Archive Network ('CKAN')
API
Description: Client for 'CKAN' API (<https://ckan.org/>). Includes interface
to 'CKAN' 'APIs' for search, list, show for packages, organizations, and
resources. In addition, provides an interface to the 'datastore' API.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Imanuel Costigan [aut],
Wush Wu [aut] (<https://orcid.org/0000-0001-5180-0567>),
Florian Mayer [aut] (<https://orcid.org/0000-0003-4269-4242>),
Sharla Gelfand [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ckanr versions 0.1.0 dated 2015-10-22 and 0.3.0 dated 2019-07-23
ckanr-0.1.0/ckanr/R/fetch.R |only ckanr-0.1.0/ckanr/inst/doc/ckanr_vignette.Rmd |only ckanr-0.1.0/ckanr/inst/doc/ckanr_vignette.html |only ckanr-0.1.0/ckanr/inst/vign/ckanr_vignette.Rmd |only ckanr-0.1.0/ckanr/inst/vign/ckanr_vignette.md |only ckanr-0.1.0/ckanr/man/fetch.Rd |only ckanr-0.1.0/ckanr/man/user_followee_list.Rd |only ckanr-0.1.0/ckanr/vignettes/ckanr_vignette.Rmd |only ckanr-0.3.0/ckanr/DESCRIPTION | 52 + ckanr-0.3.0/ckanr/LICENSE | 2 ckanr-0.3.0/ckanr/MD5 | 341 +++++----- ckanr-0.3.0/ckanr/NAMESPACE | 49 + ckanr-0.3.0/ckanr/NEWS.md |only ckanr-0.3.0/ckanr/R/as-ckan_group.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_organization.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_package.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_related.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_resource.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_tag.R | 10 ckanr-0.3.0/ckanr/R/as-ckan_user.R | 18 ckanr-0.3.0/ckanr/R/changes.R | 12 ckanr-0.3.0/ckanr/R/ckan_fetch.R |only ckanr-0.3.0/ckanr/R/ckan_info.R | 25 ckanr-0.3.0/ckanr/R/ckanr-package.R | 15 ckanr-0.3.0/ckanr/R/ckanr_settings.R | 30 ckanr-0.3.0/ckanr/R/dashboard_activity_list.R | 10 ckanr-0.3.0/ckanr/R/dashboard_count.R | 13 ckanr-0.3.0/ckanr/R/dbi.R |only ckanr-0.3.0/ckanr/R/dplyr.R |only ckanr-0.3.0/ckanr/R/ds_create.R |only ckanr-0.3.0/ckanr/R/ds_create_dataset.R | 56 - ckanr-0.3.0/ckanr/R/ds_search.R | 32 ckanr-0.3.0/ckanr/R/ds_search_sql.R | 18 ckanr-0.3.0/ckanr/R/group_create.R | 4 ckanr-0.3.0/ckanr/R/group_delete.R | 8 ckanr-0.3.0/ckanr/R/group_list.R | 8 ckanr-0.3.0/ckanr/R/group_patch.R | 9 ckanr-0.3.0/ckanr/R/group_show.R | 10 ckanr-0.3.0/ckanr/R/group_update.R | 7 ckanr-0.3.0/ckanr/R/license_list.R | 7 ckanr-0.3.0/ckanr/R/organization_create.R | 21 ckanr-0.3.0/ckanr/R/organization_delete.R |only ckanr-0.3.0/ckanr/R/organization_list.R | 24 ckanr-0.3.0/ckanr/R/organization_show.R | 18 ckanr-0.3.0/ckanr/R/package_activity_list.R | 12 ckanr-0.3.0/ckanr/R/package_create.R | 4 ckanr-0.3.0/ckanr/R/package_delete.R | 8 ckanr-0.3.0/ckanr/R/package_list.R | 9 ckanr-0.3.0/ckanr/R/package_list_current.R | 11 ckanr-0.3.0/ckanr/R/package_patch.R | 14 ckanr-0.3.0/ckanr/R/package_revision_list.R | 10 ckanr-0.3.0/ckanr/R/package_search.R | 68 + ckanr-0.3.0/ckanr/R/package_show.R | 15 ckanr-0.3.0/ckanr/R/package_update.R | 22 ckanr-0.3.0/ckanr/R/ping.R | 7 ckanr-0.3.0/ckanr/R/related_create.R | 4 ckanr-0.3.0/ckanr/R/related_delete.R | 9 ckanr-0.3.0/ckanr/R/related_list.R | 12 ckanr-0.3.0/ckanr/R/related_show.R | 13 ckanr-0.3.0/ckanr/R/related_update.R | 4 ckanr-0.3.0/ckanr/R/resource_create.R | 29 ckanr-0.3.0/ckanr/R/resource_delete.R | 9 ckanr-0.3.0/ckanr/R/resource_patch.R | 9 ckanr-0.3.0/ckanr/R/resource_search.R | 8 ckanr-0.3.0/ckanr/R/resource_show.R | 12 ckanr-0.3.0/ckanr/R/resource_update.R | 61 + ckanr-0.3.0/ckanr/R/revision_list.R | 7 ckanr-0.3.0/ckanr/R/servers.R | 6 ckanr-0.3.0/ckanr/R/tag_create.R | 28 ckanr-0.3.0/ckanr/R/tag_list.R | 11 ckanr-0.3.0/ckanr/R/tag_search.R | 13 ckanr-0.3.0/ckanr/R/tag_show.R | 11 ckanr-0.3.0/ckanr/R/user_activity_list.R | 10 ckanr-0.3.0/ckanr/R/user_create.R |only ckanr-0.3.0/ckanr/R/user_delete.R |only ckanr-0.3.0/ckanr/R/user_followee_count.R | 9 ckanr-0.3.0/ckanr/R/user_follower_count.R | 10 ckanr-0.3.0/ckanr/R/user_follower_list.R | 11 ckanr-0.3.0/ckanr/R/user_list.R | 13 ckanr-0.3.0/ckanr/R/user_show.R | 12 ckanr-0.3.0/ckanr/R/zzz.R | 78 +- ckanr-0.3.0/ckanr/README.md | 106 ++- ckanr-0.3.0/ckanr/build/vignette.rds |binary ckanr-0.3.0/ckanr/inst/doc/ckanr.Rmd |only ckanr-0.3.0/ckanr/inst/doc/ckanr.html |only ckanr-0.3.0/ckanr/inst/examples/mapbox.html |only ckanr-0.3.0/ckanr/inst/vign/ckanr.Rmd |only ckanr-0.3.0/ckanr/inst/vign/ckanr.md |only ckanr-0.3.0/ckanr/man/as.ckan_group.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_organization.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_package.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_related.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_resource.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_tag.Rd | 5 ckanr-0.3.0/ckanr/man/as.ckan_user.Rd | 13 ckanr-0.3.0/ckanr/man/changes.Rd | 9 ckanr-0.3.0/ckanr/man/ckan_classes.Rd | 2 ckanr-0.3.0/ckanr/man/ckan_fetch.Rd |only ckanr-0.3.0/ckanr/man/ckan_info.Rd | 13 ckanr-0.3.0/ckanr/man/ckanr-deprecated.Rd |only ckanr-0.3.0/ckanr/man/ckanr-package.Rd | 6 ckanr-0.3.0/ckanr/man/ckanr_settings.Rd | 14 ckanr-0.3.0/ckanr/man/ckanr_setup.Rd | 18 ckanr-0.3.0/ckanr/man/dashboard_activity_list.Rd | 13 ckanr-0.3.0/ckanr/man/dashboard_count.Rd | 15 ckanr-0.3.0/ckanr/man/ds_create.Rd | 26 ckanr-0.3.0/ckanr/man/ds_create_dataset.Rd | 17 ckanr-0.3.0/ckanr/man/ds_search.Rd | 28 ckanr-0.3.0/ckanr/man/ds_search_sql.Rd | 10 ckanr-0.3.0/ckanr/man/group_create.Rd | 19 ckanr-0.3.0/ckanr/man/group_delete.Rd | 11 ckanr-0.3.0/ckanr/man/group_list.Rd | 8 ckanr-0.3.0/ckanr/man/group_patch.Rd | 11 ckanr-0.3.0/ckanr/man/group_show.Rd | 7 ckanr-0.3.0/ckanr/man/group_update.Rd | 5 ckanr-0.3.0/ckanr/man/license_list.Rd | 8 ckanr-0.3.0/ckanr/man/organization_create.Rd | 14 ckanr-0.3.0/ckanr/man/organization_delete.Rd |only ckanr-0.3.0/ckanr/man/organization_list.Rd | 14 ckanr-0.3.0/ckanr/man/organization_show.Rd | 9 ckanr-0.3.0/ckanr/man/package_activity_list.Rd | 13 ckanr-0.3.0/ckanr/man/package_create.Rd | 17 ckanr-0.3.0/ckanr/man/package_delete.Rd | 12 ckanr-0.3.0/ckanr/man/package_list.Rd | 7 ckanr-0.3.0/ckanr/man/package_list_current.Rd | 7 ckanr-0.3.0/ckanr/man/package_patch.Rd | 12 ckanr-0.3.0/ckanr/man/package_revision_list.Rd | 10 ckanr-0.3.0/ckanr/man/package_search.Rd | 55 + ckanr-0.3.0/ckanr/man/package_show.Rd | 9 ckanr-0.3.0/ckanr/man/package_update.Rd | 15 ckanr-0.3.0/ckanr/man/ping.Rd | 8 ckanr-0.3.0/ckanr/man/pipe.Rd | 3 ckanr-0.3.0/ckanr/man/related_create.Rd | 13 ckanr-0.3.0/ckanr/man/related_delete.Rd | 12 ckanr-0.3.0/ckanr/man/related_list.Rd | 7 ckanr-0.3.0/ckanr/man/related_show.Rd | 10 ckanr-0.3.0/ckanr/man/related_update.Rd | 13 ckanr-0.3.0/ckanr/man/resource_create.Rd | 25 ckanr-0.3.0/ckanr/man/resource_delete.Rd | 12 ckanr-0.3.0/ckanr/man/resource_patch.Rd | 11 ckanr-0.3.0/ckanr/man/resource_search.Rd | 7 ckanr-0.3.0/ckanr/man/resource_show.Rd | 10 ckanr-0.3.0/ckanr/man/resource_update.Rd | 40 - ckanr-0.3.0/ckanr/man/revision_list.Rd | 8 ckanr-0.3.0/ckanr/man/servers.Rd | 4 ckanr-0.3.0/ckanr/man/src_ckan.Rd |only ckanr-0.3.0/ckanr/man/tag_create.Rd | 27 ckanr-0.3.0/ckanr/man/tag_list.Rd | 7 ckanr-0.3.0/ckanr/man/tag_search.Rd | 10 ckanr-0.3.0/ckanr/man/tag_show.Rd | 7 ckanr-0.3.0/ckanr/man/user_activity_list.Rd | 11 ckanr-0.3.0/ckanr/man/user_create.Rd |only ckanr-0.3.0/ckanr/man/user_delete.Rd |only ckanr-0.3.0/ckanr/man/user_followee_count.Rd | 10 ckanr-0.3.0/ckanr/man/user_follower_count.Rd | 10 ckanr-0.3.0/ckanr/man/user_follower_list.Rd |only ckanr-0.3.0/ckanr/man/user_list.Rd | 7 ckanr-0.3.0/ckanr/man/user_show.Rd | 11 ckanr-0.3.0/ckanr/tests/testthat/helper-ckanr.R | 79 ++ ckanr-0.3.0/ckanr/tests/testthat/test-changes.R | 15 ckanr-0.3.0/ckanr/tests/testthat/test-ckan_fetch.R |only ckanr-0.3.0/ckanr/tests/testthat/test-ckanr_settings.R | 2 ckanr-0.3.0/ckanr/tests/testthat/test-dplyr.R |only ckanr-0.3.0/ckanr/tests/testthat/test-ds_create_dataset.R | 97 +- ckanr-0.3.0/ckanr/tests/testthat/test-ds_search.R | 15 ckanr-0.3.0/ckanr/tests/testthat/test-ds_search_sql.R | 13 ckanr-0.3.0/ckanr/tests/testthat/test-group_list.R | 13 ckanr-0.3.0/ckanr/tests/testthat/test-group_show.R | 18 ckanr-0.3.0/ckanr/tests/testthat/test-license_list.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-organization_list.R | 27 ckanr-0.3.0/ckanr/tests/testthat/test-organization_show.R | 14 ckanr-0.3.0/ckanr/tests/testthat/test-package_activity_list.R | 8 ckanr-0.3.0/ckanr/tests/testthat/test-package_list.R | 7 ckanr-0.3.0/ckanr/tests/testthat/test-package_list_current.R | 9 ckanr-0.3.0/ckanr/tests/testthat/test-package_revision_list.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-package_search.R | 5 ckanr-0.3.0/ckanr/tests/testthat/test-package_show.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-ping.R | 2 ckanr-0.3.0/ckanr/tests/testthat/test-resource_search.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-resource_show.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-resource_update.R | 50 + ckanr-0.3.0/ckanr/tests/testthat/test-revision_list.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-tag_list.R | 5 ckanr-0.3.0/ckanr/tests/testthat/test-tag_search.R | 3 ckanr-0.3.0/ckanr/tests/testthat/test-tag_show.R | 19 ckanr-0.3.0/ckanr/tests/testthat/test-user_list.R | 3 ckanr-0.3.0/ckanr/vignettes/ckanr.Rmd |only 187 files changed, 1684 insertions(+), 1022 deletions(-)