Title: Nonparametric Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (2017) <https://biostats.bepress.com/uwbiostat/paper422/>.
Author: Brian D. Williamson [aut, cre],
Noah Simon [aut],
Marco Carone [aut]
Maintainer: Brian D. Williamson <brianw26@uw.edu>
Diff between vimp versions 1.1.4 dated 2018-10-14 and 1.1.5 dated 2019-08-09
vimp-1.1.4/vimp/inst/doc/introduction.R |only vimp-1.1.4/vimp/inst/doc/introduction.Rmd |only vimp-1.1.4/vimp/inst/doc/introduction.html |only vimp-1.1.4/vimp/tests/testthat/test_cv_nodonsker_vimp_regression.R |only vimp-1.1.4/vimp/tests/testthat/test_cv_vimp_regression.R |only vimp-1.1.5/vimp/DESCRIPTION | 8 vimp-1.1.5/vimp/MD5 | 24 vimp-1.1.5/vimp/build/vignette.rds |binary vimp-1.1.5/vimp/inst/doc/introduction_to_vimp.R | 2 vimp-1.1.5/vimp/inst/doc/introduction_to_vimp.Rmd | 2 vimp-1.1.5/vimp/inst/doc/introduction_to_vimp.html | 908 ++++++---- vimp-1.1.5/vimp/tests/testthat/test_average_vimp_regression.R | 9 vimp-1.1.5/vimp/tests/testthat/test_cv_vim.R |only vimp-1.1.5/vimp/tests/testthat/test_merge_vimp_regression.R | 10 vimp-1.1.5/vimp/tests/testthat/test_vimp_regression.R | 42 vimp-1.1.5/vimp/vignettes/introduction_to_vimp.Rmd | 2 16 files changed, 670 insertions(+), 337 deletions(-)
Title: Super Learner Prediction
Description: Implements the super learner prediction method and contains a
library of prediction algorithms to be used in the super learner.
Author: Eric Polley [aut, cre],
Erin LeDell [aut],
Chris Kennedy [aut],
Sam Lendle [ctb],
Mark van der Laan [aut, ths]
Maintainer: Eric Polley <polley.eric@mayo.edu>
Diff between SuperLearner versions 2.0-24 dated 2018-08-11 and 2.0-25 dated 2019-08-09
SuperLearner-2.0-24/SuperLearner/R/SL.dbarts.R |only SuperLearner-2.0-24/SuperLearner/inst/doc/SuperLearnerPresent.Rnw |only SuperLearner-2.0-24/SuperLearner/inst/doc/SuperLearnerPresent.pdf |only SuperLearner-2.0-24/SuperLearner/man/SL.dbarts.Rd |only SuperLearner-2.0-24/SuperLearner/man/predict.SL.dbarts.Rd |only SuperLearner-2.0-24/SuperLearner/tests/cran |only SuperLearner-2.0-24/SuperLearner/tests/testthat/test-dbarts.R |only SuperLearner-2.0-24/SuperLearner/vignettes/SuperLearnerPresent.Rnw |only SuperLearner-2.0-25/SuperLearner/DESCRIPTION | 14 SuperLearner-2.0-25/SuperLearner/MD5 | 52 SuperLearner-2.0-25/SuperLearner/NAMESPACE | 1 SuperLearner-2.0-25/SuperLearner/R/SL.biglasso.R | 5 SuperLearner-2.0-25/SuperLearner/R/SL.gam.R | 4 SuperLearner-2.0-25/SuperLearner/R/SL.glmnet.R | 4 SuperLearner-2.0-25/SuperLearner/R/SL.ksvm.R | 6 SuperLearner-2.0-25/SuperLearner/R/SL.nnls.R | 2 SuperLearner-2.0-25/SuperLearner/R/SuperLearner.R | 32 SuperLearner-2.0-25/SuperLearner/R/control.R | 6 SuperLearner-2.0-25/SuperLearner/R/internals.R | 47 SuperLearner-2.0-25/SuperLearner/R/listWrapper.R | 17 SuperLearner-2.0-25/SuperLearner/R/screen.template.R | 4 SuperLearner-2.0-25/SuperLearner/build/vignette.rds |binary SuperLearner-2.0-25/SuperLearner/inst/NEWS | 13 SuperLearner-2.0-25/SuperLearner/inst/doc/Guide-to-SuperLearner.R | 511 +-- SuperLearner-2.0-25/SuperLearner/inst/doc/Guide-to-SuperLearner.Rmd | 177 - SuperLearner-2.0-25/SuperLearner/inst/doc/Guide-to-SuperLearner.html | 1379 ++++++---- SuperLearner-2.0-25/SuperLearner/man/SL.xgboost.Rd | 6 SuperLearner-2.0-25/SuperLearner/man/SuperLearner.Rd | 10 SuperLearner-2.0-25/SuperLearner/man/SuperLearner.control.Rd | 5 SuperLearner-2.0-25/SuperLearner/tests/testthat.R | 8 SuperLearner-2.0-25/SuperLearner/vignettes/Guide-to-SuperLearner.Rmd | 177 - 31 files changed, 1415 insertions(+), 1065 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.3.4 dated 2019-02-09 and 0.4.0 dated 2019-08-09
DESCRIPTION | 8 +++--- MD5 | 38 ++++++++++++++-------------- NEWS.md | 14 ++++++++++ R/RequestPattern.R | 46 ++++++++++++++++++++++++++++++++--- R/StubbedRequest.R | 12 +++++---- R/adapter-crul.R | 4 +-- R/adapter-httr.R | 2 - R/stub_request.R | 21 +++++++++++++++ README.md | 14 ++++++---- man/HeadersPattern.Rd | 9 ++++++ man/MethodPattern.Rd | 7 +++++ man/RequestPattern.Rd | 15 +++++++++++ man/StubbedRequest.Rd | 2 - man/UriPattern.Rd | 9 ++++++ man/stub_request.Rd | 21 +++++++++++++++ tests/testthat/test-RequestPattern.R | 6 ++-- tests/testthat/test-StubRegistry.R | 4 +-- tests/testthat/test-to_return.R | 2 - tests/testthat/test-wi_th.R | 2 - tests/testthat/test-zutils.R | 4 +-- 20 files changed, 191 insertions(+), 49 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or
better understand data generating processes. The user specifies a set of
relationships between covariates, and generates data based on these
specifications. The final data sets can represent data from randomized
control trials, repeated measure (longitudinal) designs, and cluster
randomized trials. Missingness can be generated using various
mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.13 dated 2019-05-16 and 0.1.14 dated 2019-08-09
DESCRIPTION | 8 ++++---- MD5 | 40 +++++++++++++++++++++++----------------- NAMESPACE | 3 +++ NEWS.md | 12 +++++++++++- R/RcppExports.R | 4 ++++ R/addColumns.R | 6 +++--- R/addMarkov.R |only R/addPeriods.R | 27 ++++++++++++++++----------- R/delColumns.R | 4 ++-- R/genCluster.R | 21 +++++++++++++++++---- R/genMarkov.R |only R/genNthEvent.R |only R/trtStepWedge.R | 25 +++++++++++++++++++++---- build/vignette.rds |binary inst/doc/simstudy.html | 10 +++++++--- man/addColumns.Rd | 6 +++--- man/addMarkov.Rd |only man/addPeriods.Rd | 4 +++- man/genCluster.Rd | 7 ++++++- man/genMarkov.Rd |only man/genNthEvent.Rd |only man/trtStepWedge.Rd | 12 +++++++++++- src/RcppExports.cpp | 15 +++++++++++++++ src/srcRcpp.cpp | 27 +++++++++++++++++++++++++++ 24 files changed, 176 insertions(+), 55 deletions(-)
Title: Compare H20 or Spark Supervised Regression Models Using Shiny
App
Description: Implementation of a shiny app to easily compare supervised regression model performances.
You provide the data and configure each model parameter directly on the shiny app.
Four main supervised learning algorithms can be tested either on Spark or H2O frameworks to suit your regression problem on a given time series.
Implementation of these time series forecasting methods on R has been done by Shmueli and Lichtendahl (2015, ISBN:0991576632).
Author: Jean Bertin
Maintainer: Jean Bertin <jean.bertin@gadz.org>
Diff between shinyML versions 0.1.0 dated 2019-07-30 and 0.1.1 dated 2019-08-09
DESCRIPTION | 6 - MD5 | 15 ++-- NEWS.md |only R/shiny_h2o.R | 152 +++++++++++++++++++++++++++--------------------- R/shiny_spark.R | 2 README.md | 74 +++++++++++++++++++---- inst/doc/vignettes.html | 12 +-- man/shiny_h2o.Rd | 2 man/shiny_spark.Rd | 2 9 files changed, 169 insertions(+), 96 deletions(-)
Title: Client for OGC Sensor Observation Services
Description: A client for Sensor Observation Services (SOS, see
<https://www.opengeospatial.org/standards/sos>) as specified by the
Open Geospatial Consortium (OGC). With the package users can
retrieve (meta)data from SOS instances and interactively
create requests for near real-time observation
data based on the available sensors, phenomena, observations etc.
using thematic, temporal, and spatial filtering.
Author: Daniel Nuest [cre, aut] (<https://orcid.org/0000-0002-0024-5046>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Ben Graeler [ctb] (<https://orcid.org/0000-0001-5443-4304>),
Benjamin Pross [ctb],
Eike Hinderk Juerrens [ctb],
52°North Initiative for Geospatial Open Source Software GmbH [cph]
Maintainer: Daniel Nuest <daniel.nuest@uni-muenster.de>
Diff between sos4R versions 0.3.0 dated 2019-04-13 and 0.3.1 dated 2019-08-09
sos4R-0.3.0/sos4R/R/Class-XML.R |only sos4R-0.3.1/sos4R/DESCRIPTION | 14 sos4R-0.3.1/sos4R/MD5 | 17 - sos4R-0.3.1/sos4R/NEWS.md | 4 sos4R-0.3.1/sos4R/build/vignette.rds |binary sos4R-0.3.1/sos4R/inst/doc/sos4R-vignette-01-quickstart.html | 30 + sos4R-0.3.1/sos4R/inst/doc/sos4R-vignette-02-ogc-sos.html | 8 sos4R-0.3.1/sos4R/inst/doc/sos4R-vignette-03-sos-operations.html | 159 +++++----- sos4R-0.3.1/sos4R/inst/doc/sos4R-vignette-04-extensions.html | 38 +- sos4R-0.3.1/sos4R/man/sos4R-package.Rd | 4 10 files changed, 148 insertions(+), 126 deletions(-)
Title: Parse XML
Description: Work with XML files using a simple, consistent
interface. Built on top of the 'libxml2' C library.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Jeroen Ooms [aut],
RStudio [cph],
R Foundation [ctb] (Copy of R-project homepage cached as example)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between xml2 versions 1.2.1 dated 2019-07-29 and 1.2.2 dated 2019-08-09
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NAMESPACE | 4 ++++ NEWS.md | 5 +++++ R/S4.R | 38 ++++++++++++++++++++++++++++++++++++++ R/utils.R | 4 ++-- build/xml2.pdf |binary inst/doc/modification.html | 12 ++++++------ man/oldclass.Rd |only src/Makevars.win | 2 +- src/xml2_node.cpp | 11 ++--------- 11 files changed, 71 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-07 0.3.3
2015-09-01 0.3.2
2015-06-03 0.3.1
2015-05-26 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-17 0.2.1
2018-07-09 0.2.0
2018-05-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-26 0.2.19
2019-07-24 0.1.19
More information about thurstonianIRT at CRAN
Permanent link
Title: Accelerating 'ggplot2'
Description: The aim of 'ggplot2' is to aid in visual data investigations. This
focus has led to a lack of facilities for composing specialised plots.
'ggforce' aims to be a collection of mainly new stats and geoms that fills
this gap. All additional functionality is aimed to come through the official
extension system so using 'ggforce' should be a stable experience.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggforce versions 0.2.2 dated 2019-04-23 and 0.3.0 dated 2019-08-09
ggforce-0.2.2/ggforce/build |only ggforce-0.2.2/ggforce/inst |only ggforce-0.2.2/ggforce/vignettes |only ggforce-0.3.0/ggforce/DESCRIPTION | 28 +++--- ggforce-0.3.0/ggforce/MD5 | 93 ++++++++++++----------- ggforce-0.3.0/ggforce/NAMESPACE | 21 +++++ ggforce-0.3.0/ggforce/NEWS.md | 19 ++++ ggforce-0.3.0/ggforce/R/arc_bar.R | 2 ggforce-0.3.0/ggforce/R/autodensity.R |only ggforce-0.3.0/ggforce/R/autohistogram.R |only ggforce-0.3.0/ggforce/R/autopoint.R |only ggforce-0.3.0/ggforce/R/bezier.R | 10 +- ggforce-0.3.0/ggforce/R/bspline.R | 10 +- ggforce-0.3.0/ggforce/R/diagonal.R | 2 ggforce-0.3.0/ggforce/R/ellipse.R | 2 ggforce-0.3.0/ggforce/R/facet_matrix.R |only ggforce-0.3.0/ggforce/R/facet_row.R |only ggforce-0.3.0/ggforce/R/ggforce_package.R | 13 --- ggforce-0.3.0/ggforce/R/link.R | 2 ggforce-0.3.0/ggforce/R/position_auto.R |only ggforce-0.3.0/ggforce/R/position_floatstack.R |only ggforce-0.3.0/ggforce/R/regon.R | 4 ggforce-0.3.0/ggforce/R/spiro.R | 2 ggforce-0.3.0/ggforce/README.md | 7 - ggforce-0.3.0/ggforce/man/facet_grid_paginate.Rd | 2 ggforce-0.3.0/ggforce/man/facet_matrix.Rd |only ggforce-0.3.0/ggforce/man/facet_row.Rd |only ggforce-0.3.0/ggforce/man/figures/logo.png |only ggforce-0.3.0/ggforce/man/figures/logo.svg |only ggforce-0.3.0/ggforce/man/geom_arc.Rd | 3 ggforce-0.3.0/ggforce/man/geom_arc_bar.Rd | 3 ggforce-0.3.0/ggforce/man/geom_autohistogram.Rd |only ggforce-0.3.0/ggforce/man/geom_autopoint.Rd |only ggforce-0.3.0/ggforce/man/geom_bezier.Rd | 3 ggforce-0.3.0/ggforce/man/geom_bspline.Rd | 3 ggforce-0.3.0/ggforce/man/geom_bspline_closed.Rd | 3 ggforce-0.3.0/ggforce/man/geom_circle.Rd | 3 ggforce-0.3.0/ggforce/man/geom_delvor.Rd | 3 ggforce-0.3.0/ggforce/man/geom_diagonal.Rd | 3 ggforce-0.3.0/ggforce/man/geom_diagonal_wide.Rd | 3 ggforce-0.3.0/ggforce/man/geom_ellipse.Rd | 3 ggforce-0.3.0/ggforce/man/geom_link.Rd | 3 ggforce-0.3.0/ggforce/man/geom_mark_circle.Rd | 3 ggforce-0.3.0/ggforce/man/geom_mark_ellipse.Rd | 3 ggforce-0.3.0/ggforce/man/geom_mark_hull.Rd | 3 ggforce-0.3.0/ggforce/man/geom_mark_rect.Rd | 3 ggforce-0.3.0/ggforce/man/geom_parallel_sets.Rd | 3 ggforce-0.3.0/ggforce/man/geom_regon.Rd | 3 ggforce-0.3.0/ggforce/man/geom_shape.Rd | 3 ggforce-0.3.0/ggforce/man/geom_sina.Rd | 3 ggforce-0.3.0/ggforce/man/geom_spiro.Rd | 3 ggforce-0.3.0/ggforce/man/ggforce-extensions.Rd | 25 ++++-- ggforce-0.3.0/ggforce/man/ggforce-package.Rd | 23 +++-- ggforce-0.3.0/ggforce/man/position_auto.Rd |only ggforce-0.3.0/ggforce/man/scale_unit.Rd | 10 +- 55 files changed, 210 insertions(+), 125 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between FrF2 versions 1.7-3 dated 2019-05-03 and 2.0 dated 2019-08-09
DESCRIPTION | 8 MD5 | 56 +-- NAMESPACE | 17 R/CIG.R | 36 + R/CatalogueAccessors.R | 11 R/DanielPlot.R | 10 R/FrF2.R | 415 +++++++++++++++-------- R/FrF2old.R |only R/blockcheck.R | 51 ++ R/blocksplitplot.aliases.shortrep.R | 48 ++ R/colpick.R |only R/estimable2fis.R | 1 R/godolphin.R |only inst/NEWS | 44 ++ man/CIG.Rd | 15 man/CatalogueAccessors.Rd | 20 + man/DanielPlot.Rd | 5 man/FrF2-package.Rd | 14 man/FrF2.Rd | 31 + man/block.Rd | 44 +- man/blockpick.Rd | 22 - man/godolphin.Rd |only man/utilities.blocksplitplot.aliases.shortrep.Rd | 18 man/utilitiesCat.Rd | 3 tests/FrF2test.R | 25 - tests/FrF2test.Rout.save | 302 +++++++++++++--- tests/addcentertest.R | 2 tests/addcentertest.Rout.save | 116 +++--- tests/generators.summary.test.R | 4 tests/generators.summary.test.Rout.save | 12 tests/godolphintest.R |only tests/godolphintest.Rout.save |only 32 files changed, 959 insertions(+), 371 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.2.5 dated 2019-07-22 and 0.2.6 dated 2019-08-09
DESCRIPTION | 6 +++--- MD5 | 31 +++++++++++++++++-------------- NAMESPACE | 4 ++++ NEWS.md | 5 +++++ R/AllGenerics.R | 43 +++++++++++++++++++++++++++++++++++-------- R/ancestor.R | 18 +++++++++++++++++- R/nodeid.R |only inst/doc/tidytree.html | 29 +++++++++++++++++------------ man/MRCA.Rd | 2 +- man/ancestor.Rd | 2 +- man/child.Rd | 2 +- man/groupOTU.Rd | 2 +- man/nodeid.Rd |only man/nodelab.Rd |only man/offspring.Rd | 2 +- man/parent.Rd | 2 +- man/rootnode.Rd | 2 +- man/sibling.Rd | 2 +- 18 files changed, 106 insertions(+), 46 deletions(-)
Title: Simple and Scalable Statistical Modelling in R
Description: Write statistical models in R and fit them by MCMC and optimisation on CPUs and GPUs, using Google 'TensorFlow'.
greta lets you write your own model like in BUGS, JAGS and Stan, except that you write models right in R, it scales well to massive datasets, and it’s easy to extend and build on.
See the website for more information, including tutorials, examples, package documentation, and the greta forum.
Author: Nick Golding [aut, cre] (<https://orcid.org/0000-0001-8916-5570>),
Simon Dirmeier [ctb],
Adam Fleischhacker [ctb],
Shirin Glander [ctb],
Martin Ingram [ctb],
Lee Hazel [ctb],
Tiphaine Martin [ctb],
Matt Mulvahill [ctb],
Michael Quinn [ctb],
David Smith [ctb],
Paul Teetor [ctb],
Jian Yen [ctb]
Maintainer: Nick Golding <nick.golding.research@gmail.com>
Diff between greta versions 0.3.0 dated 2018-10-30 and 0.3.1 dated 2019-08-09
DESCRIPTION | 27 MD5 | 62 - NEWS.md | 12 R/dag_class.R | 12 R/extract_replace_combine.R | 2 R/functions.R | 24 R/inference.R | 12 R/inference_class.R | 55 - R/mixture.R | 8 R/node_types.R | 11 R/operators.R | 4 R/optimisers.R | 20 R/package.R | 6 R/probability_distributions.R | 69 -- R/tf_functions.R | 26 R/utils.R | 49 - build/vignette.rds |binary inst/WORDLIST |only inst/doc/example_models.html | 991 +++++++++++++++++------------ inst/doc/get_started.Rmd | 10 inst/doc/get_started.html | 505 ++++++++++---- inst/examples/linear_finnish_horseshoe.Rmd | 2 man/greta.Rd | 6 man/inference.Rd | 11 tests/spelling.R |only tests/testthat/helpers.R | 20 tests/testthat/test_distributions.R | 2 tests/testthat/test_inference.R | 11 tests/testthat/test_posteriors.R | 1 vignettes/figures/coef_graph.png |binary vignettes/figures/full_graph.png |binary vignettes/figures/likelihood_graph.png |binary vignettes/get_started.Rmd | 10 33 files changed, 1228 insertions(+), 740 deletions(-)