Title: Local Randomization Methods for RD Designs
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. Under the local randomization approach, RD designs can be interpreted as randomized experiments inside a window around the cutoff. This package provides tools to perform randomization inference for RD designs under local randomization: rdrandinf() to perform hypothesis testing using randomization inference, rdwinselect() to select a window around the cutoff in which randomization is likely to hold, rdsensitivity() to assess the sensitivity of the results to different window lengths and null hypotheses and rdrbounds() to construct Rosenbaum bounds for sensitivity to unobserved confounders. See Cattaneo, Titiunik and Vazquez-Bare (2016) <https://sites.google.com/site/rdpackages/rdlocrand/Cattaneo-Titiunik-VazquezBare_2016_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdlocrand versions 0.4 dated 2019-03-13 and 0.5 dated 2019-08-21
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/rdlocrand_fun.R | 2 +- R/rdlocrand_package.R | 6 +++--- R/rdrandinf.R | 6 +++--- R/rdrbounds.R | 6 +++--- R/rdsensitivity.R | 6 +++--- R/rdwinselect.R | 6 +++--- man/rdlocrand-package.Rd | 6 +++--- man/rdrandinf.Rd | 17 +++++++++-------- man/rdrbounds.Rd | 6 +++--- man/rdsensitivity.Rd | 13 +++++++------ man/rdwinselect.Rd | 16 ++++++++-------- 13 files changed, 63 insertions(+), 61 deletions(-)
Title: Dynamic Time Warping Algorithms
Description: A comprehensive implementation of dynamic time warping (DTW) algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points of two time series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on. Provides cumulative distances, alignments, specialized plot styles, etc.
Author: Toni Giorgino <toni.giorgino@gmail.com>,
Maintainer: Toni Giorgino <toni.giorgino@gmail.com>
Diff between dtw versions 1.20-1 dated 2018-05-18 and 1.21-1 dated 2019-08-21
dtw-1.20-1/dtw/R/triangleFixing.R |only dtw-1.20-1/dtw/R/zzz.R |only dtw-1.20-1/dtw/build/partial.rdb |only dtw-1.20-1/dtw/man/triangleFixing.Rd |only dtw-1.21-1/dtw/DESCRIPTION | 10 dtw-1.21-1/dtw/MD5 | 84 ++---- dtw-1.21-1/dtw/NAMESPACE | 89 ++---- dtw-1.21-1/dtw/R/backtrack.R | 2 dtw-1.21-1/dtw/R/countPaths.R | 33 ++ dtw-1.21-1/dtw/R/data.R |only dtw-1.21-1/dtw/R/dtw-internal.R | 17 + dtw-1.21-1/dtw/R/dtw-package.R |only dtw-1.21-1/dtw/R/dtw.R | 246 +++++++++++++++++ dtw-1.21-1/dtw/R/dtwDist.R | 111 +++++++ dtw-1.21-1/dtw/R/globalCostMatrix.R | 4 dtw-1.21-1/dtw/R/mvm.R | 64 ++++ dtw-1.21-1/dtw/R/plot.dtw.R | 256 +++++++++++++++++- dtw-1.21-1/dtw/R/stepPattern.R | 269 ++++++++++++++++++- dtw-1.21-1/dtw/R/warp.R | 74 +++++ dtw-1.21-1/dtw/R/warpArea.R | 45 +++ dtw-1.21-1/dtw/R/window.R | 104 +++++++ dtw-1.21-1/dtw/build/vignette.rds |binary dtw-1.21-1/dtw/demo/dtw.R | 2 dtw-1.21-1/dtw/inst/ChangeLog | 3 dtw-1.21-1/dtw/inst/doc/dtw.R | 1 dtw-1.21-1/dtw/inst/doc/dtw.Rnw | 7 dtw-1.21-1/dtw/inst/doc/dtw.pdf |binary dtw-1.21-1/dtw/man/aami.Rd | 77 ++--- dtw-1.21-1/dtw/man/countPaths.Rd | 46 +-- dtw-1.21-1/dtw/man/dtw-internal.Rd | 12 dtw-1.21-1/dtw/man/dtw-package.Rd | 138 ++++----- dtw-1.21-1/dtw/man/dtw.Rd | 348 ++++++++++-------------- dtw-1.21-1/dtw/man/dtwDist.Rd | 96 +++--- dtw-1.21-1/dtw/man/dtwPlot.Rd | 129 +++------ dtw-1.21-1/dtw/man/dtwPlotThreeWay.Rd | 117 +++----- dtw-1.21-1/dtw/man/dtwPlotTwoWay.Rd | 118 +++----- dtw-1.21-1/dtw/man/dtwWindowingFunctions.Rd | 182 +++++-------- dtw-1.21-1/dtw/man/mvm.Rd | 76 ++--- dtw-1.21-1/dtw/man/stepPattern.Rd | 391 ++++++++++++---------------- dtw-1.21-1/dtw/man/warp.Rd | 60 ++-- dtw-1.21-1/dtw/man/warpArea.Rd | 49 +-- dtw-1.21-1/dtw/src/Makevars | 2 dtw-1.21-1/dtw/src/computeCM.c | 2 dtw-1.21-1/dtw/src/init.c | 8 dtw-1.21-1/dtw/src/triangleFixing.c | 2 dtw-1.21-1/dtw/vignettes/dtw.Rnw | 7 46 files changed, 2119 insertions(+), 1162 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut, cre, cph],
Sean Hughes [rev] (Sean reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/261>),
Jason Taylor [aut]
Maintainer: Ju Yeong Kim <jkim2345@fredhutch.org>
Diff between DataSpaceR versions 0.6.3 dated 2019-04-05 and 0.7.2 dated 2019-08-21
DESCRIPTION | 14 MD5 | 35 - NAMESPACE | 2 NEWS.md | 12 R/DataSpaceConnection.R | 214 +++++++ R/DataSpaceMab.R |only R/helpers.R | 30 + README.md | 205 ++++--- build/vignette.rds |binary inst/doc/Accessing_Monoconal_Antibody_Data.R |only inst/doc/Accessing_Monoconal_Antibody_Data.Rmd |only inst/doc/Accessing_Monoconal_Antibody_Data.html |only inst/doc/Intro_to_DataSpaceR.R | 3 inst/doc/Intro_to_DataSpaceR.Rmd | 25 inst/doc/Intro_to_DataSpaceR.html | 661 +++++++++++++++++------- man/DataSpaceConnection.Rd | 22 man/DataSpaceMab.Rd |only tests/testthat/test-connection.R | 89 +++ tests/testthat/test-mab.R |only tests/testthat/test-study.R | 6 vignettes/Accessing_Monoconal_Antibody_Data.Rmd |only vignettes/Intro_to_DataSpaceR.Rmd | 25 22 files changed, 1062 insertions(+), 281 deletions(-)
Title: Forest Fire History Analysis
Description: Tools to read, write, parse, and analyze forest fire history data (e.g. FHX). Described in Malevich et al. (2018) <doi:10.1016/j.dendro.2018.02.005>.
Author: Steven Malevich [aut, cre] (<https://orcid.org/0000-0002-4752-8190>),
Christopher Guiterman [ctb] (<https://orcid.org/0000-0002-9706-9332>),
Ellis Margolis [ctb] (<https://orcid.org/0000-0002-0595-9005>)
Maintainer: Steven Malevich <sbmalev@gmail.com>
Diff between burnr versions 0.4.0 dated 2019-07-09 and 0.5.0 dated 2019-08-21
burnr-0.4.0/burnr/man/check_duplicates.Rd |only burnr-0.4.0/burnr/man/find_recording.Rd |only burnr-0.4.0/burnr/man/get_ggplot.Rd |only burnr-0.4.0/burnr/man/list_filestrings.Rd |only burnr-0.4.0/burnr/man/run_sea.Rd |only burnr-0.4.0/burnr/man/site_stats.Rd |only burnr-0.4.0/burnr/tests/testthat/test-empty.R |only burnr-0.5.0/burnr/DESCRIPTION | 24 burnr-0.5.0/burnr/MD5 | 155 +- burnr-0.5.0/burnr/NAMESPACE | 8 burnr-0.5.0/burnr/NEWS.md | 27 burnr-0.5.0/burnr/R/data.R | 93 + burnr-0.5.0/burnr/R/intervals.R | 267 ++-- burnr-0.5.0/burnr/R/io.R | 276 ++-- burnr-0.5.0/burnr/R/plotting.R | 413 ++++-- burnr-0.5.0/burnr/R/sea.R | 445 ++++-- burnr-0.5.0/burnr/R/stats.R | 350 ++--- burnr-0.5.0/burnr/R/sysdata.rda |only burnr-0.5.0/burnr/R/utils.R | 673 +++++++--- burnr-0.5.0/burnr/README.md | 11 burnr-0.5.0/burnr/inst/CITATION |only burnr-0.5.0/burnr/inst/doc/introduction.Rmd | 2 burnr-0.5.0/burnr/inst/doc/introduction.html | 714 +++++------ burnr-0.5.0/burnr/man/as.fhx.Rd |only burnr-0.5.0/burnr/man/as_fhx.Rd |only burnr-0.5.0/burnr/man/composite.Rd | 44 burnr-0.5.0/burnr/man/count_event_position.Rd | 54 burnr-0.5.0/burnr/man/count_injury.Rd | 14 burnr-0.5.0/burnr/man/count_recording.Rd | 14 burnr-0.5.0/burnr/man/count_scar.Rd | 14 burnr-0.5.0/burnr/man/count_year_span.Rd | 16 burnr-0.5.0/burnr/man/delete.Rd | 27 burnr-0.5.0/burnr/man/fhx.Rd | 57 burnr-0.5.0/burnr/man/first_year.Rd | 14 burnr-0.5.0/burnr/man/get_event_years.Rd | 37 burnr-0.5.0/burnr/man/get_series.Rd | 21 burnr-0.5.0/burnr/man/get_year.Rd | 18 burnr-0.5.0/burnr/man/inner_type.Rd | 15 burnr-0.5.0/burnr/man/intervals.Rd | 40 burnr-0.5.0/burnr/man/is.fhx.Rd | 17 burnr-0.5.0/burnr/man/is.intervals.Rd | 9 burnr-0.5.0/burnr/man/is.sea.Rd | 9 burnr-0.5.0/burnr/man/is_fhx.Rd |only burnr-0.5.0/burnr/man/is_intervals.Rd |only burnr-0.5.0/burnr/man/is_sea.Rd |only burnr-0.5.0/burnr/man/last_year.Rd | 15 burnr-0.5.0/burnr/man/lgr2.Rd | 7 burnr-0.5.0/burnr/man/lgr2_meta.Rd | 12 burnr-0.5.0/burnr/man/make_rec_type.Rd | 20 burnr-0.5.0/burnr/man/max.intervals.Rd | 18 burnr-0.5.0/burnr/man/mean.intervals.Rd | 18 burnr-0.5.0/burnr/man/median.intervals.Rd | 18 burnr-0.5.0/burnr/man/min.intervals.Rd | 18 burnr-0.5.0/burnr/man/outer_type.Rd | 15 burnr-0.5.0/burnr/man/percent_scarred.Rd | 23 burnr-0.5.0/burnr/man/pgm.Rd | 16 burnr-0.5.0/burnr/man/pgm_meta.Rd | 27 burnr-0.5.0/burnr/man/pgm_pdsi.Rd | 21 burnr-0.5.0/burnr/man/plot.fhx.Rd | 36 burnr-0.5.0/burnr/man/plot.intervals.Rd | 9 burnr-0.5.0/burnr/man/plot.sea.Rd | 15 burnr-0.5.0/burnr/man/plot_demograph.Rd | 132 +- burnr-0.5.0/burnr/man/plot_intervals_dist.Rd | 30 burnr-0.5.0/burnr/man/plot_sealags.Rd | 30 burnr-0.5.0/burnr/man/plus-.fhx.Rd | 21 burnr-0.5.0/burnr/man/print.intervals.Rd | 18 burnr-0.5.0/burnr/man/print.sea.Rd | 39 burnr-0.5.0/burnr/man/quantile.intervals.Rd | 21 burnr-0.5.0/burnr/man/read_fhx.Rd | 22 burnr-0.5.0/burnr/man/sample_depth.Rd | 11 burnr-0.5.0/burnr/man/sea.Rd | 118 + burnr-0.5.0/burnr/man/series_mean_interval.Rd | 16 burnr-0.5.0/burnr/man/series_names.Rd | 20 burnr-0.5.0/burnr/man/series_stats.Rd | 40 burnr-0.5.0/burnr/man/sort.fhx.Rd | 20 burnr-0.5.0/burnr/man/summary.fhx.Rd | 13 burnr-0.5.0/burnr/man/write_fhx.Rd | 14 burnr-0.5.0/burnr/man/year_range.Rd | 21 burnr-0.5.0/burnr/man/yearly_recording.Rd | 11 burnr-0.5.0/burnr/tests/testthat/test-intervals.R | 16 burnr-0.5.0/burnr/tests/testthat/test-io.R | 1404 +++++++++++----------- burnr-0.5.0/burnr/tests/testthat/test-plotting.R |only burnr-0.5.0/burnr/tests/testthat/test-sea.R | 25 burnr-0.5.0/burnr/tests/testthat/test-stats.R | 36 burnr-0.5.0/burnr/tests/testthat/test-utils.R | 214 ++- burnr-0.5.0/burnr/vignettes/introduction.Rmd | 2 86 files changed, 3981 insertions(+), 2479 deletions(-)
More information about SWMPrExtension at CRAN
Permanent link
Title: Pediatric Complex Chronic Conditions
Description: An implementation of the pediatric complex chronic conditions (CCC)
classification system using R and C++.
Author: Peter DeWitt [aut],
Tell Bennett [aut],
James Feinstein [aut],
Seth Russell [aut, cre]
Maintainer: Seth Russell <seth.russell@ucdenver.edu>
Diff between pccc versions 1.0.2 dated 2018-07-02 and 1.0.3 dated 2019-08-21
DESCRIPTION | 8 MD5 | 22 NEWS.md | 6 build/vignette.rds |binary inst/doc/pccc-example.html | 325 ++++---- inst/doc/pccc-icd-codes.html | 1603 ++++++++++++++++++++-------------------- inst/doc/pccc-overview.html | 225 +++-- src/get_codes.cpp | 52 - tests/testthat/test_ccc.R | 14 tests/testthat/test_ccc_icd10.R | 2 tests/testthat/test_ccc_icd9.R | 2 tests/testthat/test_get_codes.R | 5 12 files changed, 1179 insertions(+), 1085 deletions(-)
Title: Metadata Processing for the German Modification of the ICD-10
Coding System
Description: Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Author: Ewan Donnachie [aut, cre] (<https://orcid.org/0000-0002-0668-0049>)
Maintainer: Ewan Donnachie <ewan@donnachie.net>
Diff between ICD10gm versions 1.0.3 dated 2019-02-12 and 1.0.4 dated 2019-08-21
DESCRIPTION | 11 - MD5 | 24 +- NAMESPACE | 2 NEWS.md | 4 R/icd_expand.R | 26 +- R/icd_history.R | 2 README.md | 10 build/vignette.rds |binary data/icd_meta_blocks.rda |binary data/icd_meta_chapters.rda |binary data/icd_meta_codes.rda |binary data/icd_meta_transition.rda |binary inst/doc/icd10gm_intro.html | 439 ++++++++++++++++++++++++++++++++----------- 13 files changed, 372 insertions(+), 146 deletions(-)
Title: DTR Estimation and Inference via G-Estimation, Dynamic WOLS,
Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv)
Description: Dynamic treatment regime estimation and inference via G-estimation,
dynamic weighted ordinary least squares (dWOLS) and Q-learning. Inference
via bootstrap and (for G-estimation) recursive sandwich estimation. Estimation
and inference for survival outcomes via Dynamic Weighted Survival Modeling
(DWSurv).
Author: Michael Wallace, Erica E M Moodie, David A Stephens and Gabrielle Simoneau
Maintainer: Michael Wallace <michael.wallace@uwaterloo.ca>
Diff between DTRreg versions 1.3 dated 2017-08-30 and 1.4 dated 2019-08-21
DTRreg-1.3/DTRreg/inst |only DTRreg-1.3/DTRreg/man/chooseM.DTRreg.Rd |only DTRreg-1.4/DTRreg/DESCRIPTION | 20 DTRreg-1.4/DTRreg/MD5 | 17 DTRreg-1.4/DTRreg/NAMESPACE | 30 DTRreg-1.4/DTRreg/R/DTRreg.R | 1929 +++++++++++++++++++------------- DTRreg-1.4/DTRreg/man/DTRreg.Rd | 18 DTRreg-1.4/DTRreg/man/DWSurv.Rd |only DTRreg-1.4/DTRreg/man/chooseM.Rd |only DTRreg-1.4/DTRreg/man/confint.DTRreg.Rd |only DTRreg-1.4/DTRreg/man/plot.DTRreg.Rd | 137 +- DTRreg-1.4/DTRreg/man/predict.DTRreg.Rd | 136 +- 12 files changed, 1345 insertions(+), 942 deletions(-)
Title: Model-Based Detection of Disease Clusters
Description: Model-based methods for the detection of disease clusters
using GLMs, GLMMs and zero-inflated models. These methods are described
in 'V. Gómez-Rubio et al.' (2019) <doi:10.18637/jss.v090.i14> and
'V. Gómez-Rubio et al.' (2018) <doi:10.1007/978-3-030-01584-8_1>.
Author: Virgilio Gomez-Rubio, Paula Esther Moraga Serrano, Barry
Rowlingson
Maintainer: Virgilio Gomez-Rubio <virgilio.gomez@uclm.es>
Diff between DClusterm versions 0.2-1 dated 2018-05-28 and 1.0-0 dated 2019-08-21
DClusterm-0.2-1/DClusterm/vignettes/jsslogo.jpg |only DClusterm-1.0-0/DClusterm/DESCRIPTION | 15 DClusterm-1.0-0/DClusterm/MD5 | 38 DClusterm-1.0-0/DClusterm/R/Functions1.R | 22 DClusterm-1.0-0/DClusterm/build/vignette.rds |binary DClusterm-1.0-0/DClusterm/data/NY8.RData |binary DClusterm-1.0-0/DClusterm/data/NY8_clusters.RData |binary DClusterm-1.0-0/DClusterm/data/Navarre.RData |binary DClusterm-1.0-0/DClusterm/data/brainNM.RData |binary DClusterm-1.0-0/DClusterm/data/brainNM_clusters.RData |binary DClusterm-1.0-0/DClusterm/inst/CITATION |only DClusterm-1.0-0/DClusterm/inst/doc/DClusterm.R | 113 - DClusterm-1.0-0/DClusterm/inst/doc/DClusterm.Rnw | 165 +- DClusterm-1.0-0/DClusterm/inst/doc/DClusterm.pdf |binary DClusterm-1.0-0/DClusterm/man/CalcStatClusterGivenCenter.Rd | 4 DClusterm-1.0-0/DClusterm/man/CalcStatsAllClusters.Rd | 4 DClusterm-1.0-0/DClusterm/man/DetectClustersModel.Rd | 14 DClusterm-1.0-0/DClusterm/man/glmAndZIP.iscluster.Rd | 4 DClusterm-1.0-0/DClusterm/vignettes/DClusterm.Rnw | 165 +- DClusterm-1.0-0/DClusterm/vignettes/DClusterm.bib | 756 +++++------- DClusterm-1.0-0/DClusterm/vignettes/Makefile | 2 21 files changed, 628 insertions(+), 674 deletions(-)
Title: Methods and Measures for Brain, Cognitive, and Psychometric
Network Analysis
Description: Implements network analysis and graph theory measures used in neuroscience, cognitive science, and psychology. Methods include various filtering methods and approaches such as threshold, dependency (Kenett, Tumminello, Madi, Gur-Gershogoren, Mantegna, & Ben-Jacob, 2010 <doi:10.1371/journal.pone.0015032>), Information Filtering Networks (Barfuss, Massara, Di Matteo, & Aste, 2016 <doi:10.1103/PhysRevE.94.062306>), and Efficiency-Cost Optimization (Fallani, Latora, & Chavez, 2017 <doi:10.1371/journal.pcbi.1005305>). Brain methods include the recently developed Connectome Predictive Modeling (see references in package). Also implements several network measures including local network characteristics (e.g., centrality), community-level network characteristics (e.g., community centrality), global network characteristics (e.g., clustering coefficient), and various other measures associated with the reliability and reproducibility of network analysis.
Author: Alexander Christensen [aut, cre],
Guido Previde Massara [ctb]
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between NetworkToolbox versions 1.2.3 dated 2019-01-31 and 1.3.0 dated 2019-08-21
NetworkToolbox-1.2.3/NetworkToolbox/R/centlist.R |only NetworkToolbox-1.2.3/NetworkToolbox/R/cpmEV.R |only NetworkToolbox-1.2.3/NetworkToolbox/R/cpmFP.R |only NetworkToolbox-1.2.3/NetworkToolbox/R/cpmFPperm.R |only NetworkToolbox-1.2.3/NetworkToolbox/R/cpmIV.R |only NetworkToolbox-1.2.3/NetworkToolbox/R/nams.R |only NetworkToolbox-1.2.3/NetworkToolbox/man/centlist.Rd |only NetworkToolbox-1.2.3/NetworkToolbox/man/cpmEV.Rd |only NetworkToolbox-1.2.3/NetworkToolbox/man/cpmFP.Rd |only NetworkToolbox-1.2.3/NetworkToolbox/man/cpmFPperm.Rd |only NetworkToolbox-1.2.3/NetworkToolbox/man/cpmIV.Rd |only NetworkToolbox-1.2.3/NetworkToolbox/man/nams.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/DESCRIPTION | 17 NetworkToolbox-1.3.0/NetworkToolbox/MD5 | 147 ++++--- NetworkToolbox-1.3.0/NetworkToolbox/NAMESPACE | 21 - NetworkToolbox-1.3.0/NetworkToolbox/NEWS | 28 + NetworkToolbox-1.3.0/NetworkToolbox/R/LoGo.R | 8 NetworkToolbox-1.3.0/NetworkToolbox/R/MFCF.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/NetworkToolbox.R | 4 NetworkToolbox-1.3.0/NetworkToolbox/R/TMFG.R | 185 ++++++---- NetworkToolbox-1.3.0/NetworkToolbox/R/betweenness.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/binarize.R | 4 NetworkToolbox-1.3.0/NetworkToolbox/R/closeness.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/clustcoeff.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/comcat.R | 123 +++--- NetworkToolbox-1.3.0/NetworkToolbox/R/comm.close.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/comm.eigen.R | 1 NetworkToolbox-1.3.0/NetworkToolbox/R/comm.str.R | 54 ++ NetworkToolbox-1.3.0/NetworkToolbox/R/convert2igraph.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/cpm.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/depend.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/depna.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/desc.R | 4 NetworkToolbox-1.3.0/NetworkToolbox/R/desc.all.R | 28 + NetworkToolbox-1.3.0/NetworkToolbox/R/diversity.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/edgerep.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/gain.functions.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/impact.R | 3 NetworkToolbox-1.3.0/NetworkToolbox/R/kld.R | 7 NetworkToolbox-1.3.0/NetworkToolbox/R/leverage.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/net.coverage.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/node.multidimensional.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/node.redundant.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/pathlengths.R | 9 NetworkToolbox-1.3.0/NetworkToolbox/R/reg.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/rmse.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/rspbc.R | 30 + NetworkToolbox-1.3.0/NetworkToolbox/R/sim.chordal.R |only NetworkToolbox-1.3.0/NetworkToolbox/R/sim.swn.R | 49 +- NetworkToolbox-1.3.0/NetworkToolbox/R/smallworldness.R | 2 NetworkToolbox-1.3.0/NetworkToolbox/R/stable.R | 24 - NetworkToolbox-1.3.0/NetworkToolbox/R/strength.R | 9 NetworkToolbox-1.3.0/NetworkToolbox/R/zzz.R |only NetworkToolbox-1.3.0/NetworkToolbox/inst/CITATION | 11 NetworkToolbox-1.3.0/NetworkToolbox/man/LoGo.Rd | 7 NetworkToolbox-1.3.0/NetworkToolbox/man/MFCF.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/NetworkToolbox-package.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/TMFG.Rd | 33 + NetworkToolbox-1.3.0/NetworkToolbox/man/betweenness.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/binarize.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/closeness.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/clustcoeff.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/comcat.Rd | 10 NetworkToolbox-1.3.0/NetworkToolbox/man/comm.close.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/comm.str.Rd | 29 + NetworkToolbox-1.3.0/NetworkToolbox/man/convert2igraph.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/cpm.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/depend.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/depna.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/desc.Rd | 4 NetworkToolbox-1.3.0/NetworkToolbox/man/desc.all.Rd | 4 NetworkToolbox-1.3.0/NetworkToolbox/man/edgerep.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/gain.functions.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/impact.Rd | 3 NetworkToolbox-1.3.0/NetworkToolbox/man/kld.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/leverage.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/net.coverage.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/node.multidimensional.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/node.redundant.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/reg.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/rmse.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/rspbc.Rd | 9 NetworkToolbox-1.3.0/NetworkToolbox/man/sim.chordal.Rd |only NetworkToolbox-1.3.0/NetworkToolbox/man/sim.swn.Rd | 13 NetworkToolbox-1.3.0/NetworkToolbox/man/smallworldness.Rd | 2 NetworkToolbox-1.3.0/NetworkToolbox/man/stable.Rd | 10 NetworkToolbox-1.3.0/NetworkToolbox/man/strength.Rd | 6 87 files changed, 628 insertions(+), 326 deletions(-)
More information about NetworkToolbox at CRAN
Permanent link
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Romain Lesur [aut, cph] (<https://orcid.org/0000-0002-0721-5595>),
Brent Thorne [aut] (<https://orcid.org/0000-0002-1099-3857>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
RStudio, Inc. [cph],
Adam Hyde [ctb] (paged.js in resources/js/),
Min-Zhong Lu [ctb] (resume.css in resources/css/),
Zulko [ctb] (poster-relaxed.css in resources/css/)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.3 dated 2019-07-15 and 0.4 dated 2019-08-21
DESCRIPTION | 8 MD5 | 24 NEWS.md | 8 R/paged.R | 19 README.md | 4 inst/resources/html/jss_paged.html | 9 inst/resources/html/paged.html | 45 inst/resources/html/poster-jacobs.html | 5 inst/resources/html/poster-relaxed.html | 5 inst/resources/html/thesis.html | 45 inst/resources/js/config.js | 53 - inst/resources/js/hooks.js | 554 ++++++------ inst/rmarkdown/templates/thesis-paged/skeleton/skeleton.Rmd | 23 13 files changed, 434 insertions(+), 368 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.4.6 dated 2019-04-03 and 0.4.7 dated 2019-08-21
DESCRIPTION | 10 LICENSE | 2 MD5 | 50 +-- NEWS | 12 R/chordDiagram.R | 124 ++++--- R/circos.arrow.R | 4 R/circos.nested.R | 69 ++-- R/genomic.R | 169 +++++++--- R/genomic_utils.R | 26 + R/global.R | 38 +- R/plot.R | 555 ++++++++++++++++++----------------- R/raster.R | 2 R/utils.R | 74 +++- build/vignette.rds |binary man/circos.dendrogram.rd | 4 man/circos.genomicAxis.rd | 5 man/circos.initializeWithIdeogram.rd | 2 man/circos.points.rd | 2 man/circos.segments.rd | 2 man/circos.text.rd | 2 man/circos.trackHist.rd | 2 man/circos.trackPlotRegion.rd | 8 man/circos.trackPoints.rd | 2 man/circos.updatePlotRegion.rd | 2 man/read.chromInfo.rd | 4 man/read.cytoband.rd | 4 26 files changed, 679 insertions(+), 495 deletions(-)
Title: Record Everything that Happens in a 'Shiny' Application
Description: Track and record the use of applications and the user's interactions with 'Shiny' inputs.
Allow to save inputs clicked, output generated and eventually errors.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Silex Technologies [fnd] (https://www.silex-ip.com),
iamkun [cph] (dayjs library),
Mozilla [cph] (localForage library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinylogs versions 0.1.6 dated 2019-07-18 and 0.1.7 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ inst/assets/js/shinylogs-localForage.js | 19 ++++++++++++++++--- 4 files changed, 28 insertions(+), 9 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.2.1 dated 2019-01-16 and 0.2.2 dated 2019-08-21
DESCRIPTION | 6 MD5 | 90 +++--- NAMESPACE | 121 ++++---- NEWS.md | 200 +++++++------- R/color_image.R | 38 +- R/draw_key.R | 128 ++++----- R/geom_bgimage.R |only R/geom_emoji.R | 34 +- R/geom_flag.R | 198 +++++++------- R/geom_icon.R | 54 +-- R/geom_image.R | 648 +++++++++++++++++++++++------------------------ R/geom_phylopic.R | 148 +++++----- R/geom_pokemon.R | 76 ++--- R/geom_subview.R | 188 ++++++------- R/geom_twitchemote.R | 60 ++-- R/ggbackground.R | 36 +- R/image_read2.R | 98 +++---- R/reexport.R | 14 - R/theme.R | 86 +++--- README.md | 94 +++--- build/vignette.rds |binary inst/doc/ggimage.R | 176 ++++++------ inst/doc/ggimage.Rmd | 274 +++++++++---------- inst/doc/ggimage.html | 520 +++++++++++++++++++------------------ inst/extdata/medals.txt | 62 ++-- man/draw_key.Rd | 44 +-- man/geom_bgimage.Rd |only man/geom_emoji.Rd | 62 ++-- man/geom_flag.Rd | 62 ++-- man/geom_icon.Rd | 62 ++-- man/geom_image.Rd | 100 +++---- man/geom_phylopic.Rd | 66 ++-- man/geom_pokemon.Rd | 62 ++-- man/geom_subview.Rd | 66 ++-- man/geom_twitchemote.Rd | 62 ++-- man/geom_worldcup2018.Rd | 62 ++-- man/ggbackground.Rd | 48 +-- man/image_read2.Rd | 48 +-- man/list.flag.Rd | 34 +- man/list.icon.Rd | 34 +- man/list.pokemon.Rd | 34 +- man/list.worldcup2018.Rd | 34 +- man/phylopic_uid.Rd | 40 +- man/reexports.Rd | 34 +- man/theme_nothing.Rd | 44 +-- man/theme_transparent.Rd | 40 +- vignettes/ggimage.Rmd | 274 +++++++++---------- 47 files changed, 2349 insertions(+), 2312 deletions(-)
Title: Segmentation and Classification of Accelerometer Data
Description: Segmentation and classification procedures for data from the 'Activinsights GENEActiv' <https://www.activinsights.com/products/geneactiv/> accelerometer that provides the user with a model to guess behaviour from test data where behaviour is missing.
Includes a step counting algorithm, a function to create segmented data with custom features and a function to use recursive partitioning provided in the function rpart() of the 'rpart' package to create classification models.
Author: Chris Campbell [aut],
Aimee Gott [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre],
Activinsights Ltd [cph]
Maintainer: Charles Sweetland <charles@sweetland-solutions.co.uk>
Diff between GENEAclassify versions 1.4.17 dated 2019-05-14 and 1.4.18 dated 2019-08-21
DESCRIPTION | 8 +++--- MD5 | 28 ++++++++++++------------ R/classifyGENEA.R | 13 +++++++---- R/createGENEAmodel.R | 28 ++++++++++++++++++------ R/dataImport.R | 46 ++++++++++++++++++++++++++++------------ R/getGENEAsegments.R | 31 +++++++++++++++----------- R/segmentation.R | 6 +++-- build/vignette.rds |binary inst/doc/GENEAclassifyDemo.html | 6 ++++- man/GENEAclassify-package.Rd | 1 man/classifyGENEA.Rd | 6 +++-- man/createGENEAmodel.Rd | 15 +++++++++---- man/dataImport.Rd | 12 ++++++---- man/getGENEAsegments.Rd | 13 +++++++---- man/segmentation.Rd | 5 +++- 15 files changed, 144 insertions(+), 74 deletions(-)
Title: Analysis and Visualization of Circular Data
Description: Tools for analyzing and visualizing circular data,
including scoring functions for relevant instruments and a
generalization of the bootstrapped structural summary method from
Zimmermann & Wright (2017) <doi:10.1177/1073191115621795> and
functions for creating publication-ready tables and figures from the
results. Future versions will include tools for circular fit and
reliability analyses, as well as visualization enhancements.
Author: Jeffrey Girard [aut, cre] (<https://orcid.org/0000-0002-7359-3746>),
Johannes Zimmermann [aut] (<https://orcid.org/0000-0001-6975-2356>),
Aidan Wright [aut] (<https://orcid.org/0000-0002-2369-0601>)
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between circumplex versions 0.3.1 dated 2019-05-15 and 0.3.2 dated 2019-08-21
DESCRIPTION | 7 - MD5 | 40 +++---- NAMESPACE | 7 - NEWS.md | 154 ++++++++++++++++------------- R/assertions.R | 7 - R/circumplex.R | 3 R/instrument_data.R | 10 + R/instrument_oop.R | 13 +- R/ssm_analysis.R | 138 ++++++++++++------------- R/ssm_bootstrap.R | 41 ++++--- R/ssm_visualization.R | 18 +-- README.md | 3 build/vignette.rds |binary data/iitc.rda |only inst/doc/intermediate-ssm-analysis.html | 6 - inst/doc/introduction-to-ssm-analysis.html | 6 - inst/doc/using-instruments.html | 18 ++- man/iitc.Rd |only man/ssm_analyze.Rd | 4 tests/testthat/test-assertions.R | 25 ++++ tests/testthat/test-instrument_oop.R | 2 tests/testthat/test-ssm_analysis.R | 14 -- 22 files changed, 292 insertions(+), 224 deletions(-)
Title: Track Changes in Data
Description: A framework that allows for easy logging of changes in data.
Main features: start tracking changes by adding a single line of code to
an existing script. Track changes in multiple datasets, using multiple
loggers. Add custom-built loggers or use loggers offered by other
packages.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>)
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between lumberjack versions 0.3.0 dated 2018-07-20 and 1.0.2 dated 2019-08-21
lumberjack-0.3.0/lumberjack/inst/doc/extending.R |only lumberjack-0.3.0/lumberjack/inst/doc/extending.Rmd |only lumberjack-0.3.0/lumberjack/inst/doc/extending.html |only lumberjack-0.3.0/lumberjack/inst/doc/intro.R |only lumberjack-0.3.0/lumberjack/inst/doc/intro.Rmd |only lumberjack-0.3.0/lumberjack/inst/doc/intro.html |only lumberjack-0.3.0/lumberjack/tests/testthat |only lumberjack-0.3.0/lumberjack/tests/testthat.R |only lumberjack-0.3.0/lumberjack/vignettes/extending.Rmd |only lumberjack-0.3.0/lumberjack/vignettes/intro.Rmd |only lumberjack-1.0.2/lumberjack/DESCRIPTION | 24 - lumberjack-1.0.2/lumberjack/MD5 | 77 +-- lumberjack-1.0.2/lumberjack/NAMESPACE | 1 lumberjack-1.0.2/lumberjack/NEWS | 14 lumberjack-1.0.2/lumberjack/R/cellwise.R | 49 +- lumberjack-1.0.2/lumberjack/R/expression_logger.R | 63 +- lumberjack-1.0.2/lumberjack/R/filedump.R | 45 + lumberjack-1.0.2/lumberjack/R/lumberjack.R | 234 +++++++--- lumberjack-1.0.2/lumberjack/R/run.R |only lumberjack-1.0.2/lumberjack/R/simple.R | 25 - lumberjack-1.0.2/lumberjack/README.md |only lumberjack-1.0.2/lumberjack/build/vignette.rds |binary lumberjack-1.0.2/lumberjack/inst/doc/using_lumberjack.R |only lumberjack-1.0.2/lumberjack/inst/doc/using_lumberjack.Rnw |only lumberjack-1.0.2/lumberjack/inst/doc/using_lumberjack.pdf |only lumberjack-1.0.2/lumberjack/inst/tinytest |only lumberjack-1.0.2/lumberjack/man/cellwise.Rd | 41 + lumberjack-1.0.2/lumberjack/man/dump_log.Rd | 36 + lumberjack-1.0.2/lumberjack/man/expression_logger.Rd | 31 - lumberjack-1.0.2/lumberjack/man/filedump.Rd | 34 + lumberjack-1.0.2/lumberjack/man/get_log.Rd | 13 lumberjack-1.0.2/lumberjack/man/grapes-greater-than-greater-than-grapes.Rd | 11 lumberjack-1.0.2/lumberjack/man/lumberjack.Rd | 29 - lumberjack-1.0.2/lumberjack/man/run_file.Rd |only lumberjack-1.0.2/lumberjack/man/simple.Rd | 18 lumberjack-1.0.2/lumberjack/man/start_log.Rd | 45 + lumberjack-1.0.2/lumberjack/man/stop_log.Rd | 27 + lumberjack-1.0.2/lumberjack/tests/tinytest.R |only lumberjack-1.0.2/lumberjack/vignettes/datastep2.pdf |only lumberjack-1.0.2/lumberjack/vignettes/extending.html |only lumberjack-1.0.2/lumberjack/vignettes/process.R |only lumberjack-1.0.2/lumberjack/vignettes/using_lumberjack.Rnw |only 42 files changed, 571 insertions(+), 246 deletions(-)
Title: Working with Audio and Video
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with audio
and video in R. Generate high quality videos files by capturing images from the R graphics
device combined with custom audio stream. Also offers tools to convert between countless
audio / video formats, or convert images to video and vice versa. This package interfaces
directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between av versions 0.2 dated 2018-09-30 and 0.3 dated 2019-08-21
av-0.2/av/R/util.R |only av-0.2/av/man/av_encode_video.Rd |only av-0.2/av/src/util.c |only av-0.3/av/DESCRIPTION | 23 - av-0.3/av/MD5 | 36 +- av-0.3/av/NAMESPACE | 7 av-0.3/av/NEWS |only av-0.3/av/R/capture.R | 2 av-0.3/av/R/demo.R | 4 av-0.3/av/R/encode.R | 74 +++-- av-0.3/av/R/images.R |only av-0.3/av/R/info.R | 1 av-0.3/av/R/logging.R | 5 av-0.3/av/configure | 2 av-0.3/av/man/av_video_images.Rd |only av-0.3/av/man/capturing.Rd | 6 av-0.3/av/man/demo.Rd | 2 av-0.3/av/man/encoding.Rd |only av-0.3/av/man/info.Rd | 1 av-0.3/av/src/init.c | 28 +- av-0.3/av/src/video.c | 476 ++++++++++++++++++++-------------- av-0.3/av/tests/testthat/test-audio.R |only av-0.3/av/tests/testthat/test-video.R | 53 +++ 23 files changed, 453 insertions(+), 267 deletions(-)
Title: Linkage Using Diagnosis Codes
Description: Probabilistic record linkage without direct identifiers using only
diagnosis codes. Method is detailed in: Hejblum, Weber, Liao, Palmer,
Churchill, Szolovits, Murphy, Kohane & Cai (2019) <doi: 10.1038/sdata.2018.298>.
Author: Boris P Hejblum [aut, cre],
Tianxi Cai [aut]
Maintainer: Boris P Hejblum <boris.hejblum@u-bordeaux.fr>
Diff between ludic versions 0.1.6 dated 2018-01-28 and 0.1.7 dated 2019-08-21
DESCRIPTION | 27 ++++++++++++++++++--------- MD5 | 42 ++++++++++++++++++++++-------------------- NAMESPACE | 7 +++++++ NEWS.md | 7 +++++++ R/RA.R | 2 +- R/RcppExports.R | 30 +++++++++++++++--------------- R/em_winkler.R | 8 +++++--- R/ludic-package.R | 4 ++-- R/recordLink.R | 2 +- R/test_combine.R |only README.md | 42 ++++++++++++++++++++++++++++-------------- inst/CITATION | 23 ++++++++++++----------- man/RA.Rd | 2 +- man/agree_C.Rd | 3 --- man/em_winkler.Rd | 8 +++----- man/loglikC_bin.Rd | 3 --- man/ludic-package.Rd | 4 ++-- man/matchingScore_C.Rd | 2 -- man/recordLink.Rd | 9 +++++---- man/test_combine.Rd |only src/Makevars | 18 +++++++++++++----- src/Makevars.win | 14 +++++++++++++- src/RcppExports.cpp | 26 +++++++++++++------------- 23 files changed, 168 insertions(+), 115 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Aust Frederik [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Ellis Valentiner [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Noam Ross [ctb],
Peter Hickey [ctb],
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>),
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.12 dated 2019-07-11 and 0.13 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ R/gitbook.R | 4 ++-- R/html.R | 4 +++- R/word.R | 27 ++++++++++++++++++++++++--- inst/templates/gitbook.html | 5 +++-- man/bookdown-package.Rd | 1 + man/html_document2.Rd | 21 ++++++++++++++++----- 9 files changed, 63 insertions(+), 24 deletions(-)
Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control
and consistent behavior across platforms. Supports clean interruption, timeout,
background tasks, and streaming STDIN / STDOUT / STDERR over binary or text
connections. Arguments on Windows automatically get encoded and quoted to work
on different locales.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Gábor Csárdi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sys versions 3.2 dated 2019-04-23 and 3.3 dated 2019-08-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 4 ++++ R/exec.R | 3 +++ tests/testthat/test-encoding.R | 8 ++++++-- tests/testthat/test-timeout.R | 6 ++++-- 6 files changed, 26 insertions(+), 13 deletions(-)
Title: Mesh Generation and Surface Tessellation
Description: Makes the 'Qhull' library <http://www.qhull.org>
available in R, in a similar manner as in Octave and MATLAB. Qhull
computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2D, 3D, 4D, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does not
support constrained Delaunay triangulations, or mesh generation of
non-convex objects, but the package does include some R functions
that allow for this.
Author: Jean-Romain Roussel [cph, ctb] (wrote tsearch function with QuadTrees),
C. B. Barber [cph],
Kai Habel [cph, aut],
Raoul Grasman [cph, aut],
Robert B. Gramacy [cph, aut],
Pavlo Mozharovskyi [cph, aut],
David C. Sterratt [cph, aut, cre]
(<https://orcid.org/0000-0001-9092-9099>)
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between geometry versions 0.4.2 dated 2019-07-12 and 0.4.3 dated 2019-08-21
DESCRIPTION | 8 +-- MD5 | 40 ++++++++--------- NEWS | 39 ++++++++++++++++ R/convhulln.R | 14 ++---- R/delaunayn.R | 12 +---- R/halfspacen.R | 12 +---- inst/doc/qhull-eg.pdf |binary src/QuadTree.cpp | 92 +++++++++++++++++++--------------------- src/QuadTree.h | 20 ++++---- src/Rconvhulln.c | 8 +-- src/Rdelaunayn.c | 10 ++-- src/Rgeometry.c | 17 ++++--- src/Rgeometry.h | 5 +- src/Rhalfspacen.c | 8 +-- src/Rtsearch.cpp | 10 ++-- src/Rtsearchn.c | 5 +- src/geometry_init.c | 12 ++--- tests/testthat/test-convhulln.R | 3 - tests/testthat/test-delaunayn.R | 2 tests/testthat/test-tsearch.R | 41 +++++++++++++++++ tests/testthat/test-tsearchn.R | 2 21 files changed, 218 insertions(+), 142 deletions(-)
Title: Geographical Detectors
Description: Geographical detectors for measuring spatial stratified heterogeneity,
as described in Jinfeng Wang (2010) <doi:10.1080/13658810802443457> and
Jinfeng Wang (2016) <doi:10.1016/j.ecolind.2016.02.052>. Includes the
optimal discretization of continuous data, four primary functions of
geographical detectors, comparison of size effects of spatial unit and
the visualizations of results. The descriptions of the package, methods
and case datasets refer to the citation information below.
Author: Yongze Song [aut, cre] (<https://orcid.org/0000-0003-3420-9622>)
Maintainer: Yongze Song <yongze.song@postgrad.curtin.edu.au>
Diff between GD versions 1.6 dated 2018-07-02 and 1.7 dated 2019-08-21
GD-1.6/GD/R/citv.R |only GD-1.6/GD/R/stra.R |only GD-1.6/GD/R/stra2v.R |only GD-1.6/GD/man/citv.Rd |only GD-1.6/GD/man/stra.Rd |only GD-1.6/GD/man/stra2v.Rd |only GD-1.7/GD/DESCRIPTION | 10 - GD-1.7/GD/INDEX | 3 GD-1.7/GD/MD5 | 60 +++++------ GD-1.7/GD/NAMESPACE | 40 ++----- GD-1.7/GD/R/disc.R | 129 +++++++++++++++++-------- GD-1.7/GD/R/gd.R | 126 ++++++++++++------------ GD-1.7/GD/R/gdeco.R | 126 +++++++++++------------- GD-1.7/GD/R/gdinteract.R | 139 +++++++++++++++------------ GD-1.7/GD/R/gdm.R | 109 ++++++++------------- GD-1.7/GD/R/gdrisk.R | 184 ++++++++++++++++-------------------- GD-1.7/GD/R/optidisc.R | 228 ++++++++++++++++++++++----------------------- GD-1.7/GD/R/riskmean.R | 97 +++++++------------ GD-1.7/GD/R/sesu.R | 80 +++++++-------- GD-1.7/GD/data/ndvi_10.rda |binary GD-1.7/GD/data/ndvi_20.rda |binary GD-1.7/GD/data/ndvi_30.rda |binary GD-1.7/GD/data/ndvi_40.rda |binary GD-1.7/GD/data/ndvi_5.rda |binary GD-1.7/GD/data/ndvi_50.rda |binary GD-1.7/GD/data/road_GD.rda |binary GD-1.7/GD/inst/doc/GD.R | 73 ++++++-------- GD-1.7/GD/inst/doc/GD.Rmd | 73 ++++++-------- GD-1.7/GD/inst/doc/GD.html | 109 +++++++++------------ GD-1.7/GD/man/gd.Rd | 13 +- GD-1.7/GD/man/gdm.Rd | 15 -- GD-1.7/GD/man/optidisc.Rd | 13 +- GD-1.7/GD/man/sesu.Rd | 17 --- GD-1.7/GD/vignettes/GD.Rmd | 73 ++++++-------- 34 files changed, 816 insertions(+), 901 deletions(-)
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureAuth versions 1.1.1 dated 2019-06-07 and 1.2.0 dated 2019-08-21
AzureAuth-1.1.1/AzureAuth/man/decode_jwt.Rd |only AzureAuth-1.1.1/AzureAuth/tests/testthat/test01_v1_token.R |only AzureAuth-1.1.1/AzureAuth/tests/testthat/test02_v2_token.R |only AzureAuth-1.2.0/AzureAuth/DESCRIPTION | 8 AzureAuth-1.2.0/AzureAuth/MD5 | 55 +- AzureAuth-1.2.0/AzureAuth/NAMESPACE | 17 AzureAuth-1.2.0/AzureAuth/NEWS.md | 10 AzureAuth-1.2.0/AzureAuth/R/AzureToken.R | 202 +++------- AzureAuth-1.2.0/AzureAuth/R/cert_creds.R | 4 AzureAuth-1.2.0/AzureAuth/R/classes.R |only AzureAuth-1.2.0/AzureAuth/R/flow_init.R |only AzureAuth-1.2.0/AzureAuth/R/format.R | 2 AzureAuth-1.2.0/AzureAuth/R/initfuncs.R | 94 ---- AzureAuth-1.2.0/AzureAuth/R/jwt.R |only AzureAuth-1.2.0/AzureAuth/R/managed_token.R | 7 AzureAuth-1.2.0/AzureAuth/R/normalize.R | 16 AzureAuth-1.2.0/AzureAuth/R/token.R | 175 ++++---- AzureAuth-1.2.0/AzureAuth/R/utils.R | 128 ++---- AzureAuth-1.2.0/AzureAuth/README.md | 31 + AzureAuth-1.2.0/AzureAuth/build/vignette.rds |binary AzureAuth-1.2.0/AzureAuth/inst/doc/shiny.Rmd |only AzureAuth-1.2.0/AzureAuth/inst/doc/shiny.html |only AzureAuth-1.2.0/AzureAuth/inst/doc/token.Rmd | 18 AzureAuth-1.2.0/AzureAuth/inst/doc/token.html | 30 + AzureAuth-1.2.0/AzureAuth/man/AzureToken.Rd | 26 - AzureAuth-1.2.0/AzureAuth/man/authorization.Rd |only AzureAuth-1.2.0/AzureAuth/man/cert_assertion.Rd | 2 AzureAuth-1.2.0/AzureAuth/man/figures |only AzureAuth-1.2.0/AzureAuth/man/get_azure_token.Rd | 70 ++- AzureAuth-1.2.0/AzureAuth/man/jwt.Rd |only AzureAuth-1.2.0/AzureAuth/tests/testthat/test02_jwt.R |only AzureAuth-1.2.0/AzureAuth/tests/testthat/test10_v1_token.R |only AzureAuth-1.2.0/AzureAuth/tests/testthat/test11_v1_token_misc.R |only AzureAuth-1.2.0/AzureAuth/tests/testthat/test20_v2_token.R |only AzureAuth-1.2.0/AzureAuth/tests/testthat/test21_v2_token_misc.R |only AzureAuth-1.2.0/AzureAuth/vignettes/shiny.Rmd |only AzureAuth-1.2.0/AzureAuth/vignettes/token.Rmd | 18 37 files changed, 459 insertions(+), 454 deletions(-)
Title: Simple Dengue Test and Vaccinate Cost Thresholds
Description: Provides the mathematical model described by "Serostatus Testing & Dengue Vaccine Cost-Benefit Thresholds"
in <doi:10.1098/rsif.2019.0234>. Using the functions in the package,
that analysis can be repeated using sample life histories, either synthesized from local seroprevalence data
using other functions in this package (as in the manuscript) or from some other source.
The package provides a vignette which walks through the analysis in the publication, as well as a function
to generate a project skeleton for such an analysis.
Author: Carl A. B. Pearson [aut, cre] (<https://orcid.org/0000-0003-0701-7860>),
Kaja M. Abbas [aut] (<https://orcid.org/0000-0003-0563-1576>),
Samuel Clifford [aut] (<https://orcid.org/0000-0002-3774-3882>),
Stefan Flasche [aut] (<https://orcid.org/0000-0002-5808-2606>),
Thomas J. Hladish [aut] (<https://orcid.org/0000-0003-1819-6235>)
Maintainer: Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>
Diff between denvax versions 0.1.0 dated 2019-07-19 and 0.1.1 dated 2019-08-21
DESCRIPTION | 25 ++++++++++++++++++------- MD5 | 20 ++++++++++---------- R/main.R | 4 ++-- inst/doc/published-analysis.Rmd | 2 +- inst/doc/published-analysis.html | 2 +- inst/extdata/pub/Makefile | 8 ++++---- inst/extdata/pub/Rplots.pdf |binary inst/extdata/pub/fig-ntests.R | 14 +++++++++++++- man/denvax.Rd | 2 +- man/nPxA.Rd | 2 +- vignettes/published-analysis.Rmd | 2 +- 11 files changed, 52 insertions(+), 29 deletions(-)
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] (billboard library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.2.6 dated 2019-05-07 and 0.2.7 dated 2019-08-21
billboarder-0.2.6/billboarder/inst/htmlwidgets/lib/billboard-1.6 |only billboarder-0.2.6/billboarder/inst/htmlwidgets/lib/billboard-1.7 |only billboarder-0.2.6/billboarder/inst/htmlwidgets/lib/billboard-1.8 |only billboarder-0.2.7/billboarder/DESCRIPTION | 6 billboarder-0.2.7/billboarder/MD5 | 64 +- billboarder-0.2.7/billboarder/NAMESPACE | 1 billboarder-0.2.7/billboarder/NEWS.md | 12 billboarder-0.2.7/billboarder/R/bauge.R | 11 billboarder-0.2.7/billboarder/R/bb_helpers.R | 133 +--- billboarder-0.2.7/billboarder/R/bb_utils.R | 15 billboarder-0.2.7/billboarder/R/billboarder-package.R | 6 billboarder-0.2.7/billboarder/R/billboarder.R | 43 - billboarder-0.2.7/billboarder/R/theme.R |only billboarder-0.2.7/billboarder/build/vignette.rds |binary billboarder-0.2.7/billboarder/inst/doc/billboarder-intro.html | 283 +++++----- billboarder-0.2.7/billboarder/inst/doc/billboarder-mapping.html | 114 ++-- billboarder-0.2.7/billboarder/inst/doc/billboarder-options.html | 154 ++--- billboarder-0.2.7/billboarder/inst/doc/billboarder.R | 3 billboarder-0.2.7/billboarder/inst/doc/billboarder.Rmd | 3 billboarder-0.2.7/billboarder/inst/doc/billboarder.html | 98 +-- billboarder-0.2.7/billboarder/inst/htmlwidgets/bauge.yaml | 4 billboarder-0.2.7/billboarder/inst/htmlwidgets/billboarder.js | 19 billboarder-0.2.7/billboarder/inst/htmlwidgets/billboarder.yaml | 4 billboarder-0.2.7/billboarder/inst/htmlwidgets/lib/billboard-1.10 |only billboarder-0.2.7/billboarder/inst/htmlwidgets/lib/billboard-1.9 |only billboarder-0.2.7/billboarder/man/bb_bubble.Rd | 15 billboarder-0.2.7/billboarder/man/bb_scatterplot.Rd | 9 billboarder-0.2.7/billboarder/man/billboarder-exports.Rd | 1 billboarder-0.2.7/billboarder/man/set_theme.Rd | 2 billboarder-0.2.7/billboarder/vignettes/billboarder.Rmd | 3 30 files changed, 464 insertions(+), 539 deletions(-)
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Daijiang Li [ctb],
Xianying Tan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.8 dated 2019-06-25 and 0.9 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/paths.R | 40 ++++++++++++++++++++++++++++++++++++++++ R/revcheck.R | 2 +- build/vignette.rds |binary inst/doc/xfun.html | 27 +++++++-------------------- man/rename_seq.Rd |only 9 files changed, 66 insertions(+), 31 deletions(-)
Title: Utility Functions for Developing Web Applications
Description: Parses http request data in application/json, multipart/form-data,
or application/x-www-form-urlencoded format. Includes example of hosting
and parsing html form data in R using either 'httpuv' or 'Rhttpd'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between webutils versions 0.6 dated 2017-06-23 and 1.0 dated 2019-08-21
DESCRIPTION | 15 ++++++++------- MD5 | 12 ++++++------ NEWS | 5 +++++ R/get_boundary.R | 4 ++-- man/demo_httpuv.Rd | 1 + man/demo_rhttpd.Rd | 1 + tests/testthat/test-echo.R | 12 ++++++++---- 7 files changed, 31 insertions(+), 19 deletions(-)
Title: Uniform Manifold Approximation and Projection
Description: Uniform manifold approximation and projection is a technique
for dimension reduction. The algorithm was described by McInnes and
Healy (2018) in <arXiv:1802.03426>. This package provides an interface
for two implementations. One is written from scratch, including components
for nearest-neighbor search and for embedding. The second implementation
is a wrapper for 'python' package 'umap-learn' (requires separate
installation, see vignette for more details).
Author: Tomasz Konopka [aut, cre]
Maintainer: Tomasz Konopka <tokonopka@gmail.com>
Diff between umap versions 0.2.3 dated 2019-08-19 and 0.2.3.1 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/doc/umap.html | 4 ++-- inst/doc/umap_learn.html | 2 +- tests/testthat/synthetic.R | 3 +-- tests/testthat/test_naive.R | 43 +++++++++++++++++++++++++++---------------- 6 files changed, 39 insertions(+), 29 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and
multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb],
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Niels Lohmann [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kamiński [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>
Diff between gdalcubes versions 0.2.0 dated 2019-08-08 and 0.2.1 dated 2019-08-21
DESCRIPTION | 8 MD5 | 19 - NEWS.md | 7 inst/doc/MODIS.html | 355 +++++++++++++++++++------ inst/formats/PlanetScope_3B_AnalyticMS_SR.json |only src/gdalcubes/src/build_info.h | 4 src/gdalcubes/src/cube.cpp | 10 src/gdalcubes/src/cube.h | 16 - src/gdalcubes/src/image_collection_cube.cpp | 58 +--- src/gdalcubes/src/image_collection_ops.cpp | 1 src/gdalcubes/src/progress.h | 2 11 files changed, 333 insertions(+), 147 deletions(-)
Title: Spatial Analysis of Field Trials Experiments using Geostatistics
and Spatial Autoregressive Model
Description: Perform analysis of variance when the experimental units are spatially correlated. There are two methods to deal with spatial dependence: Spatial autoregressive models (see Rossoni, D. F., & Lima, R. R. (2019) <doi:10.28951/rbb.v37i2.388>) and geostatistics (see Pontes, J. M., & Oliveira, M. S. D. (2004) <doi:10.1590/S1413-70542004000100018>). For both methods, there are three multicomparison procedure available: Tukey, multivariate T, and Scott-Knott.
Author: Lucas Roberto de Castro, Renato Ribeiro de Lima, Diogo Francisco Rossoni, Cristina Henriques Nogueira
Maintainer: Lucas Roberto de Castro <lrcastro@estudante.ufla.br>
Diff between spANOVA versions 0.99.0 dated 2019-07-02 and 0.99.1 dated 2019-08-21
DESCRIPTION | 12 MD5 | 43 +-- NAMESPACE | 4 NEWS.md |only R/aovGeo.R | 20 - R/aovSar.crd.R | 9 R/aovSar.gen.R | 506 ++++++++++++++++++------------------ R/aovSar.rcbd.R | 564 ++++++++++++++++++++--------------------- R/spANOVAapp.R | 2 R/spMVT.R | 2 R/spScottKnott.R | 2 R/spTukey.R | 41 +- README.md | 12 inst/shiny/spANOVAapp/global.R | 2 inst/shiny/spANOVAapp/server.R | 4 inst/shiny/spANOVAapp/ui.R | 4 man/aovGeo.Rd | 4 man/aovSar.crd.Rd | 9 man/aovSar.gen.Rd | 4 man/aovSar.rcbd.Rd | 4 man/spMVT.Rd | 2 man/spScottKnott.Rd | 2 man/spTukey.Rd | 9 23 files changed, 632 insertions(+), 629 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd
and lz4 code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for Alt-Rep
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.17.3 dated 2019-07-08 and 0.18.3 dated 2019-08-21
qs-0.17.3/qs/src/qs_inspect.h |only qs-0.18.3/qs/ChangeLog | 16 qs-0.18.3/qs/DESCRIPTION | 13 qs-0.18.3/qs/LICENSE | 844 +++++---------------------- qs-0.18.3/qs/MD5 | 65 +- qs-0.18.3/qs/NAMESPACE | 25 qs-0.18.3/qs/R/RcppExports.R | 74 ++ qs-0.18.3/qs/R/help_files.R | 151 ++++ qs-0.18.3/qs/R/zzz.R |only qs-0.18.3/qs/README.md | 13 qs-0.18.3/qs/build/vignette.rds |binary qs-0.18.3/qs/configure | 14 qs-0.18.3/qs/data/starnames.rda |binary qs-0.18.3/qs/inst/doc/vignette.R | 8 qs-0.18.3/qs/inst/doc/vignette.html | 86 +- qs-0.18.3/qs/inst/doc/vignette.rmd | 10 qs-0.18.3/qs/man/convertToAlt.Rd | 3 qs-0.18.3/qs/man/qdeserialize.Rd |only qs-0.18.3/qs/man/qread.Rd | 4 qs-0.18.3/qs/man/qread_fd.Rd |only qs-0.18.3/qs/man/qread_handle.Rd |only qs-0.18.3/qs/man/qread_ptr.Rd |only qs-0.18.3/qs/man/qsave.Rd | 7 qs-0.18.3/qs/man/qsave_fd.Rd |only qs-0.18.3/qs/man/qsave_handle.Rd |only qs-0.18.3/qs/man/qserialize.Rd |only qs-0.18.3/qs/src/Makevars.in | 2 qs-0.18.3/qs/src/Makevars.win | 2 qs-0.18.3/qs/src/RcppExports.cpp | 254 +++++++- qs-0.18.3/qs/src/qs_common.h | 668 ++++++++++++++++++--- qs-0.18.3/qs/src/qs_deserialization.h | 40 - qs-0.18.3/qs/src/qs_deserialization_stream.h | 350 ++++++++--- qs-0.18.3/qs/src/qs_functions.cpp | 625 ++++++++++++++++--- qs-0.18.3/qs/src/qs_mt_deserialization.h | 17 qs-0.18.3/qs/src/qs_mt_serialization.h | 14 qs-0.18.3/qs/src/qs_serialization.h | 24 qs-0.18.3/qs/src/qs_serialization_stream.h | 66 +- qs-0.18.3/qs/vignettes/vignette.rmd | 10 38 files changed, 2246 insertions(+), 1159 deletions(-)
Title: Mixed Proportional Hazard Competing Risk Model
Description: Estimation of piecewise constant mixed proportional hazard competing risk model with NPMLE.
The model is described in S. Gaure et al. (2007) <doi:10.1016/j.jeconom.2007.01.015>,
J. Heckman and B. Singer (1984) <doi:10.2307/1911491>, and
B.G. Lindsay (1983) <doi:10.1214/aos/1176346059>.
Author: Simen Gaure [aut, cre] (<https://orcid.org/0000-0001-7251-8747>)
Maintainer: Simen Gaure <simen@gaure.no>
Diff between durmod versions 1.1-1 dated 2019-07-25 and 1.1-2 dated 2019-08-21
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 + R/duration.R | 29 +++++++++++++++++------------ R/durmod-package.R | 32 +++++++++++++++++++++++++++++++- R/utils.R | 19 +++++++++++++++++++ inst/NEWS.Rd | 8 ++++++++ inst/doc/whatmph.Rnw | 3 +-- inst/doc/whatmph.pdf |binary man/durmod-package.Rd | 31 ++++++++++++++++++++++++++++++- man/mphdist.Rd | 5 +++++ src/cfunctions.cpp | 32 +++++++++++++++++++++++++------- tests/sometests.Rout.save | 10 +++++----- vignettes/whatmph.Rnw | 3 +-- 14 files changed, 160 insertions(+), 47 deletions(-)
Title: Flexible Univariate Count Models Based on Renewal Processes
Description: Flexible univariate count models based on renewal
processes. The models may include covariates and can be specified
with familiar formula syntax as in glm() and package 'flexsurv'.
The methodology is described in a forthcoming paper in the Journal
of Statistical Software <10.18637/jss.v090.i13> (included as
vignette 'Countr_guide' in the package).
Author: Tarak Kharrat [aut, cre],
Georgi N. Boshnakov [aut]
Maintainer: Tarak Kharrat <Tarak.Kharrat@liverpool.ac.uk>
Diff between Countr versions 3.5.2 dated 2018-10-04 and 3.5.4 dated 2019-08-21
Countr-3.5.2/Countr/man/Countr.Rd |only Countr-3.5.4/Countr/DESCRIPTION | 18 + Countr-3.5.4/Countr/MD5 | 106 +++++------ Countr-3.5.4/Countr/NEWS.md | 17 + Countr-3.5.4/Countr/R/Countr-package.R | 23 +- Countr-3.5.4/Countr/R/coefnames.R | 4 Countr-3.5.4/Countr/R/renewal_cstr.R | 34 +++ Countr-3.5.4/Countr/R/renewal_tools.R | 41 ++-- Countr-3.5.4/Countr/README.md |only Countr-3.5.4/Countr/build/partial.rdb |binary Countr-3.5.4/Countr/build/vignette.rds |binary Countr-3.5.4/Countr/inst/CITATION |only Countr-3.5.4/Countr/inst/REFERENCES.bib | 11 + Countr-3.5.4/Countr/inst/doc/ComputationalPerformance.pdf |binary Countr-3.5.4/Countr/inst/doc/Countr_guide.pdf |binary Countr-3.5.4/Countr/inst/doc/ModelSelectionAndComparison.pdf |binary Countr-3.5.4/Countr/inst/doc/Rnw/CountrJSSArticle.bib |only Countr-3.5.4/Countr/inst/doc/Rnw/Countr_guide_paper.Rnw | 12 - Countr-3.5.4/Countr/inst/doc/VarianceCovariance.pdf |binary Countr-3.5.4/Countr/inst/doc/exampleFertility.pdf |binary Countr-3.5.4/Countr/inst/doc/exampleFootball.pdf |binary Countr-3.5.4/Countr/inst/doc/index.html | 48 ++-- Countr-3.5.4/Countr/inst/doc/org/fertility.bib | 11 + Countr-3.5.4/Countr/inst/doc/org/fertility.org | 36 ++- Countr-3.5.4/Countr/inst/doc/org/football.bib | 13 + Countr-3.5.4/Countr/inst/doc/org/football.org | 3 Countr-3.5.4/Countr/inst/doc/org/perf.bib | 13 + Countr-3.5.4/Countr/inst/doc/org/perf.org | 3 Countr-3.5.4/Countr/inst/doc/org/quine.bib | 11 + Countr-3.5.4/Countr/inst/doc/org/quine.org | 3 Countr-3.5.4/Countr/inst/doc/org/var_covar.bib | 13 + Countr-3.5.4/Countr/inst/doc/org/var_covar.org | 35 +-- Countr-3.5.4/Countr/inst/examples/example-jss.R |only Countr-3.5.4/Countr/inst/include/Countr_RcppExports.h | 28 ++ Countr-3.5.4/Countr/man/Countr-package.Rd |only Countr-3.5.4/Countr/man/dCount_conv_bi.Rd | 6 Countr-3.5.4/Countr/man/dCount_conv_loglik_bi.Rd | 13 - Countr-3.5.4/Countr/man/dCount_naive_bi.Rd | 8 Countr-3.5.4/Countr/man/dWeibullCount.Rd | 15 - Countr-3.5.4/Countr/man/dWeibullCount_mat.Rd | 9 Countr-3.5.4/Countr/man/dWeibullgammaCount.Rd | 9 Countr-3.5.4/Countr/man/evCount_conv_bi.Rd | 5 Countr-3.5.4/Countr/man/predict.renewal.Rd | 4 Countr-3.5.4/Countr/man/renewal.Rd | 1 Countr-3.5.4/Countr/man/renewalCoef.Rd | 3 Countr-3.5.4/Countr/man/renewalCount.Rd | 19 + Countr-3.5.4/Countr/man/renewal_methods.Rd | 13 - Countr-3.5.4/Countr/man/se.coef.Rd | 3 Countr-3.5.4/Countr/src/RcppExports.cpp | 56 +++++ Countr-3.5.4/Countr/tests/testthat.R | 8 Countr-3.5.4/Countr/tests/testthat/test-hess.R |only Countr-3.5.4/Countr/tests/testthat/test-issue_1.R |only Countr-3.5.4/Countr/vignettes/Countr_guide_paper.pdf |binary Countr-3.5.4/Countr/vignettes/fertility.pdf |binary Countr-3.5.4/Countr/vignettes/football.pdf |binary Countr-3.5.4/Countr/vignettes/perf.pdf |binary Countr-3.5.4/Countr/vignettes/quine.pdf |binary Countr-3.5.4/Countr/vignettes/var_covar.pdf |binary 58 files changed, 456 insertions(+), 199 deletions(-)
Title: Visualise Clusterings at Different Resolutions
Description: Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
clusterings as resolution increases.
Author: Luke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>),
Alicia Oshlack [aut] (<https://orcid.org/0000-0001-9788-5690>),
Andrea Rau [ctb],
Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>)
Maintainer: Luke Zappia <luke@lazappi.id.au>
Diff between clustree versions 0.4.0 dated 2019-04-18 and 0.4.1 dated 2019-08-21
DESCRIPTION | 12 ++-- MD5 | 24 ++++---- NEWS.md | 28 +++++++++ R/clustree.R | 5 - R/clustree_overlay.R | 11 ++- R/graph.R | 13 +++- README.md | 2 build/vignette.rds |binary inst/WORDLIST | 4 + inst/doc/clustree.Rmd | 2 inst/doc/clustree.html | 115 ++++++++++++++++++++--------------------- tests/testthat/test-clustree.R | 11 ++- vignettes/clustree.Rmd | 2 13 files changed, 135 insertions(+), 94 deletions(-)
Title: Split Plot
Description: Automates common plotting tasks to ease data exploration.
Makes density plots (potentially overlaid on histograms),
scatter plots with prediction lines, or bar or line plots with error bars.
For each type, y, or x and y variables can be plotted at levels of other variables,
all with minimal specification.
Author: Micah Iserman
Maintainer: Micah Iserman <micah.iserman@ttu.edu>
Diff between splot versions 0.4.2 dated 2019-04-28 and 0.5.0 dated 2019-08-21
DESCRIPTION | 6 MD5 | 15 - NAMESPACE | 2 R/splot.R | 532 ++++++++++++++++++++++++++++--------------------- R/utils.R | 129 +++++++---- inst/NEWS.Rd | 32 ++ man/splot.Rd | 76 +++---- man/splot.color.Rd | 5 man/splot.colormean.Rd |only 9 files changed, 476 insertions(+), 321 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Barret Schloerke [ctb],
Christophe Dervieux [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 1.14 dated 2019-07-12 and 1.15 dated 2019-08-21
DESCRIPTION | 8 +++++--- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/pdf_document.R | 25 +++++++++++++------------ R/render_site.R | 10 ++++++++-- R/util.R | 3 ++- inst/rmd/h/default.html | 1 - inst/rmd/h/navigation-1.1/codefolding.js | 2 +- 8 files changed, 45 insertions(+), 27 deletions(-)
Title: Amazon Web Services Storage APIs
Description: Interface to Amazon Web Services storage APIs,
including 'Simple Storage Service' ('S3') and more
<https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.storage versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 13 +++++++------ MD5 | 18 +++++++++--------- R/backup_service.R | 2 +- R/dlm_service.R | 2 +- R/efs_service.R | 2 +- R/fsx_service.R | 2 +- R/glacier_service.R | 2 +- R/s3_service.R | 2 +- R/s3control_service.R | 2 +- R/storagegateway_service.R | 2 +- 10 files changed, 24 insertions(+), 23 deletions(-)
Title: Amazon Web Services Security, Identity, & Compliance APIs
Description: Interface to Amazon Web Services security,
identity, and compliance APIs, including the 'Identity & Access
Management' ('IAM') service for managing access to services and
resources, and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.security.identity versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 16 +++--- MD5 | 58 ++++++++++++------------ R/acm_service.R | 4 - R/acmpca_service.R | 2 R/clouddirectory_service.R | 2 R/cloudhsm_service.R | 2 R/cloudhsmv2_service.R | 2 R/cognitoidentity_service.R | 2 R/cognitoidentityprovider_operations.R | 6 +- R/cognitoidentityprovider_service.R | 2 R/cognitosync_service.R | 2 R/directoryservice_service.R | 2 R/fms_service.R | 2 R/guardduty_service.R | 2 R/iam_service.R | 2 R/inspector_service.R | 2 R/kms_service.R | 4 - R/macie_service.R | 2 R/ram_service.R | 2 R/secretsmanager_operations.R | 5 +- R/secretsmanager_service.R | 2 R/securityhub_service.R | 2 R/shield_service.R | 2 R/sts_service.R | 2 R/waf_service.R | 2 R/wafregional_service.R | 2 man/acm.Rd | 2 man/cognitoidentityprovider_create_user_pool.Rd | 6 +- man/kms.Rd | 2 man/secretsmanager_rotate_secret.Rd | 5 +- 30 files changed, 77 insertions(+), 71 deletions(-)
More information about paws.security.identity at CRAN
Permanent link
Title: Amazon Web Services Networking & Content Delivery APIs
Description: Interface to Amazon Web Services networking and
content delivery APIs, including 'Route 53' Domain Name System
service, 'CloudFront' content delivery, load balancing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.networking versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 14 +++++++------- MD5 | 28 ++++++++++++++-------------- R/apigateway_service.R | 2 +- R/apigatewaymanagementapi_service.R | 2 +- R/apigatewayv2_service.R | 2 +- R/appmesh_service.R | 2 +- R/cloudfront_service.R | 2 +- R/directconnect_service.R | 2 +- R/elb_service.R | 2 +- R/elbv2_service.R | 2 +- R/globalaccelerator_service.R | 2 +- R/route53_service.R | 2 +- R/route53domains_service.R | 2 +- R/route53resolver_service.R | 2 +- R/servicediscovery_service.R | 2 +- 15 files changed, 34 insertions(+), 34 deletions(-)
More information about paws.networking at CRAN
Permanent link
Title: Amazon Web Services Management & Governance APIs
Description: Interface to Amazon Web Services management and
governance APIs, including 'CloudWatch' application and infrastructure
monitoring, 'Auto Scaling' for automatically scaling resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.management versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 12 ++++---- MD5 | 48 +++++++++++++++++------------------ R/applicationautoscaling_service.R | 2 - R/applicationinsights_service.R | 2 - R/autoscaling_service.R | 2 - R/autoscalingplans_service.R | 2 - R/cloudformation_service.R | 2 - R/cloudtrail_service.R | 2 - R/cloudwatch_service.R | 2 - R/cloudwatchevents_service.R | 2 - R/cloudwatchlogs_service.R | 2 - R/configservice_service.R | 2 - R/health_service.R | 2 - R/licensemanager_service.R | 2 - R/opsworks_service.R | 2 - R/opsworkscm_service.R | 2 - R/organizations_service.R | 2 - R/pi_service.R | 2 - R/resourcegroups_service.R | 2 - R/resourcegroupstaggingapi_service.R | 2 - R/servicecatalog_service.R | 2 - R/servicequotas_service.R | 2 - R/ssm_operations.R | 2 - R/ssm_service.R | 2 - R/support_service.R | 2 - 25 files changed, 53 insertions(+), 53 deletions(-)
More information about paws.management at CRAN
Permanent link
Title: Amazon Web Services Machine Learning APIs
Description: Interface to Amazon Web Services machine learning
APIs, including 'SageMaker' managed machine learning service, natural
language processing, speech recognition, translation, and more
<https://aws.amazon.com/machine-learning/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.machine.learning versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 12 ++++++------ MD5 | 32 ++++++++++++++++---------------- R/comprehend_service.R | 2 +- R/comprehendmedical_service.R | 2 +- R/lexmodelbuildingservice_service.R | 2 +- R/lexruntimeservice_service.R | 2 +- R/machinelearning_service.R | 2 +- R/personalize_service.R | 2 +- R/personalizeevents_service.R | 2 +- R/personalizeruntime_service.R | 2 +- R/polly_service.R | 2 +- R/rekognition_service.R | 2 +- R/sagemaker_service.R | 2 +- R/sagemakerruntime_service.R | 2 +- R/textract_service.R | 2 +- R/transcribeservice_service.R | 2 +- R/translate_service.R | 2 +- 17 files changed, 37 insertions(+), 37 deletions(-)
More information about paws.machine.learning at CRAN
Permanent link
Title: Amazon Web Services Database APIs
Description: Interface to Amazon Web Services database APIs,
including 'Relational Database Service' ('RDS'), 'DynamoDB' 'NoSQL'
database, and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.database versions 0.1.3 dated 2019-07-27 and 0.1.4 dated 2019-08-21
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- R/dax_service.R | 2 +- R/dynamodb_service.R | 2 +- R/dynamodbstreams_service.R | 2 +- R/elasticache_service.R | 2 +- R/neptune_service.R | 2 +- R/rds_service.R | 2 +- R/rdsdataservice_service.R | 2 +- R/redshift_service.R | 2 +- R/simpledb_service.R | 2 +- 11 files changed, 26 insertions(+), 26 deletions(-)
Title: Amazon Web Services Customer Engagement APIs
Description: Interface to Amazon Web Services customer
engagement APIs, including 'Simple Email Service', 'Connect' contact
center service, and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.customer.engagement versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-21
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ R/connect_service.R | 2 +- R/pinpoint_service.R | 2 +- R/pinpointemail_service.R | 2 +- R/pinpointsmsvoice_service.R | 2 +- R/ses_service.R | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
More information about paws.customer.engagement at CRAN
Permanent link
Title: Amazon Web Services Cost Management APIs
Description: Interface to Amazon Web Services cost management
APIs, including cost and usage reports, budgets, pricing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.cost.management versions 0.1.3 dated 2019-07-27 and 0.1.4 dated 2019-08-21
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- R/budgets_service.R | 2 +- R/costandusagereportservice_service.R | 2 +- R/costexplorer_service.R | 2 +- R/marketplacecommerceanalytics_service.R | 2 +- R/marketplaceentitlementservice_service.R | 2 +- R/marketplacemetering_service.R | 2 +- R/pricing_service.R | 2 +- 9 files changed, 21 insertions(+), 21 deletions(-)
More information about paws.cost.management at CRAN
Permanent link
Title: Amazon Web Services Compute APIs
Description: Interface to Amazon Web Services compute APIs,
including 'Elastic Compute Cloud' ('EC2'), 'Lambda'
functions-as-a-service, containers, batch processing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.compute versions 0.1.3 dated 2019-07-27 and 0.1.4 dated 2019-08-21
DESCRIPTION | 15 ++++++++------- MD5 | 22 +++++++++++----------- R/batch_service.R | 2 +- R/ec2_service.R | 2 +- R/ec2instanceconnect_service.R | 2 +- R/ecr_service.R | 2 +- R/ecs_service.R | 2 +- R/eks_service.R | 2 +- R/elasticbeanstalk_service.R | 2 +- R/lambda_service.R | 2 +- R/lightsail_service.R | 2 +- R/serverlessapplicationrepository_service.R | 2 +- 12 files changed, 29 insertions(+), 28 deletions(-)
Title: Amazon Web Services Application Integration APIs
Description: Interface to Amazon Web Services application
integration APIs, including 'Simple Queue Service' ('SQS') message
queue, 'Simple Notification Service' ('SNS') publish/subscribe
messaging, and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.application.integration versions 0.1.3 dated 2019-07-27 and 0.1.4 dated 2019-08-21
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- R/eventbridge_service.R | 2 +- R/mq_service.R | 2 +- R/sfn_service.R | 2 +- R/sns_service.R | 2 +- R/sqs_service.R | 2 +- R/swf_service.R | 2 +- 8 files changed, 21 insertions(+), 21 deletions(-)
More information about paws.application.integration at CRAN
Permanent link
Title: Amazon Web Services Analytics APIs
Description: Interface to Amazon Web Services analytics APIs,
including 'Elastic MapReduce' 'Hadoop' and 'Spark' big data service,
'Elasticsearch' search engine, and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.analytics versions 0.1.3 dated 2019-07-27 and 0.1.4 dated 2019-08-21
DESCRIPTION | 12 ++++++------ MD5 | 30 +++++++++++++++--------------- R/athena_service.R | 2 +- R/cloudsearch_service.R | 2 +- R/cloudsearchdomain_service.R | 2 +- R/datapipeline_service.R | 2 +- R/elasticsearchservice_service.R | 2 +- R/emr_service.R | 2 +- R/firehose_service.R | 2 +- R/glue_service.R | 2 +- R/kafka_service.R | 2 +- R/kinesis_service.R | 2 +- R/kinesisanalytics_service.R | 2 +- R/kinesisanalyticsv2_service.R | 2 +- R/mturk_service.R | 2 +- R/quicksight_service.R | 2 +- 16 files changed, 35 insertions(+), 35 deletions(-)
More information about paws.analytics at CRAN
Permanent link
Title: Utilizes the Black-Scholes Option Pricing Model to Perform
Strategic Option Analysis and Plot Option Strategies
Description: Utilizes the Black-Scholes-Merton option pricing model to
calculate key option analytics and perform graphical analysis of various option strategies.
Provides functions to calculate the option premium and option
greeks of European-style options.
Author: John T. Buynak [aut, cre]
Maintainer: John T. Buynak <jbuynak94@gmail.com>
Diff between optionstrat versions 1.3.0 dated 2019-06-20 and 1.4.0 dated 2019-08-21
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/optionstrat.R | 32 +++++++++++++++++++------------- inst/doc/optionstrat_vignette.html | 4 ++-- man/plotbearcall.Rd | 4 +++- man/plotbearput.Rd | 4 +++- man/plotbullcall.Rd | 4 +++- man/plotbullput.Rd | 4 +++- man/plotdv.Rd | 4 +++- man/plotvertical.Rd | 4 +++- 10 files changed, 52 insertions(+), 34 deletions(-)
Title: Test Set for Differential Equations
Description: Solvers and test set for stiff and non-stiff differential equations, and
differential algebraic equations.
'Mazzia, F., Cash, J.R. and K. Soetaert, 2012. DOI: 10.1016/j.cam.2012.03.014'.
Author: Karline Soetaert [aut, cre],
Jeff Cash [aut],
Francesca Mazzia [aut],
LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between deTestSet versions 1.1.5 dated 2017-01-19 and 1.1.6 dated 2019-08-21
DESCRIPTION | 21 MD5 | 79 NAMESPACE | 3 R/bimd.R | 4 R/forcings.R | 39 R/gam.R | 530 +- R/mebdfi.R | 4 build/vignette.rds |binary inst/CITATION |only inst/doc/deTestSet.pdf |binary man/deTestSet.Rd | 155 man/ex_E5.Rd | 155 man/ex_andrews.Rd | 2 man/ex_beam.Rd | 2 man/ex_caraxis.Rd | 2 man/ex_crank.Rd | 2 man/ex_emep.Rd | 2 man/ex_fekete.Rd | 2 man/ex_hires.Rd | 2 man/ex_nand.Rd | 3 man/ex_orego.Rd | 153 man/ex_pleiades.Rd | 2 man/ex_pollution.Rd | 2 man/ex_reference.Rd | 68 man/ex_ring.Rd | 2 man/ex_rober.Rd | 161 man/ex_transistor.Rd | 3 man/ex_tube.Rd | 3 man/ex_twobit.Rd | 3 man/ex_vdpol.Rd | 159 man/ex_wheelset.Rd | 2 src/call_dopri.c | 71 src/call_gam.c | 74 src/call_mebdfi.c | 66 src/cashkarp.f | 4 src/de.h | 6 src/deTestSetMethods.c |only src/de_utils.c | 122 src/errmsg.f | 113 src/forcings.c | 8 src/gamd.f90 |11414 ++++++++++++++++++++++++------------------------- src/rprintf.c |only 42 files changed, 6674 insertions(+), 6769 deletions(-)
Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R.
These helpers include 'htmltools::htmlDependency' functions, hierarchy
builders, and conversion tools for 'partykit', 'igraph,' 'table',
and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.8.6 dated 2019-07-23 and 0.8.7 dated 2019-08-21
DESCRIPTION | 10 +++---- MD5 | 16 ++++++------ NEWS.md | 5 +++ R/dependencies.R | 4 +-- R/hierarchy.R | 55 +++++++++++++++++++++++++++++------------- inst/www/d3/v5/CHANGES.md | 16 ++++++------ inst/www/d3/v5/dist/d3.min.js | 4 +-- tests/testthat/test_deps.R | 1 tests/testthat/test_v8.R | 2 - 9 files changed, 71 insertions(+), 42 deletions(-)
Title: 0-1 Test for Chaos
Description: Computes and visualize the results of the 0-1 test for chaos proposed
by Gottwald and Melbourne (2004) <DOI:10.1137/080718851>. The algorithm is
available in parallel for the independent values of parameter c. Additionally,
fast RQA is added to distinguish chaos from noise.
Author: Tomas Martinovic [aut, cre]
Maintainer: Tomas Martinovic <tomas.martinovic@vsb.cz>
Diff between Chaos01 versions 1.2.0 dated 2019-08-02 and 1.2.1 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 7 +++++++ R/rqa_diag.R | 2 +- 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Longitudinal Cascade
Description: Creates a series of set of graphics and statistics related to the longitudinal cascade, all included in a single object. The longitudinal cascade inputs longitudinal data to identify gaps in the HIV and related cascades by observing differences using time to event and survival methods. The stage definitions are set by the user, with default standard options. Outputs include graphics, datasets, and formal statistical tests.
Author: Noah Haber [aut, cre]
Maintainer: Noah Haber <noahhaber@gmail.com>
Diff between longitudinalcascade versions 0.3.1.1 dated 2019-06-13 and 0.3.2.1 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/longitudinalcascade.R | 15 +++++++-------- 3 files changed, 12 insertions(+), 13 deletions(-)
More information about longitudinalcascade at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-29 0.4
2014-02-11 0.3.1
2013-05-11 0.3
2012-03-15 0.2.3
2011-11-02 0.2.2
More information about partitionBEFsp at CRAN
Permanent link
Title: Heuristics Including Take the Best and Unit-Weight Linear
Description: Implements various heuristics like Take The Best and
unit-weight linear, which do two-alternative choice: which of
two objects will have a higher criterion? Also offers functions
to assess performance, e.g. percent correct across all row pairs
in a data set and finding row pairs where models disagree.
New models can be added by implementing a fit and predict function--
see vignette.
Author: Jean Whitmore [aut, cre],
Daniel Barkoczi [aut]
Maintainer: Jean Whitmore <jeanimal@gmail.com>
Diff between heuristica versions 1.0.1 dated 2016-07-17 and 1.0.2 dated 2019-08-21
DESCRIPTION | 12 LICENSE | 2 MD5 | 146 ++++---- NEWS.md | 5 R/heuristics.R | 36 ++ README.md | 2 build/vignette.rds |binary inst/doc/README.Rmd | 2 inst/doc/README.html | 375 +++++++++++++++++---- inst/doc/confusion-matrix.Rmd | 2 inst/doc/confusion-matrix.html | 429 ++++++++++++++++++------ inst/doc/cross-validation.R | 15 inst/doc/cross-validation.Rmd | 18 - inst/doc/cross-validation.html | 475 ++++++++++++++++++++------ inst/doc/how-to-make-heuristic.html | 479 ++++++++++++++++++++------- inst/doc/reproducing-results.R | 61 +++ inst/doc/reproducing-results.Rmd | 80 ++++ inst/doc/reproducing-results.html | 417 ++++++++++++++++++++--- man/accuracyFromConfusionMatrix3x3.Rd | 1 man/city_population.Rd | 1 man/city_population_original.Rd | 1 man/collapseConfusionMatrix3x3To2x2.Rd | 1 man/conditionalCueValidityComplete.Rd | 1 man/confusionMatrixFor_Neg1_0_1.Rd | 1 man/correctGreater.Rd | 1 man/createFunction.Rd | 1 man/createFunction.heuristics.Rd | 1 man/cueAccuracy.Rd | 1 man/cueValidity.Rd | 1 man/cueValidityAppliedToColumns.Rd | 1 man/cueValidityComplete.Rd | 5 man/distributeGuessAsExpectedValue.Rd | 1 man/heuristics.Rd | 1 man/heuristicsList.Rd | 1 man/heuristicsProb.Rd | 1 man/highschool_dropout.Rd | 1 man/lmWrapper.Rd | 4 man/logRegModel.Rd | 1 man/minModel.Rd | 1 man/oneRow.Rd | 1 man/pairMatrix.Rd | 1 man/percentCorrect.Rd | 1 man/percentCorrectList.Rd | 1 man/percentCorrectListNonSymmetric.Rd | 1 man/percentCorrectListReturnMatrix.Rd | 1 man/predictPair.Rd | 1 man/predictPairInternal.Rd | 1 man/predictPairProb.Rd | 1 man/predictPairSummary.Rd | 1 man/predictProbInternal.Rd | 1 man/probGreater.Rd | 1 man/regInterceptModel.Rd | 1 man/regModel.Rd | 1 man/reverseRowsAndReverseColumns.Rd | 1 man/rowIndexes.Rd | 1 man/rowPairApply.Rd | 1 man/rowPairApply2Rows.Rd | 1 man/rowPairApplyList.Rd | 1 man/singleCueModel.Rd | 5 man/statsFromConfusionMatrix.Rd | 1 man/ttbGreedyModel.Rd | 1 man/ttbModel.Rd | 1 man/unitWeightModel.Rd | 5 man/validityWeightModel.Rd | 1 man/zzDocumentationStubFormulaModelParams.Rd | 4 man/zzDocumentationStubModelParams.Rd | 1 man/zzDocumentationStubReverseCues.Rd | 1 tests/testthat/test-aggregators.R | 91 ++--- tests/testthat/test-heuristics.R | 65 +++ tests/testthat/test-heuristics_benchmark.R | 11 vignettes/README.Rmd | 2 vignettes/confusion-matrix.Rmd | 2 vignettes/cross-validation.Rmd | 18 - vignettes/reproducing-results.Rmd | 80 ++++ 74 files changed, 2213 insertions(+), 679 deletions(-)
Title: Article Formats for R Markdown
Description: A suite of custom R Markdown formats and templates for
authoring journal articles and conference submissions.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
R Foundation [aut, cph],
Hadley Wickham [aut],
Journal of Statistical Software [aut, cph],
RStudio [cph],
Ramnath Vaidyanathan [aut, cph],
Association for Computing Machinery [aut, cph],
Carl Boettiger [aut, cph],
Elsevier [aut, cph],
Karl Broman [aut, cph],
Kirill Mueller [aut, cph],
Bastiaan Quast [aut, cph],
Randall Pruim [aut, cph],
Ben Marwick [aut, cph],
Charlotte Wickham [aut, cph],
Oliver Keyes [aut, cph],
Miao Yu [aut, cph],
Daniel Emaasit [aut, cph],
Thierry Onkelinx [aut, cph],
Alessandro Gasparini [aut, cph]
(<https://orcid.org/0000-0002-8319-7624>),
Marc-Andre Desautels [aut, cph],
Dominik Leutnant [aut, cph] (<https://orcid.org/0000-0003-3293-2315>),
MDPI [aut, cph],
Taylor and Francis [aut, cph],
Oğuzhan Öğreden [aut] (<https://orcid.org/0000-0002-9949-3348>),
Dalton Hance [aut],
Daniel Nüst [aut, cph] (<https://orcid.org/0000-0002-0024-5046>),
Petter Uvesten [aut, cph],
Elio Campitelli [aut, cph] (<https://orcid.org/0000-0002-7742-9230>),
John Muschelli [aut, cph] (<https://orcid.org/0000-0001-6469-1750>),
Zhian N. Kamvar [aut, cph] (<https://orcid.org/0000-0003-1458-7108>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rticles versions 0.9 dated 2019-07-12 and 0.10 dated 2019-08-21
DESCRIPTION | 12 +++++----- MD5 | 12 +++++----- NEWS.md | 5 ++++ README.md | 2 - inst/rmarkdown/templates/copernicus_article/resources/template.tex | 1 inst/rmarkdown/templates/peerj_article/resources/template.tex | 6 +++++ tests/testit/test-formats.R | 1 7 files changed, 27 insertions(+), 12 deletions(-)
Title: Normalized Power Prior Bayesian Analysis
Description: Posterior sampling in several commonly used distributions using
normalized power prior as described in
Duan, Ye and Smith (2006) <doi:10.1002/env.752> and
Ibrahim et.al. (2015) <doi:10.1002/sim.6728>.
Sampling of the power parameter is achieved via
either independence Metropolis-Hastings or random walk Metropolis-Hastings
based on transformation.
Author: Zifei Han, Tianyu Bai and Keying Ye
Maintainer: Zifei Han <hanzifei1@gmail.com>
Diff between NPP versions 0.1.0 dated 2019-07-11 and 0.2.0 dated 2019-08-21
DESCRIPTION | 6 MD5 | 15 +- NAMESPACE | 2 R/LMNPP.R |only R/NormalNPP.R | 218 +++++++++++++++--------------- R/PosteriorModeNPP.R | 331 ++++++++++++++++++++++++++++------------------ man/LMNPP.Rd |only man/ModeDeltaLMNPP.Rd |only man/ModeDeltaNormalNPP.Rd | 10 - man/NormalNPP.Rd | 7 10 files changed, 338 insertions(+), 251 deletions(-)
Title: Covariate Balancing Propensity Score
Description: Implements the covariate balancing propensity score (CBPS) proposed
by Imai and Ratkovic (2014) <DOI:10.1111/rssb.12027>. The propensity score is
estimated such that it maximizes the resulting covariate balance as well as the
prediction of treatment assignment. The method, therefore, avoids an iteration
between model fitting and balance checking. The package also implements optimal
CBPS from Fan et al. (2016) <https://imai.fas.harvard.edu/research/CBPStheory.html>,
several extensions of the CBPS beyond the cross-sectional, binary treatment setting.
They include the CBPS for longitudinal settings so that it can be used in
conjunction with marginal structural models from Imai and Ratkovic (2015)
<DOI:10.1080/01621459.2014.956872>, treatments with three- and four-valued treatment
variables, continuous-valued treatments from Fong, Hazlett, and Imai (2018)
<DOI:10.1214/17-AOAS1101>, propensity score estimation with a large number of
covariates from Ning, Peng, and Imai (2018) <arXiv:1812.08683>, and the situation
with multiple distinct binary treatments administered simultaneously. In the future
it will be extended to other settings including the generalization of experimental
and instrumental variable estimates.
Author: Christian Fong [aut, cre],
Marc Ratkovic [aut],
Kosuke Imai [aut],
Chad Hazlett [ctb],
Xiaolin Yang [ctb],
Sida Peng [ctb]
Maintainer: Christian Fong <cjfong@umich.edu>
Diff between CBPS versions 0.20 dated 2019-03-22 and 0.21 dated 2019-08-21
ChangeLog | 1 + DESCRIPTION | 14 +++++++------- MD5 | 16 ++++++++-------- R/CBPSMain.R | 11 +++++++---- man/CBMSM.Rd | 15 ++++++++------- man/CBMSM.fit.Rd | 4 ++-- man/CBPS.Rd | 15 +++++++++------ man/plot.CBMSM.Rd | 4 ++-- man/plot.CBPS.Rd | 3 ++- 9 files changed, 46 insertions(+), 37 deletions(-)
Title: Interactive Visualization of Bayesian Networks
Description: Bayesian networks provide an intuitive framework for probabilistic reasoning
and its graphical nature can be interpreted quite clearly. Graph based methods
of machine learning are becoming more popular because they offer a richer model
of knowledge that can be understood by a human in a graphical format. The 'bnviewer'
is an R Package that allows the interactive visualization of Bayesian Networks.
The aim of this package is to improve the Bayesian Networks visualization over
the basic and static views offered by existing packages.
Author: Robson Fernandes
Maintainer: Robson Fernandes <robson.fernandes@usp.br>
Diff between bnviewer versions 0.1.3 dated 2019-06-08 and 0.1.4 dated 2019-08-21
DESCRIPTION | 8 +- MD5 | 9 +- R/bnviewer.R | 156 +++++++++++++++++++++++++++++++++++++++++------- man/bnviewer-package.Rd | 6 - man/viewer.Rd | 106 +++++++++++++++++++++++++------- tests/clusters.R |only 6 files changed, 231 insertions(+), 54 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
Raniere Silva [ctb],
Jozef Hajnala [ctb],
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.14 dated 2019-07-13 and 0.15 dated 2019-08-21
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 6 ++++++ R/install.R | 1 + inst/scripts/insert_image.R | 2 +- tests/testit/test-addin.R |only 6 files changed, 16 insertions(+), 8 deletions(-)
Title: Affinity Propagation Clustering
Description: Implements Affinity Propagation clustering introduced by Frey and
Dueck (2007) <DOI:10.1126/science.1136800>. The algorithms are largely
analogous to the 'Matlab' code published by Frey and Dueck.
The package further provides leveraged affinity propagation and an
algorithm for exemplar-based agglomerative clustering that can also be
used to join clusters obtained from affinity propagation. Various
plotting functions are available for analyzing clustering results.
Author: Ulrich Bodenhofer, Johannes Palme, Chrats Melkonian, Andreas Kothmeier,
Nikola Kostic
Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>
Diff between apcluster versions 1.4.7 dated 2018-05-29 and 1.4.8 dated 2019-08-21
apcluster-1.4.7/apcluster/man/ch22Promoters.Rd |only apcluster-1.4.8/apcluster/DESCRIPTION | 8 +++---- apcluster-1.4.8/apcluster/MD5 | 21 +++++++++----------- apcluster-1.4.8/apcluster/build/vignette.rds |binary apcluster-1.4.8/apcluster/inst/NEWS | 6 +++++ apcluster-1.4.8/apcluster/inst/doc/apcluster.Rnw | 11 ++++++++-- apcluster-1.4.8/apcluster/inst/doc/apcluster.pdf |binary apcluster-1.4.8/apcluster/man/apcluster-methods.Rd | 2 - apcluster-1.4.8/apcluster/man/apclusterK-methods.Rd | 2 - apcluster-1.4.8/apcluster/man/apclusterL-methods.Rd | 2 - apcluster-1.4.8/apcluster/src/aggExClusterC.cpp | 9 +++++--- apcluster-1.4.8/apcluster/vignettes/apcluster.Rnw | 11 ++++++++-- 12 files changed, 47 insertions(+), 25 deletions(-)