Thu, 22 Aug 2019

Package STMotif updated to version 1.0.4 with previous version 1.0.3 dated 2019-08-22

Title: Discovery of Motifs in Spatial-Time Series
Description: Allow to identify motifs in spatial-time series. A motif is a previously unknown subsequence of a (spatial) time series with relevant number of occurrences. For this purpose, the Combined Series Approach (CSA) is used.
Author: Heraldo Borges [aut, cre] (CEFET/RJ), Amin Bazaz [aut] (Polytech'Montpellier), Luciana Escobar [aut] (CEFET/RJ), Esther Pacitti [aut] (University of Montpellier), Eduardo Ogasawara [aut] (CEFET/RJ)
Maintainer: Heraldo Borges <stmotif@eic.cefet-rj.br>

Diff between STMotif versions 1.0.3 dated 2019-08-22 and 1.0.4 dated 2019-08-22

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Package pulsar updated to version 0.3.6 with previous version 0.3.5 dated 2019-03-07

Title: Parallel Utilities for Lambda Selection along a Regularization Path
Description: Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS). Christian L. Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Author: Zachary Kurtz [aut, cre], Christian Müller [aut, ctb]
Maintainer: Zachary Kurtz <zdkurtz@gmail.com>

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Package raster updated to version 3.0-2 with previous version 2.9-23 dated 2019-07-11

Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported. There is a also support for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>), Jacob van Etten [ctb], Michael Sumner [ctb], Joe Cheng [ctb], Andrew Bevan [ctb], Roger Bivand [ctb], Lorenzo Busetto [ctb], Mort Canty [ctb], David Forrest [ctb], Aniruddha Ghosh [ctb], Duncan Golicher [ctb], Josh Gray [ctb], Jonathan A. Greenberg [ctb], Paul Hiemstra [ctb], Institute for Mathematics Applied Geosciences [cph], Charles Karney [ctb], Matteo Mattiuzzi [ctb], Steven Mosher [ctb], Jakub Nowosad [ctb], Edzer Pebesma [ctb], Oscar Perpinan Lamigueiro [ctb], Etienne B. Racine [ctb], Barry Rowlingson [ctb], Ashton Shortridge [ctb], Bill Venables [ctb], Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>

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Package zoib updated to version 1.5.2 with previous version 1.5.1 dated 2018-04-07

Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>

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Package mlr3misc updated to version 0.1.3 with previous version 0.1.2 dated 2019-08-07

Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in 'mlr3' and its companion packages. Comes with helper functions for functional programming, for printing, to work with 'data.table', as well as some generally useful 'R6' classes. This package also supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>

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Package genepop updated to version 1.1.3 with previous version 1.1.2 dated 2019-06-23

Title: Population Genetic Data Analysis Using Genepop
Description: Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.
Author: François Rousset [aut, cre, cph], Jimmy Lopez [ctb], Khalid Belkhir [ctb]
Maintainer: François Rousset <francois.rousset@umontpellier.fr>

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Package behaviorchange updated to version 0.2.1 with previous version 0.2.0 dated 2019-08-08

Title: Tools for Behavior Change Researchers and Professionals
Description: Contains specialised analyses and visualisation tools for behavior change science. These facilitate conducting determinant studies (for example, using confidence interval-based estimation of relevance, CIBER, or CIBERlite plots), systematically developing, reporting, and analysing interventions (for example, using acyclic behavior change diagrams), and reporting about intervention effectiveness (for example, using the Numbers Needed for Change), and computing the required sample size (using the Meaningful Change Definition). This package is especially useful for researchers in the field of behavior change or health psychology and to behavior change professionals such as intervention developers and prevention workers.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>), Rik Crutzen [ctb] (<https://orcid.org/0000-0002-3731-6610>), Stefan Gruijters [ctb] (<https://orcid.org/0000-0003-0141-0071>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@a-bc.eu>

Diff between behaviorchange versions 0.2.0 dated 2019-08-08 and 0.2.1 dated 2019-08-22

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Package GenEst updated to version 1.3.1 with previous version 1.3.0 dated 2019-07-18

Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre], Juniper Simonis [aut], Lisa Madsen [aut], Manuela Huso [aut], Paul Rabie [aut], Jeffrey Mintz [aut], Robert Wolpert [aut], Jared Studyvin [aut], Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@usgs.gov>

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Package ufs updated to version 0.3.1 with previous version 0.3.0 dated 2019-07-22

Title: Quantitative Analysis Made Accessible
Description: This is a new version of the 'userfriendlyscience' package, which has grown a bit unwieldy. Therefore, distinct functionalities are being 'consciously uncoupled' into different packages. This package contains the general-purpose tools and utilities (see the 'behaviorchange' package, the 'rosetta' package, and the soon-to-be-released 'scd' package for other functionality), and is the most direct 'successor' of the original 'userfriendlyscience' package. For example, this package contains a number of basic functions to create higher level plots, such as diamond plots, to easily plot sampling distributions, to generate confidence intervals, to plan study sample sizes for confidence intervals, and to do some basic operations such as (dis)attenuate effect size estimates.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>

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Package MixGHD updated to version 2.3.3 with previous version 2.3.2 dated 2019-04-12

Title: Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution. The first model 'MGHD' (Browne and McNicholas (2015) <doi:10.1002/cjs.11246>) is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' (Tortora et al. (2016) <doi:10.1007/s11634-015-0204-z>) is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD'(Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>) is a 'MSGHD' with convex contour plots. The 'MCGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora [aut, cre, cph], Aisha ElSherbiny [com], Ryan P. Browne [aut, cph], Brian C. Franczak [aut, cph], and Paul D. McNicholas [aut, cph], and Donald D. Amos [ctb].
Maintainer: Cristina Tortora <grikris1@gmail.com>

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Package MetaboList updated to version 2.0 with previous version 1.4 dated 2019-06-04

Title: Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data
Description: Automatic metabolite annotation from Liquid Chromatography-Mass Spectrometry (LC-MS and LC-MS/MS DIA) analysis.
Author: Manuel David Peris Diaz
Maintainer: Manuel David Peris Diaz <manuel.perisdiaz@uwr.edu.pl>

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Package FPDclustering updated to version 1.3.1 with previous version 1.3 dated 2019-04-12

Title: PD-Clustering and Factor PD-Clustering
Description: Probabilistic distance clustering (PD-clustering) is an iterative, distribution free, probabilistic clustering method. PD-clustering assigns units to a cluster according to their probability of membership, under the constraint that the product of the probability and the distance of each point to any cluster centre is a constant. PD-clustering is a flexible method that can be used with non-spherical clusters, outliers, or noisy data. PDQ is an extension of the algorithm for clusters of different size. Factor PD-clustering (FPDC) is a recently proposed factor clustering method that involves a linear transformation of variables and a cluster optimizing the PD-clustering criterion. It works on high dimensional datasets.
Author: Cristina Tortora [aut, cre, cph], Noe Vidales [aut], and Paul D. McNicholas [fnd]
Maintainer: Cristina Tortora <grikris1@gmail.com>

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Package pmd updated to version 0.1.5 with previous version 0.1.1 dated 2018-12-02

Title: Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis
Description: Paired mass distance (PMD) analysis proposed in Yu, Olkowicz and Pawliszyn (2018) <doi:10.1016/j.aca.2018.10.062> for gas/liquid chromatography–mass spectrometry (GC/LC-MS) based non-targeted analysis. PMD analysis including GlobalStd algorithm and structure/reaction directed analysis. GlobalStd algorithm could found independent peaks in m/z-retention time profiles based on retention time hierarchical cluster analysis and frequency analysis of paired mass distances within retention time groups. Structure directed analysis could be used to find potential relationship among those independent peaks in different retention time groups based on frequency of paired mass distances. A GUI for PMD analysis is also included as a 'shiny' application.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>)
Maintainer: Miao YU <yufreecas@gmail.com>

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Package nat updated to version 1.8.13 with previous version 1.8.11 dated 2017-11-12

Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).
Author: Gregory Jefferis [aut, cre] (<https://orcid.org/0000-0002-0587-9355>), James Manton [aut] (<https://orcid.org/0000-0001-9260-3156>)
Maintainer: Gregory Jefferis <jefferis@gmail.com>

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More information about nat at CRAN
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Package tdthap updated to version 1.1-11 with previous version 1.1-9 dated 2018-06-30

Title: TDT Tests for Extended Haplotypes
Description: Functions and examples are provided for Transmission/disequilibrium tests for extended marker haplotypes, as in Clayton, D. and Jones, H. (1999) "Transmission/disequilibrium tests for extended marker haplotypes". Amer. J. Hum. Genet., 65:1161-1169, <doi:10.1086/302566>.
Author: David Clayton
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>

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Package GillespieSSA2 updated to version 0.2.5 with previous version 0.2.4 dated 2019-08-05

Title: Gillespie's Stochastic Simulation Algorithm for Impatient People
Description: A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>

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Package esquisse updated to version 0.2.2 with previous version 0.2.1 dated 2019-07-01

Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' charts interactively with drag-and-drop to map your variables. You can quickly visualize your data accordingly to their type, export to 'PNG' or 'PowerPoint', and retrieve the code to reproduce the chart.
Author: Fanny Meyer [aut], Victor Perrier [aut, cre], Ian Carroll [ctb] (Facets support)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

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New package rscielo with initial version 1.0.0
Package: rscielo
Type: Package
Title: A Scraper for Scientific Journals Hosted on Scielo
Version: 1.0.0
Authors@R: c( person("Fernando", "Meireles", , "fernando.meireles@iesp.uerj.br", c("aut", "cre"), c(ORCID = "0000-0002-7027-2058")), person("Denisson", "Silva", , "silvadenisson@ufmg.br", c("aut"), c(ORCID = "0000-0003-2771-8146")), person("Rogerio", "Barbosa", , "antrologos@gmail.com", c("aut"), c(ORCID = "0000-0002-7027-2058")) )
Description: Scrapes data from scientific articles hosted on the Scientific Electronic Library Online Platform <http://www.scielo.br/>. The data information includes author's names, articles' metadata and contents, among others. The package also provides additional functions to easily summarize the scraped data.
License: GPL-3
Depends: R (>= 3.1)
Imports: graphics, magrittr, stats, xml2, httr (>= 0.5), rvest, stringr, tibble, purrr, dplyr
LazyData: TRUE
URL: https://github.com/meirelesff/rscielo
BugReports: https://github.com/meirelesff/rscielo/issues
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-08-21 15:44:21 UTC; meire
Author: Fernando Meireles [aut, cre] (<https://orcid.org/0000-0002-7027-2058>), Denisson Silva [aut] (<https://orcid.org/0000-0003-2771-8146>), Rogerio Barbosa [aut] (<https://orcid.org/0000-0002-7027-2058>)
Maintainer: Fernando Meireles <fernando.meireles@iesp.uerj.br>
Repository: CRAN
Date/Publication: 2019-08-22 12:10:02 UTC

More information about rscielo at CRAN
Permanent link

Package dexter updated to version 1.0.0 with previous version 0.8.5 dated 2019-04-25

Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Jesse Koops <jesse.koops@cito.nl>

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Package apexcharter updated to version 0.1.2 with previous version 0.1.1 dated 2019-07-28

Title: Create Interactive Chart with the JavaScript 'ApexCharts' Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'. 'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API. 'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], Juned Chhipa [cph] (apexcharts.js library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

Diff between apexcharter versions 0.1.1 dated 2019-07-28 and 0.1.2 dated 2019-08-22

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Package forecast updated to version 8.9 with previous version 8.8 dated 2019-08-02

Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph] (<https://orcid.org/0000-0002-2140-5352>), George Athanasopoulos [aut], Christoph Bergmeir [aut] (<https://orcid.org/0000-0002-3665-9021>), Gabriel Caceres [aut], Leanne Chhay [aut], Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>), Fotios Petropoulos [aut] (<https://orcid.org/0000-0003-3039-4955>), Slava Razbash [aut], Earo Wang [aut], Farah Yasmeen [aut] (<https://orcid.org/0000-0002-1479-5401>), R Core Team [ctb, cph], Ross Ihaka [ctb, cph], Daniel Reid [ctb], David Shaub [ctb], Yuan Tang [ctb] (<https://orcid.org/0000-0001-5243-233X>), Zhenyu Zhou [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>

Diff between forecast versions 8.8 dated 2019-08-02 and 8.9 dated 2019-08-22

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New package gretel with initial version 0.0.1
Package: gretel
Title: Generalized Path Analysis for Social Networks
Version: 0.0.1
Date: 2019-08-09
Authors@R: person("David", "Buch", email = "davidbuch42@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4574-0075"))
Description: The social network literature features numerous methods for assigning value to paths as a function of their ties. 'gretel' systemizes these approaches, casting them as instances of a generalized path value function indexed by a penalty parameter. The package also calculates probabilistic path value and identifies optimal paths in either value framework. Finally, proximity matrices can be generated in these frameworks that capture high-order connections overlooked in primitive adjacency sociomatrices. Novel methods are described in Buch (2019) <https://davidbuch.github.io/analyzing-networks-with-gretel.html>. More traditional methods are also implemented, as described in Yang, Knoke (2001) <doi:10.1016/S0378-8733(01)00043-0>.
Maintainer: David Buch <davidbuch42@gmail.com>
URL: https://github.com/davidbuch/gretel
BugReports: https://github.com/davidbuch/gretel/issues
License: GPL-3
Depends: R (>= 3.0)
Imports: Rcpp (>= 1.0.0), ResistorArray (>= 1.0-32)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.1.0)
VignetteBuilder: knitr
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-08-21 11:38:45 UTC; Buch
Author: David Buch [aut, cre] (<https://orcid.org/0000-0002-4574-0075>)
Repository: CRAN
Date/Publication: 2019-08-22 12:00:02 UTC

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Package STMotif updated to version 1.0.3 with previous version 1.0.2 dated 2019-02-11

Title: Discovery of Motifs in Spatial-Time Series
Description: Allow to identify motifs in spatial-time series. A motif is a previously unknown subsequence of a (spatial) time series with relevant number of occurrences. For this purpose, the Combined Series Approach (CSA) is used.
Author: Heraldo Borges [aut, cre] (CEFET/RJ), Amin Bazaz [aut] (Polytech'Montpellier), Luciana Escobar [aut] (CEFET/RJ), Esther Pacitti [aut] (CEFET/RJ), Eduardo Ogasawara [aut] (CEFET/RJ)
Maintainer: Heraldo Borges <stmotif@eic.cefet-rj.br>

Diff between STMotif versions 1.0.2 dated 2019-02-11 and 1.0.3 dated 2019-08-22

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Package nandb updated to version 2.0.5 with previous version 2.0.4 dated 2019-07-08

Title: Number and Brightness Image Analysis
Description: Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>), Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>), Sergi Padilla-Parra [ctb, ths, cph] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between nandb versions 2.0.4 dated 2019-07-08 and 2.0.5 dated 2019-08-22

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New package simGWAS with initial version 0.2.0-2
Package: simGWAS
Type: Package
Title: Fast Simulation of Large Case-Control GWAS Summary Statistics
Version: 0.2.0-2
Date: 2019-08-19
Authors@R: c(person("Mary", "Fortune", role=c("aut"), email = "mdf34@cam.ac.uk"), person("Chris","Wallace", role=c("aut","cre"), email="cew54@cam.ac.uk"), person("Marcus", "Klarqvist", role=c("ctb")))
Author: Mary Fortune [aut], Chris Wallace [aut, cre], Marcus Klarqvist [ctb]
Maintainer: Chris Wallace <cew54@cam.ac.uk>
Description: Simulating output from a case-control genome wide association study (GWAS) with a given causal model. Fortune and Wallace (2019) <doi:10.1093/bioinformatics/bty898>.
License: GPL
LazyLoad: yes
OS_type: unix
Collate: 'simGWAS.R' 'compute_gamma0.R' 'vbeta.R' 'zscore.R' 'extractsnps.R' 'make_dataset.R' 'make_GenoProbList.R' 'RcppExports.R'
LinkingTo: Rcpp
Imports: Rcpp, dplyr, combinat, corpcor, mvtnorm
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
URL: https://github.com/chr1swallace/simGWAS
BugReports: https://github.com/chr1swallace/simGWAS/issues
NeedsCompilation: yes
Packaged: 2019-08-20 21:01:25 UTC; chris
Repository: CRAN
Date/Publication: 2019-08-22 08:20:02 UTC

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New package cursory with initial version 1.0.0
Package: cursory
Type: Package
Title: A Cursory Look at Variables
Version: 1.0.0
Authors@R: person("Andrew", "Redd", role = c("aut", "cre") , email = "Andrew.Redd@hsc.utah.edu" , comment = c(ORCID = "https://orcid.org/000-0002-6149-2438") )
Maintainer: Andrew Redd <Andrew.Redd@hsc.utah.edu>
Description: Provides functions for quickly looking at summary statistics for variables in a data set.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Language: en-US
RoxygenNote: 6.1.1
Imports: dplyr, methods, pkgcond, purrr, rlang, tibble, tidymargins, tidyr, tidyselect
Suggests: covr, forcats, datasets, dbplyr, testthat, testextra, DBI, RSQLite
URL: https://github.com/halpo/cursory
BugReports: https://github.com/halpo/cursory/issues
NeedsCompilation: no
Packaged: 2019-08-20 21:26:04 UTC; u0092104
Author: Andrew Redd [aut, cre] (<https://orcid.org/000-0002-6149-2438>)
Repository: CRAN
Date/Publication: 2019-08-22 08:40:02 UTC

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New package Rirt with initial version 0.0.1
Package: Rirt
Type: Package
Title: Item Response Theory Models
Version: 0.0.1
Date: 2019-08-05
Authors@R: c(person("Xiao", "Luo", role=c("aut","cre"), email="xluo1986@gmail.com"))
Author: Xiao Luo [aut, cre]
Maintainer: Xiao Luo <xluo1986@gmail.com>
Description: Parameter estimation, computation of probability, information, and (log-)likelihood, and visualization of item/test characteristic curves and item/test information functions for three uni-dimensional item response theory models: the 3-parameter-logistic model, generalized partial credit model, and graded response model. The full documentation and tutorials are at <https://github.com/xluo11/Rirt>.
License: GPL (>= 3)
Depends: R (>= 3.6.0)
URL: https://github.com/xluo11/Rirt
BugReports: https://github.com/xluo11/Rirt/issues
LinkingTo: Rcpp
Imports: ggplot2, Rcpp, reshape2, stats
Suggests: testthat
RoxygenNote: 6.1.1
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2019-08-20 18:14:03 UTC; Luo.Xiao
Repository: CRAN
Date/Publication: 2019-08-22 07:50:05 UTC

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New package QuantileNPCI with initial version 0.2.95
Package: QuantileNPCI
Type: Package
Title: Nonparametric Confidence Intervals for Quantiles
Version: 0.2.95
Authors@R: c( person("Nicholas", "Hutson", role = "aut"), person("Li", "Yan", role=c("aut", "cre"), email = "li.yan@roswellpark.org") )
Maintainer: Li Yan <li.yan@roswellpark.org>
Description: Based on Alan D. Hutson (1999) <doi:10.1080/02664769922458>, "Calculating nonparametric confidence intervals for quantiles using fractional order statistics", Journal of Applied Statistics, 26:3, 343-353.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
Suggests: dplyr, kableExtra, knitr, rmarkdown, testthat (>= 2.1.0)
Depends: R (>= 2.10)
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-08-20 19:30:03 UTC; liyan
Author: Nicholas Hutson [aut], Li Yan [aut, cre]
Repository: CRAN
Date/Publication: 2019-08-22 07:20:02 UTC

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New package mRpostman with initial version 0.2.0
Package: mRpostman
Type: Package
Title: IMAP Tools in a Tidy Way
Version: 0.2.0
Date: 2019-08-18
Authors@R: c( person(given="Allan", family="Quadros", email = "allanvcq@gmail.com", role = c("aut", "cre")))
Description: Multiple IMAP (Internet Message Access Protocol) commands based on the RFC 3501 manual (Crispin, 2003, <doi:10.17487/RFC3501>), its updates, and other related documents. Besides other features, 'mRpostman' provides functions for listing, selecting and renaming mailboxes, as well as moving, fetching, and searching for messages using several criteria.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: curl, stringr, magrittr, assertthat, base64enc
Depends: R (>= 3.1.0)
BugReports: https://github.com/allanvc/mRpostman/issues
SystemRequirements: libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-08-20 19:12:26 UTC; allan
Author: Allan Quadros [aut, cre]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Repository: CRAN
Date/Publication: 2019-08-22 07:30:02 UTC

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New package DoE.multi.response with initial version 0.1.0
Package: DoE.multi.response
Title: Construct Multi-Response Experimental Designs
Version: 0.1.0
Authors@R: person("Wilmina", "Marget", email = "margetw@augsburg.edu", role = c("aut", "cre"))
Description: Construct multi-response experimental designs, such as a Unique Factor Central Composite Design (UF-CCD), given information (from screening or expert knowledge) about which factors are related to each response variable (Wilmina M. Marget & Max D. Morris, 2019 <doi:10.1080/00401706.2018.1549102>).
Depends: R (>= 3.6), DoE.wrapper (>= 0.10)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2019-08-21 15:01:29 UTC; margetw
Author: Wilmina Marget [aut, cre]
Maintainer: Wilmina Marget <margetw@augsburg.edu>
Repository: CRAN
Date/Publication: 2019-08-22 07:10:02 UTC

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New package bigutilsr with initial version 0.1.1
Package: bigutilsr
Title: Utility Functions for Large-scale Data
Version: 0.1.1
Date: 2019-08-20
Authors@R: person("Florian", "Privé", email = "florian.prive.21@gmail.com", role = c("aut", "cre"))
Description: Utility functions for large-scale data. For now, package 'bigutilsr' mainly includes functions for outlier detection.
License: GPL-3
Encoding: UTF-8
Language: en-US
LazyData: TRUE
ByteCompile: TRUE
RoxygenNote: 6.1.0
URL: https://github.com/privefl/bigutilsr
BugReports: https://github.com/privefl/bigutilsr/issues
LinkingTo: Rcpp
Imports: hdpca, nabor, Rcpp, robustbase, robust, stats
Suggests: covr, spelling, testthat
NeedsCompilation: yes
Packaged: 2019-08-20 20:32:14 UTC; privef
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Repository: CRAN
Date/Publication: 2019-08-22 07:50:02 UTC

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Package SECFISH (with last version 0.1.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-08-21 0.1.5

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Package units updated to version 0.6-4 with previous version 0.6-3 dated 2019-05-03

Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices and arrays: automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the POSIXct, Date and difftime classes. Uses the UNIDATA udunits library and unit database for unit compatibility checking and conversion. Documentation about 'units' is provided in the paper by Pebesma, Mailund & Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>), Thomas Mailund [aut], Tomasz Kalinowski [aut], James Hiebert [ctb], Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between units versions 0.6-3 dated 2019-05-03 and 0.6-4 dated 2019-08-22

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Package radiant.data updated to version 1.0.6 with previous version 1.0.0 dated 2019-07-18

Title: Data Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.data versions 1.0.0 dated 2019-07-18 and 1.0.6 dated 2019-08-22

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Package geohashTools (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-08-21 0.2.2

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Package rpart.plot updated to version 3.0.8 with previous version 3.0.7 dated 2019-04-12

Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between rpart.plot versions 3.0.7 dated 2019-04-12 and 3.0.8 dated 2019-08-22

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 26 files changed, 387 insertions(+), 238 deletions(-)

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Package paws updated to version 0.1.4 with previous version 0.1.3 dated 2019-07-28

Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>, including storage, database, and compute services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda' functions-as-a-service.
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>

Diff between paws versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-22

 DESCRIPTION |   26 +++++++++++++-------------
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 R/paws.R    |    4 ++--
 man/acm.Rd  |    2 +-
 man/kms.Rd  |    2 +-
 6 files changed, 22 insertions(+), 21 deletions(-)

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Package enviGCMS updated to version 0.5.7 with previous version 0.5.5 dated 2019-05-14

Title: GC/LC-MS Data Analysis for Environmental Science
Description: Gas/Liquid Chromatography-Mass Spectrometer(GC/LC-MS) Data Analysis for Environmental Science. This package covered topics such molecular isotope ratio, matrix effects and Short-Chain Chlorinated Paraffins analysis etc. in environmental analysis.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>), Thanh Wang [ctb] (<https://orcid.org/0000-0002-5729-1908>)
Maintainer: Miao YU <yufreecas@gmail.com>

Diff between enviGCMS versions 0.5.5 dated 2019-05-14 and 0.5.7 dated 2019-08-22

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Package Eagle updated to version 1.5.2 with previous version 1.5.1 dated 2019-05-24

Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre], Joshua Bowden [ctb], Ryan Stephenson [ctb], Hyun Kang [ctb], Noah Zaitlen [ctb], Claire Wade [ctb], Andrew Kirby [ctb], David Heckerman [ctb], Mark Daly [ctb], Eleazar Eskin [ctb]
Maintainer: Andrew George <andrew.george@csiro.au>

Diff between Eagle versions 1.5.1 dated 2019-05-24 and 1.5.2 dated 2019-08-22

 DESCRIPTION                       |    6 +++---
 MD5                               |    8 ++++----
 R/FPR4AM.R                        |    2 +-
 R/onAttach.R                      |    2 +-
 src/calculate_a_and_vara_rcpp.cpp |    8 +++++---
 5 files changed, 14 insertions(+), 12 deletions(-)

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