Title: Discovery of Motifs in Spatial-Time Series
Description: Allow to identify motifs in spatial-time series. A motif is a previously unknown subsequence of a (spatial) time series with relevant number of occurrences. For this purpose, the Combined Series Approach (CSA) is used.
Author: Heraldo Borges [aut, cre] (CEFET/RJ),
Amin Bazaz [aut] (Polytech'Montpellier),
Luciana Escobar [aut] (CEFET/RJ),
Esther Pacitti [aut] (University of Montpellier),
Eduardo Ogasawara [aut] (CEFET/RJ)
Maintainer: Heraldo Borges <stmotif@eic.cefet-rj.br>
Diff between STMotif versions 1.0.3 dated 2019-08-22 and 1.0.4 dated 2019-08-22
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Parallel Utilities for Lambda Selection along a Regularization
Path
Description: Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS). Christian L. Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Author: Zachary Kurtz [aut, cre],
Christian Müller [aut, ctb]
Maintainer: Zachary Kurtz <zdkurtz@gmail.com>
Diff between pulsar versions 0.3.5 dated 2019-03-07 and 0.3.6 dated 2019-08-22
DESCRIPTION | 6 MD5 | 13 +- NEWS | 6 R/mcPulsarSelect.R | 59 +++++++++ build/vignette.rds |binary inst/doc/other-criteria.html | 203 ++++++++++++++++++-------------- inst/doc/pulsar.html | 217 +++++++++++++++++++---------------- tests/testthat/test_errorreporting.R |only 8 files changed, 307 insertions(+), 197 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported. There is a also support for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 2.9-23 dated 2019-07-11 and 3.0-2 dated 2019-08-22
ChangeLog | 16 ++++++++-- DESCRIPTION | 8 ++--- MD5 | 74 +++++++++++++++++++++++------------------------ NAMESPACE | 2 - R/AAgeneric_functions.R | 16 ++++++++++ R/RcppExports.R | 4 +- R/buffer.R | 2 - R/calc.R | 14 ++++++-- R/cellStats.R | 2 - R/clamp.R | 1 R/extractLines.R | 6 +++ R/extractPoints.R | 4 +- R/freq.R | 4 -- R/geom.R | 2 - R/getData.R | 2 - R/index.R | 2 - R/indexReplaceBrick.R | 2 - R/intersect_sp.R | 2 - R/modal.R | 4 -- R/plot.R | 6 --- R/rasterFromXYZ.R | 4 +- R/reclassify.R | 11 +++++-- R/replaceProperties.R | 75 ++++++++++++++++++++++++++---------------------- R/roundExtent.R | 3 + R/sampleRandom.R | 6 --- R/sampleStratified.R | 6 --- R/spplot.R | 18 ++++++++++- R/text.R | 4 +- R/xyCell.R | 2 - R/xyMinMax.R | 4 -- inst/doc/Raster.pdf |binary inst/doc/functions.pdf |binary inst/doc/rasterfile.pdf |binary man/coordinates.Rd | 25 +++++++++++----- man/rasterTmpFile.Rd | 5 --- man/spplot.Rd | 8 +++-- src/RcppExports.cpp | 47 +++++++++++++++--------------- src/reclass.cpp | 7 ---- 38 files changed, 222 insertions(+), 176 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.5.1 dated 2018-04-07 and 1.5.2 dated 2019-08-22
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- R/pred.zoib.R | 8 ++++---- man/zoib-package.Rd | 4 ++-- tests/test1.R | 2 +- tests/test2.R | 2 +- 6 files changed, 17 insertions(+), 18 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.1.2 dated 2019-08-07 and 0.1.3 dated 2019-08-22
mlr3misc-0.1.2/mlr3misc/inst |only mlr3misc-0.1.3/mlr3misc/DESCRIPTION | 10 - mlr3misc-0.1.3/mlr3misc/MD5 | 54 +++---- mlr3misc-0.1.3/mlr3misc/NAMESPACE | 2 mlr3misc-0.1.3/mlr3misc/NEWS.md | 7 mlr3misc-0.1.3/mlr3misc/R/Dictionary.R | 73 ++++++---- mlr3misc-0.1.3/mlr3misc/R/chunk.R | 1 mlr3misc-0.1.3/mlr3misc/R/dictionary_sugar.R |only mlr3misc-0.1.3/mlr3misc/R/distinct_values.R | 17 +- mlr3misc-0.1.3/mlr3misc/R/encapsulate.R | 7 mlr3misc-0.1.3/mlr3misc/R/has_element.R | 3 mlr3misc-0.1.3/mlr3misc/R/insert_named.R | 3 mlr3misc-0.1.3/mlr3misc/R/invoke.R | 7 mlr3misc-0.1.3/mlr3misc/R/purrr_map.R | 12 + mlr3misc-0.1.3/mlr3misc/R/rowwise_table.R | 3 mlr3misc-0.1.3/mlr3misc/R/set_names.R | 12 - mlr3misc-0.1.3/mlr3misc/R/which_min.R | 2 mlr3misc-0.1.3/mlr3misc/R/zzz.R | 3 mlr3misc-0.1.3/mlr3misc/man/Dictionary.Rd | 24 ++- mlr3misc-0.1.3/mlr3misc/man/compat-map.Rd | 4 mlr3misc-0.1.3/mlr3misc/man/dictionary_sugar.Rd |only mlr3misc-0.1.3/mlr3misc/man/encapsulate.Rd | 3 mlr3misc-0.1.3/mlr3misc/man/mlr3misc-package.Rd | 1 mlr3misc-0.1.3/mlr3misc/tests/testthat.R | 9 - mlr3misc-0.1.3/mlr3misc/tests/testthat/test_Dictionary.R | 31 +++- mlr3misc-0.1.3/mlr3misc/tests/testthat/test_distinct_values.R | 30 ++-- mlr3misc-0.1.3/mlr3misc/tests/testthat/test_has_element.R |only mlr3misc-0.1.3/mlr3misc/tests/testthat/test_map.R | 10 + mlr3misc-0.1.3/mlr3misc/tests/testthat/test_purrr_detect.R | 35 ---- mlr3misc-0.1.3/mlr3misc/tests/testthat/test_rowwise_table.R | 2 30 files changed, 217 insertions(+), 148 deletions(-)
Title: Population Genetic Data Analysis Using Genepop
Description: Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.
Author: François Rousset [aut, cre, cph],
Jimmy Lopez [ctb],
Khalid Belkhir [ctb]
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between genepop versions 1.1.2 dated 2019-06-23 and 1.1.3 dated 2019-08-22
DESCRIPTION | 8 ++-- MD5 | 51 +++++++++++++------------- R/Genepop.R | 70 ++++++++++++++----------------------- inst/NEWS.Rd | 9 ++++ inst/doc/GenepopS.pdf |binary inst/doc/GenepopS.tex | 23 ++++++++---- man/Contingency-test.Rd | 4 -- man/Differentiation.Rd | 4 -- man/Fst.Rd | 4 -- man/Hardy-Weinberg.Rd | 8 +--- man/IBD.Rd | 8 +--- man/Linkage.Rd | 8 +--- man/Nm_private.Rd | 4 -- man/basic_info.Rd | 4 -- man/conversion.Rd | 4 -- man/genedivFis.Rd | 4 -- man/genepopExample.Rd |only man/manipulation.Rd | 4 -- tests/testthat/test_Fis.R | 8 +--- tests/testthat/test_Fst.R | 12 ++---- tests/testthat/test_IBD.R | 10 +---- tests/testthat/tests_HW.R | 14 ++----- tests/testthat/tests_contingency.R | 14 ++----- tests/testthat/tests_conversions.R | 6 +-- tests/testthat/tests_diff.R | 12 ++---- tests/testthat/tests_linkage.R | 6 +-- tests/testthat/tests_private_all.R | 10 ++--- 27 files changed, 130 insertions(+), 179 deletions(-)
Title: Tools for Behavior Change Researchers and Professionals
Description: Contains specialised analyses and
visualisation tools for behavior change science.
These facilitate conducting determinant studies
(for example, using confidence interval-based
estimation of relevance, CIBER, or CIBERlite
plots), systematically developing, reporting,
and analysing interventions (for example, using
acyclic behavior change diagrams), and reporting
about intervention effectiveness (for example, using
the Numbers Needed for Change), and computing the
required sample size (using the Meaningful Change
Definition). This package is especially useful for
researchers in the field of behavior change or
health psychology and to behavior change
professionals such as intervention developers and
prevention workers.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Rik Crutzen [ctb] (<https://orcid.org/0000-0002-3731-6610>),
Stefan Gruijters [ctb] (<https://orcid.org/0000-0003-0141-0071>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@a-bc.eu>
Diff between behaviorchange versions 0.2.0 dated 2019-08-08 and 0.2.1 dated 2019-08-22
behaviorchange-0.2.0/behaviorchange/inst/doc/matrix-van-aspecten-van-de-psychologie.R |only behaviorchange-0.2.1/behaviorchange/DESCRIPTION | 26 behaviorchange-0.2.1/behaviorchange/MD5 | 61 - behaviorchange-0.2.1/behaviorchange/NAMESPACE | 1 behaviorchange-0.2.1/behaviorchange/R/CIBER.R | 59 + behaviorchange-0.2.1/behaviorchange/R/CIBERlite.R | 454 +++++----- behaviorchange-0.2.1/behaviorchange/R/abcd.R | 195 +++- behaviorchange-0.2.1/behaviorchange/R/behaviorchange.R | 12 behaviorchange-0.2.1/behaviorchange/R/binaryCIBER.R | 132 ++ behaviorchange-0.2.1/behaviorchange/R/data-BBC_pp.R |only behaviorchange-0.2.1/behaviorchange/R/lm_rSq_ci.R | 9 behaviorchange-0.2.1/behaviorchange/README.md | 13 behaviorchange-0.2.1/behaviorchange/build/partial.rdb |binary behaviorchange-0.2.1/behaviorchange/build/vignette.rds |binary behaviorchange-0.2.1/behaviorchange/data/BBC_pp15.1.csv |only behaviorchange-0.2.1/behaviorchange/data/BBC_pp16.1.csv |only behaviorchange-0.2.1/behaviorchange/data/BBC_pp17.1.csv |only behaviorchange-0.2.1/behaviorchange/data/BBC_pp18.1.csv |only behaviorchange-0.2.1/behaviorchange/data/abcd_specification_empty.csv |only behaviorchange-0.2.1/behaviorchange/data/abcd_specification_example_xtc.csv |only behaviorchange-0.2.1/behaviorchange/data/datalist |only behaviorchange-0.2.1/behaviorchange/inst/doc/abcd-laagdrempelige_nederlandse_uitleg.R | 4 behaviorchange-0.2.1/behaviorchange/inst/doc/abcd-laagdrempelige_nederlandse_uitleg.Rmd | 6 behaviorchange-0.2.1/behaviorchange/inst/doc/abcd-laagdrempelige_nederlandse_uitleg.html | 10 behaviorchange-0.2.1/behaviorchange/inst/doc/abcd.Rmd | 8 behaviorchange-0.2.1/behaviorchange/inst/doc/abcd.html | 12 behaviorchange-0.2.1/behaviorchange/inst/doc/matrix-van-aspecten-van-de-psychologie.Rmd | 10 behaviorchange-0.2.1/behaviorchange/inst/doc/matrix-van-aspecten-van-de-psychologie.html | 6 behaviorchange-0.2.1/behaviorchange/man/CIBER.Rd | 69 - behaviorchange-0.2.1/behaviorchange/man/CIBERlite.Rd |only behaviorchange-0.2.1/behaviorchange/man/abcd.Rd | 32 behaviorchange-0.2.1/behaviorchange/man/abcd_specs_examples.Rd | 13 behaviorchange-0.2.1/behaviorchange/man/behaviorchange-package.Rd | 28 behaviorchange-0.2.1/behaviorchange/man/partypanelData.Rd |only behaviorchange-0.2.1/behaviorchange/vignettes/abcd-laagdrempelige_nederlandse_uitleg.Rmd | 6 behaviorchange-0.2.1/behaviorchange/vignettes/abcd.Rmd | 8 behaviorchange-0.2.1/behaviorchange/vignettes/matrix-van-aspecten-van-de-psychologie.Rmd | 10 37 files changed, 749 insertions(+), 435 deletions(-)
More information about behaviorchange at CRAN
Permanent link
Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre],
Juniper Simonis [aut],
Lisa Madsen [aut],
Manuela Huso [aut],
Paul Rabie [aut],
Jeffrey Mintz [aut],
Robert Wolpert [aut],
Jared Studyvin [aut],
Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@usgs.gov>
Diff between GenEst versions 1.3.0 dated 2019-07-18 and 1.3.1 dated 2019-08-22
DESCRIPTION | 8 - MD5 | 26 +-- NAMESPACE | 1 R/GenEst.R | 2 R/app_update_rv.R | 2 R/mortality_functions.R | 6 R/searcher_efficiency_functions.R | 151 ++++++++++++++-------- inst/doc/GenEstGUI.html | 4 inst/doc/command-line-example.html | 148 +++++++++++----------- inst/doc/solar-examples.html | 36 ++--- inst/doc/wind-examples.Rmd | 3 inst/doc/wind-examples.html | 243 ++++++++++++++++++------------------- man/pkm.Rd | 27 +++- vignettes/wind-examples.Rmd | 3 14 files changed, 364 insertions(+), 296 deletions(-)
Title: Quantitative Analysis Made Accessible
Description: This is a new version of the 'userfriendlyscience' package,
which has grown a bit unwieldy. Therefore, distinct functionalities
are being 'consciously uncoupled' into different packages. This package
contains the general-purpose tools and utilities (see the
'behaviorchange' package, the 'rosetta' package, and the
soon-to-be-released 'scd' package for other functionality), and
is the most direct 'successor' of the original 'userfriendlyscience' package.
For example, this package contains a number of basic functions to create
higher level plots, such as diamond plots, to easily plot sampling
distributions, to generate confidence intervals, to plan study sample sizes
for confidence intervals, and to do some basic operations such as
(dis)attenuate effect size estimates.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between ufs versions 0.3.0 dated 2019-07-22 and 0.3.1 dated 2019-08-22
DESCRIPTION | 15 - MD5 | 24 +- NAMESPACE | 1 R/CIM.R | 382 ++++++++++++++++++++++++++++++++------ R/associationMatrix.R | 31 ++- R/associationsToDiamondPlotDf.R | 3 R/scaleStructure.R | 12 - build/partial.rdb |binary build/vignette.rds |only inst/doc |only inst/partials/_CIM.Rmd |only inst/partials/_scaleStructure.Rmd | 2 man/CIM.Rd | 42 +++- vignettes |only 14 files changed, 424 insertions(+), 88 deletions(-)
Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution. The first model 'MGHD' (Browne and McNicholas (2015) <doi:10.1002/cjs.11246>) is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' (Tortora et al. (2016) <doi:10.1007/s11634-015-0204-z>) is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD'(Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>) is a 'MSGHD' with convex contour plots. The 'MCGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora [aut, cre, cph], Aisha ElSherbiny [com], Ryan P. Browne [aut, cph], Brian C. Franczak [aut, cph], and Paul D. McNicholas [aut, cph], and Donald D. Amos [ctb].
Maintainer: Cristina Tortora <grikris1@gmail.com>
Diff between MixGHD versions 2.3.2 dated 2019-04-12 and 2.3.3 dated 2019-08-22
MixGHD-2.3.2/MixGHD/data/datalist |only MixGHD-2.3.3/MixGHD/DESCRIPTION | 8 ++++---- MixGHD-2.3.3/MixGHD/MD5 | 29 ++++++++++++++--------------- MixGHD-2.3.3/MixGHD/NAMESPACE | 25 ++++++++++++++----------- MixGHD-2.3.3/MixGHD/R/GHD.R | 18 +++++++++++------- MixGHD-2.3.3/MixGHD/R/MSGHD.R | 11 ++++++----- MixGHD-2.3.3/MixGHD/R/cMSGHD.R | 11 ++++++----- MixGHD-2.3.3/MixGHD/R/rfunctions.R | 2 +- MixGHD-2.3.3/MixGHD/man/DA.Rd | 2 +- MixGHD-2.3.3/MixGHD/man/MCGHD.Rd | 8 ++++---- MixGHD-2.3.3/MixGHD/man/MGHD.Rd | 8 ++++---- MixGHD-2.3.3/MixGHD/man/MGHFA.Rd | 2 +- MixGHD-2.3.3/MixGHD/man/MSGHD.Rd | 8 ++++---- MixGHD-2.3.3/MixGHD/man/cMSGHD.Rd | 8 ++++---- MixGHD-2.3.3/MixGHD/man/coef.Rd | 11 +++++++---- MixGHD-2.3.3/MixGHD/man/predict.Rd | 11 +++++++---- 16 files changed, 88 insertions(+), 74 deletions(-)
Title: Annotation of Metabolites from Liquid Chromatography-Mass
Spectrometry Data
Description: Automatic metabolite annotation from Liquid Chromatography-Mass Spectrometry (LC-MS and LC-MS/MS DIA) analysis.
Author: Manuel David Peris Diaz
Maintainer: Manuel David Peris Diaz <manuel.perisdiaz@uwr.edu.pl>
Diff between MetaboList versions 1.4 dated 2019-06-04 and 2.0 dated 2019-08-22
DESCRIPTION | 6 MD5 | 18 + R/AIF.R | 469 ++++++----------------------------------------- R/Filter_AIF.R | 109 +++------- R/FullMS.R | 9 R/Isotopic.R |only R/elemental.formula.R |only man/AIF.rd | 9 man/Filter_AIF.rd | 9 man/FullMS.rd | 10 - man/Isotopic.rd |only man/elemental.formula.rd |only 12 files changed, 130 insertions(+), 509 deletions(-)
Title: PD-Clustering and Factor PD-Clustering
Description: Probabilistic distance clustering (PD-clustering) is an iterative, distribution free, probabilistic clustering method. PD-clustering assigns units to a cluster according to their probability of membership, under the constraint that the product of the probability and the distance of each point to any cluster centre is a constant. PD-clustering is a flexible method that can be used with non-spherical clusters, outliers, or noisy data. PDQ is an extension of the algorithm for clusters of different size. Factor PD-clustering (FPDC) is a recently proposed factor clustering method that involves a linear transformation of variables and a cluster optimizing the PD-clustering criterion. It works on high dimensional datasets.
Author: Cristina Tortora [aut, cre, cph], Noe Vidales [aut], and Paul D. McNicholas [fnd]
Maintainer: Cristina Tortora <grikris1@gmail.com>
Diff between FPDclustering versions 1.3 dated 2019-04-12 and 1.3.1 dated 2019-08-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- data/datalist | 1 - 3 files changed, 6 insertions(+), 7 deletions(-)
Title: Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted
Analysis
Description: Paired mass distance (PMD) analysis proposed in Yu, Olkowicz and Pawliszyn (2018) <doi:10.1016/j.aca.2018.10.062> for gas/liquid chromatography–mass spectrometry (GC/LC-MS) based non-targeted analysis. PMD analysis including GlobalStd algorithm and structure/reaction directed analysis. GlobalStd algorithm could found independent peaks in m/z-retention time profiles based on retention time hierarchical cluster analysis and frequency analysis of paired mass distances within retention time groups. Structure directed analysis could be used to find potential relationship among those independent peaks in different retention time groups based on frequency of paired mass distances. A GUI for PMD analysis is also included as a 'shiny' application.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>)
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between pmd versions 0.1.1 dated 2018-12-02 and 0.1.5 dated 2019-08-22
DESCRIPTION | 16 MD5 | 61 - NAMESPACE | 9 NEWS.md | 39 R/data.R | 50 + R/pmd.R | 1947 +++++++++++++++++++++++++++++------------------- R/pmdvis.R |only README.md | 10 build/vignette.rds |binary data/datalist |only data/hmdb.rda |only data/hmdbp.rda |only data/keggrall.rda |only data/omics.rda |only data/spmeinvivo.rda |binary inst/doc/globalstd.R | 59 + inst/doc/globalstd.Rmd | 110 ++ inst/doc/globalstd.html | 405 +++++++-- man/getchain.Rd |only man/getcluster.Rd |only man/getcorcluster.Rd |only man/getpaired.Rd | 10 man/getpmd.Rd |only man/getrda.Rd |only man/getreact.Rd |only man/getsda.Rd | 11 man/getstd.Rd | 8 man/gettarget.Rd |only man/globalstd.Rd | 10 man/hmdb.Rd |only man/hmdbp.Rd |only man/keggrall.Rd |only man/omics.Rd |only man/pcasf.Rd |only man/plotpaired.Rd | 4 man/plotrtg.Rd | 4 man/plotsda.Rd |only man/plotstd.Rd | 4 man/plotstdrt.Rd | 4 man/plotstdsda.Rd | 4 vignettes/globalstd.Rmd | 110 ++ 41 files changed, 1956 insertions(+), 919 deletions(-)
Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).
Author: Gregory Jefferis [aut, cre] (<https://orcid.org/0000-0002-0587-9355>),
James Manton [aut] (<https://orcid.org/0000-0001-9260-3156>)
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between nat versions 1.8.11 dated 2017-11-12 and 1.8.13 dated 2019-08-22
DESCRIPTION | 26 MD5 | 222 +- NAMESPACE | 4 NEWS | 22 R/cmtk.R | 57 R/cmtkreg.R | 2 R/dotprops.R | 14 R/nat-package.R | 223 +- R/neuron-plot.R | 44 R/neuronlist.R | 19 R/neuronlistfh.R | 17 R/summary.R | 7 R/vaa3draw-io.R | 2 README.md | 20 build/vignette.rds |binary inst/doc/Installation.Rmd | 20 inst/doc/Installation.html | 339 +++ inst/doc/neurons-intro.Rmd | 14 inst/doc/neurons-intro.html | 2439 ++++++++++++++++++++------ man/Cell07PNs.Rd | 1 man/MBL.surf.Rd | 1 man/affmat2cmtkparams.Rd | 1 man/all.equal.im3d.Rd | 4 man/all.equal.neuron.Rd | 4 man/amiramesh-io.Rd | 6 man/amiratype.Rd | 1 man/as.hxsurf.Rd | 1 man/as.im3d.Rd | 4 man/as.mesh3d.Rd | 1 man/as.neuronlist.Rd | 3 man/boundingbox.Rd | 7 man/cmtk.bindir.Rd | 60 man/cmtk.dof2mat.Rd | 2 man/cmtk.extract_affine.Rd | 1 man/cmtk.mat2dof.Rd | 2 man/cmtk.targetvolume.Rd | 2 man/cmtkparams2affmat.Rd | 1 man/cmtkreg.Rd | 2 man/coord2ind.Rd | 4 man/dotprops.Rd | 6 man/fileformats.Rd | 7 man/find.neuron.Rd | 4 man/graph.nodes.Rd | 4 man/im3d-coords.Rd | 1 man/im3d-io.Rd | 1 man/im3d.Rd | 1 man/imexpand.grid.Rd | 1 man/imscalebar.Rd | 5 man/imslice.Rd | 1 man/is.amiramesh.Rd | 1 man/is.im3d.Rd | 1 man/is.neuronlist.Rd | 1 man/is.vaa3draw.Rd | 2 man/kcs20.Rd | 1 man/mask.Rd | 1 man/materials.Rd | 3 man/mirror.Rd | 8 man/nat-package.Rd | 205 +- man/ndigest.Rd | 4 man/neuron.Rd | 1 man/neuronlist-arithmetic.Rd | 1 man/neuronlist-dataframe-methods.Rd | 2 man/neuronlist.Rd | 1 man/neuronlistfh.Rd | 9 man/ngraph.Rd | 5 man/nlapply.Rd | 5 man/normalise_swc.Rd | 10 man/nview3d.Rd |only man/origin.Rd | 1 man/plot.neuron.Rd | 8 man/plot.neuronlist.Rd | 5 man/plot3d.hxsurf.Rd | 1 man/plot3d.neuronlist.Rd | 3 man/pointsinside.Rd | 4 man/potential_synapses.Rd | 5 man/projection.Rd | 1 man/prune.Rd | 1 man/read.cmtk.Rd | 1 man/read.cmtkreg.Rd | 1 man/read.hxsurf.Rd | 2 man/read.neuronlistfh.Rd | 1 man/read.neurons.Rd | 6 man/read.nrrd.Rd | 5 man/read.vaa3draw.Rd | 3 man/remotesync.Rd | 1 man/resample.Rd | 1 man/rootpoints.Rd | 3 man/scale.neuron.Rd | 2 man/segmentgraph.Rd | 5 man/spine.Rd | 5 man/sub-.neuronlistfh.Rd | 1 man/subset.hxsurf.Rd | 5 man/subset.neuron.Rd | 1 man/summary.neuron.Rd | 3 man/threshold.Rd | 5 man/unmask.Rd | 1 man/voxdims.Rd | 1 man/write.cmtk.Rd | 1 man/write.cmtkreg.Rd | 1 man/write.hxsurf.Rd | 2 man/write.neuronlistfh.Rd | 1 man/write.neurons.Rd | 5 man/write.nrrd.Rd | 4 man/xform.Rd | 13 man/xformimage.Rd | 4 tests/testthat/test-landmarks-io.R | 2 tests/testthat/test-ndigest.R | 7 tests/testthat/test-ngraph.R | 2 tests/testthat/test-pop3d.R | 10 tests/testthat/test-summary.R | 3 tests/testthat/testdata/summary_cell07pns.rda |only vignettes/Installation.Rmd | 20 vignettes/neurons-intro.Rmd | 14 113 files changed, 2936 insertions(+), 1126 deletions(-)
Title: TDT Tests for Extended Haplotypes
Description: Functions and examples are provided for Transmission/disequilibrium tests
for extended marker haplotypes, as in
Clayton, D. and Jones, H. (1999) "Transmission/disequilibrium tests
for extended marker haplotypes". Amer. J. Hum. Genet., 65:1161-1169,
<doi:10.1086/302566>.
Author: David Clayton
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between tdthap versions 1.1-9 dated 2018-06-30 and 1.1-11 dated 2019-08-22
ChangeLog | 8 ++++++++ DESCRIPTION | 10 ++++++---- MD5 | 12 ++++++------ R/tdthap.R | 2 +- build/vignette.rds |binary inst/doc/tdthap-paper.pdf |binary src/nuc_fam.c | 6 +++--- 7 files changed, 24 insertions(+), 14 deletions(-)
Title: Gillespie's Stochastic Simulation Algorithm for Impatient People
Description: A fast, scalable, and versatile framework for simulating large
systems with Gillespie's Stochastic Simulation Algorithm ('SSA').
This package is the spiritual successor to the 'GillespieSSA' package
originally written by Mario Pineda-Krch. Benefits of this package
include major speed improvements (>100x), easier to understand documentation,
and many unit tests that try to ensure the package works as intended.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between GillespieSSA2 versions 0.2.4 dated 2019-08-05 and 0.2.5 dated 2019-08-22
GillespieSSA2-0.2.4/GillespieSSA2/inst/NEWS |only GillespieSSA2-0.2.4/GillespieSSA2/inst/NEWS.md |only GillespieSSA2-0.2.5/GillespieSSA2/DESCRIPTION | 20 ++- GillespieSSA2-0.2.5/GillespieSSA2/MD5 | 55 ++++------ GillespieSSA2-0.2.5/GillespieSSA2/NAMESPACE | 3 GillespieSSA2-0.2.5/GillespieSSA2/NEWS.md |only GillespieSSA2-0.2.5/GillespieSSA2/R/RcppExports.R | 4 GillespieSSA2-0.2.5/GillespieSSA2/R/compile_reactions.R | 53 ++------- GillespieSSA2-0.2.5/GillespieSSA2/R/ssa_simulation.R | 6 - GillespieSSA2-0.2.5/GillespieSSA2/README.md | 27 ++-- GillespieSSA2-0.2.5/GillespieSSA2/build/partial.rdb |binary GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/an_introduction.html | 4 GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/converting_from_GillespieSSA.Rmd | 2 GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/converting_from_GillespieSSA.html | 10 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/decaying_dimer.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/epi_chain.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/linear_chain.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/logistic_growth.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/lotka_predator_prey.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/radioactive_decay.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/rm_predator_prey.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/inst/doc/sir.html | 6 - GillespieSSA2-0.2.5/GillespieSSA2/man/compile_reactions.Rd | 8 - GillespieSSA2-0.2.5/GillespieSSA2/src/RcppExports.cpp | 11 -- GillespieSSA2-0.2.5/GillespieSSA2/src/ode_em.cpp | 2 GillespieSSA2-0.2.5/GillespieSSA2/src/ssa_simulation.cpp | 14 +- GillespieSSA2-0.2.5/GillespieSSA2/src/test_helper_funs.cpp | 10 + GillespieSSA2-0.2.5/GillespieSSA2/tests/testthat/helper-test_propensity.R | 3 GillespieSSA2-0.2.5/GillespieSSA2/tests/testthat/test-ssa.R | 2 GillespieSSA2-0.2.5/GillespieSSA2/vignettes/converting_from_GillespieSSA.Rmd | 2 30 files changed, 129 insertions(+), 155 deletions(-)
Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' charts interactively with drag-and-drop to map your variables.
You can quickly visualize your data accordingly to their type, export to 'PNG' or 'PowerPoint',
and retrieve the code to reproduce the chart.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Ian Carroll [ctb] (Facets support)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between esquisse versions 0.2.1 dated 2019-07-01 and 0.2.2 dated 2019-08-22
esquisse-0.2.1/esquisse/R/module_filterDF.R |only esquisse-0.2.2/esquisse/DESCRIPTION | 6 esquisse-0.2.2/esquisse/MD5 | 41 - esquisse-0.2.2/esquisse/NAMESPACE | 4 esquisse-0.2.2/esquisse/NEWS.md | 27 esquisse-0.2.2/esquisse/R/esquisser.R | 2 esquisse-0.2.2/esquisse/R/esquisserUI.R | 140 ++++- esquisse-0.2.2/esquisse/R/input-colors.R |only esquisse-0.2.2/esquisse/R/input-dragula.R | 80 -- esquisse-0.2.2/esquisse/R/module-chartControls.R | 21 esquisse-0.2.2/esquisse/R/module-filterDF.R |only esquisse-0.2.2/esquisse/R/utils.R | 81 ++ esquisse-0.2.2/esquisse/build/vignette.rds |binary esquisse-0.2.2/esquisse/inst/doc/get-started.html | 6 esquisse-0.2.2/esquisse/inst/doc/shiny-usage.R | 128 +++- esquisse-0.2.2/esquisse/inst/doc/shiny-usage.Rmd | 171 +++++- esquisse-0.2.2/esquisse/inst/doc/shiny-usage.html | 275 ++++++---- esquisse-0.2.2/esquisse/man/input-colors.Rd |only esquisse-0.2.2/esquisse/man/module-esquisse.Rd | 77 ++ esquisse-0.2.2/esquisse/man/module-filterDF.Rd | 2 esquisse-0.2.2/esquisse/vignettes/figures/input-color.png |only esquisse-0.2.2/esquisse/vignettes/figures/input-palette.png |only esquisse-0.2.2/esquisse/vignettes/figures/shiny-esquisse-out.png |only esquisse-0.2.2/esquisse/vignettes/figures/shiny-esquisse.png |binary esquisse-0.2.2/esquisse/vignettes/shiny-usage.Rmd | 171 +++++- 25 files changed, 892 insertions(+), 340 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 0.8.5 dated 2019-04-25 and 1.0.0 dated 2019-08-22
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Title: Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'.
'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API.
'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Juned Chhipa [cph] (apexcharts.js library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between apexcharter versions 0.1.1 dated 2019-07-28 and 0.1.2 dated 2019-08-22
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS.md | 12 ++ README.md | 9 +- inst/doc/labs.html | 31 ++++--- inst/doc/lines.html | 51 ++++++------ inst/doc/starting-with-apexcharts.html | 75 +++++++++--------- inst/htmlwidgets/apexcharter.js | 3 inst/htmlwidgets/apexcharter.yaml | 2 inst/htmlwidgets/lib/apexcharts-3.8/apexcharts.min.js | 4 10 files changed, 119 insertions(+), 92 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph] (<https://orcid.org/0000-0002-2140-5352>),
George Athanasopoulos [aut],
Christoph Bergmeir [aut] (<https://orcid.org/0000-0002-3665-9021>),
Gabriel Caceres [aut],
Leanne Chhay [aut],
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Fotios Petropoulos [aut] (<https://orcid.org/0000-0003-3039-4955>),
Slava Razbash [aut],
Earo Wang [aut],
Farah Yasmeen [aut] (<https://orcid.org/0000-0002-1479-5401>),
R Core Team [ctb, cph],
Ross Ihaka [ctb, cph],
Daniel Reid [ctb],
David Shaub [ctb],
Yuan Tang [ctb] (<https://orcid.org/0000-0001-5243-233X>),
Zhenyu Zhou [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 8.8 dated 2019-08-02 and 8.9 dated 2019-08-22
DESCRIPTION | 9 MD5 | 34 +-- NEWS.md | 6 R/ggplot.R | 2 R/mstl.R | 4 R/nnetar.R | 4 R/simulate.R | 6 inst/doc/JSS2008.R | 77 +++++++ inst/doc/JSS2008.Rmd | 97 +++++++--- inst/doc/JSS2008.pdf |binary man/mstl.Rd | 4 tests/testthat/test-accuracy.R | 5 tests/testthat/test-newarima2.R | 5 vignettes/JSS2008.Rmd | 97 +++++++--- vignettes/JSS2008_files/figure-latex/arima-auto-fcast-1.pdf |binary vignettes/JSS2008_files/figure-latex/arimaexamples-1.pdf |binary vignettes/JSS2008_files/figure-latex/ets-usnetelec-fcast-1.pdf |binary vignettes/JSS2008_files/figure-latex/etsexamples-1.pdf |binary 18 files changed, 264 insertions(+), 86 deletions(-)
Title: Discovery of Motifs in Spatial-Time Series
Description: Allow to identify motifs in spatial-time series. A motif is a previously unknown subsequence of a (spatial) time series with relevant number of occurrences. For this purpose, the Combined Series Approach (CSA) is used.
Author: Heraldo Borges [aut, cre] (CEFET/RJ),
Amin Bazaz [aut] (Polytech'Montpellier),
Luciana Escobar [aut] (CEFET/RJ),
Esther Pacitti [aut] (CEFET/RJ),
Eduardo Ogasawara [aut] (CEFET/RJ)
Maintainer: Heraldo Borges <stmotif@eic.cefet-rj.br>
Diff between STMotif versions 1.0.2 dated 2019-02-11 and 1.0.3 dated 2019-08-22
DESCRIPTION | 16 ++++++++++------ MD5 | 6 +++--- README.md | 5 +++-- inst/doc/examples.html | 4 ++-- 4 files changed, 18 insertions(+), 13 deletions(-)
Title: Number and Brightness Image Analysis
Description: Calculation of molecular number and brightness from
fluorescence microscopy image series. The software was published in a
2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for
the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>.
A review of the technique was published in 2017
<doi:10.1016/j.ymeth.2017.12.001>.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between nandb versions 2.0.4 dated 2019-07-08 and 2.0.5 dated 2019-08-22
DESCRIPTION | 66 ++++++++++++++++++++---------------- MD5 | 16 ++++---- NEWS.md | 6 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/batch-mode.html | 10 +++-- inst/doc/brightness-timeseries.html | 8 +++- inst/doc/single-images.html | 12 ++++-- tests/testthat/test-number.R | 11 ------ 9 files changed, 73 insertions(+), 56 deletions(-)
More information about DoE.multi.response at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-21 0.1.5
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Documentation about 'units' is provided in the paper by Pebesma, Mailund &
Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a
vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.6-3 dated 2019-05-03 and 0.6-4 dated 2019-08-22
DESCRIPTION | 6 - MD5 | 34 +++++----- NAMESPACE | 2 NEWS.md | 8 ++ R/deprecated.R | 2 R/make_units.R | 8 -- R/summaries.R | 6 + R/sysdata.rda |binary R/user_conversion.R | 26 ++++++-- R/valid_udunits.R | 19 ++++- build/vignette.rds |binary configure | 18 ++--- inst/doc/measurement_units_in_R.html | 14 +--- inst/doc/units.html | 110 +++++++++++++++++----------------- tests/testthat/test_misc.R | 4 - tests/testthat/test_summaries.R | 4 - tests/testthat/test_udunits.R | 1 tests/testthat/test_user_conversion.R | 14 ++++ 18 files changed, 165 insertions(+), 111 deletions(-)
Title: Data Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Data menu includes interfaces for loading, saving,
viewing, visualizing, summarizing, transforming, and combining data. It also
contains functionality to generate reproducible reports of the analyses
conducted in the application.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.data versions 1.0.0 dated 2019-07-18 and 1.0.6 dated 2019-08-22
DESCRIPTION | 11 +-- MD5 | 28 ++++---- NEWS.md | 31 +++++++-- R/manage.R | 22 +++--- R/radiant.R | 3 inst/app/global.R | 55 +++++++++++++---- inst/app/init.R | 25 +++---- inst/app/radiant.R | 53 ++++++++-------- inst/app/rsconnect/shinyapps.io/vnijs/radiant-data.dcf | 5 - inst/app/tools/app/report_r.R | 2 inst/app/tools/app/report_rmd.R | 16 +--- inst/app/tools/data/manage_ui.R | 26 ++++---- inst/app/tools/data/transform_ui.R | 4 - inst/app/www/js/run_return.js | 7 ++ man/fix_names.Rd | 4 - 15 files changed, 178 insertions(+), 114 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-21 0.2.2
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 3.0.7 dated 2019-04-12 and 3.0.8 dated 2019-08-22
DESCRIPTION | 6 MD5 | 50 +++---- NEWS | 13 ++ R/layout.R | 1 R/node.labs.R | 4 R/palette.R | 26 ++-- R/rpart.rules.R | 38 +++-- inst/doc/prp.pdf |binary inst/slowtests/rpart.report.Rout.save | 193 +++++++++++++++--------------- inst/slowtests/rpart.report.bat | 2 inst/slowtests/test.describe.col.bat | 2 inst/slowtests/test.imports.bat | 2 inst/slowtests/test.na.bat | 2 inst/slowtests/test.palette.R | 48 +++++++ inst/slowtests/test.palette.Rout.save | 74 +++++++++++ inst/slowtests/test.palette.bat | 2 inst/slowtests/test.prp.Rout.save | 4 inst/slowtests/test.rpart.plot.Rout.save | 10 - inst/slowtests/test.rpart.plot.bat | 2 inst/slowtests/test.rpart.rules.R | 2 inst/slowtests/test.rpart.rules.Rout.save | 134 +++++++++----------- inst/slowtests/test.rpart.rules.bat | 2 inst/slowtests/test.type5.bat | 2 inst/slowtests/usersplits.bat | 2 inst/slowtests/vignette.bat | 2 inst/slowtests/webpage.figs.bat | 2 26 files changed, 387 insertions(+), 238 deletions(-)
Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services
<https://aws.amazon.com>, including storage, database, and compute
services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL'
database, and 'Lambda' functions-as-a-service.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws versions 0.1.3 dated 2019-07-28 and 0.1.4 dated 2019-08-22
DESCRIPTION | 26 +++++++++++++------------- MD5 | 9 +++++---- NEWS.md |only R/paws.R | 4 ++-- man/acm.Rd | 2 +- man/kms.Rd | 2 +- 6 files changed, 22 insertions(+), 21 deletions(-)
Title: GC/LC-MS Data Analysis for Environmental Science
Description: Gas/Liquid Chromatography-Mass Spectrometer(GC/LC-MS) Data Analysis for Environmental Science. This package covered topics such molecular isotope ratio, matrix effects and Short-Chain Chlorinated Paraffins analysis etc. in environmental analysis.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>),
Thanh Wang [ctb] (<https://orcid.org/0000-0002-5729-1908>)
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between enviGCMS versions 0.5.5 dated 2019-05-14 and 0.5.7 dated 2019-08-22
DESCRIPTION | 8 +++---- MD5 | 45 +++++++++++++++++++++++-------------------- NAMESPACE | 2 + NEWS.md | 12 +++++++++++ R/general.R | 5 ++-- R/getmzrt.R | 10 +++++---- R/io.R | 9 ++++---- R/mda.R | 53 +++++++++++++++++++++++++++++++++++++++++++-------- R/plotmzrt.R | 19 ++++++++++-------- data/TBBPA.rda |only data/list.rda |binary inst/doc/GCMSDA.html | 8 +++++-- man/TBBPA.Rd |only man/findmet.Rd |only man/findohc.Rd | 2 - man/getcsv.Rd | 2 + man/getmzrtcsv.Rd | 2 - man/gifmr.Rd | 2 + man/plotden.Rd | 6 +++-- man/plothm.Rd | 2 - man/plotpca.Rd | 2 - man/plotridges.Rd | 2 - man/plotrla.Rd | 2 - man/plotrtms.Rd | 4 ++- man/writeMSP.Rd | 2 + 25 files changed, 137 insertions(+), 62 deletions(-)
Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre],
Joshua Bowden [ctb],
Ryan Stephenson [ctb],
Hyun Kang [ctb],
Noah Zaitlen [ctb],
Claire Wade [ctb],
Andrew Kirby [ctb],
David Heckerman [ctb],
Mark Daly [ctb],
Eleazar Eskin [ctb]
Maintainer: Andrew George <andrew.george@csiro.au>
Diff between Eagle versions 1.5.1 dated 2019-05-24 and 1.5.2 dated 2019-08-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/FPR4AM.R | 2 +- R/onAttach.R | 2 +- src/calculate_a_and_vara_rcpp.cpp | 8 +++++--- 5 files changed, 14 insertions(+), 12 deletions(-)