Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: PORD, METIS, SCOTCH.
MUMPS method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [ctb],
Jean-Yves L'Excellent [ctb],
Stephane Pralet [ctb],
Chiara Puglisi [ctb],
Francois-Henry Rouet [ctb],
Wissam Sid-Lakhdar [ctb],
Tzvetomila Slavova [ctb],
Bora Ucar [ctb],
Clement Weisbecker [ctb],
Juergen Schulze [ctb],
George Karypis [ctb],
Douglas C. Schmidt [ctb],
Isamu Hasegawa [ctb],
Alexander Chemeris [ctb],
Makoto Matsumoto [ctb],
Takuji Nishimura [ctb],
Francois Pellegrini [ctb],
David Goudin [ctb],
Pascal Henon [ctb],
Pierre Ramet [ctb],
Sebastien Fourestier [ctb],
Jun-Ho Her [ctb],
Cedric Chevalier [ctb],
Timothy A. Davis [ctb],
Iain S. Duff [ctb],
John K. Reid [ctb],
Richard Stallman [ctb],
Samuel Thibault [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.1.2-6 dated 2019-04-25 and 5.2.1-4 dated 2019-08-23
rmumps-5.1.2-6/rmumps/src/lib/MUMPS_5.1.2 |only rmumps-5.2.1-4/rmumps/DESCRIPTION | 11 rmumps-5.2.1-4/rmumps/MD5 | 592 +++++----- rmumps-5.2.1-4/rmumps/NAMESPACE | 17 rmumps-5.2.1-4/rmumps/NEWS | 34 rmumps-5.2.1-4/rmumps/R/RcppExports.R | 4 rmumps-5.2.1-4/rmumps/inst/COPYRIGHTS | 2 rmumps-5.2.1-4/rmumps/man/get_cnst.Rd | 1 rmumps-5.2.1-4/rmumps/man/rmumps-package.Rd | 4 rmumps-5.2.1-4/rmumps/src/Makevars | 8 rmumps-5.2.1-4/rmumps/src/Makevars.seq | 8 rmumps-5.2.1-4/rmumps/src/get_cnst.cpp | 2 rmumps-5.2.1-4/rmumps/src/lib/MUMPS_5.2.1 |only rmumps-5.2.1-4/rmumps/src/lib/Makefile | 5 rmumps-5.2.1-4/rmumps/src/lib/metis-5.1.0/include/metis.h | 2 rmumps-5.2.1-4/rmumps/src/lib/metis-5.1.0/libmetis/frename.c | 8 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/Makefile.inc | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/Makefile.inc.rmumps | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/arch_build.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/arch_deco.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/arch_tleaf.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/bgraph_bipart_bd.c | 8 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/bgraph_bipart_df_loop.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/common.h | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/common_integer.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/dummysizes.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/graph_coarsen.c | 10 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/graph_coarsen_edge.c | 12 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/graph_io_habo.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/graph_match.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/graph_match_scan.c | 25 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/hgraph_induce.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/hgraph_induce_edge.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/hgraph_order_cp.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/hmesh_order_cp.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_band.c | 8 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_cp.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_df_loop.c | 18 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_ex.c | 5 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_fm.c | 26 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_ml.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_rb.c | 18 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/kgraph_map_rb_map.c | 25 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/last_resort/parser_ll.c | 7 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_arch.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_coarsen.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_f.c | 8 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_map.c | 13 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_map_f.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_map_io.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_map_io_f.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_graph_map_view.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/library_parser_f.c | 8 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/mapping.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/mesh_io_habo.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/parser.c | 18 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/parser_ll.l | 3 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/vgraph_separate_bd.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/vgraph_separate_df.c | 6 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/vgraph_separate_gg.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/vmesh_separate_fm.c | 3 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/vmesh_separate_st.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/wgraph_check.c | 4 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/wgraph_part_fm.h | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/wgraph_part_rb.c | 2 rmumps-5.2.1-4/rmumps/src/lib/scotch_6.0.4/src/libscotch/wgraph_part_st.c | 2 rmumps-5.2.1-4/rmumps/tests/testthat/test_rmumps.R | 38 68 files changed, 595 insertions(+), 480 deletions(-)
Title: R Wrapper for the Energy Information Administration (EIA) API
Description: An R wrapper to allow the user to query categories and Series IDs, and import data, from the EIA's API <https://www.eia.gov/opendata/>.
Author: Matthew Brigida and others (see GitHub)
Maintainer: Matthew Brigida <mdbrigida@gmail.com>
Diff between EIAdata versions 0.0.3 dated 2015-03-10 and 0.0.5 dated 2019-08-23
DESCRIPTION | 18 ++++--- MD5 | 12 ++--- NAMESPACE | 2 R/source.R | 117 ++++++++++++++++++++++++++++++++++++++++--------- R/wngsr.R |only man/EIAdata-package.Rd | 21 ++++++-- man/getCatEIA.Rd | 52 +++++++++++++-------- man/wngsr.Rd |only 8 files changed, 162 insertions(+), 60 deletions(-)
Title: Methods Used in the Economic Complexity Literature
Description: A wrapper of different indices and networks commonly used in
Economic Complexity to explore bipartite relations such as countries and their
exported products. These methods are also useful for different kind of
relations such as countries and their spoken languages.
The functions within this package correspond to code implementations of the
equations described in Hausmann, et al. (2005) <doi:10.3386/w11905>,
Hausmann, et al. (2014) <doi:10.7551/mitpress/9647.001.0001>, and
Mariani, et al. (2015) <doi:10.1140/epjb/e2015-60298-7>.
Author: Mauricio Vargas [aut, cre, cph]
(<https://orcid.org/0000-0003-1017-7574>),
Carlo Bottai [ctb] (improved the eigenvalues calculation),
Diego Kozlowski [ctb] (provided initial RCA and proximity functions he
used for his thesis),
Mark Padgham [rev] (compared PRODY equations from different articles),
Nico Pintar [rev] (suggested improvements to special cases in
eigenvalues calculation),
The World Bank [dtc],
Open Trade Statistics [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between economiccomplexity versions 0.1.2 dated 2019-07-11 and 0.2 dated 2019-08-23
economiccomplexity-0.1.2/economiccomplexity/data/gdp_pc_2016.rda |only economiccomplexity-0.1.2/economiccomplexity/data/package_output_demo.rda |only economiccomplexity-0.1.2/economiccomplexity/data/services_trade_2016.rda |only economiccomplexity-0.1.2/economiccomplexity/man/complexity_measures.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/countries_position.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/gdp_pc_2016.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/networks.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/package_output_demo.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/productivity_levels.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/proximity.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/revealed_comparative_advantage.Rd |only economiccomplexity-0.1.2/economiccomplexity/man/services_trade_2016.Rd |only economiccomplexity-0.2/economiccomplexity/DESCRIPTION | 34 economiccomplexity-0.2/economiccomplexity/MD5 | 64 - economiccomplexity-0.2/economiccomplexity/NAMESPACE | 13 economiccomplexity-0.2/economiccomplexity/R/complexity_measures.R | 209 ++- economiccomplexity-0.2/economiccomplexity/R/countries_position.R | 271 ++-- economiccomplexity-0.2/economiccomplexity/R/networks.R | 275 ++-- economiccomplexity-0.2/economiccomplexity/R/productivity_levels.R | 181 +-- economiccomplexity-0.2/economiccomplexity/R/proximity.R | 272 ++-- economiccomplexity-0.2/economiccomplexity/R/revealed_comparative_advantage.R | 148 +- economiccomplexity-0.2/economiccomplexity/build/partial.rdb |binary economiccomplexity-0.2/economiccomplexity/build/vignette.rds |binary economiccomplexity-0.2/economiccomplexity/data/ec_gdp_pc_1962.rda |only economiccomplexity-0.2/economiccomplexity/data/ec_output_demo.rda |only economiccomplexity-0.2/economiccomplexity/data/ec_trade_1962.rda |only economiccomplexity-0.2/economiccomplexity/inst/doc/basic-usage.R | 142 +- economiccomplexity-0.2/economiccomplexity/inst/doc/basic-usage.Rmd | 171 +- economiccomplexity-0.2/economiccomplexity/inst/doc/basic-usage.html | 593 ++++------ economiccomplexity-0.2/economiccomplexity/man/ec_complexity_measures.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_countries_position.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_gdp_pc_1962.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_networks.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_output_demo.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_productivity_levels.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_proximity.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_rca.Rd |only economiccomplexity-0.2/economiccomplexity/man/ec_trade_1962.Rd |only economiccomplexity-0.2/economiccomplexity/tests/testthat/test-complexity_measures.R | 90 - economiccomplexity-0.2/economiccomplexity/tests/testthat/test-countries_position.R | 127 -- economiccomplexity-0.2/economiccomplexity/tests/testthat/test-networks.R | 72 - economiccomplexity-0.2/economiccomplexity/tests/testthat/test-productivity_levels.R | 89 - economiccomplexity-0.2/economiccomplexity/tests/testthat/test-proximity.R | 83 - economiccomplexity-0.2/economiccomplexity/tests/testthat/test-revealed_comparative_advantage.R | 52 economiccomplexity-0.2/economiccomplexity/vignettes/basic-usage.Rmd | 171 +- 45 files changed, 1455 insertions(+), 1602 deletions(-)
More information about economiccomplexity at CRAN
Permanent link
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like 'Codecov' <http://codecov.io> or
'Coveralls' <http://coveralls.io>. Code coverage is a measure of the amount of
code being exercised by a set of tests. It is an indirect measure of test
quality and completeness. This package is compatible with any testing
methodology or framework and tracks coverage of both R code and compiled
C/C++/FORTRAN code.
Author: Jim Hester [aut, cre],
Willem Ligtenberg [ctb],
Kirill Müller [ctb],
Henrik Bengtsson [ctb],
Steve Peak [ctb],
Kirill Sevastyanenko [ctb],
Jon Clayden [ctb],
Robert Flight [ctb],
Eric Brown [ctb],
Brodie Gaslam [ctb],
Will Beasley [ctb],
Robert Krzyzanowski [ctb],
Markus Wamser [ctb],
Karl Forner [ctb],
Gergely Daróczi [ctb],
Jouni Helske [ctb],
Kun Ren [ctb],
Jeroen Ooms [ctb],
Ken Williams [ctb],
Chris Campbell [ctb],
David Hugh-Jones [ctb],
Qin Wang [ctb],
Ivan Sagalaev [ctb, cph] (highlight.js library),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library)
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 3.3.0 dated 2019-08-06 and 3.3.1 dated 2019-08-23
DESCRIPTION | 6 MD5 | 22 NAMESPACE | 86 +-- NEWS.md | 8 R/trace_calls.R | 5 README.md | 4 build/vignette.rds |binary inst/doc/how_it_works.R | 70 +- inst/doc/how_it_works.html | 938 ++++++++++++++++++-------------------- tests/testthat.R | 6 tests/testthat/test-Compiled.R | 10 tests/testthat/test-trace_calls.R | 69 ++ 12 files changed, 638 insertions(+), 586 deletions(-)
Title: Lightweight and Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and
manipulated. Test files are R scripts interspersed with test commands, that
can be programmed over. Fully automated build-install-test sequence for
packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
configurable output printing. Compare computed output with output stored
with the package. Run tests in parallel. Extensible by other packages.
Report side effects.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 0.9.6 dated 2019-06-28 and 1.0.0 dated 2019-08-23
DESCRIPTION | 22 MD5 | 65 +- NAMESPACE | 10 NEWS | 19 R/expectations.R |only R/methods.R | 66 +- R/setup.R | 35 + R/tinytest.R | 936 +++++++++++++++++-------------------- R/utils.R |only README.md | 50 + build/vignette.rds |binary inst/doc/tinytest_examples.R |only inst/doc/tinytest_examples.Rnw |only inst/doc/tinytest_examples.pdf |only inst/doc/using_tinytest.R | 154 ++++-- inst/doc/using_tinytest.Rnw | 300 ++++++++++- inst/doc/using_tinytest.pdf |binary inst/tinytest/runs |only inst/tinytest/test_extensibility.R |only inst/tinytest/test_file.R | 22 inst/tinytest/test_tiny.R | 6 inst/tinytest/test_utils.R |only man/build_install_test.Rd | 19 man/exit_file.Rd |only man/expect_equal.Rd | 15 man/print.tinytest.Rd | 2 man/puppy.Rd |only man/register_tinytest_extension.Rd |only man/report_side_effects.Rd |only man/run_test_dir.Rd | 54 +- man/run_test_file.Rd | 40 + man/setup_tinytest.Rd | 4 man/test_package.Rd | 12 man/tinytest.Rd | 26 - man/tinytests.Rd | 7 man/using.Rd |only vignettes/test_se.R |only vignettes/tinytest_examples.Rnw |only vignettes/using_tinytest.Rnw | 300 ++++++++++- 39 files changed, 1431 insertions(+), 733 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.9 dated 2018-08-24 and 1.8.10 dated 2019-08-23
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- NAMESPACE | 7 ++++--- 3 files changed, 12 insertions(+), 11 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-23 1.0.0
Title: Signature Overrepresentation Analysis
Description: Pathway Analysis is the process of statistically linking observations on
the molecular level to biological processes or pathways on the systems(i.e.
organism, organ, tissue, cell) level.
Traditionally, pathway analysis methods regard pathways as collections of
single genes and treat all genes in a pathway as equally informative. This
can lead to identification of spurious pathways as statistically significant,
since components are often shared amongst pathways.
SIGORA seeks to avoid this pitfall by focusing on genes or gene-pairs
that are (as a combination) specific to a single pathway. In relying on
such pathway gene-pair signatures (Pathway-GPS), SIGORA inherently uses
the status of other genes in the experimental context to identify the most
relevant pathways.
The current version allows for pathway analysis of human and mouse datasets
and contains pre-computed Pathway-GPS data for pathways in the KEGG and
Reactome pathway repositories as well as mechanisms for extracting GPS for
user supplied repositories.
Author: Amir B.K. Foroushani, Fiona S.L. Brinkman, David J. Lynn
Maintainer: Amir Foroushani <sigora.dev@gmail.com>
Diff between sigora versions 3.0.1 dated 2018-09-28 and 3.0.5 dated 2019-08-23
DESCRIPTION | 28 ++++++++++++++++++++-------- MD5 | 30 ++++++++++++++++-------------- R/getGenes.R | 7 ++++--- R/getURL.R |only R/ora.R | 4 ++-- R/sigora.R | 6 +++--- data/idmap.rda |binary data/kegH.rda |binary data/kegM.rda |binary data/nciTable.rda |binary data/reaH.rda |binary data/reaM.rda |binary man/getGenes.Rd | 5 ++++- man/getURL.Rd |only man/ora.Rd | 5 ++++- man/sigora-package.Rd | 2 +- man/sigora.Rd | 14 +++++++++----- 17 files changed, 63 insertions(+), 38 deletions(-)
Title: Van Westendorp Price Sensitivity Meter Analysis
Description: An implementation of the van Westendorp Price
Sensitivity Meter in R, which is a survey-based approach
to analyze consumer price preferences and sensitivity
(van Westendorp 1976, isbn:9789283100386).
Author: Max Alletsee [aut, cre]
Maintainer: Max Alletsee <max.alletsee@gmail.com>
Diff between pricesensitivitymeter versions 1.0.1 dated 2019-04-29 and 1.1.1 dated 2019-08-23
DESCRIPTION | 8 +- MD5 | 42 +++++----- NEWS | 13 +++ R/psm_functions.R | 33 ++++---- R/psm_weighted_functions.R | 51 ++++++++---- README.md | 4 - build/vignette.rds |binary inst/doc/interpolation-in-small-samples.R | 62 +++++++-------- inst/doc/interpolation-in-small-samples.Rmd | 68 ++++++++--------- inst/doc/interpolation-in-small-samples.html | 107 +++++++++++++-------------- inst/doc/using-weighted-data.R | 2 inst/doc/using-weighted-data.Rmd | 2 inst/doc/using-weighted-data.html | 48 ++++++------ inst/doc/visualizing-psm-results.html | 16 ++-- man/psm_analysis.rd | 5 + man/psm_analysis_weighted.rd | 5 + tests/testthat/test_data_input.R | 24 ++++++ tests/testthat/test_data_input_weighted.R | 46 +++++++++++ tests/testthat/test_data_output.R | 72 +++++++++++++++++- tests/testthat/test_data_output_weighted.R | 10 ++ vignettes/interpolation-in-small-samples.Rmd | 68 ++++++++--------- vignettes/using-weighted-data.Rmd | 2 22 files changed, 442 insertions(+), 246 deletions(-)
More information about pricesensitivitymeter at CRAN
Permanent link
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Joan Capdevila Pujol [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.9-2 dated 2019-07-03 and 1.10-1 dated 2019-08-23
DESCRIPTION | 16 MD5 | 114 +-- NAMESPACE | 3 R/createConfigFile.R |only R/create_test_acc_csv.R | 2 R/create_test_sleeplog_csv.R | 2 R/g.IVIS.R |only R/g.analyse.R | 979 ++-------------------------- R/g.analyse.avday.R |only R/g.analyse.perday.R |only R/g.analyse.perfile.R |only R/g.applymetrics.R | 45 - R/g.calibrate.R | 15 R/g.dotorcomma.R | 53 - R/g.extractheadervars.R | 20 R/g.getM5L5.R | 88 +- R/g.getidfromheaderobject.R | 7 R/g.getmeta.R | 218 ++---- R/g.impute.R | 39 + R/g.inspectfile.R | 4 R/g.metric.R | 148 +--- R/g.part1.R | 531 +++++++++------ R/g.part2.R | 227 ++++-- R/g.part3.R | 125 ++- R/g.part4.R | 86 -- R/g.part5.R | 67 + R/g.plot5.R | 320 ++++----- R/g.readaccfile.R | 37 - R/g.report.part2.R | 11 R/g.report.part4.R | 3 R/g.report.part5.R | 2 R/g.shell.GGIR.R | 298 +++++--- R/g.sib.det.R | 96 +- build/vignette.rds |binary inst/NEWS.Rd | 19 inst/doc/GGIR.R | 5 inst/doc/GGIR.Rmd | 41 - inst/doc/GGIR.html | 459 +++++++++---- inst/testfiles |only man/GGIR-package.Rd | 4 man/createConfigFile.Rd |only man/g.IVIS.Rd |only man/g.analyse.Rd | 13 man/g.analyse.avday.Rd |only man/g.analyse.perday.Rd |only man/g.analyse.perfile.Rd |only man/g.applymetrics.Rd | 21 man/g.extractheadervars.Rd | 4 man/g.getM5L5.Rd | 6 man/g.getmeta.Rd | 5 man/g.impute.Rd | 10 man/g.metric.Rd | 15 man/g.part1.Rd | 54 + man/g.part2.Rd | 46 - man/g.part3.Rd | 5 man/g.part5.Rd | 8 man/g.shell.GGIR.Rd | 27 tests/testthat/test_chainof5parts.R | 191 ++++- tests/testthat/test_gbinread.R |only tests/testthat/test_gcwaread.R |only tests/testthat/test_gmetric.R |only tests/testthat/test_greadaccfile.R |only tests/testthat/test_gwavread.R |only tests/testthat/test_part1_with_allmetrics.R |only vignettes/GGIR.Rmd | 41 - 65 files changed, 2249 insertions(+), 2281 deletions(-)
Title: A Shiny App for UCSC Xena Database
Description: Provides a web app for downloading, analyzing and
visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of
UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE,
and others.
Author: Shixiang Wang [aut] (<https://orcid.org/0000-0001-9855-7357>),
Yi Xiong [aut] (<https://orcid.org/0000-0002-4370-9824>),
Longfei Zhao [aut] (<https://orcid.org/0000-0002-6277-0137>),
Kai Gu [aut, cre] (<https://orcid.org/0000-0002-0177-0774>),
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Kai Gu <gukai1212@163.com>
Diff between UCSCXenaShiny versions 0.2.0 dated 2019-07-10 and 0.3.0 dated 2019-08-23
DESCRIPTION | 73 LICENSE | 4 MD5 | 99 NAMESPACE | 32 NEWS.md | 47 R/GeomSplitViolin.R | 110 R/data.R | 112 R/get_pancan_value.R | 201 R/ope_pancan_value.R | 120 R/run.R | 56 R/utils-pipe.R | 32 R/vis_pancan_value.R | 363 R/xenashiny.R | 8 README.md | 130 inst/modules_apps |only inst/shinyapp/App.R | 880 - inst/shinyapp/modules |only inst/shinyapp/server |only inst/shinyapp/ui |only inst/shinyapp/www/bootstrap4.css | 704 inst/shinyapp/www/css/bootstrap-grid.css | 4098 ++--- inst/shinyapp/www/css/bootstrap-grid.min.css | 12 inst/shinyapp/www/css/bootstrap-reboot.css | 658 inst/shinyapp/www/css/bootstrap-reboot.min.css | 14 inst/shinyapp/www/css/bootstrap.css |17948 ++++++++++++------------- inst/shinyapp/www/css/bootstrap.min.css | 12 inst/shinyapp/www/js/bootstrap.bundle.js |12656 ++++++++--------- inst/shinyapp/www/js/bootstrap.bundle.min.js | 12 inst/shinyapp/www/js/bootstrap.js | 7788 +++++----- inst/shinyapp/www/js/bootstrap.min.js | 12 man/UCSCXenaShiny.Rd | 20 man/XenaInfo.Rd | 32 man/app_run.Rd | 32 man/available_hosts.Rd | 34 man/dat_datasets.Rd | 32 man/dat_samples.Rd | 32 man/get_pancan_value.Rd | 100 man/ope_toil_gene.Rd | 48 man/pipe.Rd | 24 man/tcga_gtex.Rd | 26 man/toil_info.Rd | 32 man/toil_surv.Rd | 32 man/vis_toil_TvsN.Rd | 70 man/vis_toil_gene.Rd | 94 tests/testthat.R | 8 tests/testthat/test-run_app.R | 2 tests/testthat/test-vis_pancan_value.R | 10 47 files changed, 23086 insertions(+), 23723 deletions(-)
Title: Record Linkage in R
Description: Provides functions for linking and de-duplicating data sets.
Methods based on a stochastic approach are implemented as well as
classification algorithms from the machine learning domain.
Author: Andreas Borg <andreas.borg.public@posteo.de>, Murat Sariyar <murat.sariyar@charite.de>
Maintainer: ORPHANED
Diff between RecordLinkage versions 0.4-11.1 dated 2019-05-28 and 0.4-11.2 dated 2019-08-23
DESCRIPTION | 10 MD5 | 11 man/RLdata.rd | 9 src/ph_ext.h | 37 +- src/phonet.c | 821 ++++++++++++++++++++++++++++++--------------------------- src/phonet.h | 574 +++++++++++++++++++++++---------------- src/umlaut_p.h |only 7 files changed, 821 insertions(+), 641 deletions(-)
Title: Compute Directly Standardized Rates, Ratios and Differences
Description: A set of functions to compute and compare directly standardized rates, rate differences and ratios. A variety of user defined options for analysis (e.g confidence intervals) and formatting are included.
Author: Matthew Kumar <mattkumar@gmail.com>
Maintainer: Matthew Kumar <mattkumar@gmail.com>
Diff between dsr versions 0.2.1 dated 2019-01-09 and 0.2.2 dated 2019-08-23
DESCRIPTION | 7 MD5 | 10 - R/dsrr.R | 2 build/vignette.rds |binary inst/doc/dsr.html | 465 +++++++++++++++++++++++++++++++++++++++------------- inst/doc/dsrre.html | 389 ++++++++++++++++++++++++++++++++++--------- 6 files changed, 672 insertions(+), 201 deletions(-)
Title: Access the 'Gmail' 'RESTful' API
Description: An interface to the 'Gmail' 'RESTful' API. Allows
access to your 'Gmail' messages, threads, drafts and labels.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between gmailr versions 0.7.1 dated 2016-04-11 and 1.0.0 dated 2019-08-23
gmailr-0.7.1/gmailr/man/attachment.Rd |only gmailr-0.7.1/gmailr/man/body.Rd |only gmailr-0.7.1/gmailr/man/create_draft.Rd |only gmailr-0.7.1/gmailr/man/create_label.Rd |only gmailr-0.7.1/gmailr/man/delete_label.Rd |only gmailr-0.7.1/gmailr/man/delete_message.Rd |only gmailr-0.7.1/gmailr/man/delete_thread.Rd |only gmailr-0.7.1/gmailr/man/draft.Rd |only gmailr-0.7.1/gmailr/man/drafts.Rd |only gmailr-0.7.1/gmailr/man/history.Rd |only gmailr-0.7.1/gmailr/man/id.Rd |only gmailr-0.7.1/gmailr/man/import_message.Rd |only gmailr-0.7.1/gmailr/man/insert_message.Rd |only gmailr-0.7.1/gmailr/man/label.Rd |only gmailr-0.7.1/gmailr/man/labels.Rd |only gmailr-0.7.1/gmailr/man/last_response.Rd |only gmailr-0.7.1/gmailr/man/message.Rd |only gmailr-0.7.1/gmailr/man/messages.Rd |only gmailr-0.7.1/gmailr/man/mime.Rd |only gmailr-0.7.1/gmailr/man/modify_message.Rd |only gmailr-0.7.1/gmailr/man/modify_thread.Rd |only gmailr-0.7.1/gmailr/man/save_attachment.Rd |only gmailr-0.7.1/gmailr/man/save_attachments.Rd |only gmailr-0.7.1/gmailr/man/send_draft.Rd |only gmailr-0.7.1/gmailr/man/send_message.Rd |only gmailr-0.7.1/gmailr/man/thread.Rd |only gmailr-0.7.1/gmailr/man/threads.Rd |only gmailr-0.7.1/gmailr/man/trash_message.Rd |only gmailr-0.7.1/gmailr/man/trash_thread.Rd |only gmailr-0.7.1/gmailr/man/untrash_message.Rd |only gmailr-0.7.1/gmailr/man/untrash_thread.Rd |only gmailr-0.7.1/gmailr/man/update_label.Rd |only gmailr-0.7.1/gmailr/tests/test-all.R |only gmailr-0.7.1/gmailr/tests/testthat/test-gmailr.R |only gmailr-0.7.1/gmailr/vignettes/sending_messages.md |only gmailr-1.0.0/gmailr/DESCRIPTION | 28 gmailr-1.0.0/gmailr/MD5 | 146 +-- gmailr-1.0.0/gmailr/NAMESPACE | 228 +++- gmailr-1.0.0/gmailr/NEWS.md | 51 + gmailr-1.0.0/gmailr/R/aaa.R |only gmailr-1.0.0/gmailr/R/deprecated.R |only gmailr-1.0.0/gmailr/R/draft.R | 74 - gmailr-1.0.0/gmailr/R/gm-auth.R |only gmailr-1.0.0/gmailr/R/gmailr.R | 228 +--- gmailr-1.0.0/gmailr/R/history.R | 6 gmailr-1.0.0/gmailr/R/label.R | 83 - gmailr-1.0.0/gmailr/R/message.R | 153 ++- gmailr-1.0.0/gmailr/R/mime.R | 204 ++-- gmailr-1.0.0/gmailr/R/old-auth.R |only gmailr-1.0.0/gmailr/R/quoted_prinable.R | 4 gmailr-1.0.0/gmailr/R/thread.R | 59 - gmailr-1.0.0/gmailr/R/utils.R | 27 gmailr-1.0.0/gmailr/README.md | 197 +++- gmailr-1.0.0/gmailr/build/gmailr.pdf |only gmailr-1.0.0/gmailr/build/vignette.rds |binary gmailr-1.0.0/gmailr/inst/doc/gmailr.R |only gmailr-1.0.0/gmailr/inst/doc/gmailr.Rmd |only gmailr-1.0.0/gmailr/inst/doc/gmailr.html |only gmailr-1.0.0/gmailr/inst/doc/sending_messages.R | 131 +- gmailr-1.0.0/gmailr/inst/doc/sending_messages.Rmd | 117 +- gmailr-1.0.0/gmailr/inst/doc/sending_messages.html | 614 +++++++++---- gmailr-1.0.0/gmailr/inst/secret |only gmailr-1.0.0/gmailr/man/accessors.Rd | 63 - gmailr-1.0.0/gmailr/man/as.character.mime.Rd | 37 gmailr-1.0.0/gmailr/man/clear_token.Rd | 24 gmailr-1.0.0/gmailr/man/gm_attachment.Rd |only gmailr-1.0.0/gmailr/man/gm_attachments.Rd |only gmailr-1.0.0/gmailr/man/gm_auth.Rd |only gmailr-1.0.0/gmailr/man/gm_auth_configure.Rd |only gmailr-1.0.0/gmailr/man/gm_body.Rd |only gmailr-1.0.0/gmailr/man/gm_create_draft.Rd |only gmailr-1.0.0/gmailr/man/gm_create_label.Rd |only gmailr-1.0.0/gmailr/man/gm_deauth.Rd |only gmailr-1.0.0/gmailr/man/gm_delete_draft.Rd |only gmailr-1.0.0/gmailr/man/gm_delete_label.Rd |only gmailr-1.0.0/gmailr/man/gm_delete_message.Rd |only gmailr-1.0.0/gmailr/man/gm_delete_thread.Rd |only gmailr-1.0.0/gmailr/man/gm_draft.Rd |only gmailr-1.0.0/gmailr/man/gm_drafts.Rd |only gmailr-1.0.0/gmailr/man/gm_has_token.Rd |only gmailr-1.0.0/gmailr/man/gm_history.Rd |only gmailr-1.0.0/gmailr/man/gm_id.Rd |only gmailr-1.0.0/gmailr/man/gm_import_message.Rd |only gmailr-1.0.0/gmailr/man/gm_insert_message.Rd |only gmailr-1.0.0/gmailr/man/gm_label.Rd |only gmailr-1.0.0/gmailr/man/gm_labels.Rd |only gmailr-1.0.0/gmailr/man/gm_last_response.Rd |only gmailr-1.0.0/gmailr/man/gm_message.Rd |only gmailr-1.0.0/gmailr/man/gm_messages.Rd |only gmailr-1.0.0/gmailr/man/gm_mime.Rd |only gmailr-1.0.0/gmailr/man/gm_modify_message.Rd |only gmailr-1.0.0/gmailr/man/gm_modify_thread.Rd |only gmailr-1.0.0/gmailr/man/gm_profile.Rd |only gmailr-1.0.0/gmailr/man/gm_save_attachment.Rd |only gmailr-1.0.0/gmailr/man/gm_save_attachments.Rd |only gmailr-1.0.0/gmailr/man/gm_send_draft.Rd |only gmailr-1.0.0/gmailr/man/gm_send_message.Rd |only gmailr-1.0.0/gmailr/man/gm_thread.Rd |only gmailr-1.0.0/gmailr/man/gm_threads.Rd |only gmailr-1.0.0/gmailr/man/gm_token.Rd |only gmailr-1.0.0/gmailr/man/gm_trash_message.Rd |only gmailr-1.0.0/gmailr/man/gm_trash_thread.Rd |only gmailr-1.0.0/gmailr/man/gm_untrash_message.Rd |only gmailr-1.0.0/gmailr/man/gm_untrash_thread.Rd |only gmailr-1.0.0/gmailr/man/gm_update_label.Rd |only gmailr-1.0.0/gmailr/man/gmail_auth.Rd | 62 - gmailr-1.0.0/gmailr/man/gmailr-deprecated.Rd |only gmailr-1.0.0/gmailr/man/gmailr.Rd | 21 gmailr-1.0.0/gmailr/man/pipe.Rd | 45 gmailr-1.0.0/gmailr/man/quoted_printable_encode.Rd | 37 gmailr-1.0.0/gmailr/man/use_secret_file.Rd | 32 gmailr-1.0.0/gmailr/tests/testthat.R |only gmailr-1.0.0/gmailr/tests/testthat/helper.R |only gmailr-1.0.0/gmailr/tests/testthat/test-draft.R |only gmailr-1.0.0/gmailr/tests/testthat/test-label.R |only gmailr-1.0.0/gmailr/tests/testthat/test-message.R |only gmailr-1.0.0/gmailr/tests/testthat/test-mime.R |only gmailr-1.0.0/gmailr/tests/testthat/test-quoted_printable.R |only gmailr-1.0.0/gmailr/tests/testthat/test-thread.R |only gmailr-1.0.0/gmailr/vignettes/gmailr.Rmd |only gmailr-1.0.0/gmailr/vignettes/sending_messages.Rmd | 117 +- 121 files changed, 1768 insertions(+), 1020 deletions(-)
Title: Data Validation Infrastructure
Description: Declare data validation rules and data quality indicators;
confront data with them and analyze or visualize the results.
The package supports rules that are per-field, in-record,
cross-record or cross-dataset. Rules can be automatically
analyzed for rule type and connectivity. See also Van der Loo
and De Jonge (2018) <doi:10.1002/9781118897126>,
chapter 6.
Author: Mark van der Loo [cre, aut] (<https://orcid.org/0000-0002-9807-4686>),
Edwin de Jonge [aut],
Paul Hsieh [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between validate versions 0.2.6 dated 2018-08-01 and 0.9.1 dated 2019-08-23
validate-0.2.6/validate/R/functions.R |only validate-0.2.6/validate/tests/testthat |only validate-0.2.6/validate/tests/testthat.R |only validate-0.9.1/validate/DESCRIPTION | 41 - validate-0.9.1/validate/MD5 | 310 +++++----- validate-0.9.1/validate/NAMESPACE | 15 validate-0.9.1/validate/NEWS | 28 validate-0.9.1/validate/R/confrontation.R | 270 +++++--- validate-0.9.1/validate/R/expressionset.R | 59 + validate-0.9.1/validate/R/lumberjack.R | 36 - validate-0.9.1/validate/R/parse.R | 2 validate-0.9.1/validate/R/retailers.R | 15 validate-0.9.1/validate/R/run_validation.R |only validate-0.9.1/validate/R/syntax.R |only validate-0.9.1/validate/R/validator.R | 24 validate-0.9.1/validate/build/vignette.rds |binary validate-0.9.1/validate/data/SBS2000.csv.gz |only validate-0.9.1/validate/inst/doc/indicators.html | 41 + validate-0.9.1/validate/inst/doc/introduction.R | 19 validate-0.9.1/validate/inst/doc/introduction.Rmd | 59 + validate-0.9.1/validate/inst/doc/introduction.html | 126 +++- validate-0.9.1/validate/inst/doc/rule_files.Rmd | 11 validate-0.9.1/validate/inst/doc/rule_files.html | 100 ++- validate-0.9.1/validate/inst/tinytest |only validate-0.9.1/validate/man/aggregate-validation-method.Rd | 7 validate-0.9.1/validate/man/all-validation-method.Rd | 3 validate-0.9.1/validate/man/any-validation-method.Rd | 3 validate-0.9.1/validate/man/as.data.frame-cellComparison-method.Rd | 1 validate-0.9.1/validate/man/as.data.frame-confrontation-method.Rd | 2 validate-0.9.1/validate/man/as.data.frame-expressionset-method.Rd | 4 validate-0.9.1/validate/man/as.data.frame-validatorComparison-method.Rd | 1 validate-0.9.1/validate/man/as.data.frame.Rd | 1 validate-0.9.1/validate/man/barplot-cellComparison-method.Rd | 1 validate-0.9.1/validate/man/barplot-validation-method.Rd | 7 validate-0.9.1/validate/man/barplot-validatorComparison-method.Rd | 5 validate-0.9.1/validate/man/cells.Rd | 1 validate-0.9.1/validate/man/check_that.Rd | 2 validate-0.9.1/validate/man/compare.Rd | 7 validate-0.9.1/validate/man/confront.Rd | 47 - validate-0.9.1/validate/man/confrontation-class.Rd | 2 validate-0.9.1/validate/man/created.Rd | 1 validate-0.9.1/validate/man/description.Rd | 1 validate-0.9.1/validate/man/errors.Rd | 4 validate-0.9.1/validate/man/event.Rd |only validate-0.9.1/validate/man/indication-class.Rd | 3 validate-0.9.1/validate/man/is_complete.Rd |only validate-0.9.1/validate/man/is_unique.Rd |only validate-0.9.1/validate/man/keyset.Rd |only validate-0.9.1/validate/man/label.Rd | 1 validate-0.9.1/validate/man/lbj_cells-class.Rd | 5 validate-0.9.1/validate/man/lbj_rules-class.Rd | 7 validate-0.9.1/validate/man/length.Rd | 2 validate-0.9.1/validate/man/match_cells.Rd | 1 validate-0.9.1/validate/man/meta.Rd | 1 validate-0.9.1/validate/man/names.Rd | 1 validate-0.9.1/validate/man/origin.Rd | 1 validate-0.9.1/validate/man/plot-cellComparison-method.Rd | 1 validate-0.9.1/validate/man/plot-validation-method.Rd | 3 validate-0.9.1/validate/man/plot-validator-method.Rd | 2 validate-0.9.1/validate/man/plot-validatorComparison-method.Rd | 5 validate-0.9.1/validate/man/plus-indicator-indicator-method.Rd | 1 validate-0.9.1/validate/man/plus-validator-validator-method.Rd | 1 validate-0.9.1/validate/man/retailers.Rd | 7 validate-0.9.1/validate/man/run_validation_file.Rd |only validate-0.9.1/validate/man/select.Rd | 2 validate-0.9.1/validate/man/sort-validation-method.Rd | 7 validate-0.9.1/validate/man/syntax.Rd | 10 validate-0.9.1/validate/man/validate-summary.Rd | 7 validate-0.9.1/validate/man/validate_extend.Rd | 2 validate-0.9.1/validate/man/validation-class.Rd | 3 validate-0.9.1/validate/man/validator-class.Rd | 5 validate-0.9.1/validate/man/validator.Rd | 6 validate-0.9.1/validate/man/values.Rd | 5 validate-0.9.1/validate/man/variables.Rd | 5 validate-0.9.1/validate/man/vin.Rd | 2 validate-0.9.1/validate/man/voptions.Rd | 1 validate-0.9.1/validate/tests/tinytest.R |only validate-0.9.1/validate/vignettes/introduction.Rmd | 59 + validate-0.9.1/validate/vignettes/rule_files.Rmd | 11 79 files changed, 974 insertions(+), 449 deletions(-)
Title: Cartography for Statistical Analysis
Description: Creating maps for statistical analysis such as proportional circles, chroropleth, typology and flows. Some functions use 'shiny' or 'leaflet' technologies for dynamism and interactivity.
The great features are :
- Create maps in a web environment where the parameters are modifiable on the fly ('shiny' and 'leaflet' technology).
- Create interactive maps through zoom and pop-up ('leaflet' technology).
- Create frozen maps with the possibility to add labels.
Author: Sébastien CALVET - PSAR-AT - DR Provence-Alpes-Cote d'Azur - INSEE [cre, aut],
Sophie AUDRIC - PSAR-AT - DR Provence-Alpes-Cote d'Azur - INSEE [aut],
SED - DR Hauts-de-France - INSEE [ctb],
PSAR-SL - DR Auvergne-Rhone-Alpes - INSEE [ctb],
PSAR-EEP - DR Occitanie - INSEE [ctb],
SED - DR Pays-de-la-Loire - INSEE [ctb]
Maintainer: Sébastien CALVET <sebastien.calvet@insee.fr>
Diff between oceanis versions 0.8.6 dated 2019-07-05 and 1.0.0 dated 2019-08-23
DESCRIPTION | 8 MD5 | 179 ++++++++----- NAMESPACE | 9 NEWS |only R/add_fond_osm.R | 35 +- R/add_legende_classes.R | 104 +++++--- R/add_legende_fonds_simples.R |only R/add_legende_joignantes.R | 143 +++++++---- R/add_legende_ronds.R | 176 +++++++++---- R/add_legende_saphirs.R | 191 ++++++++++---- R/add_legende_typo.R | 68 +++-- R/add_legende_typo_symboles.R |only R/add_source.R | 76 +++-- R/add_titre.R | 150 ++++++----- R/add_typo_symboles.R |only R/calcul_bornes.R | 11 R/construction_ronds_legende.R | 2 R/coord_legende.R | 9 R/export_projet_qgis_fleches_saphirs.R | 2 R/export_qgis_classes_ronds.R | 4 R/export_qgis_ronds_classes.R | 4 R/extract_fond_leaflet_classes.R | 16 - R/extract_fond_leaflet_classes_ronds.R | 62 ++-- R/extract_fond_leaflet_joignantes.R | 22 - R/extract_fond_leaflet_oursins.R | 14 - R/extract_fond_leaflet_ronds.R | 34 +- R/extract_fond_leaflet_ronds_classes.R | 44 +-- R/extract_fond_leaflet_saphirs.R | 24 - R/extract_fond_leaflet_typo.R | 16 - R/k_classes.R | 12 R/k_ronds.R | 12 R/k_saphir.R | 6 R/k_typo.R | 8 R/largeur_fleche.R | 4 R/leafletVerifParamClasses.R |only R/leafletVerifParamClassesRonds.R |only R/leafletVerifParamFondsSimples.R |only R/leafletVerifParamJoignantes.R |only R/leafletVerifParamOursins.R |only R/leafletVerifParamRonds.R |only R/leafletVerifParamRondsClasses.R |only R/leafletVerifParamSaphirs.R |only R/leafletVerifParamTypo.R |only R/leaflet_classes.R | 241 ++++++++++-------- R/leaflet_classes_ronds.R | 288 ++++++++++++---------- R/leaflet_fonds_simples.R |only R/leaflet_joignantes.R | 204 +++++++-------- R/leaflet_oursins.R | 196 +++++++-------- R/leaflet_ronds.R | 259 +++++++++++-------- R/leaflet_ronds_classes.R | 298 +++++++++++++---------- R/leaflet_saphirs.R | 210 +++++++--------- R/leaflet_typo.R | 161 ++++++------ R/plot_classes.R | 26 +- R/plot_classes_ronds.R | 30 +- R/plot_joignantes.R | 29 +- R/plot_oursins.R | 25 + R/plot_ronds.R | 26 +- R/plot_ronds_classes.R | 30 +- R/plot_saphirs.R | 30 +- R/plot_typo.R | 23 + R/plot_typo_symboles.R |only R/rapport_ronds.R | 4 R/rayon_ronds.R | 2 R/set_couleur_classes.R | 205 +++++++++++++-- R/set_couleur_joignantes.R | 83 +++++- R/set_couleur_ronds.R | 172 +++++++++++-- R/set_couleur_saphirs.R | 123 +++++++-- R/set_couleur_typo.R | 91 ++++--- R/set_fonds_simples.R |only R/set_opacite_elargi.R | 235 ++++++++++++++++-- R/set_style_oursins.R | 48 +++ R/shiny_classes.R | 10 R/shiny_classes_ronds.R | 8 R/shiny_joignantes.R | 6 R/shiny_oursins.R | 6 R/shiny_ronds.R | 7 R/shiny_ronds_classes.R | 8 R/shiny_saphirs.R | 6 R/shiny_typo.R | 6 R/zonage_a_facon.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/integration_shiny.R |only inst/doc/integration_shiny.Rmd |only inst/doc/integration_shiny.html |only inst/doc/oceanis.R | 6 inst/doc/oceanis.Rmd | 6 inst/doc/oceanis.html | 124 ++++----- man/add_legende.Rd | 41 ++- man/add_typo_symboles.Rd |only man/leaflet.Rd | 87 +++++- man/plot.Rd | 59 +++- man/set_couleur.Rd | 15 - man/set_fonds_simples.Rd |only man/set_opacite_elargi.Rd | 5 man/set_style_oursins.Rd | 7 vignettes/images/readme_leaflet_fj.PNG |only vignettes/images/readme_leaflet_rp_ac.PNG |only vignettes/images/readme_leaflet_typo.PNG |only vignettes/images/readme_leaflet_typo_symbole.PNG |only vignettes/images/readme_plot_ac_rp.PNG |only vignettes/images/readme_shiny_ac_rp.PNG |only vignettes/images/readme_shiny_fs.PNG |only vignettes/integration_shiny.Rmd |only vignettes/oceanis.Rmd | 6 105 files changed, 3077 insertions(+), 1826 deletions(-)
Title: Simple yet Flexible Letters via the 'KOMA-Script LaTeX Bundle'
Description: An R Markdown template for writing beautiful yet versatile letters,
using the 'KOMA-Script' letter class 'scrlttr2' and an adaptation of the
'pandoc-letter' template. 'scrlttr2' provides layouts for many different
window envelope types and the possibility to define your own.
Author: Robert Nuske [aut, cre] (<https://orcid.org/0000-0001-9773-2061>),
Dirk Eddelbuettel [aut],
Aaron Wolen [aut]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between komaletter versions 0.3.0 dated 2018-10-12 and 0.3.1 dated 2019-08-23
komaletter-0.3.0/komaletter/ChangeLog |only komaletter-0.3.1/komaletter/DESCRIPTION | 22 ++--- komaletter-0.3.1/komaletter/MD5 | 25 +++--- komaletter-0.3.1/komaletter/NEWS.md | 6 + komaletter-0.3.1/komaletter/README.md | 10 ++ komaletter-0.3.1/komaletter/build/vignette.rds |binary komaletter-0.3.1/komaletter/inst/doc/intro.Rmd | 12 ++- komaletter-0.3.1/komaletter/inst/doc/intro.html | 23 ++++-- komaletter-0.3.1/komaletter/inst/doc/letter_example1.pdf |binary komaletter-0.3.1/komaletter/inst/doc/letter_example2.pdf |binary komaletter-0.3.1/komaletter/inst/doc/letter_example3.pdf |binary komaletter-0.3.1/komaletter/inst/doc/parameterized_letter.html | 37 ++++++++-- komaletter-0.3.1/komaletter/inst/rmarkdown/templates/pdf/resources/maintainersDelight.lco | 4 - komaletter-0.3.1/komaletter/vignettes/intro.Rmd | 12 ++- 14 files changed, 111 insertions(+), 40 deletions(-)
Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum
likelihood estimation for unidimensional and multidimensional
item response models. The package functionality covers the
Rasch model, 2PL model, 3PL model, generalized partial credit model,
multi-faceted Rasch model, nominal item response model,
structured latent class model, mixture distribution IRT models,
and located latent class models. Latent regression models and
plausible value imputation are also supported. For details see
Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>,
Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>,
Formann, 1982 <doi:10.1002/bimj.4710240209>,
Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 3.2-24 dated 2019-07-04 and 3.3-10 dated 2019-08-23
DESCRIPTION | 8 +-- MD5 | 42 +++++++++--------- R/RcppExports.R | 2 R/designMatrices.R | 81 ++++++++++++++++-------------------- R/sirt_import_sfsmisc_QUnif.R | 6 +- R/summary.tam.R | 4 - R/tam.ctt3.R | 16 ++++++- R/tam.mml.R | 9 +--- R/tam_ctt_wrapper.R | 2 R/tam_dtnorm.R | 4 - R/tam_fa_reliability_nonlinearSEM.R | 4 - R/tam_ginv.R | 4 - R/tam_jml_version2.R | 4 - R/tam_mml_se_quick.R | 8 ++- R/tam_mml_se_quick_likelihood.R | 6 +- build/partial.rdb |binary inst/CITATION | 19 ++++---- inst/NEWS | 17 +++++++ man/tam.ctt.Rd | 6 +- src/RcppExports.cpp | 2 src/init.c | 2 src/tam_rcpp_ctt.cpp | 9 +--- 22 files changed, 141 insertions(+), 114 deletions(-)
Title: Automated Backtesting of Portfolios over Multiple Datasets
Description: Automated backtesting of multiple portfolios over multiple
datasets of stock prices in a rolling-window fashion. Intended for
researchers and practitioners to backtest a set of different portfolios,
as well as by a course instructor to assess the students in their portfolio
design in a fully automated and convenient manner, with results conveniently
formatted in tables and plots. Each portfolio design is easily defined as a
function that takes as input a window of the stock prices and outputs the
portfolio weights. Multiple portfolios can be easily specified as a list
of functions or as files in a folder. Multiple datasets can be conveniently
extracted randomly from different markets, different time periods, and
different subsets of the stock universe. The results can be later assessed
and ranked with tables based on a number of performance criteria (e.g.,
expected return, volatility, Sharpe ratio, drawdown, turnover rate, return
on investment, computational time, etc.), as well as plotted in a number of
ways with nice barplots and boxplots.
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
Diff between portfolioBacktest versions 0.1.1 dated 2019-07-05 and 0.2.0 dated 2019-08-23
portfolioBacktest-0.1.1/portfolioBacktest/vignettes/figures/leaderboard.RData |only portfolioBacktest-0.2.0/portfolioBacktest/DESCRIPTION | 16 portfolioBacktest-0.2.0/portfolioBacktest/MD5 | 78 +- portfolioBacktest-0.2.0/portfolioBacktest/NAMESPACE | 6 portfolioBacktest-0.2.0/portfolioBacktest/NEWS.md | 19 portfolioBacktest-0.2.0/portfolioBacktest/R/SP500_symbols.R | 2 portfolioBacktest-0.2.0/portfolioBacktest/R/backtestLeaderboard.R | 6 portfolioBacktest-0.2.0/portfolioBacktest/R/backtestSummary.R | 10 portfolioBacktest-0.2.0/portfolioBacktest/R/dataset10.R | 2 portfolioBacktest-0.2.0/portfolioBacktest/R/param_tuning.R |only portfolioBacktest-0.2.0/portfolioBacktest/R/plotsNtables.R | 61 - portfolioBacktest-0.2.0/portfolioBacktest/R/portfolioBacktest-package.R | 3 portfolioBacktest-0.2.0/portfolioBacktest/R/portfolioBacktest.R | 209 ++++-- portfolioBacktest-0.2.0/portfolioBacktest/R/stockDataDownload.R | 108 ++- portfolioBacktest-0.2.0/portfolioBacktest/README.md | 9 portfolioBacktest-0.2.0/portfolioBacktest/build/vignette.rds |binary portfolioBacktest-0.2.0/portfolioBacktest/inst/CITATION | 4 portfolioBacktest-0.2.0/portfolioBacktest/inst/doc/PortfolioBacktest.html | 341 ++++++---- portfolioBacktest-0.2.0/portfolioBacktest/man/SP500_symbols.Rd | 4 portfolioBacktest-0.2.0/portfolioBacktest/man/backtestBoxPlot.Rd | 4 portfolioBacktest-0.2.0/portfolioBacktest/man/backtestLeaderboard.Rd | 6 portfolioBacktest-0.2.0/portfolioBacktest/man/backtestSelector.Rd | 4 portfolioBacktest-0.2.0/portfolioBacktest/man/backtestSummary.Rd | 2 portfolioBacktest-0.2.0/portfolioBacktest/man/backtestTable.Rd | 2 portfolioBacktest-0.2.0/portfolioBacktest/man/dataset10.Rd | 2 portfolioBacktest-0.2.0/portfolioBacktest/man/figures/bt.RData |binary portfolioBacktest-0.2.0/portfolioBacktest/man/genRandomFuns.Rd |only portfolioBacktest-0.2.0/portfolioBacktest/man/plotPerformanceVsParams.Rd |only portfolioBacktest-0.2.0/portfolioBacktest/man/portfolioBacktest-package.Rd | 3 portfolioBacktest-0.2.0/portfolioBacktest/man/portfolioBacktest.Rd | 32 portfolioBacktest-0.2.0/portfolioBacktest/man/stockDataDownload.Rd | 9 portfolioBacktest-0.2.0/portfolioBacktest/man/stockDataResample.Rd | 8 portfolioBacktest-0.2.0/portfolioBacktest/man/summaryBarPlot.Rd | 4 portfolioBacktest-0.2.0/portfolioBacktest/man/summaryTable.Rd | 17 portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/bt_check.RData |binary portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/bt_files_check.RData |binary portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/bt_selector_check.RData |binary portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/bt_table_check.RData |binary portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/test-errorControl.R | 56 + portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/test-portfolioBacktest.R | 222 ++++++ portfolioBacktest-0.2.0/portfolioBacktest/tests/testthat/test-stockDataDownload.R | 2 portfolioBacktest-0.2.0/portfolioBacktest/vignettes/figures/bt.RData |binary 42 files changed, 889 insertions(+), 362 deletions(-)
More information about portfolioBacktest at CRAN
Permanent link
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains functions for multiple imputation which
complements existing functionality in R.
In particular, several imputation methods for the
mice package (van Buuren & Groothuis-Oudshoorn, 2011,
<doi:10.18637/jss.v045.i03>) are included.
Main features of the miceadds package include
plausible value imputation (Mislevy, 1991,
<doi:10.1007/BF02294457>), multilevel imputation for
variables at any level or with any number of hierarchical
and non-hierarchical levels (Grund, Luedtke & Robitzsch,
2018, <doi:10.1177/1094428117703686>; van Buuren, 2018,
Ch.7, <doi:10.1201/9780429492259>), imputation using
partial least squares (PLS) for high dimensional
predictors (Robitzsch, Pham & Yanagida, 2016),
nested multiple imputation (Rubin, 2003,
<doi:10.1111/1467-9574.00217>) and substantive model
compatible imputation (Bartlett et al., 2015,
<doi:10.1177/0962280214521348>).
Author: Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [ctb]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 3.4-17 dated 2019-06-19 and 3.5-14 dated 2019-08-23
DESCRIPTION | 10 +- MD5 | 27 +++--- R/RcppExports.R | 2 R/mice.impute.pls.R | 10 +- R/mice_imputation_2l_lmer.R | 5 - R/mice_imputation_pls_do_impute.R | 9 +- R/mice_imputation_pls_type_multilevel_models.R |only R/pool.mids.nmi.R | 109 ++++++++++++------------- R/subset_datlist.R | 21 +--- build/partial.rdb |binary inst/CITATION | 21 ++-- inst/NEWS | 13 ++ man/data.internet.Rd | 6 - man/subset_datlist.Rd | 11 +- src/RcppExports.cpp | 2 15 files changed, 129 insertions(+), 117 deletions(-)
Title: Data for 'GAMs: An Introduction with R'
Description: Data sets and scripts used in the book 'Generalized Additive
Models: An Introduction with R', Wood (2006,2017) CRC.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between gamair versions 1.0-0 dated 2016-10-07 and 1.0-2 dated 2019-08-23
ChangeLog | 10 ++++++++ DESCRIPTION | 14 +++++------ MD5 | 62 +++++++++++++++++++++++++------------------------- data/datalist | 12 ++++----- man/aral.Rd | 4 +-- man/bird.Rd | 2 - man/blowfly.Rd | 4 +-- man/bone.Rd | 2 - man/brain.Rd | 8 +++--- man/cairo.Rd | 4 +-- man/ch3.Rd | 9 ++++++- man/ch7.Rd | 1 man/ch7.solutions.Rd | 1 man/chicago.Rd | 4 +-- man/chl.Rd | 6 ++-- man/co2s.Rd | 4 +-- man/coast.Rd | 2 - man/engine.Rd | 2 - man/gamair-package.Rd | 2 - man/harrier.Rd | 4 +-- man/hubble.Rd | 6 ++-- man/ipo.Rd | 6 ++-- man/larynx.Rd | 4 +-- man/mack.Rd | 2 - man/mackp.Rd | 2 - man/meh.Rd | 2 - man/sitka.Rd | 6 ++-- man/sole.Rd | 4 +-- man/sperm.comp1.Rd | 2 - man/sperm.comp2.Rd | 2 - man/stomata.Rd | 10 ++++---- man/wine.Rd | 4 +-- 32 files changed, 113 insertions(+), 94 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE), measurement models are typically multivariate normal factor models.
Using the original ctsem formulation based on OpenMx, described in the JSS paper
"Continuous Time Structural Equation Modeling with R Package ctsem", with updated version
as CRAN vignette <https://cran.r-project.org/web/packages/ctsem/vignettes/ctsem.pdf> ,
linear mixed effects SDE's estimated via maximum likelihood and optimization are possible.
Using the Stan based formulation, described in <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf> ,
nonlinearity (state dependent parameters) and random effects on all parameters
are possible, using either optimization (with optional importance sampling) or
Stan's Hamiltonian Monte Carlo sampling. Priors may be used. For the conceptual
overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 3.0.0 dated 2019-07-31 and 3.0.1 dated 2019-08-23
DESCRIPTION | 10 - MD5 | 53 ++--- NAMESPACE | 1 NEWS | 5 R/Kalman.R | 274 --------------------------- R/ctIntervalise.R | 36 ++- R/ctJacobian.R | 4 R/ctKalman.R | 40 ++-- R/ctModelLatex.R | 20 +- R/ctStanFit.R | 13 - R/ctStanKalman.R | 94 ++++++--- R/ctStanModelWriter.R | 294 +++++++++++++++++++---------- R/ctStanParMatrices.R | 8 R/ctsem.R | 9 R/stanoptimis.R | 31 ++- R/summary.ctStanFit.R | 82 ++++---- README.md | 74 +++++-- data/ctstantestfit.rda |binary inst/doc/ctsem.pdf |binary man/ctDocs.Rd |only man/ctKalman.Rd | 5 man/ctModelLatex.Rd | 8 man/ctStanFit.Rd | 1 src/stan_files/ctsm.stan | 230 +++++++++++++++-------- src/stan_files/ctsmgen.stan | 229 +++++++++++++++------- tests/testthat/test-dtVct.R | 5 tests/testthat/test-runExamples.R | 10 - tests/testthat/test-ukfpoptest.R | 379 +++++++++++++++++++++----------------- 28 files changed, 1059 insertions(+), 856 deletions(-)
Title: Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Description: Implements a wide variety of one- and two-parameter Bayesian CRM
designs. The program can run interactively, allowing the user to enter outcomes
after each cohort has been recruited, or via simulation to assess operating
characteristics. See Sweeting et al. (2013): <doi:10.18637/jss.v054.i13>.
Author: Michael Sweeting [aut],
Graham Wheeler [aut, cre]
Maintainer: Graham Wheeler <graham.wheeler@ucl.ac.uk>
Diff between bcrm versions 0.5.3 dated 2019-06-04 and 0.5.4 dated 2019-08-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/bcrm-package.R | 2 +- R/bcrm.R | 10 +++++----- R/simFun.R | 6 +++--- R/stopcheck.R | 3 ++- 7 files changed, 28 insertions(+), 21 deletions(-)
Title: Estimating and Testing the Number of Interesting Components in
Linear Dimension Reduction
Description: For different linear dimension reduction methods like principal components analysis (PCA), independent components analysis (ICA) and supervised linear dimension reduction tests and estimates for the number of interesting components (ICs) are provided.
Author: Klaus Nordhausen, Hannu Oja, David E. Tyler, Joni Virta
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between ICtest versions 0.3-1 dated 2018-05-22 and 0.3-2 dated 2019-08-23
ICtest-0.3-1/ICtest/src/aa.c |only ICtest-0.3-2/ICtest/DESCRIPTION | 11 ++++---- ICtest-0.3-2/ICtest/MD5 | 34 +++++++++++++------------ ICtest-0.3-2/ICtest/NAMESPACE | 3 ++ ICtest-0.3-2/ICtest/R/InternalLadleFunctions.R | 3 -- ICtest-0.3-2/ICtest/R/PCAasympnoise.R |only ICtest-0.3-2/ICtest/R/RcppExports.R | 6 ++-- ICtest-0.3-2/ICtest/R/ggplot.ictest.R | 7 ++--- ICtest-0.3-2/ICtest/R/ggplot.ladle.R |only ICtest-0.3-2/ICtest/R/plot.ictest.R | 5 +-- ICtest-0.3-2/ICtest/build/vignette.rds |binary ICtest-0.3-2/ICtest/inst/ChangeLog | 4 ++ ICtest-0.3-2/ICtest/inst/doc/ICA.html | 2 - ICtest-0.3-2/ICtest/inst/doc/PCA.html | 6 ++-- ICtest-0.3-2/ICtest/inst/doc/SIR.html | 2 - ICtest-0.3-2/ICtest/man/ggplot.ictest.Rd | 4 +- ICtest-0.3-2/ICtest/man/ggplot.ladle.Rd |only ICtest-0.3-2/ICtest/man/plot.ictest.Rd | 6 ++-- ICtest-0.3-2/ICtest/man/plot.ladle.Rd | 9 +++++- ICtest-0.3-2/ICtest/src/RcppExports.cpp | 18 +++++++++++-- 20 files changed, 72 insertions(+), 48 deletions(-)
Title: Pretty Time of Day
Description: Implements an S3 class for storing and formatting time-of-day
values, based on the 'difftime' class.
Author: Kirill Müller [aut, cre],
The R Consortium [fnd],
RStudio [fnd]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between hms versions 0.5.0 dated 2019-07-09 and 0.5.1 dated 2019-08-23
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/cast.R | 7 +++++-- build/hms.pdf |binary tests/testthat/test-coercion.R | 3 +++ 6 files changed, 22 insertions(+), 11 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either Laplace approximation method or variational approximation method implemented via TMB (Kristensen et al., (2016), <doi:10.18637/jss.v070.i05>).
For details see Niku et al. (2019) <doi:10.1371/journal.pone.0216129>.
Author: Jenni Niku, Wesley Brooks, Riki Herliansyah, Francis K.C. Hui, Sara Taskinen, David I. Warton
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 1.1.3 dated 2019-04-16 and 1.1.6 dated 2019-08-23
DESCRIPTION | 14 + MD5 | 59 +++++-- NAMESPACE | 14 + R/TMBtrait.R | 59 +++++-- R/confint.gllvm.R | 4 R/getLV.gllvm.R |only R/gllvm.R | 28 ++- R/gllvm.TMB.R | 81 +++++++--- R/gllvm.auxiliary.R | 356 +++++++++++++++++++++++++++++------------------- R/ordiplot.gllvm.R | 46 ++++-- R/plot.gllvm.R | 29 ++- R/predict.gllvm.R | 22 ++ R/predictLVs.gllvm.R |only R/residuals.gllvm.R | 22 ++ R/simulate.gllvm.R |only R/summary.gllvm.R | 3 build |only data |only inst |only man/getLV.gllvm.Rd |only man/gllvm.Rd | 11 + man/ordiplot.gllvm.Rd | 9 + man/plot.gllvm.Rd | 9 - man/predict.gllvm.Rd | 5 man/predictLVs.gllvm.Rd |only man/sim_bacteria.Rd |only man/simulate.gllvm.Rd |only src/gllvm.cpp | 30 +++- tests |only vignettes |only 30 files changed, 544 insertions(+), 257 deletions(-)
Title: Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
Description: The fitting algorithms considered in this package have two major objectives. One is to provide a smoothing device to fit distributions to data using the weight and unweighted discretised approach based on the bin width of the histogram. The other is to provide a definitive fit to the data set using the maximum likelihood and quantile matching estimation. Other methods such as moment matching, starship method, L moment matching are also provided. Diagnostics on goodness of fit can be done via qqplots, KS-resample tests and comparing mean, variance, skewness and kurtosis of the data with the fitted distribution.
Author: Steve Su, with contributions from: Diethelm Wuertz, Martin Maechler and Rmetrics core team members for low discrepancy algorithm, Juha Karvanen for L moments codes, Robert King for gld C codes and starship codes, Benjamin Dean for corrections and input in ks.gof code and R core team for histsu function.
Maintainer: Steve Su <allegro.su@gmail.com>
Diff between GLDEX versions 2.0.0.5 dated 2016-12-26 and 2.0.0.6 dated 2019-08-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/fun.diag.ks.g.Rd | 4 ++-- man/fun.diag.ks.g.bimodal.Rd | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
More information about completejourney at CRAN
Permanent link
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp, Mathew Jay and Charles Reynard.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 1.0-2 dated 2019-05-22 and 1.0-4 dated 2019-08-23
epiR-1.0-2/epiR/R/NEW_epi.2by2_v01.R |only epiR-1.0-2/epiR/R/NEW_epi.2by2_v02.R |only epiR-1.0-4/epiR/DESCRIPTION | 10 ++--- epiR-1.0-4/epiR/MD5 | 12 ++---- epiR-1.0-4/epiR/R/epi.cp.R | 4 +- epiR-1.0-4/epiR/R/epi.tests.R | 35 +++++++++++++++++++ epiR-1.0-4/epiR/man/epi.interaction.Rd | 4 +- epiR-1.0-4/epiR/man/epi.tests.Rd | 58 +++++++++++++++++++++++++++++---- 8 files changed, 100 insertions(+), 23 deletions(-)