Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table
and 'censoring count plot'. Other functions are also available to plot
adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut],
Przemyslaw Biecek [aut],
Scheipl Fabian [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.4.5 dated 2019-08-03 and 0.4.6 dated 2019-09-03
DESCRIPTION | 10 - MD5 | 38 ++-- NAMESPACE | 1 NEWS.md | 11 + R/ggadjustedcurves.R | 86 +++++++--- R/ggcompetingrisks.R | 3 R/ggsurvplot_group_by.R | 2 R/utilities.R | 2 README.md | 4 inst/doc/Informative_Survival_Plots.html | 43 +++-- inst/doc/Playing_with_fonts_and_texts.html | 47 +++-- inst/doc/Specifiying_weights_in_log-rank_comparisons.html | 45 +++-- man/ggadjustedcurves.Rd | 13 + man/ggcompetingrisks.Rd | 3 tools/README-ggplot2-basic-survival-plot-1.png |binary tools/README-ggplot2-customized-survival-plot-1.png |binary tools/README-ggplot2-more-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-premium-customized-survival-plot-1.png |binary 20 files changed, 204 insertions(+), 104 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
"Cramer's V" for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.1.2 dated 2019-08-03 and 0.2.0 dated 2019-09-03
DESCRIPTION | 10 +- MD5 | 56 +++++++-------- NAMESPACE | 1 NEWS.md | 13 +++ R/anova_summary.R | 2 R/anova_test.R | 66 ++++++++++++------ R/doo.R | 45 ++++++++++-- R/emmeans_test.R | 32 ++++---- R/factors.R | 13 ++- R/get_test_label.R | 13 ++- R/outliers.R | 16 ++-- R/tukey_hsd.R | 38 ++++++---- R/utilities.R | 29 ++++++- R/welch_anova_test.R | 21 ++--- README.md | 13 +-- man/anova_test.Rd | 28 ++++--- man/doo.Rd | 12 ++- man/emmeans_test.Rd | 24 +++--- man/factors.Rd | 5 - man/outliers.Rd | 10 +- tools/README-comaprison-against-reference-group-1.png |binary tools/README-comaprison-against-reference-group-2.png |binary tools/README-comparison-against-base-mean-1.png |binary tools/README-custoize-p-value-labels-1.png |binary tools/README-grouped-two-sample-t-test-1.png |binary tools/README-paired-t-test-1.png |binary tools/README-pairwise-comparisons-1.png |binary tools/README-unnamed-chunk-10-1.png |binary tools/README-unpaired-two-sample-t-test-1.png |binary 29 files changed, 284 insertions(+), 163 deletions(-)
Title: Mocking Library for R
Description: The two main functionalities of this package are creating mock
objects (functions) and selectively intercepting calls to a given
function that originate in some other function. It can be used
with any testing framework available for R. Mock objects can
be injected with either this package's own stub() function or a
similar with_mock() facility present in the 'testthat' package.
Author: Noam Finkelstein [aut],
Lukasz Bartnik [aut],
Jim Hester [cre]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between mockery versions 0.4.1.1 dated 2018-08-19 and 0.4.2 dated 2019-09-03
mockery-0.4.1.1/mockery/NEWS |only mockery-0.4.2/mockery/DESCRIPTION | 30 mockery-0.4.2/mockery/MD5 | 18 mockery-0.4.2/mockery/NEWS.md |only mockery-0.4.2/mockery/R/stub.R | 20 mockery-0.4.2/mockery/README.md | 42 mockery-0.4.2/mockery/build/vignette.rds |binary mockery-0.4.2/mockery/inst/doc/mocks-and-testthat.Rmd | 4 mockery-0.4.2/mockery/inst/doc/mocks-and-testthat.html | 796 +++++++++-------- mockery-0.4.2/mockery/tests/testthat/test_stub.R | 13 mockery-0.4.2/mockery/vignettes/mocks-and-testthat.Rmd | 4 11 files changed, 495 insertions(+), 432 deletions(-)
Title: Extracts Features from Text
Description: A tool for extracting some generic features (e.g., number of
words, line breaks, characters per word, URLs, lower case, upper case,
commas, periods, exclamation points, etc.) from strings of text.
Author: Michael W. Kearney [aut, cre] (<https://orcid.org/0000-0002-0730-4694>),
Emil Hvitfeldt [ctb] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Michael W. Kearney <kearneymw@missouri.edu>
Diff between textfeatures versions 0.3.2 dated 2019-04-12 and 0.3.3 dated 2019-09-03
textfeatures-0.3.2/textfeatures/tools |only textfeatures-0.3.3/textfeatures/DESCRIPTION | 23 textfeatures-0.3.3/textfeatures/MD5 | 28 - textfeatures-0.3.3/textfeatures/NAMESPACE | 3 textfeatures-0.3.3/textfeatures/NEWS.md | 6 textfeatures-0.3.3/textfeatures/R/count.R | 81 +++ textfeatures-0.3.3/textfeatures/R/features-word_dims.R | 2 textfeatures-0.3.3/textfeatures/R/newdata.R | 15 textfeatures-0.3.3/textfeatures/R/textfeatures.R | 44 + textfeatures-0.3.3/textfeatures/R/tweet-features.R | 1 textfeatures-0.3.3/textfeatures/R/word2vec.R | 33 + textfeatures-0.3.3/textfeatures/README.md | 252 ++++------ textfeatures-0.3.3/textfeatures/man/count_functions.Rd |only textfeatures-0.3.3/textfeatures/man/figures/logo.png |binary textfeatures-0.3.3/textfeatures/man/textfeatures.Rd | 7 textfeatures-0.3.3/textfeatures/man/word_dims.Rd |only textfeatures-0.3.3/textfeatures/tests/testthat/test-verbose.R |only 17 files changed, 316 insertions(+), 179 deletions(-)
Title: 'ggplot2' Based Publication Ready Plots
Description: The 'ggplot2' package is excellent and flexible for elegant data
visualization in R. However the default generated plots requires some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'- based publication ready plots.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggpubr versions 0.2.2 dated 2019-08-07 and 0.2.3 dated 2019-09-03
DESCRIPTION | 11 +- MD5 | 60 +++++++------- NAMESPACE | 2 NEWS.md | 17 +++ R/ggpie.R | 19 ++-- R/stat_central_tendency.R |only R/stat_cor.R | 3 R/stat_overlay_normal_density.R |only R/stat_pvalue_manual.R | 2 README.md | 2 man/geom_bracket.Rd | 3 man/stat_central_tendency.Rd |only man/stat_chull.Rd | 3 man/stat_compare_means.Rd | 3 man/stat_conf_ellipse.Rd | 3 man/stat_cor.Rd | 3 man/stat_mean.Rd | 3 man/stat_overlay_normal_density.Rd |only man/stat_regline_equation.Rd | 3 man/stat_stars.Rd | 3 tools/README-cleveland-dot-plots-1.png |binary tools/README-deviation-graphs-1.png |binary tools/README-deviation-graphs-horizontal-1.png |binary tools/README-ggpubr-1.png |binary tools/README-ggpubr-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-1.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-3.png |binary tools/README-lollipop-chart-1.png |binary tools/README-lollipop-chart-deviation-1.png |binary tools/README-lollipop-chart-rotate-1.png |binary tools/README-ordered-bar-plots-1.png |binary tools/README-ordered-bar-plots-by-groups-1.png |binary 33 files changed, 86 insertions(+), 54 deletions(-)
Title: Functional Data Analysis in a Mixed Model Framework
Description: Likelihood based analysis of 1-dimension functional data
in a mixed-effects model framework. Matrix computation are
approximated by semi-explicit operator equivalents with linear
computational complexity. Markussen (2013) <doi:10.3150/11-BEJ389>.
Author: Bo Markussen [aut, cre]
Maintainer: Bo Markussen <bomar@math.ku.dk>
Diff between fdaMixed versions 0.5 dated 2017-03-07 and 0.6 dated 2019-09-03
DESCRIPTION | 16 +++++++++------- MD5 | 12 ++++++------ man/dataTrans.Rd | 2 +- man/fdaLm.Rd | 2 +- man/fdaMixed-package.Rd | 6 ++---- man/findRoots.Rd | 2 +- src/fdaEngine.cpp | 8 ++++---- 7 files changed, 24 insertions(+), 24 deletions(-)
Title: Request <https://openblender.io> API Services
Description: Interface to make HTTP requests to 'OpenBlender' API services. Go to <https://openblender.io> for more information.
Author: Open Blender Inc. [cph],
Daniel V. Pinacho [aut, cre]
Maintainer: Daniel V. Pinacho <danielvpinacho@gmail.com>
Diff between openblender versions 0.1.0 dated 2019-08-28 and 0.2.0 dated 2019-09-03
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 - R/create_dataset.R | 8 ++++---- R/get_observations.R | 4 ++-- R/insert_observations.R | 4 ++-- R/openblender.R | 4 ++-- R/utils.R | 6 +++--- README.md | 3 +-- tests/testthat.R | 9 ++++----- 10 files changed, 31 insertions(+), 34 deletions(-)
Title: R Bindings to the Feather 'API'
Description: Read and write feather files, a lightweight binary columnar
data store designed for maximum speed.
Author: Hadley Wickham [aut, cre],
RStudio [cph],
Feather developers [ctb] (Bundled feather library),
Google [ctb] (Bundled flatbuffers code),
LevelDB Authors [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between feather versions 0.3.3 dated 2019-03-27 and 0.3.4 dated 2019-09-03
DESCRIPTION | 8 ++--- MD5 | 60 ++++++++++++++++++++++++++++++++++++++-- src/feather/CMakeFiles |only src/feather/CTestTestfile.cmake |only src/feather/cmake_install.cmake |only tests/testthat/test-read.R | 2 + 6 files changed, 64 insertions(+), 6 deletions(-)
Title: Interface to the Google Cloud Machine Learning Platform
Description: Interface to the Google Cloud Machine Learning Platform
<https://cloud.google.com/ml-engine>, which provides cloud tools for training machine
learning models.
Author: Daniel Falbel [aut, cre],
Javier Luraschi [aut],
JJ Allaire [aut],
Kevin Ushey [aut],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between cloudml versions 0.6.0 dated 2018-08-27 and 0.6.1 dated 2019-09-03
DESCRIPTION | 16 MD5 | 38 +- NAMESPACE | 1 NEWS.md | 11 R/arguments.R | 8 R/gcloud-version.R |only R/jobs.R | 15 R/scope.R | 5 build/vignette.rds |binary inst/cloudml/setup.py | 7 inst/doc/deployment.html | 603 +++++++++++++++++++--------------- inst/doc/getting_started.Rmd | 4 inst/doc/getting_started.html | 592 +++++++++++++++++++-------------- inst/doc/storage.html | 629 ++++++++++++++++++++--------------- inst/doc/training.html | 737 ++++++++++++++++++++++-------------------- inst/doc/tuning.html | 703 +++++++++++++++++++++------------------- inst/examples/custom_command |only man/cloudml-package.Rd | 3 man/gcloud_version.Rd |only tests/testthat/test-train.R | 11 vignettes/getting_started.Rmd | 4 21 files changed, 1897 insertions(+), 1490 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott is the sole author and creator of the BOOM project.
Some code in the BOOM libraries has been modified from other open source
projects. These include Cephes (obtained from Netlib, written by Stephen
L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a
modified version of the R math libraries (R core development team). Original
copyright notices have been maintained in all source files. In these cases,
copyright claimed by Steven L. Scott is limited to modifications made to the
original code. Google claims copyright for code written while Steven
L. Scott was employed at Google from 2008 - 2018, but BOOM is not an
officially supported Google project.
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9.1 dated 2019-06-06 and 0.9.2 dated 2019-09-03
DESCRIPTION | 9 MD5 | 89 +- R/boxplot.true.R | 15 inst/include/LinAlg/Selector.hpp | 2 inst/include/LinAlg/SubMatrix.hpp | 1 inst/include/Models/Glm/PosteriorSamplers/IndependentRegressionModelsPosteriorSampler.hpp | 5 inst/include/Models/Glm/RegressionModel.hpp | 1 inst/include/Models/Glm/WeightedRegressionModel.hpp | 1 inst/include/Models/IndependentMvnModel.hpp | 114 ++- inst/include/Models/Policies/DataInfoPolicy.hpp | 2 inst/include/Models/Policies/MixtureDataPolicy.hpp | 8 inst/include/Models/Policies/SufstatDataPolicy.hpp | 1 inst/include/Models/StateSpace/MultivariateStateSpaceRegressionModel.hpp | 24 inst/include/Models/StateSpace/StateModels/LocalLevelStateModel.hpp | 13 inst/include/cpputil/Ptr.hpp | 302 ++-------- inst/include/cpputil/Split.hpp | 81 ++ inst/include/cpputil/portable_math.hpp | 15 inst/include/cpputil/string_utils.hpp | 11 inst/include/r_interface/list_io.hpp | 26 inst/include/stats/Bspline.hpp | 59 - inst/include/stats/Mspline.hpp | 87 +- man/boxplot.true.Rd | 7 man/mscan.Rd | 6 src/Bmath/qgamma.cpp | 3 src/LinAlg/Matrix.cpp | 27 src/LinAlg/SubMatrix.cpp | 10 src/Makevars | 3 src/Models/Glm/PosteriorSamplers/BregVsSampler.cpp | 2 src/Models/IndependentMvnModel.cpp | 160 ++--- src/Models/PointProcess/PointProcess.cpp | 4 src/Models/Policies/MixtureDataPolicy.cpp | 17 src/Models/StateSpace/MultivariateStateSpaceRegressionModel.cpp | 71 +- src/Models/StateSpace/PosteriorSamplers/MvStateSpaceRegressionPosteriorSampler.cpp | 45 - src/Models/StateSpace/StateModels/SeasonalStateModel.cpp | 4 src/Models/StateSpace/StateSpaceLogitModel.cpp | 2 src/Models/StateSpace/StateSpaceModelBase.cpp | 27 src/Models/StateSpace/StateSpacePoissonModel.cpp | 2 src/Models/StateSpace/StateSpaceRegressionModel.cpp | 9 src/Models/StateSpace/StateSpaceStudentRegressionModel.cpp | 2 src/boom_r_tools.cpp | 16 src/cpputil/concatenate_strings.cpp |only src/cpputil/split.cpp | 155 ++++- src/list_io.cpp | 37 - src/prior_specification.cpp | 2 src/stats/Bspline.cpp | 66 +- src/stats/summary.cpp | 5 46 files changed, 886 insertions(+), 662 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula
in 'Tidy Eval' code that calculates the predictions.
It works with several databases back-ends because it leverages 'dplyr'
and 'dbplyr' for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), earth(), xgb.Booster.complete(),
cubist(), and ctree() models.
Author: Edgar Ruiz [aut, cre]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between tidypredict versions 0.4.2 dated 2019-07-15 and 0.4.3 dated 2019-09-03
DESCRIPTION | 6 +-- MD5 | 72 +++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 6 +++ R/model-partykit.R | 26 +++++++++++++++ R/model-ranger.R | 36 +++++++++++++-------- R/model-rf.R | 16 +++++++-- R/test-predictions.R | 27 ++++++++++++++- inst/doc/cubist.html | 8 +++- inst/doc/glm.html | 6 ++- inst/doc/lm.html | 6 ++- inst/doc/mars.R | 2 - inst/doc/mars.Rmd | 2 - inst/doc/mars.html | 8 +++- inst/doc/non-r.html | 6 ++- inst/doc/ranger.R | 2 - inst/doc/ranger.Rmd | 2 - inst/doc/ranger.html | 18 +++++----- inst/doc/regression.html | 4 ++ inst/doc/rf.R | 2 - inst/doc/rf.Rmd | 2 - inst/doc/rf.html | 8 +++- inst/doc/save.html | 6 ++- inst/doc/sql.html | 6 ++- inst/doc/tree.html | 4 ++ inst/doc/xgboost.R | 2 - inst/doc/xgboost.Rmd | 2 - inst/doc/xgboost.html | 8 +++- tests/testthat/test-earth.R | 10 +++-- tests/testthat/test-party.R | 14 +++++++- tests/testthat/test-ranger.R | 2 - tests/testthat/test-tester.R | 7 ---- tests/testthat/test_xgboost.R | 2 - vignettes/mars.Rmd | 2 - vignettes/ranger.Rmd | 2 - vignettes/rf.Rmd | 2 - vignettes/xgboost.Rmd | 2 - 37 files changed, 232 insertions(+), 105 deletions(-)
Title: Asymmetric Distributions and Quantile Estimation
Description: Provides the local polynomial maximum likelihood estimates for the location and scale functions as well as the semiparametric quantile estimates in the generalized quantile-based asymmetric distributional setting. These functions are useful for any member of the generalized quantile-based asymmetric family of distributions.
Author: Rezaul Karim <rezaul@juniv.edu>,
Irène Gijbels <Irene.Gijbels@kuleuven.be>,
Anneleen Verhasselt <anneleen.verhasselt@uhasselt.be >
Maintainer: Md Rezaul Karim <rezaul@juniv.edu>
Diff between QBAsyDist versions 0.1.1 dated 2019-05-03 and 0.1.2 dated 2019-09-03
DESCRIPTION | 8 +-- MD5 | 68 ++++++++++++++------------- NAMESPACE | 3 + R/ALaD.R | 10 ++-- R/ALoD.R | 10 ++-- R/AND.R | 134 ++++-------------------------------------------------- R/ATD.R | 10 ++-- R/LR.R |only R/NLR.R |only R/QBAD.R | 33 +++++++++---- man/ALaD.Rd | 2 man/ALoD.Rd | 2 man/AND.Rd | 2 man/ATD.Rd | 2 man/LRTest.Rd |only man/LogLikALaD.Rd | 2 man/LogLikALoD.Rd | 2 man/LogLikAND.Rd | 2 man/LogLikATD.Rd | 2 man/LogLikQBAD.Rd | 2 man/NLRTest.Rd |only man/QBAD.Rd | 2 man/mleALaD.Rd | 2 man/mleALoD.Rd | 2 man/mleAND.Rd | 7 ++ man/mleATD.Rd | 2 man/mleQBAD.Rd | 9 ++- man/momALaD.Rd | 2 man/momALoD.Rd | 2 man/momAND.Rd | 2 man/momATD.Rd | 2 man/momQBAD.Rd | 2 man/momentALaD.Rd | 2 man/momentALoD.Rd | 2 man/momentAND.Rd | 2 man/momentATD.Rd | 2 man/momentQBAD.Rd | 2 37 files changed, 126 insertions(+), 212 deletions(-)
Title: Non-Negative Conjugate-Gradient Minimizer
Description: Minimize a differentiable function subject to all the variables being non-negative (i.e. >= 0),
using a Conjugate-Gradient algorithm based on a modified Polak-Ribiere-Polyak formula as described in
(Li, Can, 2013, <https://www.hindawi.com/journals/jam/2013/986317/abs/>).
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between nonneg.cg versions 0.1.1 dated 2019-02-18 and 0.1.5 dated 2019-09-03
DESCRIPTION | 10 ++++--- MD5 | 12 ++++----- R/minimize.R | 2 - man/minimize.nonneg.cg.Rd | 2 - src/Makevars | 3 +- src/nonnegcg.c | 59 ++++++++++++++++++++++++---------------------- src/rwrapper.cpp | 4 --- 7 files changed, 48 insertions(+), 44 deletions(-)
Title: Local Variable Importance via Oscillations of Ceteris Paribus
Profiles
Description: Provides an easy to calculate variable importance measure based on
Ceteris Paribus plot and is calculated in eight variants. We obtain eight
variants measure through the possible combinations of three parameters such as
absolute_deviation, point and density.
Author: Anna Kozak [aut, cre],
Przemyslaw Biecek [aut, ths]
Maintainer: Anna Kozak <anna1993kozak@gmail.com>
Diff between vivo versions 0.1.0 dated 2019-06-17 and 0.1.1 dated 2019-09-03
DESCRIPTION | 16 ++++++++-------- MD5 | 34 ++++++++++++++++++---------------- NAMESPACE | 5 ++++- NEWS.md | 6 ++++++ R/calculate_variable_split.R |only R/calculate_weight.R | 7 ++++--- R/local_variable_importance.R | 4 ++-- R/plot_local_importance.R | 4 ++-- README.md | 22 ++++++++++++++++------ inst/doc/vignette_apartments.R | 3 ++- inst/doc/vignette_apartments.Rmd | 3 ++- inst/doc/vignette_apartments.html | 15 ++++++++------- man/calculate_variable_split.Rd |only man/calculate_weight.Rd | 7 ++++--- man/local_variable_importance.Rd | 2 +- man/plot.local_importance.Rd | 2 +- tests/testthat/objects_for_tests.R | 2 +- tests/testthat/test_measure.R | 6 ++++++ vignettes/vignette_apartments.Rmd | 3 ++- 19 files changed, 87 insertions(+), 54 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb],
R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 4.1-1 dated 2019-05-28 and 4.1-2 dated 2019-09-03
DESCRIPTION | 12 MD5 | 26 NEWS | 10 R/Effect-methods.R | 7 R/Effect.R | 6 R/plot-methods.R | 2087 ++++++++++++++++----------------- R/utilities.R | 1213 +++++++++---------- build/vignette.rds |binary inst/doc/adding-Effect-methods.Rnw | 21 inst/doc/adding-Effect-methods.pdf |binary inst/doc/partial-residuals.pdf |binary inst/doc/predictor-effects-gallery.pdf |binary man/effects-package.Rd | 164 +- vignettes/adding-Effect-methods.Rnw | 21 14 files changed, 1797 insertions(+), 1770 deletions(-)
Title: Process Performance Qualification (PPQ) Plans in Chemistry,
Manufacturing and Controls (CMC) Statistical Analysis
Description: Assessment for statistically-based PPQ sampling plan, including calculating the passing probability, optimizing the baseline and high performance cutoff points, visualizing the PPQ plan and power dynamically. The analytical idea is based on the simulation methods from the textbook "Burdick, R. K., LeBlond, D. J., Pfahler, L. B., Quiroz, J., Sidor, L., Vukovinsky, K., & Zhang, L. (2017). Statistical Methods for CMC Applications. In Statistical Applications for Chemistry, Manufacturing and Controls (CMC) in the Pharmaceutical Industry (pp. 227-250). Springer, Cham."
Author: Yalin Zhu [aut, cre] (<https://orcid.org/0000-0003-3830-8660>),
Merck & Co., Inc. [cph]
Maintainer: Yalin Zhu <yalin.zhu@merck.com>
Diff between PPQplan versions 0.1.0 dated 2018-06-15 and 1.0.0 dated 2019-09-03
DESCRIPTION | 26 LICENSE |only MD5 | 39 NAMESPACE | 2 R/PIfun.R | 8 R/functions.R | 314 +++-- README.md |only build/vignette.rds |binary inst/doc/PPQnote.Rmd |only inst/doc/PPQnote.pdf |only inst/doc/PPQplan-vignette.R | 10 inst/doc/PPQplan-vignette.Rmd | 38 inst/doc/PPQplan-vignette.html | 2360 ++++++++++++++++++++++++++++++++++++++--- man/PPQ.ctplot.Rd | 3 man/PPQ.ggplot.Rd | 3 man/PPQ.occurve.Rd | 8 man/PPQ.pp.Rd | 3 man/heatmap_ly.Rd |only man/pi.ctplot.Rd | 3 man/pi.occurve.Rd | 3 man/pi.pp.Rd | 2 man/pp.Rd |only vignettes/PPQnote.Rmd |only vignettes/PPQplan-vignette.Rmd | 38 24 files changed, 2573 insertions(+), 287 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package.
'pkgdown' converts your documentation, vignettes, 'README', and more to
'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 1.3.0 dated 2018-12-06 and 1.4.0 dated 2019-09-03
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Title: Utilities for Graphical Rendering
Description: Useful tools for writing vector graphics devices.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
Yixuan Qiu [ctb],
R Core Team [cph] (Cairo code from X11 device),
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.1.9 dated 2019-06-18 and 0.2.0 dated 2019-09-03
gdtools-0.1.9/gdtools/R/helpers-locale.R |only gdtools-0.1.9/gdtools/R/load.R |only gdtools-0.1.9/gdtools/inst/fontconfig |only gdtools-0.1.9/gdtools/src/sys_fonts.cpp |only gdtools-0.1.9/gdtools/tests/testthat/test-font_family_exists.R |only gdtools-0.1.9/gdtools/tests/testthat/test-locale.R |only gdtools-0.2.0/gdtools/DESCRIPTION | 11 gdtools-0.2.0/gdtools/MD5 | 55 +-- gdtools-0.2.0/gdtools/NAMESPACE | 4 gdtools-0.2.0/gdtools/R/RcppExports.R | 22 - gdtools-0.2.0/gdtools/R/cpp-proxies.R | 40 -- gdtools-0.2.0/gdtools/R/font_family_exists.R | 8 gdtools-0.2.0/gdtools/R/fontconfig.R | 153 +--------- gdtools-0.2.0/gdtools/R/gdtools.R | 4 gdtools-0.2.0/gdtools/R/m_str_extents.R | 4 gdtools-0.2.0/gdtools/configure | 4 gdtools-0.2.0/gdtools/man/font_family_exists.Rd | 2 gdtools-0.2.0/gdtools/man/fontconfig_reinit.Rd | 4 gdtools-0.2.0/gdtools/man/match_family.Rd | 36 -- gdtools-0.2.0/gdtools/man/set_dummy_conf.Rd | 23 - gdtools-0.2.0/gdtools/man/str_extents.Rd | 4 gdtools-0.2.0/gdtools/man/str_metrics.Rd | 4 gdtools-0.2.0/gdtools/man/sys_fonts.Rd | 6 gdtools-0.2.0/gdtools/man/version_cairo.Rd | 6 gdtools-0.2.0/gdtools/src/CairoContext.cpp | 34 +- gdtools-0.2.0/gdtools/src/Makevars.in | 5 gdtools-0.2.0/gdtools/src/Makevars.win | 6 gdtools-0.2.0/gdtools/src/RcppExports.cpp | 61 --- gdtools-0.2.0/gdtools/src/font_metrics.cpp | 1 gdtools-0.2.0/gdtools/src/versions.cpp | 12 gdtools-0.2.0/gdtools/tests/testthat/helper-fontconfig.R | 5 31 files changed, 104 insertions(+), 410 deletions(-)
More information about distributions3 at CRAN
Permanent link
Title: Blind Source Separation and Supervised Dimension Reduction for
Time Series
Description: Different estimators are provided to solve the blind source separation problem for multivariate time series with stochastic volatility (Matilainen, Nordhausen and Oja (2015) <doi:10.1016/j.spl.2015.04.033>; Matilainen, Miettinen, Nordhausen, Oja and Taskinen (2017) <doi:10.17713/ajs.v46i3-4.671>) and supervised dimension reduction problem for multivariate time series (Matilainen, Croux, Nordhausen and Oja (2017) <doi:10.1016/j.ecosta.2017.04.002>). Different functions based on AMUSE and SOBI are also provided for estimating the dimension of the white noise subspace.
Author: Markus Matilainen, Christophe Croux, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen, Joni Virta
Maintainer: Markus Matilainen <markus.matilainen@outlook.com>
Diff between tsBSS versions 0.5.2 dated 2018-10-09 and 0.5.3 dated 2019-09-03
tsBSS-0.5.2/tsBSS/R/AMUSEasymp.r |only tsBSS-0.5.2/tsBSS/R/CKKwrap.R |only tsBSS-0.5.2/tsBSS/R/PVCwrap.R |only tsBSS-0.5.2/tsBSS/R/TIKwrap.R |only tsBSS-0.5.2/tsBSS/R/TSwrap.R |only tsBSS-0.5.2/tsBSS/R/lbwrap.R |only tsBSS-0.5.2/tsBSS/man/coef.summary.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/components.summary.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/components.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/plot.summary.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/plot.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/print.bssvol.Rd |only tsBSS-0.5.2/tsBSS/man/print.lbtest.Rd |only tsBSS-0.5.2/tsBSS/man/print.summary.tssdr.Rd |only tsBSS-0.5.2/tsBSS/man/print.tssdr.Rd |only tsBSS-0.5.3/tsBSS/DESCRIPTION | 14 tsBSS-0.5.3/tsBSS/MD5 | 95 +--- tsBSS-0.5.3/tsBSS/NAMESPACE | 50 ++ tsBSS-0.5.3/tsBSS/R/AMUSEasymp.R |only tsBSS-0.5.3/tsBSS/R/AMUSEboot.R | 245 +++++------ tsBSS-0.5.3/tsBSS/R/AMUSEladle.R | 115 +++-- tsBSS-0.5.3/tsBSS/R/FixNA.R | 90 +++- tsBSS-0.5.3/tsBSS/R/LADLEinternal.R | 94 +--- tsBSS-0.5.3/tsBSS/R/PVC.R | 75 ++- tsBSS-0.5.3/tsBSS/R/SOBIasymp.R | 71 ++- tsBSS-0.5.3/tsBSS/R/SOBIboot.R | 232 +++++------ tsBSS-0.5.3/tsBSS/R/SOBIladle.R | 73 ++- tsBSS-0.5.3/tsBSS/R/gFOBI.R | 71 ++- tsBSS-0.5.3/tsBSS/R/gJADE.R | 133 +++--- tsBSS-0.5.3/tsBSS/R/gSOBI.R | 116 ++++- tsBSS-0.5.3/tsBSS/R/lagdir.R | 19 tsBSS-0.5.3/tsBSS/R/lbtest.R | 25 - tsBSS-0.5.3/tsBSS/R/summary.tssdr.R | 20 tsBSS-0.5.3/tsBSS/R/tssdr.R | 101 +++- tsBSS-0.5.3/tsBSS/R/vSOBI.R | 83 ++- tsBSS-0.5.3/tsBSS/inst/ChangeLog | 26 + tsBSS-0.5.3/tsBSS/man/AMUSEasymp.Rd | 37 + tsBSS-0.5.3/tsBSS/man/AMUSEboot.Rd | 47 +- tsBSS-0.5.3/tsBSS/man/AMUSEladle.Rd | 44 +- tsBSS-0.5.3/tsBSS/man/FixNA.Rd | 44 +- tsBSS-0.5.3/tsBSS/man/PVC.Rd | 50 +- tsBSS-0.5.3/tsBSS/man/SOBIasymp.Rd | 36 + tsBSS-0.5.3/tsBSS/man/SOBIboot.Rd | 87 ++-- tsBSS-0.5.3/tsBSS/man/SOBIladle.Rd | 54 +- tsBSS-0.5.3/tsBSS/man/WeeklyReturnsData.Rd | 23 - tsBSS-0.5.3/tsBSS/man/bssvol-class.Rd |only tsBSS-0.5.3/tsBSS/man/gFOBI.Rd | 45 +- tsBSS-0.5.3/tsBSS/man/gJADE.Rd | 42 +- tsBSS-0.5.3/tsBSS/man/gSOBI.Rd | 62 ++ tsBSS-0.5.3/tsBSS/man/lbtest.Rd | 43 +- tsBSS-0.5.3/tsBSS/man/summary.tssdr.Rd | 38 + tsBSS-0.5.3/tsBSS/man/tsBSS-package.Rd | 38 - tsBSS-0.5.3/tsBSS/man/tssdr.Rd | 64 ++- tsBSS-0.5.3/tsBSS/man/vSOBI.Rd | 42 +- tsBSS-0.5.3/tsBSS/src/bb.c | 21 - tsBSS-0.5.3/tsBSS/src/tsBSS.cpp | 460 +++++++--------------- tsBSS-0.5.3/tsBSS/src/tsBSS.h | 2 57 files changed, 1748 insertions(+), 1279 deletions(-)
Title: Apply Functions to Multiple Multidimensional Arrays or Vectors
Description: The base apply function and its variants, as well as the related
functions in the 'plyr' package, typically apply user-defined functions to a
single argument (or a list of vectorized arguments in the case of mapply). The
'multiApply' package extends this paradigm with its only function, Apply, which
efficiently applies functions taking one or a list of multiple unidimensional
or multidimensional arrays (or combinations thereof) as input. The input
arrays can have different numbers of dimensions as well as different dimension
lengths, and the applied function can return one or a list of unidimensional or
multidimensional arrays as output. This saves development time by preventing the
R user from writing often error-prone and memory-inefficient loops dealing with
multiple complex arrays. Also, a remarkable feature of Apply is the transparent
use of multi-core through its parameter 'ncores'. In contrast to the base apply
function, this package suggests the use of 'target dimensions' as opposite
to the 'margins' for specifying the dimensions relevant to the function to be
applied.
Author: BSC-CNS [aut, cph],
Nicolau Manubens [aut],
Alasdair Hunter [aut],
Nuria Perez [cre]
Maintainer: Nuria Perez <nuria.perez@bsc.es>
Diff between multiApply versions 2.0.1 dated 2018-11-23 and 2.1.1 dated 2019-09-03
DESCRIPTION | 8 +- MD5 | 12 +-- NAMESPACE | 1 R/Apply.R | 160 +++++++++++++++++++++++++++++++++++++--- R/zzz.R | 5 + man/Apply.Rd | 14 ++- tests/testthat/test-use-cases.R | 106 ++++++++++++++++++++++++++ 7 files changed, 280 insertions(+), 26 deletions(-)
Title: Data and Functions for the Book Modern Statistical Graphics
Description: A companion to the Chinese book ``Modern Statistical Graphics''.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Lijia Yu [ctb],
Xiangyun Huang [ctb],
Peng Zhao [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between MSG versions 0.3 dated 2016-02-12 and 0.4 dated 2019-09-03
MSG-0.3/MSG/NEWS |only MSG-0.4/MSG/DESCRIPTION | 34 +++++-- MSG-0.4/MSG/MD5 | 98 +++++++++++----------- MSG-0.4/MSG/NAMESPACE | 2 MSG-0.4/MSG/NEWS.md |only MSG-0.4/MSG/R/MSG-package.R | 2 MSG-0.4/MSG/R/andrews_curve.R | 2 MSG-0.4/MSG/README.md | 2 MSG-0.4/MSG/demo/ChinaPop.R | 35 +++++--- MSG-0.4/MSG/demo/Napoleon.R | 22 ++--- MSG-0.4/MSG/demo/SongWordsNet.R | 40 +++++---- MSG-0.4/MSG/demo/alphaDemo.R | 10 +- MSG-0.4/MSG/demo/cdplotDemo.R | 13 +-- MSG-0.4/MSG/demo/contourPop.R | 8 + MSG-0.4/MSG/demo/eqMaps.R | 16 ++- MSG-0.4/MSG/demo/float_pie.R | 36 +++++--- MSG-0.4/MSG/demo/gradArrows1.R | 134 ++++++++++++++++--------------- MSG-0.4/MSG/demo/gradArrows2.R | 127 ++++++++++++++--------------- MSG-0.4/MSG/demo/kaleidoscope.R | 8 - MSG-0.4/MSG/demo/layout_margin.R | 22 ++--- MSG-0.4/MSG/demo/mouse_move.R | 11 +- MSG-0.4/MSG/demo/pointArts.R | 4 MSG-0.4/MSG/demo/princomp.R | 117 ++++++++++++++------------- MSG-0.4/MSG/demo/signSTAT.R | 45 ++++++---- MSG-0.4/MSG/demo/subplot.R | 97 ++++++++++++---------- MSG-0.4/MSG/demo/symbols_all.R | 18 +--- MSG-0.4/MSG/demo/volcano.R | 17 +++ MSG-0.4/MSG/demo/xsplineDemo.R | 38 ++++---- MSG-0.4/MSG/inst/extdata/AgriComp.R | 76 ++++++++--------- MSG-0.4/MSG/inst/extdata/HighFreq100.rda |binary MSG-0.4/MSG/man/BinormCircle.Rd | 1 MSG-0.4/MSG/man/ChinaLifeEdu.Rd | 1 MSG-0.4/MSG/man/Export.USCN.Rd | 1 MSG-0.4/MSG/man/MSG-package.Rd | 3 MSG-0.4/MSG/man/PlantCounts.Rd | 1 MSG-0.4/MSG/man/andrews_curve.Rd | 9 +- MSG-0.4/MSG/man/assists.Rd | 1 MSG-0.4/MSG/man/canabalt.Rd | 1 MSG-0.4/MSG/man/char_gen.Rd | 1 MSG-0.4/MSG/man/cn_vs_us.Rd | 3 MSG-0.4/MSG/man/cut_plot.Rd | 1 MSG-0.4/MSG/man/eq2010.Rd | 1 MSG-0.4/MSG/man/gov.cn.pct.Rd | 1 MSG-0.4/MSG/man/heart_curve.Rd | 1 MSG-0.4/MSG/man/murcia.Rd | 1 MSG-0.4/MSG/man/music.Rd | 1 MSG-0.4/MSG/man/quake6.Rd | 1 MSG-0.4/MSG/man/t.diff.Rd | 1 MSG-0.4/MSG/man/tukeyCount.Rd | 1 MSG-0.4/MSG/man/tvearn.Rd | 1 MSG-0.4/MSG/man/vec2col.Rd | 1 51 files changed, 588 insertions(+), 479 deletions(-)
Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, endogenous targeting and model renormalization.
Author: Andrea Luciani [aut, cre],
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
Diff between bimets versions 1.4.0 dated 2019-06-06 and 1.4.1 dated 2019-09-03
DESCRIPTION | 8 - MD5 | 82 +++++++-------- NEWS.md | 47 ++++---- R/bimets_model_functions.R | 16 +-- R/bimets_ts_functions.R | 42 ++++---- README.md | 28 ++--- build/vignette.rds |binary data/bimets_12F_YP2D__.RData |binary data/bimets_12L_YP2D__.RData |binary data/bimets_12_D2YP__.RData |binary data/bimets_1F_YP2D__.RData |binary data/bimets_1L_YP2D__.RData |binary data/bimets_1_D2YP__.RData |binary data/bimets_24F_YP2D__.RData |binary data/bimets_24L_YP2D__.RData |binary data/bimets_24_D2YP__.RData |binary data/bimets_2F_YP2D__.RData |binary data/bimets_2L_YP2D__.RData |binary data/bimets_2_D2YP__.RData |binary data/bimets_366_D2YP__.RData |binary data/bimets_366_YP2D__.RData |binary data/bimets_36F_YP2D__.RData |binary data/bimets_36L_YP2D__.RData |binary data/bimets_36_D2YP__.RData |binary data/bimets_3F_YP2D__.RData |binary data/bimets_3L_YP2D__.RData |binary data/bimets_3_D2YP__.RData |binary data/bimets_4F_YP2D__.RData |binary data/bimets_4L_YP2D__.RData |binary data/bimets_4_D2YP__.RData |binary data/bimets_53F_YP2D__.RData |binary data/bimets_53L_YP2D__.RData |binary data/bimets_53_D2YP__.RData |binary data/bimets_static_TD90__.RData |binary data/bimets_static_startYear___.RData |binary data/bimets_static_totalLength___.RData |binary inst/doc/bimets.R | 84 ++++++++-------- inst/doc/bimets.Rnw | 168 ++++++++++++++++---------------- inst/doc/bimets.pdf |binary man/MDL.Rd | 16 +-- man/bimets-package.Rd | 56 +++++----- vignettes/bimets.Rnw | 168 ++++++++++++++++---------------- 42 files changed, 360 insertions(+), 355 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre] (<https://orcid.org/0000-0002-7152-6654>),
Dean Attali [aut],
Benjamin Rich [aut] (provided summary stats tables tab code),
Michael Sachs [aut] (provided ggkm code)
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.1.3 dated 2019-04-10 and 0.1.4 dated 2019-09-03
DESCRIPTION | 6 MD5 | 39 NAMESPACE | 17 NEWS.md | 15 R/ggkm.R | 191 +- build/vignette.rds |binary inst/doc/AdditionalPlotsStats.html | 192 ++ inst/doc/ggquickeda.html | 192 ++ inst/shinyapp/rsconnect/rstudio.studyexplorer.io/samer.mouksassi/ggquickeda.dcf | 4 inst/shinyapp/server.R | 716 +++++++--- inst/shinyapp/ui.R | 110 + man/cloglog_trans.Rd |only man/cumhaz_trans.Rd |only man/dostep.Rd |only man/event_trans.Rd |only man/geom_km.Rd | 15 man/geom_kmband.Rd | 21 man/geom_kmticks.Rd | 15 man/ggquickeda-ggproto.Rd |only man/merge_steps.Rd |only man/stairstepn.Rd |only man/stat_km.Rd | 25 man/stat_kmband.Rd | 48 man/stat_kmticks.Rd | 20 24 files changed, 1222 insertions(+), 404 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.11.0 dated 2019-07-01 and 0.12.0 dated 2019-09-03
ggeffects-0.11.0/ggeffects/R/ggaverage.R |only ggeffects-0.11.0/ggeffects/R/utils_expand_data_to_grid.R |only ggeffects-0.11.0/ggeffects/R/utils_parse_vars_arguments.R |only ggeffects-0.11.0/ggeffects/man/figures/README-example-1.png |only ggeffects-0.11.0/ggeffects/man/figures/README-example-2.png |only ggeffects-0.11.0/ggeffects/man/figures/README-example-3.png |only ggeffects-0.11.0/ggeffects/man/figures/README-example-4.png |only ggeffects-0.11.0/ggeffects/man/rprs_values.Rd |only ggeffects-0.12.0/ggeffects/DESCRIPTION | 12 ggeffects-0.12.0/ggeffects/MD5 | 189 ++-- ggeffects-0.12.0/ggeffects/NAMESPACE | 4 ggeffects-0.12.0/ggeffects/NEWS.md | 97 -- ggeffects-0.12.0/ggeffects/R/emm.R | 5 ggeffects-0.12.0/ggeffects/R/get_predictions_MixMod.R | 15 ggeffects-0.12.0/ggeffects/R/get_predictions_clm.R | 3 ggeffects-0.12.0/ggeffects/R/get_predictions_clm2.R | 5 ggeffects-0.12.0/ggeffects/R/get_predictions_clmm.R | 15 ggeffects-0.12.0/ggeffects/R/get_predictions_coxph.R | 6 ggeffects-0.12.0/ggeffects/R/get_predictions_gam.R | 131 ++ ggeffects-0.12.0/ggeffects/R/get_predictions_gam2.R | 6 ggeffects-0.12.0/ggeffects/R/get_predictions_gamlss.R | 6 ggeffects-0.12.0/ggeffects/R/get_predictions_gee.R | 3 ggeffects-0.12.0/ggeffects/R/get_predictions_generic2.R | 21 ggeffects-0.12.0/ggeffects/R/get_predictions_glm.R | 4 ggeffects-0.12.0/ggeffects/R/get_predictions_glmRob.R | 4 ggeffects-0.12.0/ggeffects/R/get_predictions_glmmTMB.R | 10 ggeffects-0.12.0/ggeffects/R/get_predictions_lm.R | 6 ggeffects-0.12.0/ggeffects/R/get_predictions_lme.R | 8 ggeffects-0.12.0/ggeffects/R/get_predictions_merMod.R | 4 ggeffects-0.12.0/ggeffects/R/get_predictions_multinom.R | 6 ggeffects-0.12.0/ggeffects/R/get_predictions_polr.R | 12 ggeffects-0.12.0/ggeffects/R/get_predictions_stan.R | 4 ggeffects-0.12.0/ggeffects/R/get_predictions_survival.R | 2 ggeffects-0.12.0/ggeffects/R/get_predictions_svyglmnb.R | 4 ggeffects-0.12.0/ggeffects/R/get_predictions_vglm.R | 84 + ggeffects-0.12.0/ggeffects/R/get_predictions_wbm.R | 2 ggeffects-0.12.0/ggeffects/R/get_predictions_zeroinfl.R | 24 ggeffects-0.12.0/ggeffects/R/getter.R | 8 ggeffects-0.12.0/ggeffects/R/ggeffect.R | 39 ggeffects-0.12.0/ggeffects/R/ggemmeans.R | 55 - ggeffects-0.12.0/ggeffects/R/ggemmeans_zi_predictions.R | 4 ggeffects-0.12.0/ggeffects/R/ggpredict.R | 195 +--- ggeffects-0.12.0/ggeffects/R/moderator_pattern.R | 13 ggeffects-0.12.0/ggeffects/R/new_data.R | 2 ggeffects-0.12.0/ggeffects/R/plot.R | 130 -- ggeffects-0.12.0/ggeffects/R/predict_standard_errors_from_vcov.R | 38 ggeffects-0.12.0/ggeffects/R/predict_zero_inflation.R | 40 ggeffects-0.12.0/ggeffects/R/predictions.R | 111 +- ggeffects-0.12.0/ggeffects/R/pretty_range.R | 57 - ggeffects-0.12.0/ggeffects/R/print.R | 126 +- ggeffects-0.12.0/ggeffects/R/reshape_helpers.R | 96 -- ggeffects-0.12.0/ggeffects/R/themes.R | 4 ggeffects-0.12.0/ggeffects/R/utils.R | 107 -- ggeffects-0.12.0/ggeffects/R/utils_colors.R |only ggeffects-0.12.0/ggeffects/R/utils_get_cleaned_terms.R |only ggeffects-0.12.0/ggeffects/R/utils_get_data_grid.R |only ggeffects-0.12.0/ggeffects/R/utils_get_representative_values.R |only ggeffects-0.12.0/ggeffects/R/utils_ggpredict.R | 4 ggeffects-0.12.0/ggeffects/R/utils_handle_labels.R | 13 ggeffects-0.12.0/ggeffects/R/utils_model_function.R | 176 +-- ggeffects-0.12.0/ggeffects/R/utils_set_attr.R | 7 ggeffects-0.12.0/ggeffects/README.md | 279 +++-- ggeffects-0.12.0/ggeffects/build/partial.rdb |binary ggeffects-0.12.0/ggeffects/build/vignette.rds |binary ggeffects-0.12.0/ggeffects/inst/doc/ggeffects.R | 13 ggeffects-0.12.0/ggeffects/inst/doc/ggeffects.Rmd | 42 ggeffects-0.12.0/ggeffects/inst/doc/ggeffects.html | 469 ++++------ ggeffects-0.12.0/ggeffects/inst/doc/introduction_effectsatvalues.html | 40 ggeffects-0.12.0/ggeffects/inst/doc/introduction_plotcustomize.html | 20 ggeffects-0.12.0/ggeffects/inst/doc/introduction_plotmethod.R | 17 ggeffects-0.12.0/ggeffects/inst/doc/introduction_plotmethod.Rmd | 46 ggeffects-0.12.0/ggeffects/inst/doc/introduction_plotmethod.html | 207 ++-- ggeffects-0.12.0/ggeffects/inst/doc/introduction_randomeffects.R | 3 ggeffects-0.12.0/ggeffects/inst/doc/introduction_randomeffects.Rmd | 5 ggeffects-0.12.0/ggeffects/inst/doc/introduction_randomeffects.html | 121 +- ggeffects-0.12.0/ggeffects/inst/doc/practical_logisticmixedmodel.html | 22 ggeffects-0.12.0/ggeffects/inst/doc/technical_differencepredictemmeans.html | 10 ggeffects-0.12.0/ggeffects/inst/doc/technical_stata.html | 14 ggeffects-0.12.0/ggeffects/man/emm.Rd | 6 ggeffects-0.12.0/ggeffects/man/figures/unnamed-chunk-3-1.png |only ggeffects-0.12.0/ggeffects/man/figures/unnamed-chunk-4-1.png |only ggeffects-0.12.0/ggeffects/man/figures/unnamed-chunk-5-1.png |only ggeffects-0.12.0/ggeffects/man/figures/unnamed-chunk-6-1.png |only ggeffects-0.12.0/ggeffects/man/ggpredict.Rd | 151 +-- ggeffects-0.12.0/ggeffects/man/plot.Rd | 64 - ggeffects-0.12.0/ggeffects/man/pretty_range.Rd | 13 ggeffects-0.12.0/ggeffects/man/values_at.Rd |only ggeffects-0.12.0/ggeffects/tests/testthat/test-clm.R | 12 ggeffects-0.12.0/ggeffects/tests/testthat/test-clm2.R | 13 ggeffects-0.12.0/ggeffects/tests/testthat/test-clmm.R | 12 ggeffects-0.12.0/ggeffects/tests/testthat/test-gamm.R | 31 ggeffects-0.12.0/ggeffects/tests/testthat/test-glm.R | 6 ggeffects-0.12.0/ggeffects/tests/testthat/test-glmer.R | 12 ggeffects-0.12.0/ggeffects/tests/testthat/test-linear-models.R | 6 ggeffects-0.12.0/ggeffects/tests/testthat/test-lmer.R | 6 ggeffects-0.12.0/ggeffects/tests/testthat/test-nlme.R | 5 ggeffects-0.12.0/ggeffects/tests/testthat/test-plot.R | 8 ggeffects-0.12.0/ggeffects/tests/testthat/test-poisson.R | 6 ggeffects-0.12.0/ggeffects/tests/testthat/test-survey.R | 5 ggeffects-0.12.0/ggeffects/tests/testthat/test-svyglmnb.R | 5 ggeffects-0.12.0/ggeffects/tests/testthat/test-vglm.R | 46 ggeffects-0.12.0/ggeffects/vignettes/ggeffects.Rmd | 42 ggeffects-0.12.0/ggeffects/vignettes/introduction_plotmethod.Rmd | 46 ggeffects-0.12.0/ggeffects/vignettes/introduction_randomeffects.Rmd | 5 104 files changed, 1889 insertions(+), 1836 deletions(-)
Title: Access and Summarise World Health Organisation Tuberculosis data
Description: Quickly and easily import analysis ready
Tuberculosis (TB) burden data, from the World Health Organisation
(WHO), into R. The aim of getTBinR is to allow researchers, and other
interested individuals, to quickly and easily gain access to a
detailed TB data set and to start using it to derive key insights. It
provides a consistent set of tools that can be used to rapidly
evaluate hypotheses on a widely used data set before they are explored
further using more complex methods or more detailed data. These tools
include: generic plotting and mapping functions; a data dictionary
search tool; an interactive shiny dashboard; and an automated, country
level, TB report. For newer R users, this package reduces the barrier
to entry by handling data import, munging, and visualisation. All
plotting and mapping functions are built with ggplot2 so can be
readily extended.
Author: Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>)
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between getTBinR versions 0.6.1 dated 2019-06-05 and 0.7.0 dated 2019-09-03
DESCRIPTION | 20 ++-- MD5 | 49 +++++----- NAMESPACE | 19 +++- NEWS.md | 13 ++ R/available_datasets.R | 2 R/get_tb_burden.R | 15 ++- R/map_tb_burden.R | 19 ++-- R/plot_tb_burden.R | 17 ++- R/plot_tb_burden_overview.R | 11 +- R/plot_tb_burden_summary.R | 15 ++- R/run_tb_dashboard.R | 4 README.md | 90 +++++++++---------- build/vignette.rds |binary data/available_datasets.rda |binary inst/doc/case_fatality_rate.html | 45 +++++---- inst/doc/case_study_global_trends.html | 22 ++-- inst/doc/intro.html | 118 +++++++++++++------------ inst/rmarkdown/country-report.Rmd | 6 - man/available_datasets.Rd | 2 man/figures/map-tb-incidence-eur-1.png |binary man/figures/plot-tb-incidence-eur-1.png |binary man/figures/plot-tb-incidence-eur-per-1.png |binary man/figures/plot-tb-incidence-uk-1.png |binary man/figures/plot-tb-incidence-uk-compare-1.png |binary man/get_tb_burden.Rd | 2 tests/testthat/test-render_country_report.R |only 26 files changed, 275 insertions(+), 194 deletions(-)
Title: Mesh Generation and Surface Tessellation
Description: Makes the 'Qhull' library <http://www.qhull.org>
available in R, in a similar manner as in Octave and MATLAB. Qhull
computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2D, 3D, 4D, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does not
support constrained Delaunay triangulations, or mesh generation of
non-convex objects, but the package does include some R functions
that allow for this.
Author: Jean-Romain Roussel [cph, ctb] (wrote tsearch function with QuadTrees),
C. B. Barber [cph],
Kai Habel [cph, aut],
Raoul Grasman [cph, aut],
Robert B. Gramacy [cph, aut],
Pavlo Mozharovskyi [cph, aut],
David C. Sterratt [cph, aut, cre]
(<https://orcid.org/0000-0001-9092-9099>)
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between geometry versions 0.4.3 dated 2019-08-21 and 0.4.4 dated 2019-09-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 10 +++++++++- inst/doc/qhull-eg.pdf |binary src/geometry_init.c | 18 +++++++++--------- 5 files changed, 26 insertions(+), 18 deletions(-)
Title: Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Description: The usual distribution functions, maximum likelihood inference and
model diagnostics for univariate stationary extreme value mixture models
are provided. Kernel density estimation including various boundary
corrected kernel density estimation methods and a wide choice of kernels,
with cross-validation likelihood based bandwidth estimator.
Reasonable consistency with the base functions in the 'evd' package is
provided, so that users can safely interchange most code.
Author: Carl Scarrott, Yang Hu and Alfadino Akbar, University of Canterbury
Maintainer: Carl Scarrott <carl.scarrott@canterbury.ac.nz>
Diff between evmix versions 2.11 dated 2018-06-06 and 2.12 dated 2019-09-03
DESCRIPTION | 11 - MD5 | 280 +++++++++++++-------------- R/dbckden.r | 7 R/dbckdengpd.r | 7 R/dbckdengpdcon.r | 7 R/dbetagpd.r | 4 R/dbetagpdcon.r | 4 R/ddwm.r | 3 R/dgammagpd.r | 7 R/dgammagpdcon.r | 7 R/dgkg.r | 7 R/dgkgcon.r | 7 R/dgng.r | 6 R/dgngcon.r | 6 R/dgpd.r | 3 R/dhpd.r | 12 - R/dhpdcon.r | 12 - R/ditmgng.r | 5 R/ditmnormgpd.r | 4 R/ditmweibullgpd.r | 5 R/dkden.r | 8 R/dkdengpd.r | 8 R/dkdengpdcon.r | 8 R/dlognormgpd.r | 5 R/dlognormgpdcon.r | 5 R/dmgamma.r | 7 R/dmgammagpd.r | 10 R/dmgammagpdcon.r | 8 R/dnormgpd.r | 5 R/dnormgpdcon.r | 5 R/dpsden.r | 4 R/dpsdengpd.r | 4 R/dweibullgpd.r | 5 R/dweibullgpdcon.r | 5 R/evmix-package.r | 8 R/fbckden.r | 7 R/fbckdengpd.r | 11 - R/fbckdengpdcon.r | 11 - R/fbetagpd.r | 8 R/fbetagpdcon.r | 6 R/fdwm.r | 3 R/fgammagpd.r | 7 R/fgammagpdcon.r | 9 R/fgkg.r | 7 R/fgkgcon.r | 7 R/fgng.r | 5 R/fgngcon.r | 5 R/fgpd.r | 3 R/fhpd.r | 11 - R/fhpdcon.r | 11 - R/fitmgng.r | 5 R/fitmnormgpd.r | 4 R/fitmweibullgpd.r | 4 R/fkden.r | 6 R/fkdengpd.r | 10 R/fkdengpdcon.r | 10 R/flognormgpd.r | 7 R/flognormgpdcon.r | 7 R/fmgamma.r | 8 R/fmgammagpd.r | 8 R/fmgammagpdcon.r | 8 R/fnormgpd.r | 7 R/fnormgpdcon.r | 7 R/fpsden.r | 3 R/fpsdengpd.r | 28 +- R/fweibullgpd.r | 7 R/fweibullgpdcon.r | 7 inst/doc/Rd2.pdf |binary man/bckden.Rd | 78 ++++--- man/bckdengpd.Rd | 68 +++--- man/bckdengpdcon.Rd | 70 +++--- man/betagpd.Rd | 60 ++--- man/betagpdcon.Rd | 47 +--- man/checking.Rd | 17 - man/dwm.Rd | 24 -- man/evmix-package.Rd | 7 man/evmix.diag.Rd | 21 -- man/fbckden.Rd | 54 +++-- man/fbckdengpd.Rd | 72 +++---- man/fbckdengpdcon.Rd | 61 +++--- man/fbetagpd.Rd | 48 +--- man/fbetagpdcon.Rd | 41 +--- man/fdwm.Rd | 10 man/fgammagpd.Rd | 53 ++--- man/fgammagpdcon.Rd | 52 ++--- man/fgkg.Rd | 61 +++--- man/fgkgcon.Rd | 57 +++-- man/fgng.Rd | 52 ++--- man/fgngcon.Rd | 47 ++-- man/fgpd.Rd | 15 - man/fhpd.Rd | 33 ++- man/fhpdcon.Rd | 54 ++--- man/fitmgng.Rd | 47 +--- man/fitmnormgpd.Rd | 46 +--- man/fitmweibullgpd.Rd | 47 +--- man/fkden.Rd | 41 ++-- man/fkdengpd.Rd | 75 ++++--- man/fkdengpdcon.Rd | 72 ++++--- man/flognormgpd.Rd | 46 ++-- man/flognormgpdcon.Rd | 47 ++-- man/fmgamma.Rd | 40 ++- man/fmgammagpd.Rd | 77 ++----- man/fmgammagpdcon.Rd | 76 ++----- man/fnormgpd.Rd | 52 ++--- man/fnormgpdcon.Rd | 55 ++--- man/fpsden.Rd | 34 --- man/fpsdengpd.Rd | 46 +--- man/fweibullgpd.Rd | 54 ++--- man/fweibullgpdcon.Rd | 42 +--- man/gammagpd.Rd | 55 ++--- man/gammagpdcon.Rd | 54 ++--- man/gkg.Rd | 63 +++--- man/gkgcon.Rd | 75 +++---- man/gng.Rd | 77 ++++--- man/gngcon.Rd | 73 +++---- man/gpd.Rd | 26 -- man/hillplot.Rd | 11 - man/hpd.Rd | 54 ++--- man/hpdcon.Rd | 57 +++-- man/itmgng.Rd | 48 +--- man/itmnormgpd.Rd | 50 ++-- man/itmweibullgpd.Rd | 69 +++--- man/kden.Rd | 60 +++-- man/kdengpd.Rd | 82 ++++---- man/kdengpdcon.Rd | 57 +++-- man/kernels.Rd | 507 -------------------------------------------------- man/kfun.Rd | 9 man/lognormgpd.Rd | 44 ++-- man/lognormgpdcon.Rd | 52 ++--- man/mgamma.Rd | 48 ++-- man/mgammagpd.Rd | 77 +++---- man/mgammagpdcon.Rd | 45 ++-- man/mrlplot.Rd | 8 man/normgpd.Rd | 46 ++-- man/normgpdcon.Rd | 57 ++--- man/pickandsplot.Rd | 6 man/psden.Rd | 35 +-- man/psdengpd.Rd | 53 ++--- man/tcplot.Rd | 29 +- man/weibullgpd.Rd | 68 +++--- man/weibullgpdcon.Rd | 42 +--- 141 files changed, 2150 insertions(+), 2632 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect selection methods in SAS, based on the change in
log-likelihood or its significance, Akaike's Information Criterion, or the Bayesian
Information Criterion.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 1.2 dated 2019-08-27 and 1.2.1 dated 2019-09-03
ChangeLog | 9 +++++++++ DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/buildmer-private.R | 4 +++- R/buildmer.R | 4 ++-- R/directions.R | 11 ++++++++++- R/utility.R | 11 +++++------ inst/doc/buildmer.pdf |binary man/buildcustom.Rd | 2 +- 9 files changed, 41 insertions(+), 22 deletions(-)
Title: Draw Three Dimensional Predict Plot Using Package 'rgl'
Description: Draw 2 dimensional and three dimensional plot for multiple regression models using package 'ggplot2' and 'rgl'.
Supports linear models (lm), generalized linear models (glm) and local polynomial regression fittings (loess).
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between predict3d versions 0.1.0 dated 2019-03-06 and 0.1.3.3 dated 2019-09-03
DESCRIPTION | 10 MD5 | 49 NAMESPACE | 12 NEWS.md | 46 R/add_lines.R |only R/ggPredict.R | 583 +++- R/predict3d.R | 53 R/restoreData3.R |only README.md | 17 build/vignette.rds |binary inst/doc/predict3d.R | 9 inst/doc/predict3d.Rmd | 17 inst/doc/predict3d.html | 6183 +++++++++++++++++++++++++++++++++++++++++++++++- man/add_lines.Rd |only man/calEquation.Rd |only man/expand.grid2.Rd |only man/fit2newdata.Rd | 13 man/getNewFormula.Rd | 8 man/ggPredict.Rd | 26 man/gg_color_hue.Rd |only man/number2group.Rd | 4 man/predict3d.Rd | 17 man/restoreData3.Rd |only man/restoreNames.Rd | 2 man/revOperator.Rd |only man/seekNamesDf.Rd |only man/slope2angle.Rd | 13 man/string2pattern.Rd |only man/theme_bw2.Rd |only vignettes/predict3d.Rmd | 17 vignettes/rsconnect |only 31 files changed, 6787 insertions(+), 292 deletions(-)
Title: Locally Gaussian Distributions: Estimation and Methods
Description: An implementation of locally Gaussian distributions. It provides methods for
implementing locally Gaussian multivariate density estimation, conditional density
estimation, various independence tests for iid and time series data, a test for conditional
independence and a test for financial contagion.
Author: Håkon Otneim [aut, cre]
Maintainer: Håkon Otneim <hakon.otneim@nhh.no>
Diff between lg versions 0.3.0 dated 2018-11-30 and 0.4.0 dated 2019-09-03
DESCRIPTION | 14 - MD5 | 37 +- NAMESPACE | 2 NEWS.md | 8 R/bandwidth_selection.R | 157 ++++++++++-- R/checks.R | 24 + R/density_estimation.R | 386 +++++++++++++++++++++++++------ R/main_function.R | 19 + R/partial_correlation.R | 2 R/test_conditional_independence.R | 30 +- man/bw_select_cv_bivariate.Rd | 6 man/bw_select_cv_trivariate.Rd |only man/check_bw_trivariate.Rd |only man/check_est_method.Rd | 2 man/ci_test.Rd | 9 man/ci_test_statistic.Rd | 6 man/dlg.Rd | 9 man/dlg_trivariate.Rd |only man/lg_main.Rd | 13 - man/partial_cor.Rd | 2 tests/testthat/test_density_estimation.R | 2 21 files changed, 576 insertions(+), 152 deletions(-)
Title: Generalized Random Forests
Description: A pluggable package for forest-based statistical estimation and inference.
GRF currently provides methods for non-parametric least-squares regression,
quantile regression, and treatment effect estimation (optionally using instrumental
variables).
Author: Julie Tibshirani [aut, cre],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [ctb],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Julie Tibshirani <jtibs@cs.stanford.edu>
Diff between grf versions 0.10.3 dated 2019-05-27 and 0.10.4 dated 2019-09-03
DESCRIPTION | 42 MD5 | 305 +++--- NAMESPACE | 3 R/RcppExports.R | 28 R/analysis_tools.R | 186 ++- R/average_late.R |only R/average_partial_effect.R | 104 +- R/average_treatment_effect.R | 205 ++-- R/boosted_regression_forest.R | 225 ++-- R/causal_forest.R | 506 +++++----- R/causal_tuning.R | 309 ++++-- R/custom_forest.R | 149 +- R/forest_summary.R | 78 - R/input_utilities.R | 105 +- R/instrumental_forest.R | 284 +++-- R/local_linear_causal_tuning.R |only R/local_linear_forest.R | 244 ++-- R/local_linear_tuning.R | 70 - R/merge_forests.R | 36 R/plot.R | 100 + R/print.R | 173 +-- R/quantile_forest.R | 191 ++- R/regression_forest.R | 340 +++--- R/regression_tuning.R | 289 ++++- R/tuning_utilities.R | 46 man/average_late.Rd |only man/average_partial_effect.Rd | 17 man/average_treatment_effect.Rd | 19 man/boosted_regression_forest.Rd | 81 - man/causal_forest.Rd | 110 +- man/create_dot_body.Rd | 5 man/custom_forest.Rd | 50 man/export_graphviz.Rd | 1 man/get_sample_weights.Rd | 18 man/get_tree.Rd | 11 man/grf.Rd | 8 man/instrumental_forest.Rd | 49 man/leaf_stats.causal_forest.Rd |only man/leaf_stats.default.Rd |only man/leaf_stats.instrumental_forest.Rd |only man/leaf_stats.regression_forest.Rd |only man/ll_regression_forest.Rd | 60 - man/merge_forests.Rd | 15 man/plot.grf_tree.Rd | 16 man/predict.boosted_regression_forest.Rd | 22 man/predict.causal_forest.Rd | 27 man/predict.custom_forest.Rd | 15 man/predict.ll_regression_forest.Rd | 17 man/predict.quantile_forest.Rd | 17 man/predict.regression_forest.Rd | 21 man/quantile_forest.Rd | 60 - man/regression_forest.Rd | 75 - man/split_frequencies.Rd | 9 man/test_calibration.Rd | 11 man/tune_causal_forest.Rd | 74 - man/tune_ll_causal_forest.Rd |only man/tune_ll_regression_forest.Rd | 15 man/tune_regression_forest.Rd | 62 - man/variable_importance.Rd | 9 src/AnalysisToolsBindings.cpp | 21 src/CausalForestBindings.cpp | 76 - src/CustomForestBindings.cpp | 35 src/InstrumentalForestBindings.cpp | 33 src/QuantileForestBindings.cpp | 31 src/RcppData.cpp |only src/RcppData.h |only src/RcppExports.cpp | 67 - src/RcppUtilities.cpp | 39 src/RcppUtilities.h | 8 src/RegressionForestBindings.cpp | 51 - src/random |only src/src/analysis/SplitFrequencyComputer.cpp | 10 src/src/analysis/SplitFrequencyComputer.h | 11 src/src/commons/Data.cpp | 47 src/src/commons/Data.h | 30 src/src/commons/DefaultData.cpp | 25 src/src/commons/DefaultData.h | 14 src/src/commons/SparseData.cpp | 29 src/src/commons/SparseData.h | 14 src/src/commons/globals.h | 3 src/src/commons/utility.cpp | 17 src/src/commons/utility.h | 20 src/src/forest/Forest.cpp | 56 - src/src/forest/Forest.h | 32 src/src/forest/ForestOptions.cpp | 7 src/src/forest/ForestOptions.h | 3 src/src/forest/ForestPredictor.cpp | 26 src/src/forest/ForestPredictor.h | 19 src/src/forest/ForestPredictors.cpp | 55 - src/src/forest/ForestPredictors.h | 42 src/src/forest/ForestTrainer.cpp | 82 - src/src/forest/ForestTrainer.h | 23 src/src/forest/ForestTrainers.cpp | 61 - src/src/forest/ForestTrainers.h | 16 src/src/prediction/CustomPredictionStrategy.cpp | 20 src/src/prediction/CustomPredictionStrategy.h | 21 src/src/prediction/DefaultPredictionStrategy.h | 28 src/src/prediction/InstrumentalPredictionStrategy.cpp | 32 src/src/prediction/InstrumentalPredictionStrategy.h | 20 src/src/prediction/LLCausalPredictionStrategy.cpp | 204 +++- src/src/prediction/LLCausalPredictionStrategy.h | 28 src/src/prediction/LocalLinearPredictionStrategy.cpp | 44 src/src/prediction/LocalLinearPredictionStrategy.h | 22 src/src/prediction/ObjectiveBayesDebiaser.cpp | 9 src/src/prediction/ObjectiveBayesDebiaser.h | 5 src/src/prediction/OptimizedPredictionStrategy.h | 19 src/src/prediction/Prediction.cpp | 4 src/src/prediction/Prediction.h | 9 src/src/prediction/PredictionValues.cpp | 4 src/src/prediction/PredictionValues.h | 3 src/src/prediction/QuantilePredictionStrategy.cpp | 41 src/src/prediction/QuantilePredictionStrategy.h | 23 src/src/prediction/RegressionPredictionStrategy.cpp | 23 src/src/prediction/RegressionPredictionStrategy.h | 17 src/src/prediction/collector/DefaultPredictionCollector.cpp | 21 src/src/prediction/collector/DefaultPredictionCollector.h | 23 src/src/prediction/collector/OptimizedPredictionCollector.cpp | 27 src/src/prediction/collector/OptimizedPredictionCollector.h | 28 src/src/prediction/collector/PredictionCollector.h | 13 src/src/prediction/collector/SampleWeightComputer.cpp | 14 src/src/prediction/collector/SampleWeightComputer.h | 4 src/src/prediction/collector/TreeTraverser.cpp | 24 src/src/prediction/collector/TreeTraverser.h | 17 src/src/relabeling/CustomRelabelingStrategy.cpp | 11 src/src/relabeling/CustomRelabelingStrategy.h | 10 src/src/relabeling/InstrumentalRelabelingStrategy.cpp | 35 src/src/relabeling/InstrumentalRelabelingStrategy.h | 15 src/src/relabeling/NoopRelabelingStrategy.cpp | 17 src/src/relabeling/NoopRelabelingStrategy.h | 10 src/src/relabeling/QuantileRelabelingStrategy.cpp | 27 src/src/relabeling/QuantileRelabelingStrategy.h | 10 src/src/relabeling/RelabelingStrategy.h | 25 src/src/sampling/RandomSampler.cpp | 41 src/src/sampling/RandomSampler.h | 12 src/src/sampling/SamplingOptions.cpp | 9 src/src/sampling/SamplingOptions.h | 7 src/src/splitting/InstrumentalSplittingRule.cpp | 68 - src/src/splitting/InstrumentalSplittingRule.h | 24 src/src/splitting/ProbabilitySplittingRule.cpp | 54 - src/src/splitting/ProbabilitySplittingRule.h | 24 src/src/splitting/RegressionSplittingRule.cpp | 54 - src/src/splitting/RegressionSplittingRule.h | 28 src/src/splitting/SplittingRule.h | 12 src/src/splitting/factory/InstrumentalSplittingRuleFactory.cpp | 11 src/src/splitting/factory/InstrumentalSplittingRuleFactory.h | 11 src/src/splitting/factory/ProbabilitySplittingRuleFactory.cpp | 16 src/src/splitting/factory/ProbabilitySplittingRuleFactory.h | 10 src/src/splitting/factory/RegressionSplittingRuleFactory.cpp | 14 src/src/splitting/factory/RegressionSplittingRuleFactory.h | 11 src/src/splitting/factory/SplittingRuleFactory.h | 10 src/src/tree/Tree.cpp | 49 src/src/tree/Tree.h | 41 src/src/tree/TreeOptions.cpp | 13 src/src/tree/TreeOptions.h | 16 src/src/tree/TreeTrainer.cpp | 96 + src/src/tree/TreeTrainer.h | 39 tests/testthat.R | 2 tests/testthat/test_cran_smoke_test.R | 61 - 158 files changed, 4444 insertions(+), 3111 deletions(-)
Title: Statistical Reporting for Scientific Publications,
Epidemiological Studies and Clinical Trials
Description: Export to 'Microsoft Word' or R markdown documents nicely formatted tables of descriptive or inferential statistics. Can be used within the scope of clinical trials, or for any scientific publications. Descriptive tables for quantitative statistics (mean, median, max etc..) and/or qualitative statistics (frequencies and percentages) are available along with formatted tables of Least Square Means of Linear Models, Linear Mixed Models, Cox Models and Generalized Linear Mixed Models. It works mainly with 'emmeans' 'officer' and 'flextable' packages.
Author: Jean-Francois Collin
Maintainer: Jean-Francois Collin <jfcollin@live.fr>
Diff between ClinReport versions 0.9.1.13.1 dated 2019-08-07 and 0.9.1.14 dated 2019-09-03
ClinReport-0.9.1.13.1/ClinReport/inst/report.ae.R |only ClinReport-0.9.1.13.1/ClinReport/inst/transpose.desc.R |only ClinReport-0.9.1.14/ClinReport/DESCRIPTION | 13 - ClinReport-0.9.1.14/ClinReport/MD5 | 83 ++++--- ClinReport-0.9.1.14/ClinReport/NAMESPACE | 8 ClinReport-0.9.1.14/ClinReport/NEWS.md | 9 ClinReport-0.9.1.14/ClinReport/R/at.least.one.R |only ClinReport-0.9.1.14/ClinReport/R/check.x.R | 15 + ClinReport-0.9.1.14/ClinReport/R/data.R | 25 ++ ClinReport-0.9.1.14/ClinReport/R/define.key.R |only ClinReport-0.9.1.14/ClinReport/R/desc.R | 6 ClinReport-0.9.1.14/ClinReport/R/report.doc.R | 15 + ClinReport-0.9.1.14/ClinReport/R/report.lsmeans.R | 7 ClinReport-0.9.1.14/ClinReport/R/report.modelinfo.R | 60 +++++ ClinReport-0.9.1.14/ClinReport/R/report.quali.R | 26 +- ClinReport-0.9.1.14/ClinReport/R/report.quali.hlev.R |only ClinReport-0.9.1.14/ClinReport/R/report.quanti.R | 1 ClinReport-0.9.1.14/ClinReport/R/report.sessionInfo.R |only ClinReport-0.9.1.14/ClinReport/R/transpose.desc.R |only ClinReport-0.9.1.14/ClinReport/README.md | 6 ClinReport-0.9.1.14/ClinReport/data/adverse_event.rda |only ClinReport-0.9.1.14/ClinReport/inst/data.RData |only ClinReport-0.9.1.14/ClinReport/inst/data.creation.R | 25 ++ ClinReport-0.9.1.14/ClinReport/inst/dev_check_build.R | 2 ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_modify_outputs.R | 54 +++- ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_modify_outputs.Rmd | 111 +++++++-- ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_modify_outputs.html | 112 +++++++--- ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_vignette_get_started.R | 38 +++ ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_vignette_get_started.Rmd | 79 ++++++- ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_vignette_get_started.html | 101 +++++++-- ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_vignette_standard.Rmd | 6 ClinReport-0.9.1.14/ClinReport/inst/doc/clinreport_vignette_standard.html | 4 ClinReport-0.9.1.14/ClinReport/man/adverse_event.Rd |only ClinReport-0.9.1.14/ClinReport/man/at.least.one.Rd |only ClinReport-0.9.1.14/ClinReport/man/check.x.Rd | 4 ClinReport-0.9.1.14/ClinReport/man/datafake.Rd | 3 ClinReport-0.9.1.14/ClinReport/man/define.key.Rd |only ClinReport-0.9.1.14/ClinReport/man/desc.Rd | 4 ClinReport-0.9.1.14/ClinReport/man/report.doc.Rd | 13 + ClinReport-0.9.1.14/ClinReport/man/report.lsmeans.Rd | 6 ClinReport-0.9.1.14/ClinReport/man/report.modelinfo.Rd | 16 + ClinReport-0.9.1.14/ClinReport/man/report.quali.Rd | 2 ClinReport-0.9.1.14/ClinReport/man/report.quali.hlev.Rd |only ClinReport-0.9.1.14/ClinReport/man/report.quanti.Rd | 2 ClinReport-0.9.1.14/ClinReport/man/report.sessionInfo.Rd |only ClinReport-0.9.1.14/ClinReport/man/time_to_cure.Rd | 3 ClinReport-0.9.1.14/ClinReport/man/transpose.Rd |only ClinReport-0.9.1.14/ClinReport/vignettes/clinreport_modify_outputs.Rmd | 111 +++++++-- ClinReport-0.9.1.14/ClinReport/vignettes/clinreport_vignette_get_started.Rmd | 79 ++++++- ClinReport-0.9.1.14/ClinReport/vignettes/clinreport_vignette_standard.Rmd | 6 50 files changed, 852 insertions(+), 203 deletions(-)
Title: Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Description: Fits univariate Bayesian spatial regression models for large datasets using Nearest Neighbor Gaussian Processes (NNGP) detailed in Finley, Datta, Cook, Morton, Andersen, and Banerjee (2019) <doi:10.1080/10618600.2018.1537924> and Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091>.
Author: Andrew Finley [aut, cre],
Abhirup Datta [aut],
Sudipto Banerjee [aut]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spNNGP versions 0.1.1 dated 2017-07-21 and 0.1.2 dated 2019-09-03
spNNGP-0.1.1/spNNGP/data/CHM.rda |only spNNGP-0.1.1/spNNGP/man/CHM.rda.Rd |only spNNGP-0.1.2/spNNGP/DESCRIPTION | 19 - spNNGP-0.1.2/spNNGP/MD5 | 60 +++- spNNGP-0.1.2/spNNGP/NAMESPACE | 16 + spNNGP-0.1.2/spNNGP/R/PGLogit.R |only spNNGP-0.1.2/spNNGP/R/generics.R |only spNNGP-0.1.2/spNNGP/R/mkMatUtil.R | 2 spNNGP-0.1.2/spNNGP/R/nn.R |only spNNGP-0.1.2/spNNGP/R/spConjNNGP.R | 340 +++++++++++++++++++++++----- spNNGP-0.1.2/spNNGP/R/spNNGP.R | 306 ++++++++++++++++++++----- spNNGP-0.1.2/spNNGP/R/spPredict.R | 216 ++++++++++------- spNNGP-0.1.2/spNNGP/R/util.R | 242 +++++++++++++++++++ spNNGP-0.1.2/spNNGP/data/BCEF.rda |only spNNGP-0.1.2/spNNGP/data/BCEF_PTC.rda |only spNNGP-0.1.2/spNNGP/data/datalist | 3 spNNGP-0.1.2/spNNGP/man/BCEF.rda.Rd |only spNNGP-0.1.2/spNNGP/man/BCEF_PTC.rda.Rd |only spNNGP-0.1.2/spNNGP/man/PGLogit.Rd |only spNNGP-0.1.2/spNNGP/man/print.spDiag.Rd |only spNNGP-0.1.2/spNNGP/man/spConjNNGP.Rd | 156 +++++++----- spNNGP-0.1.2/spNNGP/man/spDiag.Rd |only spNNGP-0.1.2/spNNGP/man/spNNGP.Rd | 214 ++++++++++++----- spNNGP-0.1.2/spNNGP/man/spPredict.Rd | 78 +++--- spNNGP-0.1.2/spNNGP/man/summary.NNGP.Rd |only spNNGP-0.1.2/spNNGP/man/summary.PGLogit.Rd |only spNNGP-0.1.2/spNNGP/src/PGLogit.cpp |only spNNGP-0.1.2/spNNGP/src/cNNGP.cpp | 240 +++++++------------ spNNGP-0.1.2/spNNGP/src/cSLGP.cpp |only spNNGP-0.1.2/spNNGP/src/init.cpp | 14 - spNNGP-0.1.2/spNNGP/src/nn.cpp |only spNNGP-0.1.2/spNNGP/src/nn.h |only spNNGP-0.1.2/spNNGP/src/rNNGP.cpp | 150 ++++++------ spNNGP-0.1.2/spNNGP/src/rNNGPReplicated.cpp |only spNNGP-0.1.2/spNNGP/src/rpg.cpp |only spNNGP-0.1.2/spNNGP/src/rpg.h |only spNNGP-0.1.2/spNNGP/src/sNNGP.cpp | 99 ++------ spNNGP-0.1.2/spNNGP/src/sNNGPLogit.cpp |only spNNGP-0.1.2/spNNGP/src/sNNGPPredict.cpp | 72 ++++- spNNGP-0.1.2/spNNGP/src/spNNGP.h | 26 +- spNNGP-0.1.2/spNNGP/src/util.cpp | 188 +-------------- spNNGP-0.1.2/spNNGP/src/util.h | 44 --- 42 files changed, 1563 insertions(+), 922 deletions(-)
Title: 'RStudio' Addin for Network Analysis and Visualization
Description: 'RStudio' addin which provides a GUI to visualize and analyse networks.
After finishing a session, the code to produce the plot is inserted in the current script.
Alternatively, the function SNAhelperGadget() can be used directly from the console.
Additional addins include the Netreader() for reading network files and Netbuilder() to create
small networks via point and click.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between snahelper versions 0.3.0 dated 2019-07-03 and 1.0.0 dated 2019-09-03
DESCRIPTION | 12 - MD5 | 22 +- NAMESPACE | 8 + NEWS.md | 9 + R/Netbuilder.R |only R/Netreader.R |only R/SNAhelper.R | 362 ++++++++++++++++++++++++++++++------------------ R/constants.R | 21 ++ R/helper.R | 25 +-- README.md | 134 +++++++++++------ inst/rstudio/addins.dcf | 12 + man/Netbuilder.Rd |only man/Netreader.Rd |only man/SNAhelper.Rd | 2 14 files changed, 394 insertions(+), 213 deletions(-)
Title: GEO RNA-Seq Experiments Processing Pipeline
Description: An R based pipeline to download and process Gene Expression Omnibus (GEO) RNA-seq data.
For a given GEO series accession ID, this pipeline generates metadata,
both gene and transcript level counts, and quality control (QC) report.
This package is mainly developed to process the GEO RNA-seq datasets
for the web platform GREIN. More details about GREP2 and GREIN can be
found here <doi:10.1101/326223>.
Author: Naim Al Mahi [cre, aut],
Mario Medvedovic [aut, ctb]
Maintainer: Naim Al Mahi <mahina@mail.uc.edu>
Diff between GREP2 versions 1.0.1 dated 2018-07-25 and 1.0.2 dated 2019-09-03
DESCRIPTION | 9 ++-- MD5 | 12 ++--- R/get_metadata.R | 12 ++++- R/process_geo_rnaseq.R | 5 +- inst/doc/vignette.html | 93 ++++++++++++++++++++++++++++++++++++++++++++-- man/process_geo_rnaseq.Rd | 6 +- man/run_salmon.Rd | 5 +- 7 files changed, 118 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-29 1.0.8
Title: The W-Test for Genetic Interactions Testing
Description: Perform the calculation of W-test, diagnostic checking, calculate
minor allele frequency (MAF) and odds ratio.
Author: Rui Sun, Maggie Haitian Wang
Maintainer: Rui Sun <rsunzju@gmail.com>
Diff between wtest versions 3.1 dated 2018-07-04 and 3.2 dated 2019-09-03
wtest-3.1/wtest/data/CpG.pos.txt |only wtest-3.1/wtest/data/SNP.pos.txt |only wtest-3.1/wtest/data/diabetes.geno.txt |only wtest-3.1/wtest/data/genotype.txt |only wtest-3.1/wtest/data/methylation.txt |only wtest-3.2/wtest/DESCRIPTION | 9 ++++--- wtest-3.2/wtest/MD5 | 36 +++++++++++++++--------------- wtest-3.2/wtest/R/hf.snps.meth.R | 6 ++++- wtest-3.2/wtest/R/odds.ratio.R | 4 +++ wtest-3.2/wtest/R/w.qqplot.R | 6 ++++- wtest-3.2/wtest/R/wtest.R | 9 +++++-- wtest-3.2/wtest/R/wtest.high.R | 9 +++++-- wtest-3.2/wtest/R/wtest.snps.meth.R | 31 ++++++++++++++++--------- wtest-3.2/wtest/data/CpG.pos.txt.gz |only wtest-3.2/wtest/data/SNP.pos.txt.gz |only wtest-3.2/wtest/data/diabetes.geno.txt.gz |only wtest-3.2/wtest/data/genotype.txt.gz |only wtest-3.2/wtest/data/methylation.txt.gz |only wtest-3.2/wtest/man/hf.snps.meth.Rd | 2 - wtest-3.2/wtest/man/w.diagnosis.Rd | 5 ++-- wtest-3.2/wtest/man/w.qqplot.Rd | 2 - wtest-3.2/wtest/man/wtest.Rd | 2 - wtest-3.2/wtest/man/wtest.high.Rd | 7 +++-- wtest-3.2/wtest/man/wtest.snps.meth.Rd | 7 ++++- 24 files changed, 86 insertions(+), 49 deletions(-)
More information about metamicrobiomeR at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-29 1.5
2015-01-25 1.4
2013-12-29 1.3
2013-05-09 1.2
2013-01-11 1.1
2012-11-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-12 0.6.3
2015-06-26 0.6.2
2015-05-22 0.6.1
2015-05-21 0.6.0
2014-07-08 0.5.5
2013-01-23 0.5.4
2012-04-27 0.5.3
2011-12-22 0.5.2
2011-08-05 0.5.1
Title: Framework for the Visualization of Distributional Regression
Models
Description: Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'betareg' R package. The core of the package consists of a 'shiny' application, where the model results can be interactively explored and visualized.
Author: Stanislaus Stadlmann [cre, aut]
(<https://orcid.org/0000-0001-6542-6342>)
Maintainer: Stanislaus Stadlmann <stadlmann@uni-goettingen.de>
Diff between distreg.vis versions 1.5.0 dated 2019-06-20 and 1.7.0 dated 2019-09-03
distreg.vis-1.5.0/distreg.vis/man/palette_getter.Rd |only distreg.vis-1.7.0/distreg.vis/DESCRIPTION | 13 distreg.vis-1.7.0/distreg.vis/MD5 | 65 +-- distreg.vis-1.7.0/distreg.vis/NAMESPACE | 10 distreg.vis-1.7.0/distreg.vis/R/datasets.R | 32 + distreg.vis-1.7.0/distreg.vis/R/dist_df_related.R | 24 + distreg.vis-1.7.0/distreg.vis/R/distreg.vis.R | 14 distreg.vis-1.7.0/distreg.vis/R/misc.R | 78 +++- distreg.vis-1.7.0/distreg.vis/R/model_fam_data.R | 8 distreg.vis-1.7.0/distreg.vis/R/moments.R | 112 +++++- distreg.vis-1.7.0/distreg.vis/R/object_specific.R | 56 ++- distreg.vis-1.7.0/distreg.vis/R/plot_dist.R | 110 ++++-- distreg.vis-1.7.0/distreg.vis/R/plot_moments.R | 183 ++++++---- distreg.vis-1.7.0/distreg.vis/R/plot_related_helper.R | 30 - distreg.vis-1.7.0/distreg.vis/R/preds.R | 60 ++- distreg.vis-1.7.0/distreg.vis/R/quantile_limits.R | 26 - distreg.vis-1.7.0/distreg.vis/R/set_mean.R |only distreg.vis-1.7.0/distreg.vis/R/vis.R | 2 distreg.vis-1.7.0/distreg.vis/data/dists.rda |binary distreg.vis-1.7.0/distreg.vis/inst/extdata/dist_df.csv | 3 distreg.vis-1.7.0/distreg.vis/inst/rstudio/addins.dcf | 2 distreg.vis-1.7.0/distreg.vis/man/distreg.vis.Rd | 11 distreg.vis-1.7.0/distreg.vis/man/distreg_checker.Rd | 20 - distreg.vis-1.7.0/distreg.vis/man/dists.Rd | 35 + distreg.vis-1.7.0/distreg.vis/man/fam_fun_getter.Rd | 2 distreg.vis-1.7.0/distreg.vis/man/fam_obtainer.Rd | 2 distreg.vis-1.7.0/distreg.vis/man/is.betareg.Rd |only distreg.vis-1.7.0/distreg.vis/man/is.distreg.fam.Rd |only distreg.vis-1.7.0/distreg.vis/man/model_data.Rd | 28 + distreg.vis-1.7.0/distreg.vis/man/model_fam_data.Rd | 4 distreg.vis-1.7.0/distreg.vis/man/moments.Rd | 70 +++ distreg.vis-1.7.0/distreg.vis/man/plot_dist.Rd | 88 +++- distreg.vis-1.7.0/distreg.vis/man/plot_moments.Rd | 77 +++- distreg.vis-1.7.0/distreg.vis/man/preds.Rd | 37 +- distreg.vis-1.7.0/distreg.vis/man/set_mean.Rd |only distreg.vis-1.7.0/distreg.vis/tests/testthat/test_01_all_dists.R | 40 +- 36 files changed, 953 insertions(+), 289 deletions(-)
Title: ODBC Database Access
Description: An ODBC database interface.
Author: Brian Ripley [aut, cre],
Michael Lapsley [aut] (1999 to Oct 2002)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between RODBC versions 1.3-15 dated 2017-04-13 and 1.3-16 dated 2019-09-03
ChangeLog | 22 ++++++++++++++ DESCRIPTION | 10 +++--- MD5 | 42 +++++++++++++-------------- R/sql.R | 8 ++--- build/vignette.rds |binary configure | 1 configure.ac | 1 inst/doc/RODBC.Rnw | 8 ++--- inst/doc/RODBC.pdf |binary inst/po/da/LC_MESSAGES/RODBC.mo |binary inst/po/de/LC_MESSAGES/RODBC.mo |binary inst/po/en@quot/LC_MESSAGES/R-RODBC.mo |binary inst/po/en@quot/LC_MESSAGES/RODBC.mo |binary inst/po/pl/LC_MESSAGES/RODBC.mo |binary inst/tests.R | 14 ++++----- po/R-RODBC.pot | 4 +- po/RODBC.pot | 50 ++++++++++++++++----------------- po/da.po | 46 +++++++++++++++--------------- po/de.po | 46 +++++++++++++++--------------- po/pl.po | 46 +++++++++++++++--------------- src/config.h.in | 5 ++- vignettes/RODBC.Rnw | 8 ++--- 22 files changed, 167 insertions(+), 144 deletions(-)
Title: Utilities for Importing Data from Plain Text Accounting Files
Description: Utilities for querying plain text accounting files from 'Ledger', 'HLedger', and 'Beancount'.
Author: Trevor L Davis [aut, cre],
Jenya Sovetkin [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between ledger versions 2.0.1 dated 2019-03-22 and 2.0.2 dated 2019-09-03
DESCRIPTION | 6 MD5 | 6 README.md | 632 ++++++++++++++++++++++++++++-------------------------------- man/figures |only 4 files changed, 312 insertions(+), 332 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-17 1.7.1
2016-02-17 1.7.0
2016-01-26 1.6.0
2015-09-21 1.5.0
2015-09-03 1.4.0
2015-07-12 1.3.2
2015-06-29 1.2.3
2015-05-05 1.0.0
2015-05-01 0.9.6
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Author: Jakob Messner [aut, cre] (<https://orcid.org/0000-0002-1027-3673>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>)
Maintainer: Jakob Messner <jakob.messner@posteo.net>
Diff between crch versions 1.0-3 dated 2019-05-08 and 1.0-4 dated 2019-09-03
DESCRIPTION | 11 +++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + NEWS | 5 +++++ build/partial.rdb |binary inst/doc/crch.pdf |binary man/crch.Rd | 2 +- man/crch.boost.Rd | 8 ++++---- src/mycov.c | 2 +- src/tlogis.c | 16 ++++++++-------- src/tnorm.c | 16 ++++++++-------- src/tt.c | 16 ++++++++-------- tests/Examples/crch-Ex.Rout.save | 17 +++++++++++------ 13 files changed, 64 insertions(+), 54 deletions(-)
Title: Brace Expansions
Description: Performs brace expansions on strings. Made popular by Unix shells, brace expansion allows users to concisely generate certain character vectors by taking a single string and (recursively) expanding the comma-separated lists and double-period-separated integer and character sequences enclosed within braces in that string. The double-period-separated numeric integer expansion also supports padding the resulting numbers with zeros.
Author: Trevor Davis [aut, cre]
Maintainer: Trevor Davis <trevor.l.davis@gmail.com>
Diff between bracer versions 1.0.1 dated 2019-08-08 and 1.1.1 dated 2019-09-03
DESCRIPTION | 10 ++++--- MD5 | 17 +++++++------ NAMESPACE | 2 + NEWS.md | 9 ++++++ R/expand.R | 20 ++++++++++++--- R/glob.R |only README.md | 56 +++++++++++++++++++++++++++++++++++++++---- man/expand_braces.Rd | 12 +++++++-- man/glob.Rd |only tests/testthat/test_expand.R | 5 +++ tests/testthat/test_glob.R |only 11 files changed, 109 insertions(+), 22 deletions(-)