Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>),
Carsten Schwemmer [ctb],
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.7.0 dated 2019-08-02 and 2.7.1 dated 2019-09-07
DESCRIPTION | 14 +++++----- MD5 | 50 ++++++++++++++++++------------------ NAMESPACE | 2 + NEWS.md | 17 ++++++++++++ R/html_print.R | 11 +++++++ R/plot_model.R | 2 - R/sjTabStackFrq.R | 39 ++++++++++++++++------------ R/sjplot.R | 15 +++------- R/sjplot_themes.R | 4 ++ R/tidiers.R | 34 ++++++++++++++++++++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/blackwhitefigures.html | 6 ++-- inst/doc/custplot.html | 6 ++-- inst/doc/plot_interactions.html | 4 +- inst/doc/plot_likert_scales.html | 16 +++++------ inst/doc/plot_marginal_effects.html | 4 +- inst/doc/plot_model_estimates.html | 6 ++-- inst/doc/sjtitemanalysis.html | 4 +- inst/doc/tab_bayes.html | 28 ++++++++++---------- inst/doc/tab_mixed.html | 4 +- inst/doc/tab_model_estimates.html | 4 +- inst/doc/table_css.html | 4 +- man/plot_model.Rd | 2 - man/tab_df.Rd | 8 ++++- man/tab_stackfrq.Rd | 3 +- 26 files changed, 176 insertions(+), 111 deletions(-)
Title: Tools for Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter, ``Practical Tools for Designing and Weighting Survey Samples'' (2nd edition, 2018). Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.1 dated 2018-10-21 and 1.2 dated 2019-09-07
DESCRIPTION | 13 +++++++------ MD5 | 26 +++++++++++++------------- R/nContMoe.R | 6 +++--- data/Domainy1y2.RData |binary data/MDarea.pop.RData |binary data/ThirdGrade.RData |binary data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |binary data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary 14 files changed, 23 insertions(+), 22 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers. See <arXiv:1711.08013> for details.
Author: Bartolomeo Stellato [cre, aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb]
Maintainer: Bartolomeo Stellato <bartolomeo.stellato@gmail.com>
Diff between osqp versions 0.6.0 dated 2019-09-04 and 0.6.0.1 dated 2019-09-07
DESCRIPTION | 20 ++++-- MD5 | 34 +++++------ NEWS.md | 4 + configure | 11 +++ src/osqp_sources/README.md | 2 src/osqp_sources/ci/travis/script.sh | 12 ++++ src/osqp_sources/docs/_static/css/osqp_theme.css | 3 - src/osqp_sources/docs/citing/index.rst | 23 ++++--- src/osqp_sources/docs/examples/setup-and-solve.rst | 26 ++++++++ src/osqp_sources/docs/examples/update-matrices.rst | 36 ++++++++++++ src/osqp_sources/docs/examples/update-vectors.rst | 34 +++++++++++ src/osqp_sources/docs/get_started/linear_system_solvers.rst | 4 - src/osqp_sources/docs/index.rst | 8 +- src/osqp_sources/docs/parsers/jump.rst | 4 - src/osqp_sources/docs/parsers/yalmip.rst | 2 src/osqp_sources/docs/solver/index.rst | 3 - src/osqp_sources/include/glob_opts.h | 34 +++-------- src/osqp_sources/include/types.h | 4 + 18 files changed, 190 insertions(+), 74 deletions(-)
Title: Simultaneous Confidence Intervals for Multinomial Proportions
According to the Method by Sison and Glaz
Description: An implementation of a method for building simultaneous confidence intervals for the probabilities of a multinomial distribution given a set of observations, proposed by Sison and Glaz in their paper:
Sison, C.P and J. Glaz. Simultaneous confidence intervals and sample size determination for multinomial proportions. Journal of the American Statistical Association, 90:366-369 (1995).
The method is an R translation of the SAS code implemented by May and Johnson in their paper:
May, W.L. and W.D. Johnson. Constructing two-sided simultaneous confidence intervals for multinomial proportions for small counts in a large number of cells. Journal of Statistical Software 5(6) (2000).
Paper and code available at <DOI:10.18637/jss.v005.i06>.
Author: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Maintainer: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Diff between MultinomialCI versions 1.0 dated 2012-12-07 and 1.1 dated 2019-09-07
DESCRIPTION | 31 +++++---------- MD5 | 10 ++-- NAMESPACE | 3 - R/aux-fn.R | 89 ++++++++++++++++++++------------------------ R/sison.R | 103 +++++++++++++++++++++++++-------------------------- man/multinomialCI.Rd | 5 -- 6 files changed, 114 insertions(+), 127 deletions(-)
Title: Multivariate Nonparametric Methods
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods. Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and some algorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics.
Author: John E. Kolassa [cre],
Stephane Jankowski [aut]
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between MultNonParam versions 1.2.6 dated 2018-06-08 and 1.2.8 dated 2019-09-07
MultNonParam-1.2.6/MultNonParam/data/prostate.RData |only MultNonParam-1.2.6/MultNonParam/data/sotiriou.RData |only MultNonParam-1.2.8/MultNonParam/DESCRIPTION | 12 +- MultNonParam-1.2.8/MultNonParam/MD5 | 50 ++++++++--- MultNonParam-1.2.8/MultNonParam/NAMESPACE | 18 +++ MultNonParam-1.2.8/MultNonParam/R/aov.P.R | 4 MultNonParam-1.2.8/MultNonParam/R/betatest.R | 6 - MultNonParam-1.2.8/MultNonParam/R/dumpdata.R |only MultNonParam-1.2.8/MultNonParam/R/eactquantileci.R |only MultNonParam-1.2.8/MultNonParam/R/exactquantileci.R |only MultNonParam-1.2.8/MultNonParam/R/kweffectsize.R |only MultNonParam-1.2.8/MultNonParam/R/kwpower.R |only MultNonParam-1.2.8/MultNonParam/R/kwsamplesize.R |only MultNonParam-1.2.8/MultNonParam/R/mannwhitney.test.R |only MultNonParam-1.2.8/MultNonParam/R/pairwiseprobabilities.R |only MultNonParam-1.2.8/MultNonParam/R/powerplot.R |only MultNonParam-1.2.8/MultNonParam/R/probest.R | 4 MultNonParam-1.2.8/MultNonParam/R/prostate.R | 1 MultNonParam-1.2.8/MultNonParam/R/solvencp.R |only MultNonParam-1.2.8/MultNonParam/R/sotiriou.R | 5 - MultNonParam-1.2.8/MultNonParam/R/symscorestat.R | 3 MultNonParam-1.2.8/MultNonParam/R/terpstra.test.R |only MultNonParam-1.2.8/MultNonParam/R/terpstrapower.R |only MultNonParam-1.2.8/MultNonParam/R/zzz.r |only MultNonParam-1.2.8/MultNonParam/data/prostate.rda |only MultNonParam-1.2.8/MultNonParam/data/sotiriou.rda |only MultNonParam-1.2.8/MultNonParam/man/exactquantileci.Rd |only MultNonParam-1.2.8/MultNonParam/man/kweffectsize.Rd |only MultNonParam-1.2.8/MultNonParam/man/kwpower.Rd |only MultNonParam-1.2.8/MultNonParam/man/kwsamplesize.Rd |only MultNonParam-1.2.8/MultNonParam/man/mannwhitney.test.Rd |only MultNonParam-1.2.8/MultNonParam/man/pairwiseprobabilities.Rd |only MultNonParam-1.2.8/MultNonParam/man/powerplot.Rd |only MultNonParam-1.2.8/MultNonParam/man/probabilityderiv.Rd |only MultNonParam-1.2.8/MultNonParam/man/prostate.Rd | 3 MultNonParam-1.2.8/MultNonParam/man/solvencp.Rd |only MultNonParam-1.2.8/MultNonParam/man/sotiriou.Rd | 4 MultNonParam-1.2.8/MultNonParam/man/terpstra.test.Rd |only MultNonParam-1.2.8/MultNonParam/man/terpstrapower.Rd |only MultNonParam-1.2.8/MultNonParam/src/init.c | 3 40 files changed, 76 insertions(+), 37 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 1.4 dated 2016-05-23 and 1.5 dated 2019-09-07
MFAg-1.4/MFAg/R/GSVD.R |only MFAg-1.4/MFAg/R/IM.R |only MFAg-1.4/MFAg/R/MFA.R |only MFAg-1.4/MFAg/R/NormData.R |only MFAg-1.4/MFAg/R/Plot.MFA.R |only MFAg-1.4/MFAg/man/DataMix.Rd |only MFAg-1.4/MFAg/man/DataQuali.Rd |only MFAg-1.4/MFAg/man/DataQuan.Rd |only MFAg-1.4/MFAg/man/GSVD.Rd |only MFAg-1.4/MFAg/man/IM.Rd |only MFAg-1.4/MFAg/man/MFA.Rd |only MFAg-1.4/MFAg/man/NormData.Rd |only MFAg-1.4/MFAg/man/Plot.MFA.Rd |only MFAg-1.5/MFAg/DESCRIPTION | 8 +++--- MFAg-1.5/MFAg/MD5 | 40 +++++++++++++++++---------------- MFAg-1.5/MFAg/NAMESPACE | 8 ++++-- MFAg-1.5/MFAg/R/GSVD_English.R |only MFAg-1.5/MFAg/R/IM_English.R |only MFAg-1.5/MFAg/R/LocLab_English.R |only MFAg-1.5/MFAg/R/MFA_English.R |only MFAg-1.5/MFAg/R/NormData_English.R |only MFAg-1.5/MFAg/R/Plot.MFA_English.R |only MFAg-1.5/MFAg/data/DataMix.rda |binary MFAg-1.5/MFAg/data/DataQuali.rda |binary MFAg-1.5/MFAg/data/DataQuan.rda |binary MFAg-1.5/MFAg/man/DataMix_English.Rd |only MFAg-1.5/MFAg/man/DataQuali_English.Rd |only MFAg-1.5/MFAg/man/DataQuan_English.Rd |only MFAg-1.5/MFAg/man/GSVD_English.Rd |only MFAg-1.5/MFAg/man/IM_English.Rd |only MFAg-1.5/MFAg/man/LocLab_English.Rd |only MFAg-1.5/MFAg/man/MFA_English.Rd |only MFAg-1.5/MFAg/man/MFAg-package.Rd | 4 +-- MFAg-1.5/MFAg/man/NormData_English.Rd |only MFAg-1.5/MFAg/man/Plot.MFA_English.Rd |only 35 files changed, 32 insertions(+), 28 deletions(-)
Title: R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd' URL Shortening
Services
Description: Allows using two URL shortening services, which also provide
expanding and analytic functions. Specifically developed for 'Bit.ly' (which requires OAuth2) and 'is.gd' (no API key).
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Diff between urlshorteneR versions 1.1.1 dated 2019-06-15 and 1.1.2 dated 2019-09-07
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/ApiKey.R | 1 - README.md | 2 -- build/vignette.rds |binary inst/doc/Tutorial.html | 10 +++++++--- 6 files changed, 18 insertions(+), 17 deletions(-)
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Seqinr includes
utilities for sequence data management under the ACNUC system
described in Gouy, M. et al. (1984) Nucleic Acids Res.
12:121-127 <doi:10.1093/nar/12.1Part1.121>.
Author: Delphine Charif [aut],
Olivier Clerc [ctb],
Carolin Frank [ctb],
Jean R. Lobry [aut, cph],
Anamaria Necşulea [ctb],
Leonor Palmeira [ctb],
Simon Penel [cre],
Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel@univ-lyon1.fr>
Diff between seqinr versions 3.4-5 dated 2017-08-01 and 3.6-1 dated 2019-09-07
DESCRIPTION | 21 +++- MD5 | 95 ++++++++++----------- R/read.alignment.R | 8 - R/read.fasta.R | 15 ++- data/AnoukResult.RData |binary data/ECH.RData |binary data/EXP.RData |binary data/JLO.RData |binary data/SEQINR.UTIL.RData |binary data/aacost.RData |binary data/aaindex.RData |binary data/caitab.RData |binary data/chargaff.RData |binary data/clustal.RData |binary data/datalist | 2 data/dinucl.RData |binary data/ec999.RData |binary data/fasta.RData |binary data/gcO2.rda |binary data/gcT.rda |binary data/gs500liz.RData |binary data/identifiler.RData |binary data/kaksTorture.RData |binary data/m16j.RData |binary data/mase.RData |binary data/msf.RData |binary data/pK.RData |binary data/phylip.RData |binary data/prochlo.RData |binary data/revaligntest.RData |binary data/sysdata.rda |binary data/toyaa.RData |binary data/toycodon.RData |binary data/waterabs.RData |binary inst/sequences/LTPs128_SSU_aligned_First_Two.fasta |only man/clustal.Rd | 2 man/ec999.Rd | 4 man/fasta.Rd | 2 man/gb2fasta.Rd | 5 - man/mase.Rd | 2 man/msf.Rd | 2 man/phylip.Rd | 2 man/read.alignment.Rd | 19 +++- man/read.fasta.Rd | 4 man/reverse.align.Rd | 11 +- man/write.fasta.Rd | 6 - src/alignment.c | 5 - src/kaks.c | 24 ++--- src/packagename_init.c | 2 49 files changed, 143 insertions(+), 88 deletions(-)
Title: A simple interface to the PROJ.4 cartographic projections
library
Description: A simple interface to lat/long projection and datum
transformation of the PROJ.4 cartographic projections library.
It allows transformation of geographic coordinates from one
projection and/or datum to another.
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between proj4 versions 1.0-8 dated 2012-08-05 and 1.0-8.1 dated 2019-09-07
DESCRIPTION | 7 MD5 | 6 configure | 543 ++++++++++++++++++++++++++++++++--------------------------- configure.ac | 2 4 files changed, 306 insertions(+), 252 deletions(-)
Title: Geometric Shadow Calculations
Description: Functions for calculating: (1) shadow height, (2) logical shadow flag, (3) shadow footprint, (4) Sky View Factor and (5) radiation load. Basic required inputs include a polygonal layer of obstacle outlines along with their heights (i.e. "extruded polygons"), sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, determining azimuth of line segments, shifting segments by azimuth and distance, constructing the footprint of a line-of-sight between an observer and the sun, and creating a 3D grid covering the surface area of extruded polygons.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.6.1 dated 2019-06-03 and 0.6.2 dated 2019-09-07
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 12 ++++++------ NEWS.md | 7 +++++-- R/surfaceGrid.R | 38 +++++++++++++++++++++++++++++--------- build/vignette.rds |binary man/surfaceGrid.Rd | 6 +++++- 7 files changed, 50 insertions(+), 23 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 8.400 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.1.16.0.1 dated 2019-08-29 and 0.2.10.0.1 dated 2019-09-07
RcppEnsmallen-0.1.16.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_decomposable_evaluate_const.hpp |only RcppEnsmallen-0.1.16.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_decomposable_evaluate_with_gradient_const.hpp |only RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/ChangeLog | 9 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/DESCRIPTION | 10 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/MD5 | 406 +++---- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/NEWS.md | 14 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen.hpp | 11 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_delta/ada_delta.hpp | 33 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_delta/ada_delta_update.hpp | 114 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_grad/ada_grad.hpp | 33 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_grad/ada_grad_update.hpp | 88 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/adam.hpp | 34 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/adam_update.hpp | 130 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/adamax_update.hpp | 117 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/amsgrad_update.hpp | 134 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/nadam_update.hpp | 166 +-- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/nadamax_update.hpp | 155 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/optimisticadam_update.hpp | 134 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian.hpp | 84 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian_function.hpp | 9 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian_function_impl.hpp | 25 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian_impl.hpp | 116 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/bigbatch_sgd/adaptive_stepsize.hpp | 301 +++-- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/bigbatch_sgd/backtracking_line_search.hpp | 105 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/bigbatch_sgd/bigbatch_sgd.hpp | 34 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/bigbatch_sgd/bigbatch_sgd_impl.hpp | 156 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/callbacks |only RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cmaes/cmaes.hpp | 11 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cmaes/cmaes_impl.hpp | 163 +-- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cmaes/full_selection.hpp | 13 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cmaes/random_selection.hpp | 13 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cne/cne.hpp | 40 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cne/cne_impl.hpp | 106 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/config.hpp | 19 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/de/de.hpp | 17 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/de/de_impl.hpp | 89 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ens_version.hpp | 6 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/eve/eve.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/eve/eve_impl.hpp | 141 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ftml/ftml.hpp | 31 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ftml/ftml_update.hpp | 137 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function.hpp | 81 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_decomposable_evaluate.hpp | 137 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_decomposable_evaluate_with_gradient.hpp | 183 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_decomposable_gradient.hpp | 104 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_evaluate.hpp | 124 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_evaluate_with_gradient.hpp | 161 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/add_gradient.hpp | 111 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/arma_traits.hpp |only RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/sfinae_utility.hpp | 64 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/static_checks.hpp | 242 +++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/function/traits.hpp | 457 ++++---- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/atoms.hpp | 7 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/constr_lpball.hpp | 32 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/constr_structure_group.hpp | 35 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/frank_wolfe.hpp | 27 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/frank_wolfe_impl.hpp | 53 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/line_search/line_search.hpp | 18 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/line_search/line_search_impl.hpp | 53 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/proximal/proximal.hpp | 6 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/proximal/proximal_impl.hpp | 16 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/update_classic.hpp | 20 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/update_full_correction.hpp | 33 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/update_linesearch.hpp | 12 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/update_span.hpp | 18 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/gradient_descent/gradient_descent.hpp | 65 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/gradient_descent/gradient_descent_impl.hpp | 64 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/grid_search/grid_search.hpp | 16 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/grid_search/grid_search_impl.hpp | 34 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/iqn/iqn.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/iqn/iqn_impl.hpp | 135 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/katyusha/katyusha.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/katyusha/katyusha_impl.hpp | 86 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/lbfgs/lbfgs.hpp | 88 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/lbfgs/lbfgs_impl.hpp | 160 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/padam/padam.hpp | 30 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/padam/padam_update.hpp | 134 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/parallel_sgd/decay_policies/constant_step.hpp | 3 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/parallel_sgd/parallel_sgd.hpp | 29 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/parallel_sgd/parallel_sgd_impl.hpp | 96 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/ackley_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/ackley_function_impl.hpp | 45 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/aug_lagrangian_test_functions.hpp | 26 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/aug_lagrangian_test_functions_impl.hpp | 22 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/beale_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/beale_function_impl.hpp | 44 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/booth_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/booth_function_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/bukin_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/bukin_function_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/colville_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/colville_function_impl.hpp | 46 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/cross_in_tray_function.hpp | 13 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/cross_in_tray_function_impl.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/drop_wave_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/drop_wave_function_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/easom_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/easom_function_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/eggholder_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/eggholder_function_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/fw_test_function.hpp | 7 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/generalized_rosenbrock_function.hpp | 36 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/generalized_rosenbrock_function_impl.hpp | 44 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/goldstein_price_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/goldstein_price_function_impl.hpp | 47 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/gradient_descent_test_function.hpp | 9 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/gradient_descent_test_function_impl.hpp | 11 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/himmelblau_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/himmelblau_function_impl.hpp | 44 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/holder_table_function.hpp | 22 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/holder_table_function_impl.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/levy_function_n13.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/levy_function_n13_impl.hpp | 38 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/logistic_regression_function.hpp | 64 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/logistic_regression_function_impl.hpp | 162 +-- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/matyas_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/matyas_function_impl.hpp | 36 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/mc_cormick_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/mc_cormick_function_impl.hpp | 34 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rastrigin_function.hpp | 24 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rastrigin_function_impl.hpp | 27 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rosenbrock_function.hpp | 34 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rosenbrock_function_impl.hpp | 57 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rosenbrock_wood_function.hpp | 24 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/rosenbrock_wood_function_impl.hpp | 36 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schaffer_function_n2.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schaffer_function_n2_impl.hpp | 58 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schaffer_function_n4.hpp | 13 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schaffer_function_n4_impl.hpp | 24 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schwefel_function.hpp | 24 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/schwefel_function_impl.hpp | 24 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sgd_test_function.hpp | 15 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sgd_test_function_impl.hpp | 19 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sparse_test_function.hpp | 25 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sparse_test_function_impl.hpp | 23 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sphere_function.hpp | 25 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/sphere_function_impl.hpp | 29 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/styblinski_tang_function.hpp | 25 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/styblinski_tang_function_impl.hpp | 29 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/three_hump_camel_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/three_hump_camel_function_impl.hpp | 36 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/wood_function.hpp | 21 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/problems/wood_function_impl.hpp | 59 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/pso/init_policies/default_init.hpp | 55 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/pso/pso.hpp | 112 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/pso/pso_impl.hpp | 108 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/pso/update_policies/lbest_update.hpp | 234 ++-- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/qhadam/qhadam.hpp | 31 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/qhadam/qhadam_update.hpp | 133 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/rmsprop/rmsprop.hpp | 31 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/rmsprop/rmsprop_update.hpp | 82 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sa/exponential_schedule.hpp | 3 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sa/sa.hpp | 25 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sa/sa_impl.hpp | 77 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sarah/sarah.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sarah/sarah_impl.hpp | 80 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sarah/sarah_plus_update.hpp | 9 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sarah/sarah_update.hpp | 9 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/descent_policies/cyclic_descent.hpp | 4 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/descent_policies/greedy_descent.hpp | 12 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/descent_policies/random_descent.hpp | 6 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/scd.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/scd_impl.hpp | 57 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lin_alg.hpp | 52 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lrsdp.hpp | 7 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lrsdp_function.hpp | 105 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lrsdp_function_impl.hpp | 179 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lrsdp_impl.hpp | 16 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/primal_dual.hpp | 187 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/primal_dual_impl.hpp | 519 ++++++---- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/sdp.hpp | 56 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/sdp_impl.hpp | 80 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/decay_policies/no_decay.hpp | 75 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/sgd.hpp | 50 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/sgd_impl.hpp | 142 ++ RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/update_policies/gradient_clipping.hpp | 96 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/update_policies/momentum_update.hpp | 80 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/update_policies/nesterov_momentum_update.hpp | 90 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/update_policies/quasi_hyperbolic_update.hpp | 82 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/update_policies/vanilla_update.hpp | 58 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/cyclical_decay.hpp | 121 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/sgdr.hpp | 28 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/sgdr_impl.hpp | 12 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/snapshot_ensembles.hpp | 147 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/snapshot_sgdr.hpp | 29 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/snapshot_sgdr_impl.hpp | 42 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/smorms3/smorms3.hpp | 33 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/smorms3/smorms3_update.hpp | 116 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spalera_sgd/spalera_sgd.hpp | 37 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spalera_sgd/spalera_sgd_impl.hpp | 167 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spalera_sgd/spalera_stepsize.hpp | 272 ++--- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spsa/spsa.hpp | 22 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spsa/spsa_impl.hpp | 51 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/svrg/barzilai_borwein_decay.hpp | 96 + RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/svrg/svrg.hpp | 36 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/svrg/svrg_impl.hpp | 115 +- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/svrg/svrg_update.hpp | 72 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/swats/swats.hpp | 31 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/swats/swats_update.hpp | 188 ++- RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/utility |only RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/wn_grad/wn_grad.hpp | 31 RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/inst/include/ensmallen_bits/wn_grad/wn_grad_update.hpp | 68 - RcppEnsmallen-0.2.10.0.1/RcppEnsmallen/man/RcppEnsmallen-package.Rd | 2 203 files changed, 8341 insertions(+), 4543 deletions(-)
Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar
energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy
Resource) data are freely available global meteorology and surface solar
energy climatology data for download with a resolution of 1/2 by 1/2 arc
degree longitude and latitude and are funded through the 'NASA' Earth
Science Directorate Applied Science Program. For more on the data
themselves, a web-based data viewer and web access, please see
<https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>),
Hazel Kavili [rev],
Alison Boyer [rev]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 1.1.1 dated 2019-04-18 and 1.1.2 dated 2019-09-07
DESCRIPTION | 9 MD5 | 49 +-- NEWS.md | 21 + R/create_icasa.R | 3 R/create_met.R | 22 - R/get_power.R | 3 R/internal_functions.R | 6 R/nasapower-package.R | 2 R/parameters_data.R | 2 README.md | 13 build/vignette.rds |binary data/parameters.rda |binary inst/CITATION | 6 inst/doc/nasapower.Rmd | 294 +++++++++++++++----- inst/doc/nasapower.html | 436 ++++++++++++++++--------------- man/create_icasa.Rd | 2 man/create_met.Rd | 2 man/get_power.Rd | 2 man/nasapower.Rd | 2 man/parameters.Rd | 2 tests/testthat/test-create_met.R | 8 tests/testthat/test-internal_functions.R | 2 vignettes/create-climatology-brick-1.png |only vignettes/create-single-raster-1.png |only vignettes/nasapower.Rmd | 294 +++++++++++++++----- vignettes/nasapower.Rmd.orig |only vignettes/plot-fig1-1.png |only vignettes/precompile.R |only 28 files changed, 772 insertions(+), 408 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move versions 3.2.0 dated 2019-05-16 and 3.2.2 dated 2019-09-07
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/WebImport.R | 20 ++++++++++++-------- build/vignette.rds |binary inst/doc/browseMovebank.pdf |binary inst/doc/move.pdf |binary man/getMovebankReferenceTable.Rd | 4 +++- man/move-package.Rd | 4 ++-- man/move.Rd | 2 +- man/unUsedRecords.Rd | 2 +- tests/testthat/test.move.R | 4 ++++ tests/testthat/test.subSet.R | 6 +++--- 12 files changed, 42 insertions(+), 32 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Peter Hickey [ctb],
Brian Montgomery [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.54.0 dated 2018-07-23 and 0.55.0 dated 2019-09-07
DESCRIPTION | 15 MD5 | 99 ++--- NEWS | 523 ++++++++++++++++--------------- R/indexByRow.R | 8 R/rowAlls.R | 2 R/rowCumsums.R | 6 R/rowMeans2.R | 4 R/rowRanks.R | 101 ++++- R/rowSums2.R | 4 R/rowTabulates.R | 14 R/weightedMad.R | 7 R/weightedMean.R | 4 R/weightedMedian.R | 4 R/weightedVar.R | 20 - build/vignette.rds |binary inst/WORDLIST |only inst/doc/matrixStats-methods.html | 4 inst/doc/matrixStats-methods.md.rsp | 8 man/rowAlls.Rd | 2 man/rowCumsums.Rd | 6 man/rowMeans2.Rd | 8 man/rowMedians.Rd | 8 man/rowQuantiles.Rd | 8 man/rowRanges.Rd | 18 - man/rowRanks.Rd | 91 +++-- man/rowSds.Rd | 8 man/rowSums2.Rd | 6 man/rowTabulates.Rd | 13 man/rowWeightedMeans.Rd | 8 man/rowWeightedMedians.Rd | 8 man/weightedMad.Rd | 12 man/weightedMean.Rd | 10 man/weightedMedian.Rd | 4 man/weightedVar.Rd | 31 + src/anyMissing.c | 1 src/binMeans_lowlevel_template.h | 4 src/indexByRow.c | 2 src/rowCumsums.c | 4 src/rowDiffs_lowlevel_template.h | 2 src/rowLogSumExp_lowlevel_template.h | 2 src/rowRanksWithTies.c | 144 +++++++- src/rowRanksWithTies_lowlevel.h | 111 ++++++ src/rowRanksWithTies_lowlevel_template.h | 59 ++- src/weightedMean_lowlevel_template.h | 2 tests/indexByRow.R | 9 tests/rowCumsums.R | 18 - tests/rowRanks.R | 112 +++++- tests/rowTabulates.R | 10 tests/weightedVar.R | 10 tests/weightedVar_etal.R | 7 vignettes/matrixStats-methods.md.rsp | 8 51 files changed, 1041 insertions(+), 528 deletions(-)
Title: Local Approximate Gaussian Process Regression
Description: Performs approximate GP regression for large computer experiments and spatial datasets. The approximation is based on finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization are supported for prediction over a vast out-of-sample testing set; GPU acceleration is also supported for an important subroutine. OpenMP and GPU features may require special compilation. An interface to lower-level (full) GP inference and prediction is provided. Wrapper routines for blackbox optimization under mixed equality and inequality constraints via an augmented Lagrangian scheme, and for large scale computer model calibration, are also provided.
Author: Robert B. Gramacy <rbg@vt.edu>, Furong Sun <furongs@vt.edu>
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between laGP versions 1.5-3 dated 2018-12-07 and 1.5-5 dated 2019-09-07
ChangeLog | 33 +++++++++++++++++++++- DESCRIPTION | 8 ++--- MD5 | 60 +++++++++++++++++++++-------------------- NAMESPACE | 4 +- R/gp.R | 6 ++-- R/gp_sep.R | 30 +++++++++++++++++--- R/laGP_sep.R | 6 ++-- build/vignette.rds |binary demo/ALfhat.R | 4 +- demo/GSBP.R | 23 ++++----------- demo/LAH.R | 24 +++++----------- inst/doc/laGP.pdf |binary man/alcGP.Rd | 46 +++++++++++++++++-------------- man/blhs.Rd | 28 ++++++++++--------- man/laGP.Rd | 54 ++++++++++-------------------------- man/optim.auglag.Rd | 4 +- man/randLine.Rd | 31 +++++++++++++-------- src/covar.c | 2 - src/davies.h | 1 src/gp.c | 46 +++++++++++++++++-------------- src/gp.h | 4 +- src/gp_sep.c | 48 +++++++++++++++++--------------- src/gp_sep.h | 18 ++++++------ src/init.c | 8 ++--- src/laGP.c | 1 src/laGP_sep.c | 1 src/laGP_sep.sublime-workspace |only src/linalg.c | 1 src/linalg.h | 1 src/symbols.rds |only src/util.c | 5 ++- src/util.h | 2 - 32 files changed, 273 insertions(+), 226 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.4.1 dated 2019-07-24 and 0.5.0 dated 2019-09-07
DESCRIPTION | 16 MD5 | 294 ++++++----- NAMESPACE | 23 NEWS.md | 46 + R/all_equal_models.R | 12 R/clean_names.R | 36 + R/clean_parameters.R | 44 + R/color_if.R |only R/colour_tools.R | 36 - R/compute_variances.R | 87 ++- R/download_model.R | 4 R/find_algorithm.R | 6 R/find_formula.R | 107 +++- R/find_interactions.R | 12 R/find_parameters.R | 60 ++ R/find_predictors.R | 13 R/find_random.R | 2 R/find_random_slopes.R | 9 R/find_response.R | 2 R/find_statistic.R |only R/find_terms.R | 1 R/find_weights.R | 20 R/format_table.R |only R/format_value.R |only R/get_data.R | 77 ++- R/get_nested_lme_varcorr.R | 7 R/get_parameters.R | 89 +++ R/get_predictors.R | 5 R/get_priors.R | 19 R/get_response.R | 2 R/get_variances.R | 53 +- R/get_weights.R | 60 +- R/has_intercept.R | 5 R/helper_functions.R | 161 ++++-- R/is_model.R | 136 ++++- R/is_model_supported.R |only R/is_multivariate.R | 10 R/is_nullmodel.R | 3 R/link_function.R | 49 + R/link_inverse.R | 36 - R/model_info.R | 45 + R/n_obs.R | 13 R/print_color.R |only R/print_parameters.R | 21 README.md | 262 +++++++--- build/partial.rdb |binary inst/WORDLIST |only inst/doc/insight.Rmd | 4 inst/doc/insight.html | 4 man/all_models_equal.Rd | 1 man/clean_names.Rd | 1 man/clean_parameters.Rd | 3 man/color_if.Rd |only man/dot-colour_detect.Rd |only man/find_algorithm.Rd | 4 man/find_formula.Rd | 2 man/find_interactions.Rd | 1 man/find_parameters.Rd | 4 man/find_statistic.Rd |only man/find_terms.Rd | 1 man/format_table.Rd |only man/format_value.Rd |only man/get_data.Rd | 1 man/get_parameters.Rd | 4 man/get_priors.Rd | 5 man/get_response.Rd | 2 man/get_variance.Rd | 13 man/get_weights.Rd | 1 man/has_intercept.Rd | 3 man/is_model.Rd | 11 man/is_model_supported.Rd |only man/is_nullmodel.Rd | 3 man/model_info.Rd | 4 man/n_obs.Rd | 1 man/print_color.Rd | 3 man/print_parameters.Rd | 5 tests/spelling.R |only tests/testthat/test-BBmm.R | 30 - tests/testthat/test-BBreg.R | 27 - tests/testthat/test-BayesFactorBF.R | 18 tests/testthat/test-GLMMadaptive.R | 239 +++++++-- tests/testthat/test-Gam2.R | 38 + tests/testthat/test-LORgee.R | 68 ++ tests/testthat/test-MCMCglmm.R | 27 - tests/testthat/test-all_models_equal.R | 4 tests/testthat/test-aovlist.R | 50 +- tests/testthat/test-betabin.R | 24 tests/testthat/test-betareg.R | 68 ++ tests/testthat/test-bigglm.R | 59 +- tests/testthat/test-blmer.R | 224 ++++++--- tests/testthat/test-brms.R | 621 +++++++++++++++++++----- tests/testthat/test-censReg.R | 121 ++++ tests/testthat/test-clm.R | 41 + tests/testthat/test-clm2.R | 57 +- tests/testthat/test-clmm.R | 107 +++- tests/testthat/test-coxme.R | 94 +++ tests/testthat/test-coxph.R | 42 + tests/testthat/test-crch.R | 48 + tests/testthat/test-data.frame.R | 4 tests/testthat/test-feis.R | 106 +++- tests/testthat/test-felm.R | 79 ++- tests/testthat/test-find_predictor_nested_re.R |only tests/testthat/test-gam.R | 102 +++- tests/testthat/test-gamlss.R | 38 + tests/testthat/test-gamm.R | 2 tests/testthat/test-gamm4.R | 56 +- tests/testthat/test-gbm.R | 54 +- tests/testthat/test-gee.R | 43 + tests/testthat/test-geeglm.R | 52 +- tests/testthat/test-glm.R | 42 + tests/testthat/test-glmRob.R | 32 - tests/testthat/test-glmmTMB.R | 622 ++++++++++++++++++++----- tests/testthat/test-glmrob_base.R | 48 + tests/testthat/test-gls.R | 68 ++ tests/testthat/test-gmnl.R | 43 + tests/testthat/test-has_intercept.R | 8 tests/testthat/test-hurdle.R | 66 ++ tests/testthat/test-is_nullmodel.R | 3 tests/testthat/test-iv_robust.R | 61 +- tests/testthat/test-ivreg.R | 64 ++ tests/testthat/test-lm.R | 137 ++++- tests/testthat/test-lmRob.R | 32 - tests/testthat/test-lm_robust.R | 32 - tests/testthat/test-lme.R | 95 ++- tests/testthat/test-lmer.R | 253 +++++++--- tests/testthat/test-lmrob_base.R | 32 - tests/testthat/test-logistf.R | 45 + tests/testthat/test-mixed.R | 221 ++++++-- tests/testthat/test-mlogit.R | 53 +- tests/testthat/test-model_data.R | 19 tests/testthat/test-multinom.R | 40 + tests/testthat/test-mvrstanarm.R | 146 +++-- tests/testthat/test-namespace.R | 69 ++ tests/testthat/test-negbin.R | 68 ++ tests/testthat/test-ols.R | 24 tests/testthat/test-panelr.R | 174 ++++++ tests/testthat/test-plm.R | 69 ++ tests/testthat/test-polr.R | 66 ++ tests/testthat/test-psm.R | 56 +- tests/testthat/test-response_data2.R | 131 ++++- tests/testthat/test-rlmer.R | 214 ++++++-- tests/testthat/test-rms.R | 22 tests/testthat/test-rq.R | 53 +- tests/testthat/test-rstanarm.R | 267 ++++++++-- tests/testthat/test-spatial.R |only tests/testthat/test-speedglm.R | 43 + tests/testthat/test-speedlm.R | 81 ++- tests/testthat/test-survey.R | 34 + tests/testthat/test-survfit.R | 30 - tests/testthat/test-survreg.R | 38 + tests/testthat/test-tobit.R | 107 +++- tests/testthat/test-truncreg.R | 28 - tests/testthat/test-vgam.R | 113 +++- tests/testthat/test-vglm.R | 46 + tests/testthat/test-zeroinfl.R | 66 ++ vignettes/insight.Rmd | 4 156 files changed, 6511 insertions(+), 1961 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between devtools versions 2.1.0 dated 2019-07-06 and 2.2.0 dated 2019-09-07
devtools-2.1.0/devtools/R/doctor.R |only devtools-2.1.0/devtools/inst/templates |only devtools-2.1.0/devtools/man/dr_devtools.Rd |only devtools-2.1.0/devtools/man/dr_github.Rd |only devtools-2.2.0/devtools/DESCRIPTION | 24 +- devtools-2.2.0/devtools/MD5 | 154 +++++++--------- devtools-2.2.0/devtools/NAMESPACE | 13 + devtools-2.2.0/devtools/NEWS.md | 49 +++++ devtools-2.2.0/devtools/R/bash.R | 3 devtools-2.2.0/devtools/R/build-manual.R | 3 devtools-2.2.0/devtools/R/build-readme.R | 2 devtools-2.2.0/devtools/R/build-site.R | 2 devtools-2.2.0/devtools/R/check-devtools.R | 3 devtools-2.2.0/devtools/R/check-doc.R | 8 devtools-2.2.0/devtools/R/check-git.R | 8 devtools-2.2.0/devtools/R/check-win.R | 55 ++++- devtools-2.2.0/devtools/R/check.R | 7 devtools-2.2.0/devtools/R/create.R |only devtools-2.2.0/devtools/R/document.R | 31 ++- devtools-2.2.0/devtools/R/install.R | 17 + devtools-2.2.0/devtools/R/lint.R | 6 devtools-2.2.0/devtools/R/missing-s3.R | 3 devtools-2.2.0/devtools/R/pkgbuild.R | 5 devtools-2.2.0/devtools/R/pkgload.R | 3 devtools-2.2.0/devtools/R/r-hub.R | 2 devtools-2.2.0/devtools/R/release.R | 43 ---- devtools-2.2.0/devtools/R/reload.R | 3 devtools-2.2.0/devtools/R/remotes.R | 73 ++++++- devtools-2.2.0/devtools/R/revdep.R | 2 devtools-2.2.0/devtools/R/run-examples.R | 3 devtools-2.2.0/devtools/R/run-source.R | 5 devtools-2.2.0/devtools/R/show-news.R | 5 devtools-2.2.0/devtools/R/sitrep.R |only devtools-2.2.0/devtools/R/spell-check.R | 3 devtools-2.2.0/devtools/R/test.R | 25 +- devtools-2.2.0/devtools/R/uninstall.R | 4 devtools-2.2.0/devtools/R/utils.R | 30 +++ devtools-2.2.0/devtools/R/vignettes.R | 13 - devtools-2.2.0/devtools/R/wd.R | 3 devtools-2.2.0/devtools/R/zzz.R | 8 devtools-2.2.0/devtools/README.md | 15 + devtools-2.2.0/devtools/build/vignette.rds |binary devtools-2.2.0/devtools/inst/doc/dependencies.html | 10 - devtools-2.2.0/devtools/man/bash.Rd | 4 devtools-2.2.0/devtools/man/build.Rd | 3 devtools-2.2.0/devtools/man/build_manual.Rd | 4 devtools-2.2.0/devtools/man/build_vignettes.Rd | 4 devtools-2.2.0/devtools/man/check.Rd | 4 devtools-2.2.0/devtools/man/check_man.Rd | 4 devtools-2.2.0/devtools/man/check_rhub.Rd | 4 devtools-2.2.0/devtools/man/check_win.Rd | 13 - devtools-2.2.0/devtools/man/clean_vignettes.Rd | 4 devtools-2.2.0/devtools/man/create.Rd |only devtools-2.2.0/devtools/man/dev_sitrep.Rd |only devtools-2.2.0/devtools/man/devtools-deprecated.Rd | 11 - devtools-2.2.0/devtools/man/document.Rd | 8 devtools-2.2.0/devtools/man/figures/logo.svg | 2 devtools-2.2.0/devtools/man/git_checks.Rd | 4 devtools-2.2.0/devtools/man/install.Rd | 4 devtools-2.2.0/devtools/man/install_deps.Rd | 4 devtools-2.2.0/devtools/man/lint.Rd | 4 devtools-2.2.0/devtools/man/missing_s3.Rd | 4 devtools-2.2.0/devtools/man/reexports.Rd | 15 - devtools-2.2.0/devtools/man/release.Rd | 15 - devtools-2.2.0/devtools/man/release_checks.Rd | 4 devtools-2.2.0/devtools/man/reload.Rd | 4 devtools-2.2.0/devtools/man/remote-reexports.Rd |only devtools-2.2.0/devtools/man/run_examples.Rd | 4 devtools-2.2.0/devtools/man/show_news.Rd | 4 devtools-2.2.0/devtools/man/spell_check.Rd | 4 devtools-2.2.0/devtools/man/submit_cran.Rd | 4 devtools-2.2.0/devtools/man/test.Rd | 4 devtools-2.2.0/devtools/man/uninstall.Rd | 11 - devtools-2.2.0/devtools/man/wd.Rd | 4 devtools-2.2.0/devtools/tests/testthat/test-sitrep.R |only devtools-2.2.0/devtools/tests/testthat/test-vignettes.R | 14 - 76 files changed, 503 insertions(+), 312 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression models and get relevant evaluation
metrics in a tidy format. Validate the best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model.
Currently supports linear regression, logistic regression and
(some functions only) multiclass classification.
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R., & Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Benjamin Hugh Zachariae [aut]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 0.1.2 dated 2019-08-05 and 0.2.0 dated 2019-09-07
cvms-0.1.2/cvms/man/figures/README-unnamed-chunk-15-1.png |only cvms-0.1.2/cvms/man/figures/README-unnamed-chunk-15-2.png |only cvms-0.1.2/cvms/man/figures/README-unnamed-chunk-15-3.png |only cvms-0.1.2/cvms/man/figures/README-unnamed-chunk-15-4.png |only cvms-0.1.2/cvms/man/figures/README-unnamed-chunk-16-1.png |only cvms-0.2.0/cvms/DESCRIPTION | 14 cvms-0.2.0/cvms/MD5 | 96 - cvms-0.2.0/cvms/NAMESPACE | 4 cvms-0.2.0/cvms/NEWS.md | 36 cvms-0.2.0/cvms/R/baseline.R | 244 ++ cvms-0.2.0/cvms/R/baseline_binomial.R | 175 + cvms-0.2.0/cvms/R/baseline_gaussian.R | 111 - cvms-0.2.0/cvms/R/baseline_multinomial.R |only cvms-0.2.0/cvms/R/binomial_classification_eval.R | 291 --- cvms-0.2.0/cvms/R/binomial_eval.R |only cvms-0.2.0/cvms/R/combine_predictors.R | 2 cvms-0.2.0/cvms/R/cross_validate.R | 14 cvms-0.2.0/cvms/R/cross_validate_fn_single.R | 23 cvms-0.2.0/cvms/R/evaluate.R | 879 +++++++++- cvms-0.2.0/cvms/R/extract_model_effects.R | 1 cvms-0.2.0/cvms/R/helpers.R | 117 + cvms-0.2.0/cvms/R/linear_regression_eval.R | 181 +- cvms-0.2.0/cvms/R/metrics.R | 27 cvms-0.2.0/cvms/R/multinomial_classification_eval.R |only cvms-0.2.0/cvms/R/multinomial_probability_tibble.R |only cvms-0.2.0/cvms/R/nesting_predictions.R |only cvms-0.2.0/cvms/R/package_info.R | 5 cvms-0.2.0/cvms/R/prepare_evaluation.R |only cvms-0.2.0/cvms/R/select_metrics.R | 55 cvms-0.2.0/cvms/R/set_metrics.R |only cvms-0.2.0/cvms/R/validate.R | 2 cvms-0.2.0/cvms/R/validate_fn_single.R | 25 cvms-0.2.0/cvms/README.md | 331 +++ cvms-0.2.0/cvms/inst/doc/Introduction_to_cvms.R | 118 + cvms-0.2.0/cvms/inst/doc/Introduction_to_cvms.Rmd | 168 + cvms-0.2.0/cvms/inst/doc/Introduction_to_cvms.html | 510 +++-- cvms-0.2.0/cvms/man/baseline.Rd | 202 ++ cvms-0.2.0/cvms/man/combine_predictors.Rd | 2 cvms-0.2.0/cvms/man/cross_validate.Rd | 14 cvms-0.2.0/cvms/man/cvms.Rd | 5 cvms-0.2.0/cvms/man/evaluate.Rd |only cvms-0.2.0/cvms/man/figures/README-unnamed-chunk-19-1.png |only cvms-0.2.0/cvms/man/figures/README-unnamed-chunk-19-2.png |only cvms-0.2.0/cvms/man/figures/README-unnamed-chunk-19-3.png |only cvms-0.2.0/cvms/man/figures/README-unnamed-chunk-19-4.png |only cvms-0.2.0/cvms/man/figures/README-unnamed-chunk-20-1.png |only cvms-0.2.0/cvms/man/figures/cvms_logo_242x280_250dpi.png |only cvms-0.2.0/cvms/man/multiclass_probability_tibble.Rd |only cvms-0.2.0/cvms/man/select_metrics.Rd | 5 cvms-0.2.0/cvms/man/validate.Rd | 14 cvms-0.2.0/cvms/tests/testthat/test_baseline.R | 779 ++++++++ cvms-0.2.0/cvms/tests/testthat/test_cross_validate.R | 24 cvms-0.2.0/cvms/tests/testthat/test_evaluate.R |only cvms-0.2.0/cvms/tests/testthat/test_helpers.R | 4 cvms-0.2.0/cvms/tests/testthat/test_metrics.R | 8 cvms-0.2.0/cvms/vignettes/Introduction_to_cvms.Rmd | 168 + cvms-0.2.0/cvms/vignettes/man/figures/vignette_intro-unnamed-chunk-19-1.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_intro-unnamed-chunk-19-2.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_intro-unnamed-chunk-19-3.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_intro-unnamed-chunk-19-4.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_intro-unnamed-chunk-20-1.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_repeated-unnamed-chunk-9-1.png |only cvms-0.2.0/cvms/vignettes/man/figures/vignette_repeated-unnamed-chunk-9-2.png |only 63 files changed, 3705 insertions(+), 949 deletions(-)
Title: Read Large Text Files
Description: Read large text files by splitting them in smaller files.
Package bigreadr also provides some convenient wrappers of fread/fwrite.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigreadr versions 0.1.7 dated 2019-08-01 and 0.1.9 dated 2019-09-07
bigreadr-0.1.7/bigreadr/R/nlines.R |only bigreadr-0.1.7/bigreadr/src/split.cpp |only bigreadr-0.1.9/bigreadr/DESCRIPTION | 10 +- bigreadr-0.1.9/bigreadr/MD5 | 23 +++--- bigreadr-0.1.9/bigreadr/R/RcppExports.R | 21 +++++ bigreadr-0.1.9/bigreadr/R/split.R | 7 + bigreadr-0.1.9/bigreadr/README.md | 2 bigreadr-0.1.9/bigreadr/inst/testdata |only bigreadr-0.1.9/bigreadr/man/nlines.Rd | 5 - bigreadr-0.1.9/bigreadr/man/split_file.Rd | 6 + bigreadr-0.1.9/bigreadr/src/RcppExports.cpp | 21 ++++- bigreadr-0.1.9/bigreadr/src/nlines-split.cpp |only bigreadr-0.1.9/bigreadr/tests/testthat/test-nlines.R | 21 ++++- bigreadr-0.1.9/bigreadr/tests/testthat/test-split.R | 70 +++++++++++++++++-- 14 files changed, 149 insertions(+), 37 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut] (<https://orcid.org/0000-0002-7736-0077>),
Martin Morgan [ctb],
Christine Stawitz [rev] (Christine reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/315>),
Carl Ganz [rev] (Carl reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/315>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.2.5 dated 2019-08-02 and 1.2.6 dated 2019-09-07
DESCRIPTION | 6 +- MD5 | 15 +++--- NEWS.md | 8 +++ R/zzz.R | 14 +++--- README.md | 30 +++++++++++-- inst/CITATION |only inst/doc/USCSXenaTools.Rmd | 28 +++++++++++- inst/doc/USCSXenaTools.html | 97 ++++++++++++++++++++++++++++++++------------ vignettes/USCSXenaTools.Rmd | 28 +++++++++++- 9 files changed, 174 insertions(+), 52 deletions(-)
Title: Threshold Matching for Thick Description for Optimal Matching in
Observational Studies
Description: Conducts several closest matched pairs to strengthen a matched quantitative comparison of many pairs by thick description in observational studies.
Rosenbaum, P. R. (2017). <doi:10.1080/10618600.2016.1152971>.
Author: Ruoqi Yu
Maintainer: Ruoqi Yu <ruoqiyu@wharton.upenn.edu>
Diff between thickmatch versions 0.1.0 dated 2019-09-03 and 0.3.0 dated 2019-09-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/threshold_match.R | 2 +- man/feasible.Rd | 3 ++- man/netvr.Rd | 8 +++++--- man/nysr.Rd | 32 ++++++++++++++++---------------- man/threshold_match.Rd | 8 ++++---- 7 files changed, 37 insertions(+), 34 deletions(-)
Title: Functions to Study Etiologic Heterogeneity
Description: A collection of functions related to the study of etiologic heterogeneity both across disease subtypes and across individual disease markers. The included functions allow one to quantify the extent of etiologic heterogeneity in the context of a case-control study, and provide p-values to test for etiologic heterogeneity across individual risk factors. Begg CB, Zabor EC, Bernstein JL, Bernstein L, Press MF, Seshan VE (2013) <doi: 10.1002/sim.5902>.
Author: Emily C. Zabor [aut, cre]
Maintainer: Emily C. Zabor <zabore2@ccf.org>
Diff between riskclustr versions 0.1.0 dated 2019-01-17 and 0.2 dated 2019-09-07
DESCRIPTION | 16 +++--- MD5 | 46 +++++++++++------- NAMESPACE | 1 NEWS.md | 6 ++ R/d.R | 2 R/dstar.R | 2 R/eh_test_marker.R | 18 +++---- R/eh_test_subtype.R | 26 ++++++---- R/optimal_kmeans_d.R | 8 +-- R/posthoc_factor_test.R |only README.md | 21 ++++++++ build/vignette.rds |binary inst/doc/calculate_d.html | 71 ++++++++++++++++------------ inst/doc/contribute.R |only inst/doc/contribute.Rmd |only inst/doc/contribute.html |only inst/doc/eh_test.Rmd | 32 ++++++------ inst/doc/eh_test.html | 109 +++++++++++++++++++++++--------------------- inst/doc/factor_pvalue.R |only inst/doc/factor_pvalue.Rmd |only inst/doc/factor_pvalue.html |only inst/doc/optimal_d.html | 69 +++++++++++++++------------ man/eh_test_marker.Rd | 2 man/eh_test_subtype.Rd | 6 ++ man/optimal_kmeans_d.Rd | 2 man/posthoc_factor_test.Rd |only vignettes/contribute.Rmd |only vignettes/eh_test.Rmd | 32 ++++++------ vignettes/factor_pvalue.Rmd |only 29 files changed, 271 insertions(+), 198 deletions(-)
Title: 'sf'-Compatible Interface to 'Google Maps' APIs
Description: Interface to the 'Google Maps' APIs: (1) routing directions based on the 'Directions' API, returned as 'sf' objects, either as single feature per alternative route, or a single feature per segment per alternative route; (2) travel distance or time matrices based on the 'Distance Matrix' API; (3) geocoded locations based on the 'Geocode' API, returned as 'sf' objects, either points or bounds.
Author: Michael Dorman [aut, cre],
Tom Buckley [ctb],
Alex Dannenberg [ctb],
Mihir Bhaskar [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between mapsapi versions 0.4.1 dated 2019-06-14 and 0.4.2 dated 2019-09-07
DESCRIPTION | 12 +++++++----- LICENSE | 2 +- MD5 | 14 +++++++------- NEWS.md | 6 +++++- R/mp_geocode.R | 17 +++++++++++++++++ build/vignette.rds |binary inst/doc/intro.html | 20 ++++++++++---------- man/mp_geocode.Rd | 5 ++++- 8 files changed, 51 insertions(+), 25 deletions(-)
Title: Interface to the 'g:Profiler' Toolkit
Description: This package has been deprecated and will not be updated.
New users should use the package 'gprofiler2' (<https://CRAN.R-project.org/package=gprofiler2>)
for up-to-date data and improved functionality.
Functional enrichment analysis, gene identifier conversion and
mapping homologous genes across related organisms via the 'g:Profiler' toolkit
(<https://biit.cs.ut.ee/gprofiler/>).
Author: Juri Reimand <juri.reimand@ut.ee>, Raivo Kolde
<rkolde@gmail.com>, Tambet Arak <tambet.arak@gmail.com>
Maintainer: Ivan Kuzmin <ivan.kuzmin@ut.ee>
Diff between gProfileR versions 0.6.7 dated 2018-10-24 and 0.6.8 dated 2019-09-07
ChangeLog | 4 ++++ DESCRIPTION | 13 ++++++++----- MD5 | 10 +++++----- man/gconvert.Rd | 5 +++-- man/gorth.Rd | 6 +++--- man/gprofiler.Rd | 11 ++++++----- 6 files changed, 29 insertions(+), 20 deletions(-)
Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs
<https://developers.google.com/apis-explorer/> easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>),
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb],
David Kulp [ctb],
Joe Cheng [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 1.0.0 dated 2019-08-31 and 1.1.0 dated 2019-09-07
DESCRIPTION | 6 MD5 | 34 - NEWS.md | 6 R/auto_auth.R | 23 - R/gce.R | 3 R/utility.R | 2 README.md | 15 inst/doc/advanced-building.html | 6 inst/doc/building.html | 4 inst/doc/google-authentication-types.Rmd | 56 ++ inst/doc/google-authentication-types.html | 607 +++++++++++++++--------------- inst/doc/setup.Rmd | 38 - inst/doc/setup.html | 39 - inst/doc/troubleshooting.html | 4 man/gar_auto_auth.Rd | 2 man/gar_gce_auth_default.Rd | 3 vignettes/google-authentication-types.Rmd | 56 ++ vignettes/setup.Rmd | 38 - 18 files changed, 521 insertions(+), 421 deletions(-)
Title: Argentina's Permanent Household Survey Data and Manipulation
Utilities
Description: Tools to download and manipulate the Permanent Household Survey from Argentina
(EPH is the Spanish acronym for Permanent Household Survey).
e.g: get_microdata() for downloading the datasets, get_poverty_lines() for downloading the official poverty baskets,
calculate_poverty() for the calculation of stating if a household is in poverty or not, following the official methodology.
organize_panels() is used to concatenate observations from different periods, and organize_labels()
adds the official labels to the data. The implemented methods are based on INDEC (2016) <http://www.estadistica.ec.gba.gov.ar/dpe/images/SOCIEDAD/EPH_metodologia_22_pobreza.pdf>.
As this package works with the argentinian Permanent Household Survey and its main audience is from this country,
the documentation was written in Spanish.
Author: Diego Kozlowski [aut, cre] (<https://orcid.org/0000-0002-5396-3471>),
Pablo Tiscornia [aut],
Guido Weksler [aut],
Natsumi Shokida [aut],
German Rosati [aut]
Maintainer: Diego Kozlowski <diegokoz92@gmail.com>
Diff between eph versions 0.1.0 dated 2019-09-03 and 0.1.1 dated 2019-09-07
DESCRIPTION | 11 ++++++----- MD5 | 7 ++++--- NEWS.md |only R/get_microdata.R | 3 ++- README.md | 19 +++++++++++++++---- 5 files changed, 27 insertions(+), 13 deletions(-)
Title: Collection of Utility Functions
Description: A handy collection of utility functions designed to aid in package development, plotting and scientific research.
Package development functionalities includes among others tools such as cross-referencing package imports with the description file,
analysis of redundant package imports, editing of the description file and the creation of package badges for GitHub.
Some of the other functionalities include automatic package installation and loading, plotting points without overlap,
creating nice breaks for plots, overview tables and many more handy utility functions.
Author: H.G. van den Boorn [aut, cre]
Maintainer: H.G. van den Boorn <hvdboorn@gmail.com>
Diff between hgutils versions 0.2.5 dated 2018-11-28 and 0.2.7 dated 2019-09-07
hgutils-0.2.5/hgutils/tools/shields.R |only hgutils-0.2.7/hgutils/DESCRIPTION | 13 hgutils-0.2.7/hgutils/MD5 | 42 +- hgutils-0.2.7/hgutils/NAMESPACE | 15 hgutils-0.2.7/hgutils/NEWS | 1 hgutils-0.2.7/hgutils/R/description-utils.R | 61 +++ hgutils-0.2.7/hgutils/R/flowchart-utils.R | 19 - hgutils-0.2.7/hgutils/R/misc-utils.R | 9 hgutils-0.2.7/hgutils/R/package-loading.R | 218 +++++++++--- hgutils-0.2.7/hgutils/R/reduction-utils.R |only hgutils-0.2.7/hgutils/R/table-utils.R | 62 ++- hgutils-0.2.7/hgutils/README.md | 15 hgutils-0.2.7/hgutils/inst/WORDLIST | 8 hgutils-0.2.7/hgutils/man/add_badges.Rd |only hgutils-0.2.7/hgutils/man/analyze_package_imports.Rd |only hgutils-0.2.7/hgutils/man/as.character.patient_flowchart.Rd |only hgutils-0.2.7/hgutils/man/create_table_one.Rd | 9 hgutils-0.2.7/hgutils/man/description-functions.Rd | 3 hgutils-0.2.7/hgutils/man/dot-regexl.Rd |only hgutils-0.2.7/hgutils/man/format_duration.Rd | 2 hgutils-0.2.7/hgutils/man/load_package_collection.Rd |only hgutils-0.2.7/hgutils/man/load_packages.Rd | 47 -- hgutils-0.2.7/hgutils/tests/testthat/DESCRIPTION | 2 hgutils-0.2.7/hgutils/tools/analyze_package_loading.R |only hgutils-0.2.7/hgutils/tools/build_package.R | 10 hgutils-0.2.7/hgutils/tools/check_packages.R | 13 26 files changed, 401 insertions(+), 148 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires
specifically created procedures, which are implemented as steps
according to the 'recipes' package. These steps allows for
tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 0.0.1 dated 2018-12-17 and 0.0.2 dated 2019-09-07
DESCRIPTION | 33 MD5 | 83 + NAMESPACE | 26 NEWS.md | 12 R/aaa.R | 16 R/data.R | 1 R/hashing.R | 43 R/sequence_onehot.R |only R/stem.R | 72 - R/stopwords.R | 22 R/textfeature.R |only R/tf.R | 54 - R/tfidf.R | 37 R/tokenfilter.R | 61 - R/tokenize.R | 28 R/tokenmerge.R |only R/untokenize.R | 40 R/word2vec.R |only README.md | 66 - build/textrecipes.pdf |only build/vignette.rds |binary inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 463 +++++----- man/count_functions.Rd |only man/figures |only man/step_sequence_onehot.Rd |only man/step_stem.Rd | 28 man/step_textfeature.Rd |only man/step_texthash.Rd | 8 man/step_tf.Rd | 9 man/step_tfidf.Rd | 5 man/step_tokenfilter.Rd | 14 man/step_tokenmerge.Rd |only man/step_untokenize.Rd | 14 man/step_word2vec.Rd |only tests/testthat/test-hashing.R | 32 tests/testthat/test-sequence_onehot.R |only tests/testthat/test-stem.R | 26 tests/testthat/test-stopwords.R | 2 tests/testthat/test-textfeatures.R |only tests/testthat/test-tf.R | 2 tests/testthat/test-tfidf.R | 38 tests/testthat/test-tokenfilter.R | 4 tests/testthat/test-tokenize.R | 2 tests/testthat/test-tokenmerge.R |only tests/testthat/test-untokenize.R | 2 tests/testthat/test-word2vec.R |only 46 files changed, 717 insertions(+), 526 deletions(-)
Title: Build 'data.table' Expressions with Data Manipulation Verbs
Description: A specialization of 'dplyr' data manipulation verbs that parse and build expressions
which are ultimately evaluated by 'data.table', letting it handle all optimizations. A set of
additional verbs is also provided to facilitate some common operations on a subset of the data.
Author: Alexis Sarda-Espinosa [cre, aut]
Maintainer: Alexis Sarda-Espinosa <alexis.sarda@gmail.com>
Diff between table.express versions 0.3.0 dated 2019-08-02 and 0.3.1 dated 2019-09-07
DESCRIPTION | 13 MD5 | 67 - NAMESPACE | 11 R/R6-ExprBuilder.R | 32 R/UTILS-misc.R | 28 R/VERBS-anti_join.R | 2 R/VERBS-arrange.R | 2 R/VERBS-distinct.R | 2 R/VERBS-filter.R | 2 R/VERBS-group_by.R | 16 R/VERBS-inner_join.R | 2 R/VERBS-left_join.R | 2 R/VERBS-mutate.R | 2 R/VERBS-right_join.R | 10 R/VERBS-select.R | 2 R/VERBS-semi_join.R | 8 R/VERBS-summarize.R |only R/VERBS-transmute.R | 2 R/pkg.R | 7 build/vignette.rds |binary inst/doc/joins.html | 1454 +++++++++++++------------- inst/doc/table.express.Rmd | 7 inst/doc/table.express.html | 1852 +++++++++++++++++----------------- man/joins.Rd | 6 man/reexports.Rd | 7 man/summarize-table.express.Rd |only man/table.express-package.Rd | 17 tests/testthat/test-10-unit.R | 1 tests/testthat/unit/test-anti_join.R | 14 tests/testthat/unit/test-group_by.R | 10 tests/testthat/unit/test-inner_join.R | 14 tests/testthat/unit/test-left_join.R | 14 tests/testthat/unit/test-right_join.R | 19 tests/testthat/unit/test-semi_join.R | 14 tests/testthat/unit/test-summarize.R |only vignettes/table.express.Rmd | 7 36 files changed, 1928 insertions(+), 1718 deletions(-)
Title: R Interface to 'Bloomberg Data License'
Description: R interface to access prices and market data with the
'Bloomberg Data License' service from
<https://www.bloomberg.com/professional/product/data-license/>.
As a prerequisite, a valid Data License from 'Bloomberg' is needed
together with the corresponding SFTP credentials and whitelisting
of the IP from which accessing the service.
This software and its author are in no way affiliated,
endorsed, or approved by 'Bloomberg' or any of its affiliates.
'Bloomberg' is a registered trademark.
Author: Emanuele Guidotti [aut, cre] (<https://orcid.org/0000-0002-8961-6623>)
Maintainer: Emanuele Guidotti <emanuele.guidotti@hotmail.it>
Diff between RblDataLicense versions 0.2.0 dated 2019-06-14 and 0.2.1 dated 2019-09-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/core.R | 14 ++++++-------- man/RblConnect.Rd | 11 +++++++++-- 4 files changed, 21 insertions(+), 16 deletions(-)
More information about RblDataLicense at CRAN
Permanent link
Title: General Purpose 'Oai-PMH' Services Client
Description: A general purpose client to work with any 'OAI-PMH'
(Open Archives Initiative Protocol for 'Metadata' Harvesting) service.
The 'OAI-PMH' protocol is described at
<http://www.openarchives.org/OAI/openarchivesprotocol.html>.
Functions are provided to work with the 'OAI-PMH' verbs: 'GetRecord',
'Identify', 'ListIdentifiers', 'ListMetadataFormats', 'ListRecords', and
'ListSets'.
Author: Scott Chamberlain [aut, cre],
Michal Bojanowski [aut] (supported by NCN grant 2012/07/D/HS6/01971)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between oai versions 0.2.2 dated 2016-11-23 and 0.3.0 dated 2019-09-07
oai-0.2.2/oai/inst/doc/oai_vignette.Rmd |only oai-0.2.2/oai/inst/doc/oai_vignette.html |only oai-0.2.2/oai/inst/vign/oai_vignette.Rmd |only oai-0.2.2/oai/inst/vign/oai_vignette.md |only oai-0.2.2/oai/src |only oai-0.2.2/oai/vignettes/oai_vignette.Rmd |only oai-0.3.0/oai/DESCRIPTION | 21 - oai-0.3.0/oai/LICENSE | 2 oai-0.3.0/oai/MD5 | 93 ++--- oai-0.3.0/oai/NEWS.md | 20 + oai-0.3.0/oai/R/count_identifiers.R | 21 - oai-0.3.0/oai/R/dumpers.R | 97 ++--- oai-0.3.0/oai/R/get_record.R | 32 - oai-0.3.0/oai/R/handle_errors.R | 5 oai-0.3.0/oai/R/id.R | 17 oai-0.3.0/oai/R/list_identifiers.R | 23 - oai-0.3.0/oai/R/list_metadataformats.R | 12 oai-0.3.0/oai/R/list_records.R | 18 oai-0.3.0/oai/R/list_sets.R | 8 oai-0.3.0/oai/R/load_providers.R | 6 oai-0.3.0/oai/R/oai-package.R | 46 +- oai-0.3.0/oai/R/oai_available.R | 15 oai-0.3.0/oai/R/record_parsers.R | 6 oai-0.3.0/oai/R/update_providers.R | 29 - oai-0.3.0/oai/R/zzz.R | 16 oai-0.3.0/oai/README.md | 272 +++++++-------- oai-0.3.0/oai/build/vignette.rds |binary oai-0.3.0/oai/inst/doc/oai.Rmd |only oai-0.3.0/oai/inst/doc/oai.html |only oai-0.3.0/oai/inst/vign/oai.Rmd |only oai-0.3.0/oai/inst/vign/oai.md |only oai-0.3.0/oai/man/count_identifiers.Rd | 20 - oai-0.3.0/oai/man/dumpers.Rd | 68 +-- oai-0.3.0/oai/man/get_records.Rd | 28 - oai-0.3.0/oai/man/id.Rd | 17 oai-0.3.0/oai/man/list_identifiers.Rd | 18 oai-0.3.0/oai/man/list_metadataformats.Rd | 16 oai-0.3.0/oai/man/list_records.Rd | 23 - oai-0.3.0/oai/man/list_sets.Rd | 13 oai-0.3.0/oai/man/load_providers.Rd | 7 oai-0.3.0/oai/man/oai-package.Rd | 28 - oai-0.3.0/oai/man/oai_available.Rd | 3 oai-0.3.0/oai/man/providers.Rd | 7 oai-0.3.0/oai/man/update_providers.Rd | 20 - oai-0.3.0/oai/tests/testthat/test-count_identifiers.R | 51 +- oai-0.3.0/oai/tests/testthat/test-get_records.R | 2 oai-0.3.0/oai/tests/testthat/test-handle_errors.R | 2 oai-0.3.0/oai/tests/testthat/test-id.R | 13 oai-0.3.0/oai/tests/testthat/test-list_identifiers.R | 36 + oai-0.3.0/oai/tests/testthat/test-list_metadataformats.R | 7 oai-0.3.0/oai/tests/testthat/test-list_records.R | 24 - oai-0.3.0/oai/tests/testthat/test-list_sets.R | 3 oai-0.3.0/oai/vignettes/oai.Rmd |only 53 files changed, 592 insertions(+), 573 deletions(-)
Title: Join Tables Together on Inexact Matching
Description: Join tables together based not on whether columns
match exactly, but whether they are similar by some comparison.
Implementations include string distance and regular expression
matching.
Author: David Robinson [aut, cre],
Jennifer Bryan [ctb],
Joran Elias [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between fuzzyjoin versions 0.1.4 dated 2018-03-02 and 0.1.5 dated 2019-09-07
DESCRIPTION | 20 +- MD5 | 58 ++++---- NAMESPACE | 1 NEWS.md | 8 + R/difference_join.R | 2 R/distance_join.R | 10 + R/fuzzy_join.R | 74 ++++++---- R/genome_join.R | 24 +-- R/geo_join.R | 4 R/misspellings.R | 2 R/stringdist_join.R | 6 R/utils.R | 14 ++ README.md | 230 +++++++++++++++++----------------- build/vignette.rds |binary inst/doc/stringdist_join.Rmd | 4 inst/doc/stringdist_join.html | 168 ++++++++++++++---------- man/difference_join.Rd | 18 +- man/distance_join.Rd | 24 +-- man/fuzzy_join.Rd | 3 man/genome_join.Rd | 16 +- man/geo_join.Rd | 6 man/stringdist_join.Rd | 9 - tests/testthat/test_difference_join.R | 51 ++++++- tests/testthat/test_distance_join.R | 39 +++++ tests/testthat/test_fuzzy_join.R | 20 ++ tests/testthat/test_genome_join.R | 36 +++-- tests/testthat/test_geo_join.R | 39 ++++- tests/testthat/test_regex_join.R | 4 tests/testthat/test_stringdist_join.R | 66 +++++++-- vignettes/stringdist_join.Rmd | 4 30 files changed, 616 insertions(+), 344 deletions(-)
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous, categorical or mixed-type data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means. For mixed-type data, it provides mixed Reduced K-means and mixed Factorial K-means (van de Velden, Iodice D'Enza and Markos 2019; <DOI:10.1002/wics.1456>), which combine PCA for mixed-type data with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.3.4 dated 2019-08-20 and 1.3.5 dated 2019-09-07
DESCRIPTION | 10 +++---- MD5 | 34 +++++++++++++------------- NAMESPACE | 2 - R/EmptyKmeans.r | 4 +-- R/MCAk.r | 12 ++++----- R/boot_clusmca.R | 8 +++--- R/boot_cluspcamix.R | 8 +++--- R/clusCA.R | 64 +++++++++++++++++++++++++++++++++++++------------ R/clusmca.R | 4 +-- R/cluspca.R | 4 +-- R/cluspcamix.R | 4 +-- R/iFCB.r | 8 +++--- R/local_bootclus.R | 14 +++++----- R/plot.clusmca.R | 10 +++---- man/clusmca.Rd | 4 +-- man/cluspcamix.Rd | 4 +-- man/global_bootclus.Rd | 8 +++--- man/plot.clusmca.Rd | 4 --- 18 files changed, 119 insertions(+), 87 deletions(-)
Title: Optimal, Fast, and Reproducible Univariate Clustering
Description: Fast, optimal, and reproducible weighted univariate
clustering by dynamic programming. Four types of problem including
univariate k-means, k-median, k-segments, and multi-channel
weighted k-means are solved with guaranteed optimality and
reproducibility. The core algorithm minimizes the sum of (weighted)
within-cluster distances using respective metrics. Its advantage
over heuristic clustering in efficiency and accuracy is pronounced
at a large number of clusters k. Weighted k-means can also process
time series to perform peak calling. Multi-channel weighted k-means
groups multiple univariate signals into k clusters. An auxiliary
function generates histograms that are adaptive to patterns in data.
This package provides a powerful set of tools for univariate data
analysis with guaranteed optimality, efficiency, and reproducibility.
Author: Joe Song [aut, cre],
Hua Zhong [aut],
Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 4.2.2 dated 2018-09-24 and 4.3.0 dated 2019-09-07
Ckmeans.1d.dp-4.2.2/Ckmeans.1d.dp/NEWS |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/DESCRIPTION | 42 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/MD5 | 50 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/NAMESPACE | 2 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/NEWS.md |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/R/MultiChannel.WUC.R |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/R/RcppExports.R | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/README.md |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/build/partial.rdb |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/build/vignette.rds |binary Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/CITATION | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/REFERENCES.bib |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/doc/Ckmeans.1d.dp.html | 586 +++++----- Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/doc/Weights.Rmd | 10 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/doc/Weights.html | 344 +++-- Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/inst/doc/ahist.html | 581 +++++---- Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/Ckmeans.1d.dp-package.Rd | 25 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/Ckmeans.1d.dp.Rd | 6 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/Cksegs.1d.dp.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/MultiChannel.WUC.Rd |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/ahist.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/plot.Ckmeans.1d.dp.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/plotBIC.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/print.Ckmeans.1d.dp.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/man/print.Cksegs.1d.dp.Rd | 4 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/src/MCW_fill_SMAWK.cpp |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/src/MCW_functions.cpp |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/src/MCW_functions.h |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/src/MCW_main.cpp |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/src/RcppExports.cpp | 17 Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/tests/testthat/test_MC_WUC.R |only Ckmeans.1d.dp-4.3.0/Ckmeans.1d.dp/vignettes/Weights.Rmd | 10 32 files changed, 982 insertions(+), 723 deletions(-)
Title: Provenance Collector
Description: Defines functions that can be used to collect provenance as
an R script executes or during a console session. The output is a text
file in PROV-JSON format.
Author: Barbara Lerner [aut, cre],
Emery Boose [aut],
Elizabeth Fong [aut],
Luis Perez [aut],
Thomas Pasquier [ctb],
Matthew Lau [ctb],
Yada Pruksachatkun [ctb],
Alex Liu [ctb],
Moe Pwint Phyu [ctb],
Connor Gregorich-Trevor [ctb],
Aaron Ellison [res],
Margo Seltzer [res],
Joe Wonsil [res],
Orenna Brand [res]
Maintainer: Barbara Lerner <blerner@mtholyoke.edu>
Diff between rdtLite versions 1.1.0 dated 2019-06-05 and 1.2 dated 2019-09-07
DESCRIPTION | 13 MD5 | 40 +-- NEWS.md | 13 R/API_core.R | 619 ++++++++++++++++++++++++++++++++--------------- R/API_rdtLite.R | 44 ++- R/DDGHash.R | 11 R/DDGHash_rdtLite.R | 5 R/DDGStatement.R | 60 +++- R/DDGStatement_rdtLite.R | 5 R/DataNodes.R | 94 +++++-- R/Edges.R | 1 R/FunctionsDefined.R | 8 R/IOTrace.R | 134 +++++++--- R/ProcNodes.R | 7 R/RDataTracker_core.R | 390 +++++++++++++++++++++++++++-- R/RDataTracker_rdtLite.R | 15 - build |only inst/doc |only man/prov.json.Rd | 2 man/prov.run.Rd | 10 vignettes |only 21 files changed, 1134 insertions(+), 337 deletions(-)
Title: Easy Data Import Using GUI File Picker and Seamless
Communication Between an Excel and R
Description: Choosing any rectangular data file using interactive GUI dialog box, and seamlessly manipulating tidy data between an 'Excel' window and R session.
Author: JooYoung Seo [aut, cre] (<https://orcid.org/0000-0002-4064-6012>),
Soyoung Choi [aut] (<https://orcid.org/0000-0002-0998-3352>),
hyun seung Lee [ctb],
Jonghoen Kim [ctb]
Maintainer: JooYoung Seo <jooyoung@psu.edu>
Diff between ezpickr versions 1.0.5 dated 2019-04-22 and 1.1.0 dated 2019-09-07
DESCRIPTION | 12 +-- MD5 | 35 +++++------ NAMESPACE | 2 NEWS.md | 6 + R/pick.R | 5 - README.md | 24 +++---- build/vignette.rds |binary inst/CITATION |only inst/NEWS | 6 + inst/doc/ezpickr_vignette.R | 6 - inst/doc/ezpickr_vignette.Rmd | 13 +--- inst/doc/ezpickr_vignette.html | 80 +++++++++++++------------- man/ezpickr-package.Rd | 68 +++++++++++----------- man/pick.Rd | 126 ++++++++++++++++++++--------------------- man/picko.Rd | 122 +++++++++++++++++++-------------------- man/pipe.Rd | 22 +++---- man/view.Rd | 98 +++++++++++++++---------------- man/viewxl.Rd | 92 ++++++++++++++--------------- vignettes/ezpickr_vignette.Rmd | 13 +--- 19 files changed, 370 insertions(+), 360 deletions(-)
Title: A Wrapper of the 'JavaScript' Library 'jExcel'
Description: An R interface to 'jExcel' library to create web-based interactive tables and spreadsheets compatible with 'Excel' or any other spreadsheet software.
Author: Swechhya Bista [aut, cre],
Kent Russell [ctb],
Mārcis Bratka [ctb]
Maintainer: Swechhya Bista <swechhyabista@gmail.com>
Diff between excelR versions 0.2.1 dated 2019-08-19 and 0.3.0 dated 2019-09-07
DESCRIPTION | 6 MD5 | 27 ++-- NEWS.md | 6 R/get_col_types.R |only R/jexcel.R | 38 +++++ inst/htmlwidgets/jexcel.js | 173 +++++++++++++++------------ inst/htmlwidgets/jexcel.yaml | 2 inst/htmlwidgets/lib/jexcel/css/custom.css |only inst/htmlwidgets/lib/jexcel/css/materialicon |only man/excelTable.Rd | 8 + tests/testthat/test_autoColType.R |only tests/testthat/test_creation.R | 6 tests/testthat/test_data.R | 7 + tests/testthat/test_get_col_types.R |only 14 files changed, 178 insertions(+), 95 deletions(-)
Title: TraMineR Extension
Description: Collection of ancillary functions and utilities to be used in conjunction with the 'TraMineR' package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of 'TraMineR'.
Author: Gilbert Ritschard [aut, cre, ths, cph]
(<https://orcid.org/0000-0001-7776-0903>),
Matthias Studer [aut] (<https://orcid.org/0000-0002-6269-1412>),
Reto Buergin [aut],
Alexis Gabadinho [ctb],
Pierre-Alexandre Fonta [ctb],
Nicolas Muller [ctb],
Patrick Rousset [ctb]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineRextras versions 0.4.5 dated 2019-05-06 and 0.4.6 dated 2019-09-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/seqedplot.R | 37 +++++++++++++++++++++++++++---------- inst/NEWS | 22 ++++++++++++++++++---- inst/NEWS.Rd | 19 +++++++++++++++++++ man/seqedplot.Rd | 11 ++++++----- 6 files changed, 79 insertions(+), 28 deletions(-)
More information about TraMineRextras at CRAN
Permanent link
Title: A Collection of Full Defined Distribution Tails
Description: A full definition for Weibull tails and Full-Tails Gamma and tools for fitting these distributions to empirical tails. This package build upon the paper by del Castillo, Joan & Daoudi, Jalila & Serra, Isabel. (2012) <doi:10.1017/asb.2017.9>.
Author: Sergi Vilardell [aut, cre],
Àlvar Pineda [aut]
Maintainer: Sergi Vilardell <sergivilardell13@gmail.com>
Diff between distTails versions 0.1.1 dated 2019-07-18 and 0.1.2 dated 2019-09-07
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/FTG-density.R | 2 +- R/FTG-loglikelihood.R | 2 +- R/FTG-probability.R | 4 ++-- R/FTG_quantile.R | 3 +-- R/fittail.R | 7 +++---- man/dFTG.Rd | 2 +- man/fittail.Rd | 5 ++--- man/lFTG.Rd | 2 +- man/pFTG.Rd | 2 +- man/qFTG.Rd | 3 +-- 12 files changed, 29 insertions(+), 33 deletions(-)
Title: R Client for the 'Civis data science API'
Description: A convenient interface for making
requests directly to the 'Civis data science API' <https://www.civisanalytics.com/platform/>.
Author: Patrick Miller [cre, aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb],
Madison Hobbs [ctb],
Anna Bladey [ctb]
Maintainer: Patrick Miller <pmiller@civisanalytics.com>
Diff between civis versions 2.0.0 dated 2019-06-19 and 2.1.0 dated 2019-09-07
civis-2.0.0/civis/man/reports_list_snapshots.Rd |only civis-2.0.0/civis/man/reports_patch_snapshots.Rd |only civis-2.0.0/civis/man/reports_post_snapshots.Rd |only civis-2.0.0/civis/man/results_list_snapshots.Rd |only civis-2.0.0/civis/man/results_patch_snapshots.Rd |only civis-2.0.0/civis/man/results_post_snapshots.Rd |only civis-2.1.0/civis/DESCRIPTION | 6 civis-2.1.0/civis/MD5 | 280 - civis-2.1.0/civis/NAMESPACE | 24 civis-2.1.0/civis/R/await.R | 5 civis-2.1.0/civis/R/civis_future.R | 4 civis-2.1.0/civis/R/client_base.R | 24 civis-2.1.0/civis/R/generated_client.R | 1636 ++++++---- civis-2.1.0/civis/R/scripts.R | 35 civis-2.1.0/civis/build/vignette.rds |binary civis-2.1.0/civis/inst/doc/civis_scripts.Rmd | 8 civis-2.1.0/civis/inst/doc/civis_scripts.html | 11 civis-2.1.0/civis/inst/scripts/r_remote_eval.R | 21 civis-2.1.0/civis/man/CivisFuture.Rd | 2 civis-2.1.0/civis/man/aliases_get.Rd | 2 civis-2.1.0/civis/man/aliases_get_object_type.Rd | 4 civis-2.1.0/civis/man/aliases_list.Rd | 4 civis-2.1.0/civis/man/aliases_patch.Rd | 4 civis-2.1.0/civis/man/aliases_post.Rd | 4 civis-2.1.0/civis/man/aliases_put.Rd | 4 civis-2.1.0/civis/man/apps_delete_instances_projects.Rd | 6 civis-2.1.0/civis/man/apps_list_instances_projects.Rd | 6 civis-2.1.0/civis/man/apps_put_instances_projects.Rd | 6 civis-2.1.0/civis/man/await.Rd | 6 civis-2.1.0/civis/man/civis_platform.Rd | 2 civis-2.1.0/civis/man/databases_post_schemas_scan.Rd | 4 civis-2.1.0/civis/man/enhancements_delete_cass_ncoa_projects.Rd | 6 civis-2.1.0/civis/man/enhancements_delete_geocode_projects.Rd | 6 civis-2.1.0/civis/man/enhancements_list_cass_ncoa_projects.Rd | 6 civis-2.1.0/civis/man/enhancements_list_geocode_projects.Rd | 6 civis-2.1.0/civis/man/enhancements_put_cass_ncoa_projects.Rd | 6 civis-2.1.0/civis/man/enhancements_put_geocode_projects.Rd | 6 civis-2.1.0/civis/man/files_delete_projects.Rd | 6 civis-2.1.0/civis/man/files_get.Rd | 7 civis-2.1.0/civis/man/files_list_projects.Rd | 6 civis-2.1.0/civis/man/files_put_projects.Rd | 6 civis-2.1.0/civis/man/imports_delete_projects.Rd | 6 civis-2.1.0/civis/man/imports_get.Rd | 2 civis-2.1.0/civis/man/imports_get_files_csv.Rd | 1 civis-2.1.0/civis/man/imports_list.Rd | 6 civis-2.1.0/civis/man/imports_list_projects.Rd | 6 civis-2.1.0/civis/man/imports_patch_files_csv.Rd | 5 civis-2.1.0/civis/man/imports_post.Rd | 4 civis-2.1.0/civis/man/imports_post_files_csv.Rd | 7 civis-2.1.0/civis/man/imports_post_syncs.Rd | 6 civis-2.1.0/civis/man/imports_put.Rd | 4 civis-2.1.0/civis/man/imports_put_archive.Rd | 2 civis-2.1.0/civis/man/imports_put_files_csv.Rd | 6 civis-2.1.0/civis/man/imports_put_files_csv_archive.Rd | 1 civis-2.1.0/civis/man/imports_put_projects.Rd | 6 civis-2.1.0/civis/man/imports_put_syncs.Rd | 6 civis-2.1.0/civis/man/imports_put_syncs_archive.Rd | 3 civis-2.1.0/civis/man/jobs_delete_projects.Rd | 6 civis-2.1.0/civis/man/jobs_get.Rd | 4 civis-2.1.0/civis/man/jobs_list.Rd | 4 civis-2.1.0/civis/man/jobs_list_parents.Rd | 4 civis-2.1.0/civis/man/jobs_list_projects.Rd | 6 civis-2.1.0/civis/man/jobs_list_runs_outputs.Rd |only civis-2.1.0/civis/man/jobs_put_projects.Rd | 6 civis-2.1.0/civis/man/models_delete_projects.Rd | 6 civis-2.1.0/civis/man/models_list_projects.Rd | 6 civis-2.1.0/civis/man/models_put_projects.Rd | 6 civis-2.1.0/civis/man/notebooks_delete_projects.Rd | 6 civis-2.1.0/civis/man/notebooks_list_projects.Rd | 6 civis-2.1.0/civis/man/notebooks_put_projects.Rd | 6 civis-2.1.0/civis/man/projects_get.Rd | 9 civis-2.1.0/civis/man/projects_post.Rd | 9 civis-2.1.0/civis/man/projects_put.Rd | 9 civis-2.1.0/civis/man/projects_put_archive.Rd | 9 civis-2.1.0/civis/man/publish_rmd.Rd | 4 civis-2.1.0/civis/man/reports_delete_projects.Rd | 6 civis-2.1.0/civis/man/reports_delete_services_projects.Rd | 6 civis-2.1.0/civis/man/reports_list.Rd | 4 civis-2.1.0/civis/man/reports_list_projects.Rd | 6 civis-2.1.0/civis/man/reports_list_services_projects.Rd | 6 civis-2.1.0/civis/man/reports_put_projects.Rd | 6 civis-2.1.0/civis/man/reports_put_services_projects.Rd | 6 civis-2.1.0/civis/man/results_delete_projects.Rd | 6 civis-2.1.0/civis/man/results_delete_services_projects.Rd | 6 civis-2.1.0/civis/man/results_list.Rd | 4 civis-2.1.0/civis/man/results_list_projects.Rd | 6 civis-2.1.0/civis/man/results_list_services_projects.Rd | 6 civis-2.1.0/civis/man/results_put_projects.Rd | 6 civis-2.1.0/civis/man/results_put_services_projects.Rd | 6 civis-2.1.0/civis/man/run_template.Rd | 15 civis-2.1.0/civis/man/saml_service_providers_delete_shares_groups.Rd |only civis-2.1.0/civis/man/saml_service_providers_delete_shares_users.Rd |only civis-2.1.0/civis/man/saml_service_providers_list_shares.Rd |only civis-2.1.0/civis/man/saml_service_providers_put_shares_groups.Rd |only civis-2.1.0/civis/man/saml_service_providers_put_shares_users.Rd |only civis-2.1.0/civis/man/scripts_delete_containers_projects.Rd | 6 civis-2.1.0/civis/man/scripts_delete_custom_projects.Rd | 6 civis-2.1.0/civis/man/scripts_delete_javascript_projects.Rd | 6 civis-2.1.0/civis/man/scripts_delete_python3_projects.Rd | 6 civis-2.1.0/civis/man/scripts_delete_r_projects.Rd | 6 civis-2.1.0/civis/man/scripts_delete_sql_projects.Rd | 6 civis-2.1.0/civis/man/scripts_get_custom.Rd | 9 civis-2.1.0/civis/man/scripts_list.Rd | 4 civis-2.1.0/civis/man/scripts_list_containers_projects.Rd | 6 civis-2.1.0/civis/man/scripts_list_custom.Rd | 9 civis-2.1.0/civis/man/scripts_list_custom_projects.Rd | 6 civis-2.1.0/civis/man/scripts_list_javascript_projects.Rd | 6 civis-2.1.0/civis/man/scripts_list_python3_projects.Rd | 6 civis-2.1.0/civis/man/scripts_list_r_projects.Rd | 6 civis-2.1.0/civis/man/scripts_list_sql_projects.Rd | 6 civis-2.1.0/civis/man/scripts_patch_custom.Rd | 9 civis-2.1.0/civis/man/scripts_post_custom.Rd | 9 civis-2.1.0/civis/man/scripts_post_custom_clone.Rd | 9 civis-2.1.0/civis/man/scripts_put_containers_projects.Rd | 6 civis-2.1.0/civis/man/scripts_put_custom.Rd | 9 civis-2.1.0/civis/man/scripts_put_custom_archive.Rd | 9 civis-2.1.0/civis/man/scripts_put_custom_projects.Rd | 6 civis-2.1.0/civis/man/scripts_put_javascript_projects.Rd | 6 civis-2.1.0/civis/man/scripts_put_python3_projects.Rd | 6 civis-2.1.0/civis/man/scripts_put_r_projects.Rd | 6 civis-2.1.0/civis/man/scripts_put_sql_projects.Rd | 6 civis-2.1.0/civis/man/services_delete_projects.Rd | 6 civis-2.1.0/civis/man/services_list_projects.Rd | 6 civis-2.1.0/civis/man/services_put_projects.Rd | 6 civis-2.1.0/civis/man/storage_hosts_delete.Rd |only civis-2.1.0/civis/man/storage_hosts_delete_shares_groups.Rd |only civis-2.1.0/civis/man/storage_hosts_delete_shares_users.Rd |only civis-2.1.0/civis/man/storage_hosts_get.Rd |only civis-2.1.0/civis/man/storage_hosts_list.Rd |only civis-2.1.0/civis/man/storage_hosts_list_shares.Rd |only civis-2.1.0/civis/man/storage_hosts_patch.Rd |only civis-2.1.0/civis/man/storage_hosts_post.Rd |only civis-2.1.0/civis/man/storage_hosts_put.Rd |only civis-2.1.0/civis/man/storage_hosts_put_shares_groups.Rd |only civis-2.1.0/civis/man/storage_hosts_put_shares_users.Rd |only civis-2.1.0/civis/man/tables_delete_projects.Rd | 6 civis-2.1.0/civis/man/tables_list_projects.Rd | 6 civis-2.1.0/civis/man/tables_post_scan.Rd | 4 civis-2.1.0/civis/man/tables_put_projects.Rd | 6 civis-2.1.0/civis/man/templates_delete_scripts_projects.Rd | 6 civis-2.1.0/civis/man/templates_list_scripts_projects.Rd | 6 civis-2.1.0/civis/man/templates_put_scripts_projects.Rd | 6 civis-2.1.0/civis/man/users_get.Rd | 6 civis-2.1.0/civis/man/workflows_delete_projects.Rd | 6 civis-2.1.0/civis/man/workflows_get_executions_tasks.Rd |only civis-2.1.0/civis/man/workflows_list_projects.Rd | 6 civis-2.1.0/civis/man/workflows_put_projects.Rd | 6 civis-2.1.0/civis/tests/testthat/test_await.R | 5 civis-2.1.0/civis/tests/testthat/test_civis_future.R | 8 civis-2.1.0/civis/tests/testthat/test_client_base.R | 28 civis-2.1.0/civis/tests/testthat/test_scripts.R | 52 civis-2.1.0/civis/tools/integration_tests/smoke_test.R | 9 civis-2.1.0/civis/vignettes/civis_scripts.Rmd | 8 153 files changed, 1743 insertions(+), 1065 deletions(-)
Title: Multivariate Interpolation
Description: Contains methods for creating multivariate/multidimensional
interpolations of functions on a hypercube. If available through fftw3, the DCT-II/FFT
is used to compute coefficients for a Chebyshev interpolation.
Other interpolation methods for arbitrary Cartesian grids are also provided, a piecewise multilinear,
and the Floater-Hormann barycenter method. For scattered data polyharmonic splines with a linear term
is provided. The time-critical parts are written in C for speed. All interpolants are parallelized if
used to evaluate more than one point.
Author: Simen Gaure [aut, cre] (<https://orcid.org/0000-0001-7251-8747>)
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between chebpol versions 2.1 dated 2019-03-11 and 2.1-1 dated 2019-09-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/vignette.rds |binary configure | 3 --- configure.ac | 3 --- inst/doc/chebpol.pdf |binary inst/doc/chebusage.pdf |binary inst/doc/stalker.pdf |binary src/Makevars.in | 2 -- 9 files changed, 12 insertions(+), 20 deletions(-)
Title: An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Description: An Arsenal of 'R' functions for large-scale statistical summaries,
which are streamlined to work within the latest reporting tools in 'R' and
'RStudio' and which use formulas and versatile summary statistics for summary
tables and models. The primary functions include tableby(), a Table-1-like
summary of multiple variable types 'by' the levels of one or more categorical
variables; paired(), a Table-1-like summary of multiple variable types paired across
two time points; modelsum(), which performs simple model fits on one or more endpoints
for many variables (univariate or adjusted for covariates);
freqlist(), a powerful frequency table across many categorical variables;
comparedf(), a function for comparing data.frames; and
write2(), a function to output tables to a document.
Author: Ethan Heinzen [aut, cre],
Jason Sinnwell [aut],
Elizabeth Atkinson [aut],
Tina Gunderson [aut],
Gregory Dougherty [aut],
Patrick Votruba [ctb],
Ryan Lennon [ctb],
Andrew Hanson [ctb],
Krista Goergen [ctb],
Emily Lundt [ctb],
Brendan Broderick [ctb],
Maddie McCullough [art]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between arsenal versions 3.2.0 dated 2019-06-13 and 3.3.0 dated 2019-09-07
DESCRIPTION | 15 MD5 | 104 +++--- NAMESPACE | 6 NEWS.md | 51 +++ R/arsenal.R | 5 R/as.data.frame.modelsum.R | 43 +- R/defunct.R | 9 R/deprecated.R | 26 - R/modelsum.R | 258 ++++------------ R/modelsum.control.R | 12 R/modelsum.internal.R | 148 +++++++++ R/not.in.R | 2 R/paired.R | 8 R/summary.modelsum.R | 21 - R/summary.tableby.R | 16 R/tableby.R | 18 - R/tableby.control.R | 13 R/tableby.internal.R | 10 R/tableby.stat.tests.R | 52 ++- R/tableby.stats.R | 114 +++++-- R/write2.internal.R | 34 -- build/vignette.rds |binary inst/doc/comparedf.html | 26 - inst/doc/freqlist.html | 31 + inst/doc/labels.html | 35 +- inst/doc/modelsum.R | 5 inst/doc/modelsum.Rmd | 26 + inst/doc/modelsum.html | 516 +++++++++++++++++++------------- inst/doc/paired.html | 23 - inst/doc/tableby.Rmd | 1 inst/doc/tableby.html | 149 ++++----- inst/doc/write2.R | 3 inst/doc/write2.Rmd | 6 inst/doc/write2.html | 157 +++++---- man/arsenal-defunct.Rd | 11 man/arsenal-deprecated.Rd | 17 - man/grapes-nin-grapes.Rd | 2 man/reexports.Rd | 5 man/summary.modelsum.Rd | 9 man/tableby.control.Rd | 15 man/tableby.stats.Rd | 59 +-- man/write2.internal.Rd | 14 tests/testthat/test_formulize.R | 4 tests/testthat/test_lhs_modelsum.R | 130 +++++++- tests/testthat/test_lhs_tableby.R | 28 + tests/testthat/test_modelsum.R | 68 +++- tests/testthat/test_paired.R | 21 + tests/testthat/test_tableby.R | 240 +++++++++++++- tests/testthat/test_write2.R | 22 + tests/testthat/write2.modelsum.html.Rmd | 2 vignettes/modelsum.Rmd | 26 + vignettes/tableby.Rmd | 1 vignettes/write2.Rmd | 6 53 files changed, 1685 insertions(+), 938 deletions(-)
Title: Calculates Probability of Superiority
Description: The A() function calculates the A statistic, a nonparametric
measure of effect size for two independent groups that’s also known as
the probability of superiority (Ruscio, 2008), along with its standard
error and a confidence interval constructed using bootstrap methods
(Ruscio & Mullen, 2012). Optional arguments can be specified to
calculate variants of the A statistic developed for other research
designs (e.g., related samples, more than two independent groups or
related samples; Ruscio & Gera, 2013).
<DOI: 10.1037/1082-989X.13.1.19>.
<DOI: 10.1080/00273171.2012.658329>.
<DOI: 10.1080/00273171.2012.738184>.
Author: John Ruscio
Maintainer: John Ruscio <ruscio@tcnj.edu>
Diff between RProbSup versions 2.0 dated 2019-01-19 and 2.1 dated 2019-09-07
DESCRIPTION | 14 LICENSE | 2 MD5 | 7 R/A.R | 896 ++++++++++++++++++++++++++------------------------- man/RemoveMissing.Rd |only 5 files changed, 472 insertions(+), 447 deletions(-)
Title: Estimation in Nonprobability Sampling
Description: Different inference procedures are proposed in the literature to correct for selection bias that might be introduced with non-random selection mechanisms. A class of methods to correct for selection bias is to apply a statistical model to predict the units not in the sample (super-population modeling). Other studies use calibration or Statistical Matching (statistically match nonprobability and probability samples). To date, the more relevant methods are weighting by Propensity Score Adjustment (PSA).
The Propensity Score Adjustment method was originally developed to construct weights by estimating response probabilities and using them in Horvitz–Thompson type estimators. This method is usually used by combining a non-probability sample with a reference sample to construct propensity models for the non-probability sample. Calibration can be used in a posterior way to adding information of auxiliary variables.
Propensity scores in PSA are usually estimated using logistic regression models. Machine learning classification algorithms can be used as alternatives for logistic regression as a technique to estimate propensities.
The package 'NonProbEst' implements some of these methods and thus provides a wide options to work with data coming from a non-probabilistic sample.
Author: Luis Castro Martín <luiscastro193@gmail.com>, Ramón Ferri García <rferri@ugr.es> and María del Mar Rueda <mrueda@ugr.es>
Maintainer: Luis Castro Martín <luiscastro193@gmail.com>
Diff between NonProbEst versions 0.1.0 dated 2019-06-18 and 0.2.0 dated 2019-09-07
DESCRIPTION | 6 MD5 | 20 R/NonProbEst.R | 964 ++++++++++++++++++++++---------------- data/population.RData |only man/calib_weights.Rd | 3 man/confidence_interval.Rd | 3 man/generic_jackknife_variance.Rd |only man/matching.Rd |only man/mean_estimation.Rd | 4 man/model_assisted.Rd |only man/model_based.Rd |only man/population.Rd |only man/prop_estimation.Rd | 4 man/sampleNP.Rd | 1 14 files changed, 593 insertions(+), 412 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.18.1-10 dated 2019-06-14 and 2.19.0 dated 2019-09-07
DESCRIPTION | 8 MD5 | 12 inst/CITATION | 6 inst/doc/stanmath.Rmd | 4 inst/doc/stanmath.html | 814 +++++++----- inst/include/stan/math/prim/mat/err/is_lower_triangular.hpp | 3 vignettes/stanmath.Rmd | 4 7 files changed, 530 insertions(+), 321 deletions(-)
Title: Tools for Post-Selection Inference
Description: New tools for post-selection inference, for use with forward
stepwise regression, least angle regression, the lasso, and the many means
problem. The lasso function implements Gaussian, logistic and Cox survival
models.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor,
Joshua Loftus, Stephen Reid, Jelena Markovic
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between selectiveInference versions 1.2.4 dated 2017-10-04 and 1.2.5 dated 2019-09-07
selectiveInference-1.2.4/selectiveInference/src/selinf_init.c |only selectiveInference-1.2.4/selectiveInference/src/truncnorm.c |only selectiveInference-1.2.5/selectiveInference/DESCRIPTION | 22 selectiveInference-1.2.5/selectiveInference/MD5 | 65 selectiveInference-1.2.5/selectiveInference/NAMESPACE | 55 selectiveInference-1.2.5/selectiveInference/R/RcppExports.R |only selectiveInference-1.2.5/selectiveInference/R/funs.ROSI.R |only selectiveInference-1.2.5/selectiveInference/R/funs.ROSI.side.R |only selectiveInference-1.2.5/selectiveInference/R/funs.common.R | 16 selectiveInference-1.2.5/selectiveInference/R/funs.fixed.R | 656 +++++++--- selectiveInference-1.2.5/selectiveInference/R/funs.fixedCox.R | 26 selectiveInference-1.2.5/selectiveInference/R/funs.fixedLogit.R | 238 ++- selectiveInference-1.2.5/selectiveInference/R/funs.fs.R | 50 selectiveInference-1.2.5/selectiveInference/R/funs.inf.R | 151 +- selectiveInference-1.2.5/selectiveInference/R/funs.lar.R | 50 selectiveInference-1.2.5/selectiveInference/R/funs.randomized.R |only selectiveInference-1.2.5/selectiveInference/R/funs.randomizedMLE.R |only selectiveInference-1.2.5/selectiveInference/R/funs.sampler.R |only selectiveInference-1.2.5/selectiveInference/R/linear.tests.R |only selectiveInference-1.2.5/selectiveInference/man/ROSI.Rd |only selectiveInference-1.2.5/selectiveInference/man/TG.interval.Rd |only selectiveInference-1.2.5/selectiveInference/man/TG.limits.Rd |only selectiveInference-1.2.5/selectiveInference/man/TG.pvalue.Rd |only selectiveInference-1.2.5/selectiveInference/man/debiasingMatrix.Rd |only selectiveInference-1.2.5/selectiveInference/man/factorDesign.Rd | 4 selectiveInference-1.2.5/selectiveInference/man/fixedLassoInf.Rd | 190 +- selectiveInference-1.2.5/selectiveInference/man/fs.Rd | 4 selectiveInference-1.2.5/selectiveInference/man/groupfs.Rd | 5 selectiveInference-1.2.5/selectiveInference/man/groupfsInf.Rd | 2 selectiveInference-1.2.5/selectiveInference/man/predict.groupfs.Rd | 11 selectiveInference-1.2.5/selectiveInference/man/randomizedLasso.Rd |only selectiveInference-1.2.5/selectiveInference/man/randomizedLassoInf.Rd |only selectiveInference-1.2.5/selectiveInference/man/scaleGroups.Rd | 2 selectiveInference-1.2.5/selectiveInference/man/selectiveInference-internal.Rd | 11 selectiveInference-1.2.5/selectiveInference/src/Makevars |only selectiveInference-1.2.5/selectiveInference/src/Rcpp-debias.cpp |only selectiveInference-1.2.5/selectiveInference/src/Rcpp-matrixcomps.cpp |only selectiveInference-1.2.5/selectiveInference/src/Rcpp-randomized.cpp |only selectiveInference-1.2.5/selectiveInference/src/RcppExports.cpp |only selectiveInference-1.2.5/selectiveInference/src/debias.h |only selectiveInference-1.2.5/selectiveInference/src/matrixcomps.c | 28 selectiveInference-1.2.5/selectiveInference/src/matrixcomps.h |only selectiveInference-1.2.5/selectiveInference/src/quadratic_program.c |only selectiveInference-1.2.5/selectiveInference/src/quadratic_program_wide.c |only selectiveInference-1.2.5/selectiveInference/src/randomized_lasso.c |only selectiveInference-1.2.5/selectiveInference/src/randomized_lasso.h |only selectiveInference-1.2.5/selectiveInference/src/selective_mle.c |only selectiveInference-1.2.5/selectiveInference/src/selective_mle.h |only 48 files changed, 1083 insertions(+), 503 deletions(-)
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Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data
econometrics, as described in Baltagi (2013) Econometric Analysis of Panel Data, ISBN-13:978-1-118-67232-7,
Hsiao (2014) Analysis of Panel Data <doi:10.1017/CBO9781139839327> and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN:978-1-118-94918-4.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 2.1-0 dated 2019-07-23 and 2.2-0 dated 2019-09-07
DESCRIPTION | 13 + MD5 | 64 ++++---- NAMESPACE | 6 NEWS.md | 8 + R/est_plm.list.R | 9 + R/est_vcm.R | 30 ++- R/plm-package.R | 7 R/test_cd.R | 1 R/tool_methods.R | 1 R/tool_transformations.R | 12 + build/partial.rdb |binary build/vignette.rds |binary data/Cigar.rda |binary data/Crime.rda |binary data/EmplUK.rda |binary data/Gasoline.rda |binary data/Grunfeld.rda |binary data/Hedonic.rda |binary data/LaborSupply.rda |binary data/Males.rda |binary data/Parity.rda |binary data/Produc.rda |binary data/RiceFarms.rda |binary data/Snmesp.rda |binary data/SumHes.rda |binary data/Wages.rda |binary inst/doc/plmFunction.html | 166 +++++++++++----------- inst/doc/plmModelComponents.html | 68 ++++----- inst/doc/plmPackage.html | 294 +++++++++++++++++++-------------------- man/plm.Rd | 6 man/re-export_functions.Rd | 2 man/summary.plm.Rd | 22 ++ tests/Examples/plm-Ex.Rout.save | 16 +- 33 files changed, 403 insertions(+), 322 deletions(-)