Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county,
state). The map data frames include Alaska and Hawaii conveniently placed to the
bottom left, as they appear in most maps of the US. Convenience functions for plotting
choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.pl>
Diff between usmap versions 0.4.0 dated 2018-09-16 and 0.5.0 dated 2019-09-12
DESCRIPTION | 11 MD5 | 71 ++-- NAMESPACE | 3 NEWS.md | 20 + R/datasets.R | 56 +++ R/join-data.R | 19 - R/plot-map.R | 128 +++++--- R/transform.R |only R/usmap.R | 27 + README.md | 34 +- build/vignette.rds |binary data/citypop.rda |only data/countypop.rda |binary data/countypov.rda |binary data/earthquakes.rda |only data/statepop.rda |binary data/statepov.rda |binary inst/doc/advanced-mapping.R |only inst/doc/advanced-mapping.Rmd |only inst/doc/advanced-mapping.html |only inst/doc/introduction.R | 7 inst/doc/introduction.Rmd | 11 inst/doc/introduction.html | 384 ++++++++++++++++++++---- inst/doc/mapping.R | 60 +++ inst/doc/mapping.Rmd | 83 ++++- inst/doc/mapping.html | 508 ++++++++++++++++++++++++++------- inst/extdata/us_counties.csv | 2 inst/extdata/us_counties_centroids.csv |only inst/extdata/us_states.csv | 2 man/citypop.Rd |only man/earthquakes.Rd |only man/map_with_data.Rd | 18 - man/plot_usmap.Rd | 32 +- man/us_map.Rd | 13 man/usmap.Rd | 2 man/usmap_crs.Rd |only man/usmap_transform.Rd |only tests/testthat/test-plot.R | 77 +++-- tests/testthat/test-transform.R |only tests/testthat/test-usmap.R | 30 + vignettes/advanced-mapping.Rmd |only vignettes/introduction.Rmd | 11 vignettes/mapping.Rmd | 83 ++++- 43 files changed, 1345 insertions(+), 347 deletions(-)
Title: Functional Singular Spectrum Analysis
Description: Methods and tools for implementing functional singular spectrum analysis for functional time series
as described in Haghbin H., Najibi, S.M., Mahmoudvand R., Trinka J., Maadooliat M. (2019). Functional singular spectrum Analysis. Manuscript submitted for publication.
Author: Hossein Haghbin [aut, cre],
Seyed Morteza Najibi [aut],
Jordan Trinka [aut],
Mehdi Maadooliat [aut]
Maintainer: Hossein Haghbin <haghbinh@gmail.com>
Diff between Rfssa versions 0.0.1 dated 2019-02-11 and 1.0.0 dated 2019-09-12
Rfssa-0.0.1/Rfssa/R/Deathrate.R |only Rfssa-0.0.1/Rfssa/data/Deathrate.rda |only Rfssa-0.0.1/Rfssa/man/Deathrate.Rd |only Rfssa-0.0.1/Rfssa/man/figures |only Rfssa-0.0.1/Rfssa/man/ftsplot.Rd |only Rfssa-1.0.0/Rfssa/DESCRIPTION | 23 +-- Rfssa-1.0.0/Rfssa/MD5 | 88 +++++++----- Rfssa-1.0.0/Rfssa/NAMESPACE | 37 +++++ Rfssa-1.0.0/Rfssa/NEWS.md |only Rfssa-1.0.0/Rfssa/R/Callcenter.R | 9 - Rfssa-1.0.0/Rfssa/R/FTSclass.R |only Rfssa-1.0.0/Rfssa/R/Jambi.R |only Rfssa-1.0.0/Rfssa/R/RcppExports.R | 45 +++++- Rfssa-1.0.0/Rfssa/R/Rfssa.R | 72 ++++++---- Rfssa-1.0.0/Rfssa/R/freconstruct.r | 45 +----- Rfssa-1.0.0/Rfssa/R/fssa.r | 194 +++++++++++++-------------- Rfssa-1.0.0/Rfssa/R/fssaplot.R | 239 ++++++++++++++++++---------------- Rfssa-1.0.0/Rfssa/R/ftsarithmetic.R |only Rfssa-1.0.0/Rfssa/R/ftscor.R |only Rfssa-1.0.0/Rfssa/R/ftsplot.r | 201 ++++++++++++++++++---------- Rfssa-1.0.0/Rfssa/R/launchApp.R |only Rfssa-1.0.0/Rfssa/R/mfreconstruct.R |only Rfssa-1.0.0/Rfssa/R/mfssa.R |only Rfssa-1.0.0/Rfssa/R/shinyFSSA.R |only Rfssa-1.0.0/Rfssa/R/shinyMFSSA.R |only Rfssa-1.0.0/Rfssa/R/ufreconstruct.r |only Rfssa-1.0.0/Rfssa/R/ufssa.R |only Rfssa-1.0.0/Rfssa/R/utils.R | 135 +++++++++++++++---- Rfssa-1.0.0/Rfssa/R/wcor.r | 132 ++++++++++++++++-- Rfssa-1.0.0/Rfssa/R/wplot.R | 16 +- Rfssa-1.0.0/Rfssa/README.md | 193 +++++++++++---------------- Rfssa-1.0.0/Rfssa/data/Jambi.rda |only Rfssa-1.0.0/Rfssa/data/datalist |only Rfssa-1.0.0/Rfssa/inst |only Rfssa-1.0.0/Rfssa/man/Callcenter.Rd | 11 - Rfssa-1.0.0/Rfssa/man/Jambi.Rd |only Rfssa-1.0.0/Rfssa/man/Rfssa.Rd | 66 +++++---- Rfssa-1.0.0/Rfssa/man/cor.fts.Rd |only Rfssa-1.0.0/Rfssa/man/dot-fts.Rd |only Rfssa-1.0.0/Rfssa/man/freconstruct.Rd | 22 +-- Rfssa-1.0.0/Rfssa/man/fssa.Rd | 162 ++++++++++++----------- Rfssa-1.0.0/Rfssa/man/fts.Rd |only Rfssa-1.0.0/Rfssa/man/fwcor.Rd | 75 +++++++++- Rfssa-1.0.0/Rfssa/man/launchApp.Rd |only Rfssa-1.0.0/Rfssa/man/plot.fssa.Rd | 59 +++++--- Rfssa-1.0.0/Rfssa/man/plot.fts.Rd |only Rfssa-1.0.0/Rfssa/man/plus-.fts.Rd |only Rfssa-1.0.0/Rfssa/man/sub-.fts.Rd |only Rfssa-1.0.0/Rfssa/man/times-.fts.Rd |only Rfssa-1.0.0/Rfssa/man/wplot.Rd | 16 +- Rfssa-1.0.0/Rfssa/src/H.cpp | 2 Rfssa-1.0.0/Rfssa/src/HLinprod.cpp |only Rfssa-1.0.0/Rfssa/src/HpLinprod.cpp |only Rfssa-1.0.0/Rfssa/src/RcppExports.cpp | 113 ++++++++++++++-- Rfssa-1.0.0/Rfssa/src/Utils.cpp | 179 ++++++++++++++++++++++--- Rfssa-1.0.0/Rfssa/src/mwinprod.cpp |only Rfssa-1.0.0/Rfssa/src/winprod.cpp |only 57 files changed, 1405 insertions(+), 729 deletions(-)
Title: The Flexible Spatial Scan Statistic
Description: Functions for the detection of spatial clusters using the flexible
spatial scan statistic developed by Tango and Takahashi (2005) <doi:10.1186/1476-072X-4-11>.
This package implements a wrapper for the C routine used in the FleXScan 3.1.2
<https://sites.google.com/site/flexscansoftware/home> developed by Takahashi,
Yokoyama, and Tango.
Author: Takahiro Otani,
Kunihiko Takahashi
Maintainer: Takahiro Otani <otani@med.nagoya-u.ac.jp>
Diff between rflexscan versions 0.1 dated 2019-06-14 and 0.2.0 dated 2019-09-12
rflexscan-0.1/rflexscan/man/flexscan.Rd |only rflexscan-0.2.0/rflexscan/DESCRIPTION | 11 rflexscan-0.2.0/rflexscan/MD5 | 29 rflexscan-0.2.0/rflexscan/NAMESPACE | 5 rflexscan-0.2.0/rflexscan/NEWS.md |only rflexscan-0.2.0/rflexscan/R/RcppExports.R | 4 rflexscan-0.2.0/rflexscan/R/flexscan.R | 413 ++-- rflexscan-0.2.0/rflexscan/README.md | 5 rflexscan-0.2.0/rflexscan/man/choropleth.Rd | 18 rflexscan-0.2.0/rflexscan/man/plot.rflexscan.Rd | 31 rflexscan-0.2.0/rflexscan/man/print.rflexscan.Rd |only rflexscan-0.2.0/rflexscan/man/print.rflexscanCluster.Rd |only rflexscan-0.2.0/rflexscan/man/print.summary.rflexscan.Rd | 2 rflexscan-0.2.0/rflexscan/man/rflexscan-package.Rd | 5 rflexscan-0.2.0/rflexscan/man/rflexscan.Rd |only rflexscan-0.2.0/rflexscan/man/summary.rflexscan.Rd | 2 rflexscan-0.2.0/rflexscan/src/RcppExports.cpp | 13 rflexscan-0.2.0/rflexscan/src/flscan312.cpp | 1515 +++++---------- 18 files changed, 887 insertions(+), 1166 deletions(-)
Title: Functions to Facilitate the Simulation of Large-Scale Assessment
Data
Description: Provides functions to simulate data from large-scale educational
assessments, including background questionnaire data and cognitive item
responses that adhere to a multiple-matrix sampled design.
Author: Tyler Matta [aut],
Leslie Rutkowski [aut],
David Rutkowski [aut],
Yuan-Ling Linda Liaw [aut],
Kondwani Kajera Mughogho [ctb],
Waldir Leoncio [aut, cre]
Maintainer: Waldir Leoncio <waldir.leoncio@gmail.com>
Diff between lsasim versions 1.0.1 dated 2017-05-10 and 2.0.0 dated 2019-09-12
DESCRIPTION | 42 +- MD5 | 101 ++++-- NAMESPACE | 47 ++- R/beta_gen.R |only R/beta_gen_auxiliaryFunctions.R |only R/check_condition.R |only R/check_ignored_parameters.R |only R/cor_gen.R | 44 +- R/cov_gen.R |only R/cov_yfz_gen.R |only R/cov_yxw_gen.R |only R/cov_yxz_gen.R |only R/gen_cat_prop.R |only R/gen_variable_n.R |only R/lambda_gen.R |only R/lsasim.R | 52 +-- R/pisa2012_math_block.R | 50 +-- R/pisa2012_math_booklet.R | 48 +-- R/pisa2012_math_item.R | 38 +- R/pisa2012_q_cormat.R | 88 ++--- R/pisa2012_q_marginal.R | 82 ++--- R/proportion_gen.R | 114 +++---- R/pt_bis_conversion.R |only R/questionnaire_gen.R | 544 +++++++++++++++++++++++++----------- R/questionnaire_gen_family.R |only R/questionnaire_gen_polychoric.R |only R/run_condition_checks.R |only R/split_cat_prop.R |only man/beta_gen.Rd |only man/block_design.Rd | 91 +++--- man/booklet_design.Rd | 88 ++--- man/booklet_sample.Rd | 82 ++--- man/check_condition.Rd |only man/check_ignored_parameters.Rd |only man/cor_gen.Rd | 52 +-- man/cov_gen.Rd |only man/cov_yfz_gen.Rd |only man/cov_yxw_gen.Rd |only man/cov_yxz_gen.Rd |only man/gen_cat_prop.Rd |only man/gen_variable_n.Rd |only man/irt_gen.Rd | 56 +-- man/item_gen.Rd | 86 ++--- man/lambda_gen.Rd |only man/lsasim.Rd | 64 ++-- man/pisa2012_math_block.Rd | 70 ++-- man/pisa2012_math_booklet.Rd | 66 ++-- man/pisa2012_math_item.Rd | 56 +-- man/pisa2012_q_cormat.Rd | 112 +++---- man/pisa2012_q_marginal.Rd | 110 +++---- man/proportion_gen.Rd | 64 ++-- man/pt_bis_conversion.Rd |only man/questionnaire_gen.Rd | 291 +++++++++++++++---- man/questionnaire_gen_family.Rd |only man/questionnaire_gen_polychoric.Rd |only man/response_gen.Rd | 124 ++++---- man/run_condition_checks.Rd |only man/split_cat_prop.Rd |only tests |only 59 files changed, 1572 insertions(+), 1090 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE), measurement models are typically multivariate normal factor models.
Using the original ctsem formulation based on OpenMx, described in the JSS paper
"Continuous Time Structural Equation Modeling with R Package ctsem", with updated version
as CRAN vignette <https://cran.r-project.org/web/packages/ctsem/vignettes/ctsem.pdf> ,
linear mixed effects SDE's estimated via maximum likelihood and optimization are possible.
Using the Stan based formulation, described in <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf> ,
nonlinearity (state dependent parameters) and random effects on all parameters
are possible, using either optimization (with optional importance sampling) or
Stan's Hamiltonian Monte Carlo sampling. Priors may be used. For the conceptual
overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 3.0.3 dated 2019-09-11 and 3.0.4 dated 2019-09-12
DESCRIPTION | 8 +-- MD5 | 26 ++++++------ NEWS | 6 +- R/ctJacobian.R | 2 R/ctKalman.R | 1 R/ctModel.R | 78 ++++++++++++++++++++++++++++++++++--- R/ctStanFit.R | 2 R/ctStanKalman.R | 2 R/ctStanModelWriter.R | 8 +-- R/stanoptimis.R | 10 +++- R/summary.ctStanFit.R | 34 +++++++--------- inst/doc/ctsem.pdf |binary man/ctModel.Rd | 14 +++--- man/standatact_specificsubjects.Rd | 2 14 files changed, 133 insertions(+), 60 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.7 dated 2019-07-12 and 1.5.8 dated 2019-09-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Effectsize.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.0.9 dated 2019-08-27 and 2.1.0 dated 2019-09-12
DESCRIPTION | 8 +-- MD5 | 12 ++-- R/Biplot.R | 123 +++++++++++++++++++++++++++++++++++++++++++------ R/GrandTour.R | 2 man/Biplot.Rd | 35 +++++++++---- man/GrandTour.Rd | 4 - man/MVar.pt-package.Rd | 4 - 7 files changed, 148 insertions(+), 40 deletions(-)
Title: Multivariate Analysis
Description: Package for multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.0.9 dated 2019-08-28 and 2.1.0 dated 2019-09-12
DESCRIPTION | 8 +- MD5 | 12 +-- R/Biplot_English.R | 143 +++++++++++++++++++++++++++++++++++++++-------- R/GrandTour_English.R | 2 man/Biplot_English.Rd | 39 ++++++++---- man/GrandTour_English.Rd | 2 man/MVar-package.Rd | 4 - 7 files changed, 160 insertions(+), 50 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.3.1 dated 2019-06-13 and 0.3.4 dated 2019-09-12
DESCRIPTION | 12 MD5 | 28 NEWS | 5 R/autoplot-calibration-spct.R | 8 R/autoplot-cps-spct.r | 8 R/autoplot-filter-spct.r | 8 R/autoplot-raw-spct.r | 8 R/ggplot-methods.R | 4 README.md | 108 +- build/vignette.rds |binary inst/doc/userguide1-grammar.html | 1199 ++++++++++++++---------------- inst/doc/userguide2-autoplot-methods.html | 106 +- man/figures/README-example0-1.png |binary man/figures/README-example1-1.png |binary man/figures/README-example2-1.png |binary 15 files changed, 769 insertions(+), 725 deletions(-)
Title: Quantifying Performance of a Binary Classifier Through Weight of
Evidence
Description: The distributions of the weight of evidence (log Bayes factor) favouring case over noncase status in a test dataset (or test folds generated by cross-validation) can be used to quantify the performance of a diagnostic test (McKeigue (2019), <doi:10.1177/0962280218776989>). The package can be used with any test dataset on which you have observed case-control status and have computed prior and posterior probabilities of case status using a model learned on a training dataset. To quantify how the predictor will behave as a risk stratifier, the quantiles of the distributions of weight of evidence in cases and controls can be calculated and plotted.
Author: Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>),
Marco Colombo [ctb, cre] (<https://orcid.org/0000-0001-6672-0623>)
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between wevid versions 0.6.1 dated 2019-05-13 and 0.6.2 dated 2019-09-12
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- R/wdists.R | 42 +++++++++++++++++++++++++++++------------- R/wevid.R | 6 +++--- inst/CITATION | 10 +++++++--- man/wevid-package.Rd | 4 ++-- 6 files changed, 52 insertions(+), 31 deletions(-)
Title: Scale Invariant Probabilistic Neural Networks
Description: Scale invariant version of the original PNN proposed by Specht (1990) <doi:10.1016/0893-6080(90)90049-q> with the added functionality of allowing for smoothing along multiple dimensions while accounting for covariances within the data set. It is written in the R statistical programming language. Given a data set with categorical variables, we use this algorithm to estimate the probabilities of a new observation vector belonging to a specific category. This type of neural network provides the benefits of fast training time relative to backpropagation and statistical generalization with only a small set of known observations.
Author: Romin Ebrahimi
Maintainer: Romin Ebrahimi <romin.ebrahimi@utexas.edu>
Diff between spnn versions 1.1 dated 2018-03-20 and 1.2 dated 2019-09-12
spnn-1.1/spnn/R/pnn.guess.R |only spnn-1.1/spnn/R/pnn.learn.R |only spnn-1.1/spnn/data |only spnn-1.1/spnn/man/norms.Rd |only spnn-1.1/spnn/man/pnn.guess.Rd |only spnn-1.1/spnn/man/pnn.learn.Rd |only spnn-1.2/spnn/DESCRIPTION | 15 ++++---- spnn-1.2/spnn/MD5 | 30 ++++++++++------ spnn-1.2/spnn/NAMESPACE | 6 ++- spnn-1.2/spnn/NEWS |only spnn-1.2/spnn/R/RcppExports.R |only spnn-1.2/spnn/R/cspnn.learn.R |only spnn-1.2/spnn/R/cspnn.predict.R |only spnn-1.2/spnn/R/spnn-internal.R | 66 +++---------------------------------- spnn-1.2/spnn/R/spnn.learn.R |only spnn-1.2/spnn/R/spnn.predict.R |only spnn-1.2/spnn/build/partial.rdb |binary spnn-1.2/spnn/man/cspnn.learn.Rd |only spnn-1.2/spnn/man/cspnn.predict.Rd |only spnn-1.2/spnn/man/spnn-package.Rd | 54 +++++++++++++++++++++++------- spnn-1.2/spnn/man/spnn.learn.Rd |only spnn-1.2/spnn/man/spnn.predict.Rd |only spnn-1.2/spnn/src |only 23 files changed, 79 insertions(+), 92 deletions(-)
Title: Tools for Crowdsourcing Citizen Science in Agriculture
Description: Toolkit for the 'ClimMob' platform in R. 'ClimMob' is an open source software for crowdsourcing citizen science in agriculture <https://climmob.net/climmob3/>. Developed by van Etten et al. (2019) <doi:10.1017/S0014479716000739>, it turns the research paradigm on its head; instead of a few researchers designing complicated trials to compare several technologies in search of the best solutions, it enables many farmers to carry out reasonably simple experiments that taken together can offer even more information. 'ClimMobTools' enables project managers to deep explore and analyse their 'ClimMob' data in R.
Author: Kaue de Sousa [aut, cre] (<https://orcid.org/0000-0002-7571-7845>),
Jacob van Etten [aut, ctb] (<https://orcid.org/0000-0001-7554-2558>),
Sam Dumble [aut, ctb],
Nicolas Greliche [aut, ctb],
Brandon Madriz [aut, ctb],
Carlos Quiros [aut, ctb]
Maintainer: Kaue de Sousa <kaue.desousa@inn.no>
Diff between ClimMobTools versions 0.2-6 dated 2019-08-07 and 0.2-7 dated 2019-09-12
DESCRIPTION | 12 +++++++----- MD5 | 16 ++++++++-------- NEWS.md | 44 +++++++++++++++++++------------------------- R/build_rankings.R | 29 +++++++++++++++-------------- inst/doc/Overview.R | 3 +++ inst/doc/Overview.Rmd | 9 +++++++-- inst/doc/Overview.html | 2 ++ man/build_rankings.Rd | 22 ++++++++++++---------- vignettes/Overview.Rmd | 9 +++++++-- 9 files changed, 80 insertions(+), 66 deletions(-)
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo
standard errors of commonly used summary statistics. This package is modelled
on the 'simsum' user-written command in 'Stata' (White I.R., 2010
<http://www.stata-journal.com/article.html?article=st0200>), further extending
it with additional functionality.
Author: Alessandro Gasparini [aut, cre]
(<https://orcid.org/0000-0002-8319-7624>),
Ian R. White [aut]
Maintainer: Alessandro Gasparini <ag475@leicester.ac.uk>
Diff between rsimsum versions 0.6.0 dated 2019-07-15 and 0.6.1 dated 2019-09-12
DESCRIPTION | 11 - MD5 | 26 +-- NEWS.md | 8 + R/plot-types.R | 4 R/summary.simsum.R | 4 R/utils.R | 2 README.md | 17 +- build/partial.rdb |binary inst/doc/A-introduction.html | 286 ++++++++++++++++----------------------- inst/doc/B-relhaz.html | 120 +++++++--------- inst/doc/C-plotting.html | 122 +++++++--------- inst/doc/D-nlp.html | 4 inst/doc/E-rsimsumtidyverse.html | 4 man/summary.simsum.Rd | 4 14 files changed, 281 insertions(+), 331 deletions(-)
Title: Validation of Local and Remote Data Tables
Description: Validate data in data frames,
'tibble' objects, in 'CSV' and 'TSV' files,
and in database tables ('PostgreSQL' and 'MySQL').
Validation pipelines can be made using
easily-readable, consecutive validation steps
and such pipelines allow for switching of the
data table context. Upon execution of the
validation plan, several reporting options are
available. User-defined thresholds for failure
rates allow for the determination of appropriate
reporting actions.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>)
Maintainer: Richard Iannone <riannone@me.com>
Diff between pointblank versions 0.2.0 dated 2018-05-02 and 0.2.1 dated 2019-09-12
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Title: Clustering and Classification using Model-Based Mixture Models
Description: Algorithms and methods for model-based clustering and classification.
It supports various types of data: continuous, categorical and counting
and can handle mixed data of these types. It can fit Gaussian (with diagonal
covariance structure), gamma, categorical and Poisson models. The algorithms
also support missing values. This package can be used as an independent
alternative to the (not free) 'mixtcomp' software available at
<https://massiccc.lille.inria.fr/>.
Author: Serge Iovleff [aut, cre],
Parmeet Bathia [ctb]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>
Diff between MixAll versions 1.4.2 dated 2018-04-08 and 1.5.1 dated 2019-09-12
MixAll-1.4.2/MixAll/inst/projects/Clustering/include/CategoricalModels/STK_CategoricalParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/DiagGaussianModels/STK_DiagGaussianParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/HDGaussianModels/STK_HDGaussianParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/HDGaussianModels/STK_HDGaussian_ajk_bk_qk_d.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/KernelModels/STK_KernelParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/PoissonModels/STK_PoissonParametersHandler.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/include/STK_MixtureComposerFacade.h |only MixAll-1.4.2/MixAll/inst/projects/Clustering/src/STK_CategoricalParametersHandler.cpp |only MixAll-1.4.2/MixAll/inst/projects/Clustering/src/STK_DiagGaussianParametersHandler.cpp |only MixAll-1.4.2/MixAll/inst/projects/Clustering/src/STK_GammaParametersHandler.cpp |only MixAll-1.4.2/MixAll/inst/projects/Clustering/src/STK_KernelParametersHandler.cpp |only MixAll-1.4.2/MixAll/inst/projects/Clustering/src/STK_PoissonParametersHandler.cpp |only MixAll-1.5.1/MixAll/DESCRIPTION | 18 MixAll-1.5.1/MixAll/MD5 | 352 ++--- MixAll-1.5.1/MixAll/R/ClusterCategorical.R | 23 MixAll-1.5.1/MixAll/R/ClusterDiagGaussian.R | 2 MixAll-1.5.1/MixAll/R/ClusterMixedData.R | 2 MixAll-1.5.1/MixAll/R/ClusterPoisson.R | 9 MixAll-1.5.1/MixAll/R/ClusterPredict.R | 70 - MixAll-1.5.1/MixAll/R/ClusterStrategy.R | 36 MixAll-1.5.1/MixAll/R/IClusterModel.R | 28 MixAll-1.5.1/MixAll/R/IClusterPredict.R | 29 MixAll-1.5.1/MixAll/R/Learners.R | 6 MixAll-1.5.1/MixAll/R/MixAll.R | 42 MixAll-1.5.1/MixAll/R/kmmMixedData.R | 26 MixAll-1.5.1/MixAll/build/vignette.rds |binary MixAll-1.5.1/MixAll/data/birds.rda |binary 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MixAll-1.5.1/MixAll/inst/projects/Clustering/include/DiagGaussianModels/STK_DiagGaussian_sjsk.h |only MixAll-1.5.1/MixAll/inst/projects/Clustering/include/DiagGaussianModels/STK_DiagGaussian_sk.h | 18 MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaBase.h | 1 MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaBridge.h | 89 - MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaMixtureManager.h | 168 ++ MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaParameters.h | 233 +++ MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_a_bjk.h | 22 MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_a_bk.h | 16 MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_aj_bjk.h | 14 MixAll-1.5.1/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_aj_bk.h | 18 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MixAll-1.5.1/MixAll/inst/projects/Clustering/src/STK_SimpleStrategy.cpp | 2 MixAll-1.5.1/MixAll/inst/projects/Clustering/src/STK_XemStrategy.cpp | 2 MixAll-1.5.1/MixAll/inst/projects/Clustering/src/makefile | 2 MixAll-1.5.1/MixAll/inst/projects/Clustering/src/makevars.local | 2 MixAll-1.5.1/MixAll/inst/projects/MixAll/ClusterLauncher.h | 4 MixAll-1.5.1/MixAll/inst/projects/MixAll/IClusterPredictor.h | 11 MixAll-1.5.1/MixAll/inst/projects/MixAll/ILauncher.h | 22 MixAll-1.5.1/MixAll/inst/projects/MixAll/ILauncherBase.h | 144 +- MixAll-1.5.1/MixAll/inst/projects/MixAll/KmmLauncher.h | 17 MixAll-1.5.1/MixAll/inst/projects/MixAll/LearnLauncher.h | 12 MixAll-1.5.1/MixAll/inst/projects/MixAll/MixAll_Util.h | 2 MixAll-1.5.1/MixAll/inst/projects/MixAll/RDataHandler.h | 13 MixAll-1.5.1/MixAll/man/ClusterModels-class.Rd | 4 MixAll-1.5.1/MixAll/man/IClusterPredict-class.Rd | 2 MixAll-1.5.1/MixAll/man/MixAll-package.Rd | 38 MixAll-1.5.1/MixAll/man/clusterCategorical.Rd | 7 MixAll-1.5.1/MixAll/man/clusterCategoricalNames.Rd | 2 MixAll-1.5.1/MixAll/man/clusterDiagGaussianNames.Rd | 2 MixAll-1.5.1/MixAll/man/clusterGammaNames.Rd | 2 MixAll-1.5.1/MixAll/man/clusterInit.Rd | 4 MixAll-1.5.1/MixAll/man/clusterMixedData.Rd | 4 MixAll-1.5.1/MixAll/man/clusterPoisson.Rd | 6 MixAll-1.5.1/MixAll/man/clusterPoissonNames.Rd | 2 MixAll-1.5.1/MixAll/man/clusterStrategy.Rd | 36 MixAll-1.5.1/MixAll/man/extract-methods.Rd | 5 MixAll-1.5.1/MixAll/man/initialize-methods.Rd | 55 MixAll-1.5.1/MixAll/man/kmm.Rd | 4 MixAll-1.5.1/MixAll/man/kmmMixedData.Rd | 10 MixAll-1.5.1/MixAll/man/kmmNames.Rd | 4 MixAll-1.5.1/MixAll/man/learners.Rd | 6 MixAll-1.5.1/MixAll/man/missingValues-methods.Rd | 1 MixAll-1.5.1/MixAll/man/print-methods.Rd | 21 MixAll-1.5.1/MixAll/man/show-methods.Rd | 8 MixAll-1.5.1/MixAll/man/summary-methods.Rd | 12 MixAll-1.5.1/MixAll/src/ClusterFacade.cpp | 8 MixAll-1.5.1/MixAll/src/ClusterLauncher.cpp | 39 MixAll-1.5.1/MixAll/src/ClusterPredictor.cpp | 53 MixAll-1.5.1/MixAll/src/ClusterPredictorMixedData.cpp | 80 - MixAll-1.5.1/MixAll/src/IClusterPredictor.cpp | 104 + MixAll-1.5.1/MixAll/src/ILauncher.cpp | 45 MixAll-1.5.1/MixAll/src/ILauncherBase.cpp | 291 +++- MixAll-1.5.1/MixAll/src/KmmLauncher.cpp | 140 +- MixAll-1.5.1/MixAll/src/LearnLauncher.cpp | 40 MixAll-1.5.1/MixAll/src/Makevars | 11 MixAll-1.5.1/MixAll/src/RDataHandler.cpp | 4 MixAll-1.5.1/MixAll/src/clusterMixture.cpp | 10 MixAll-1.5.1/MixAll/src/computeKernel.cpp | 2 MixAll-1.5.1/MixAll/src/createKernel.cpp | 2 MixAll-1.5.1/MixAll/src/init_MixAll.c | 18 MixAll-1.5.1/MixAll/src/learnMixture.cpp | 6 MixAll-1.5.1/MixAll/tests/simulNonLinear.R | 38 MixAll-1.5.1/MixAll/tests/testPredict.R | 84 - MixAll-1.5.1/MixAll/vignettes/Introduction-Mixtures.Rnw | 17 MixAll-1.5.1/MixAll/vignettes/Learning-Mixtures.Rnw | 136 +- MixAll-1.5.1/MixAll/vignettes/MixAll.bib | 18 184 files changed, 4699 insertions(+), 2363 deletions(-)
Title: Storage Management in 'Azure'
Description: Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/services/storage>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureStor versions 2.1.0 dated 2019-08-03 and 2.1.1 dated 2019-09-12
DESCRIPTION | 10 ++++----- MD5 | 14 ++++++------- NEWS.md | 5 ++++ R/adls_client_funcs.R | 52 ++++++++++++++++++++++---------------------------- R/blob_client_funcs.R | 21 +++++--------------- R/file_client_funcs.R | 46 ++++++++++++++++++-------------------------- R/storage_utils.R | 19 ++++++++++++++++++ README.md | 3 +- 8 files changed, 86 insertions(+), 84 deletions(-)
Title: 'ggplot2' Extension for Seasonal and Trading Day Adjustment with
'RJDemetra'
Description: Provides 'ggplot2' functions to return the results of seasonal and trading day adjustment
made by 'RJDemetra'. 'RJDemetra' is an 'R' interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>),
the seasonal adjustment software officially recommended to the members of the European Statistical System and
the European System of Central Banks.
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between ggdemetra versions 0.2.0 dated 2019-06-19 and 0.2.1 dated 2019-09-12
ggdemetra-0.2.0/ggdemetra/man/figures/README-unnamed-chunk-7-1.png |only ggdemetra-0.2.1/ggdemetra/DESCRIPTION | 6 ggdemetra-0.2.1/ggdemetra/MD5 | 49 ggdemetra-0.2.1/ggdemetra/NAMESPACE | 36 ggdemetra-0.2.1/ggdemetra/NEWS.md | 14 ggdemetra-0.2.1/ggdemetra/R/geom_arima.R | 186 +- ggdemetra-0.2.1/ggdemetra/R/geom_diagnostics.R | 328 +-- ggdemetra-0.2.1/ggdemetra/R/geom_outliers.R | 336 +-- ggdemetra-0.2.1/ggdemetra/R/geom_sa.R | 264 +-- ggdemetra-0.2.1/ggdemetra/R/ipi_c_eu.R | 136 - ggdemetra-0.2.1/ggdemetra/R/seasonal_adjustment.R | 262 +- ggdemetra-0.2.1/ggdemetra/README.md | 280 +-- ggdemetra-0.2.1/ggdemetra/build/vignette.rds |binary ggdemetra-0.2.1/ggdemetra/inst/doc/ggdemetra.R | 178 +- ggdemetra-0.2.1/ggdemetra/inst/doc/ggdemetra.Rmd | 318 +-- ggdemetra-0.2.1/ggdemetra/inst/doc/ggdemetra.html | 880 +++++----- ggdemetra-0.2.1/ggdemetra/man/figures/README-unnamed-chunk-3-1.png |binary ggdemetra-0.2.1/ggdemetra/man/figures/README-unnamed-chunk-4-1.png |binary ggdemetra-0.2.1/ggdemetra/man/figures/README-unnamed-chunk-5-1.png |binary ggdemetra-0.2.1/ggdemetra/man/figures/README-unnamed-chunk-6-1.png |binary ggdemetra-0.2.1/ggdemetra/man/geom_arima.Rd | 150 - ggdemetra-0.2.1/ggdemetra/man/geom_diagnostics.Rd | 192 +- ggdemetra-0.2.1/ggdemetra/man/geom_outlier.Rd | 218 +- ggdemetra-0.2.1/ggdemetra/man/geom_sa.Rd | 160 - ggdemetra-0.2.1/ggdemetra/man/ipi_c_eu.Rd | 124 - ggdemetra-0.2.1/ggdemetra/vignettes/ggdemetra.Rmd | 318 +-- 26 files changed, 2224 insertions(+), 2211 deletions(-)
More information about competitiontoolbox at CRAN
Permanent link
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2018) <doi:10.2139/ssrn.3067734>.
Author: Samuel Borms [aut, cre],
David Ardia [aut],
Keven Bluteau [aut],
Kris Boudt [aut],
Jeroen Van Pelt [ctb],
Andres Algaba [ctb]
Maintainer: Samuel Borms <samuel.borms@unine.ch>
Diff between sentometrics versions 0.5.6 dated 2018-12-18 and 0.7.0 dated 2019-09-12
sentometrics-0.5.6/sentometrics/man/diff.sentomeasures.Rd |only sentometrics-0.5.6/sentometrics/man/get_measures.Rd |only sentometrics-0.5.6/sentometrics/man/measures_delete.Rd |only sentometrics-0.5.6/sentometrics/man/measures_merge.Rd |only sentometrics-0.5.6/sentometrics/man/measures_select.Rd |only sentometrics-0.5.6/sentometrics/man/measures_subset.Rd |only sentometrics-0.5.6/sentometrics/man/nobs.sentomeasures.Rd |only sentometrics-0.5.6/sentometrics/man/plot.sentomeasures.Rd |only sentometrics-0.5.6/sentometrics/man/plot.sentomodeliter.Rd |only sentometrics-0.5.6/sentometrics/man/predict.sentomodel.Rd |only sentometrics-0.5.6/sentometrics/man/scale.sentomeasures.Rd |only sentometrics-0.5.6/sentometrics/man/sentiment_bind.Rd |only sentometrics-0.5.6/sentometrics/man/to_sentiment.Rd |only sentometrics-0.5.6/sentometrics/man/to_sentocorpus.Rd |only sentometrics-0.7.0/sentometrics/DESCRIPTION | 27 sentometrics-0.7.0/sentometrics/MD5 | 152 +- sentometrics-0.7.0/sentometrics/NAMESPACE | 60 - sentometrics-0.7.0/sentometrics/NEWS.md | 17 sentometrics-0.7.0/sentometrics/R/RcppExports.R | 8 sentometrics-0.7.0/sentometrics/R/attribution.R | 82 - sentometrics-0.7.0/sentometrics/R/deprecated.R | 284 ++--- sentometrics-0.7.0/sentometrics/R/sentiment_engines.R | 536 +++++++--- sentometrics-0.7.0/sentometrics/R/sentoapp.R |only sentometrics-0.7.0/sentometrics/R/sentocorpus.R | 346 +++++- sentometrics-0.7.0/sentometrics/R/sentolexicons.R | 35 sentometrics-0.7.0/sentometrics/R/sentomeasures_main.R | 365 ++++-- sentometrics-0.7.0/sentometrics/R/sentomeasures_measures_xyz.R | 459 +------- sentometrics-0.7.0/sentometrics/R/sentomeasures_methods.R | 466 +++++++- sentometrics-0.7.0/sentometrics/R/sentometrics.R | 20 sentometrics-0.7.0/sentometrics/R/sentomodel.R | 204 +-- sentometrics-0.7.0/sentometrics/R/utils.R | 84 - sentometrics-0.7.0/sentometrics/R/zzz.R | 4 sentometrics-0.7.0/sentometrics/README.md | 10 sentometrics-0.7.0/sentometrics/inst/extdata |only sentometrics-0.7.0/sentometrics/inst/shiny |only sentometrics-0.7.0/sentometrics/man/add_features.Rd | 12 sentometrics-0.7.0/sentometrics/man/aggregate.sentiment.Rd | 39 sentometrics-0.7.0/sentometrics/man/aggregate.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/as.data.table.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/as.sentiment.Rd |only sentometrics-0.7.0/sentometrics/man/as.sento_corpus.Rd |only sentometrics-0.7.0/sentometrics/man/attributions.Rd | 12 sentometrics-0.7.0/sentometrics/man/compute_sentiment.Rd | 112 +- sentometrics-0.7.0/sentometrics/man/corpus_summarize.Rd |only sentometrics-0.7.0/sentometrics/man/ctr_agg.Rd | 33 sentometrics-0.7.0/sentometrics/man/ctr_model.Rd | 4 sentometrics-0.7.0/sentometrics/man/data-defunct.Rd | 2 sentometrics-0.7.0/sentometrics/man/diff.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/figures |only sentometrics-0.7.0/sentometrics/man/get_dates.Rd | 6 sentometrics-0.7.0/sentometrics/man/get_dimensions.Rd | 6 sentometrics-0.7.0/sentometrics/man/get_loss_data.Rd | 8 sentometrics-0.7.0/sentometrics/man/measures_fill.Rd | 32 sentometrics-0.7.0/sentometrics/man/measures_global.Rd | 26 sentometrics-0.7.0/sentometrics/man/measures_update.Rd |only sentometrics-0.7.0/sentometrics/man/merge.sentiment.Rd |only sentometrics-0.7.0/sentometrics/man/nmeasures.Rd | 6 sentometrics-0.7.0/sentometrics/man/nobs.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/peakdates.Rd | 16 sentometrics-0.7.0/sentometrics/man/plot.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/plot.sento_modelIter.Rd |only sentometrics-0.7.0/sentometrics/man/predict.sento_model.Rd |only sentometrics-0.7.0/sentometrics/man/scale.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/sento_app.Rd |only sentometrics-0.7.0/sentometrics/man/sento_corpus.Rd | 42 sentometrics-0.7.0/sentometrics/man/sento_lexicons.Rd | 14 sentometrics-0.7.0/sentometrics/man/sento_measures.Rd | 32 sentometrics-0.7.0/sentometrics/man/sento_model.Rd | 38 sentometrics-0.7.0/sentometrics/man/sentometrics-defunct.Rd | 97 + sentometrics-0.7.0/sentometrics/man/sentometrics-deprecated.Rd | 133 -- sentometrics-0.7.0/sentometrics/man/sentometrics-package.Rd | 26 sentometrics-0.7.0/sentometrics/man/subset.sento_measures.Rd |only sentometrics-0.7.0/sentometrics/man/usnews.Rd | 2 sentometrics-0.7.0/sentometrics/src/RcppExports.cpp | 33 sentometrics-0.7.0/sentometrics/src/SentimentScorerBigrams.h | 55 - sentometrics-0.7.0/sentometrics/src/SentimentScorerClusters.h | 72 - sentometrics-0.7.0/sentometrics/src/SentimentScorerOnegrams.h | 49 sentometrics-0.7.0/sentometrics/src/SentimentScorerSentences.h |only sentometrics-0.7.0/sentometrics/src/compute_sentiment_onegrams.cpp | 17 sentometrics-0.7.0/sentometrics/src/compute_sentiment_sentences.cpp |only sentometrics-0.7.0/sentometrics/src/compute_sentiment_valence.cpp | 12 sentometrics-0.7.0/sentometrics/src/make_frequency_maps.cpp |only sentometrics-0.7.0/sentometrics/src/utils.h | 213 +++ sentometrics-0.7.0/sentometrics/src/utils_sentences.h |only sentometrics-0.7.0/sentometrics/tests/testthat/test_aggregation.R | 25 sentometrics-0.7.0/sentometrics/tests/testthat/test_attribution.R | 8 sentometrics-0.7.0/sentometrics/tests/testthat/test_corpus_building.R | 32 sentometrics-0.7.0/sentometrics/tests/testthat/test_measures_manipulation.R | 56 - sentometrics-0.7.0/sentometrics/tests/testthat/test_methods_sentomeasures.R | 9 sentometrics-0.7.0/sentometrics/tests/testthat/test_model_specification.R | 34 sentometrics-0.7.0/sentometrics/tests/testthat/test_sentiment_computation.R | 101 + 91 files changed, 2820 insertions(+), 1753 deletions(-)
Title: Combine Output of Statistical Tests
Description: Produce a file containing the output of statistical tests
that can be shared or used to report statistics in scientific papers.
Author: Willem Sleegers
Maintainer: Willem Sleegers <w.sleegers@me.com>
Diff between tidystats versions 0.3 dated 2019-01-02 and 0.4 dated 2019-09-12
tidystats |only 1 file changed
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.2.6 dated 2019-08-09 and 0.2.7 dated 2019-09-12
tidytree-0.2.6/tidytree/README.md |only tidytree-0.2.7/tidytree/DESCRIPTION | 10 +++++----- tidytree-0.2.7/tidytree/MD5 | 11 +++++------ tidytree-0.2.7/tidytree/NEWS.md | 4 ++++ tidytree-0.2.7/tidytree/R/ancestor.R | 14 ++++++++++---- tidytree-0.2.7/tidytree/R/groupOTU.R | 2 +- tidytree-0.2.7/tidytree/inst/doc/tidytree.html | 4 ++-- 7 files changed, 27 insertions(+), 18 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Use the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> in constructing fixed and adaptive tests. Supports the following
mixed-integer programming (MIP) solver packages: 'Rsymphony', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package
is not available from CRAN; see <https://www.gurobi.com/downloads>. See vignette for installing 'Rsymphony' package
on Mac systems.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>)
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 0.2.3 dated 2019-08-28 and 0.2.5 dated 2019-09-12
DESCRIPTION | 22 MD5 | 283 - NAMESPACE | 198 NEWS.md | 45 R/ATA_class.R | 348 - R/ATA_functions.R | 545 +- R/RcppExports.R | 992 ++-- R/datasets.R | 308 - R/import.R | 96 R/item_class.R | 812 +-- R/item_functions.R | 2886 +++++++------- R/loading_functions.R | 1906 ++++----- R/runshiny.R | 108 R/shadow_class.R | 1149 ++--- R/shadow_functions.R | 7335 ++++++++++++++++++------------------ R/solver_functions.R | 38 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 242 - inst/doc/constraints.R | 252 - inst/doc/constraints.Rmd | 505 +- inst/doc/constraints.html | 2356 +++++------ inst/doc/rsymphony.Rmd | 254 - inst/doc/rsymphony.html | 752 ++- inst/shiny/app.R | 1609 +++---- man/ATA-methods.Rd | 106 man/OAT.Rd | 44 man/RE.Rd | 32 man/RMSE.Rd | 36 man/STA.Rd | 111 man/Shadow-methods.Rd | 106 man/addTrans.Rd | 32 man/array_info_1pl.Rd | 42 man/array_info_2pl.Rd | 58 man/array_info_3pl.Rd | 50 man/array_info_gpc.Rd | 46 man/array_info_gr.Rd | 46 man/array_info_pc.Rd | 46 man/array_p_1pl.Rd | 42 man/array_p_2pl.Rd | 58 man/array_p_3pl.Rd | 50 man/array_p_gpc.Rd | 46 man/array_p_gr.Rd | 46 man/array_p_pc.Rd | 46 man/buildConstraints.Rd | 74 man/calcDerivative-methods.Rd | 184 man/calcDerivative2-methods.Rd | 184 man/calcEscore-methods.Rd | 184 man/calcFisher-methods.Rd | 210 - man/calcHessian-methods.Rd | 204 - man/calcJacobian-methods.Rd | 204 - man/calcLocation-methods.Rd | 196 man/calcProb-methods.Rd | 184 man/calcRP.Rd | 46 man/calc_MI_FB.Rd | 40 man/calc_info.Rd | 40 man/calc_info_EB.Rd | 40 man/calc_info_FB.Rd | 44 man/calc_info_matrix.Rd | 40 man/calc_likelihood.Rd | 44 man/calc_likelihood_function.Rd | 44 man/calc_log_likelihood.Rd | 52 man/calc_log_likelihood_function.Rd | 54 man/calc_posterior.Rd | 52 man/calc_posterior_function.Rd | 54 man/calc_posterior_single.Rd | 52 man/checkConstraints.Rd | 36 man/constraint-class.Rd | 50 man/createShadowTestConfig.Rd | 239 - man/createStaticTestConfig.Rd | 125 man/dataset_fatigue.Rd | 128 man/dataset_reading.Rd | 118 man/dataset_science.Rd | 100 man/eap-methods.Rd | 52 man/eaparray-methods.Rd | 56 man/extract-methods.Rd | 54 man/find_segment.Rd | 32 man/info_1pl.Rd | 42 man/info_2pl.Rd | 58 man/info_3pl.Rd | 50 man/info_gpc.Rd | 46 man/info_gr.Rd | 46 man/info_pc.Rd | 46 man/iparPosteriorSample.Rd | 40 man/item_1PL-class.Rd | 46 man/item_2PL-class.Rd | 62 man/item_3PL-class.Rd | 54 man/item_GPC-class.Rd | 54 man/item_GR-class.Rd | 54 man/item_PC-class.Rd | 54 man/item_pool-class.Rd | 62 man/item_pool.operators.Rd | 104 man/lnHyperPars.Rd | 40 man/loadConstraints.Rd | 96 man/loadItemAttrib.Rd | 70 man/loadItemPool.Rd | 64 man/loadStAttrib.Rd | 92 man/logitHyperPars.Rd | 40 man/makeItemPoolCluster.Rd | 40 man/makeTest-methods.Rd | 58 man/makeTestCluster-methods.Rd | 54 man/mle-methods.Rd | 86 man/mlearray-methods.Rd | 84 man/output_Shadow-class.Rd | 106 man/p_1pl.Rd | 42 man/p_2pl.Rd | 58 man/p_3pl.Rd | 50 man/p_gpc.Rd | 46 man/p_gr.Rd | 46 man/p_pc.Rd | 46 man/plotCAT-methods.Rd | 100 man/plotEligibilityStats.Rd | 68 man/plotExposure-methods.Rd | 83 man/plotExposureRateBySegment.Rd | 54 man/plotExposureRateFinal.Rd | 105 man/plotExposureRateFinalFlag.Rd | 64 man/plotInfo.Rd | 74 man/plotInfoOverlay.Rd | 58 man/plotMaxInfo.Rd | 44 man/plotRMSE.Rd | 56 man/plotShadow-methods.Rd | 84 man/pool_cluster-class.Rd | 38 man/saveOutput.Rd | 38 man/simResp-methods.Rd | 194 man/subsetItemPool.Rd | 38 man/subsetTest.Rd | 40 man/test-class.Rd | 50 man/test_cluster-class.Rd | 38 man/theta_EAP.Rd | 52 man/theta_EAP_matrix.Rd | 54 man/theta_EB.Rd | 62 man/theta_EB_single.Rd | 62 man/theta_FB.Rd | 66 man/theta_FB_single.Rd | 66 man/updateConstraints.Rd | 52 tests/testthat.R | 8 tests/testthat/test-ATA.R | 86 tests/testthat/test-examples.R | 10 tests/testthat/test-exposure.R | 78 tests/testthat/test-items.R | 74 vignettes/constraints.Rmd | 505 +- vignettes/constraints.md |only vignettes/rsymphony.Rmd | 254 - 143 files changed, 16068 insertions(+), 15823 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.4 dated 2019-08-01 and 1.4.1 dated 2019-09-12
DESCRIPTION | 8 MD5 | 130 +++++----- NAMESPACE | 1 NEWS.md | 29 ++ R/0nly-internal.R | 13 + R/MCMC-support.R | 52 +++- R/contrast.R | 32 ++ R/emmGrid-methods.R | 52 ++-- R/emmeans-package.R | 2 R/emmeans.R | 4 R/emtrends.R | 91 +++++-- R/helpers.R | 34 ++ R/interfacing.R | 59 ++++ R/plot.emm.R | 14 - R/ref-grid.R | 452 +++++++++++++++++++------------------ R/summary.R | 36 ++ R/transformations.R | 8 inst/doc/FAQs.Rmd | 2 inst/doc/FAQs.html | 12 inst/doc/basics.R | 18 + inst/doc/basics.Rmd | 78 +++++- inst/doc/basics.html | 62 ++++- inst/doc/comparisons.html | 16 - inst/doc/confidence-intervals.R | 21 - inst/doc/confidence-intervals.Rmd | 73 +---- inst/doc/confidence-intervals.html | 85 ++---- inst/doc/interactions.Rmd | 2 inst/doc/interactions.html | 20 - inst/doc/messy-data.Rmd | 5 inst/doc/messy-data.html | 22 - inst/doc/models.Rmd | 8 inst/doc/models.html | 10 inst/doc/predictions.Rmd | 4 inst/doc/predictions.html | 6 inst/doc/sophisticated.html | 11 inst/doc/transformations.R | 6 inst/doc/transformations.Rmd | 33 ++ inst/doc/transformations.html | 22 + inst/doc/utilities.R | 2 inst/doc/utilities.Rmd | 4 inst/doc/utilities.html | 21 - inst/doc/vignette-topics.Rmd | 19 + inst/doc/vignette-topics.html | 27 +- inst/doc/xtending.Rmd | 24 + inst/doc/xtending.html | 22 + man/contrast.Rd | 14 + man/emtrends.Rd | 11 man/extending-emmeans.Rd | 9 man/make.tran.Rd | 8 man/mcmc-support.Rd | 8 man/plot.Rd | 9 man/ref_grid.Rd | 366 +++++++++++++++-------------- man/regrid.Rd | 23 + man/summary.emmGrid.Rd | 6 man/update.emmGrid.Rd | 4 vignettes/FAQs.Rmd | 2 vignettes/basics.Rmd | 78 +++++- vignettes/confidence-intervals.Rmd | 73 +---- vignettes/interactions.Rmd | 2 vignettes/messy-data.Rmd | 5 vignettes/models.Rmd | 8 vignettes/predictions.Rmd | 4 vignettes/transformations.Rmd | 33 ++ vignettes/utilities.Rmd | 4 vignettes/vignette-topics.Rmd | 19 + vignettes/xtending.Rmd | 24 + 66 files changed, 1451 insertions(+), 911 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.1.1 dated 2019-07-24 and 1.1.2 dated 2019-09-12
DESCRIPTION | 8 MD5 | 110 ++++++------ NEWS.md | 4 R/BinaryYScatterPlot.R | 14 + R/ClevelandDotPlot.R | 8 R/ConditionalSmoothedScatterPlot.R | 25 ++ R/DiscreteDistribution.R | 5 R/DistributionPlot.R | 138 +++++++++++----- R/DoubleDensity.R | 25 ++ R/DoubleHistogram.R | 23 ++ R/FitHistoryPlot.R | 27 ++- R/GainCurve.R | 66 ++++--- R/HexBinPlot.R | 15 + R/LiftCurve.R | 8 R/LogLogPlot.R | 26 ++- R/PRTPlot.R | 7 R/PairPlot.R | 23 ++ R/ROC.R | 77 +++++---- R/ScatterBoxPlot.R | 34 ++-- R/ScatterHist.R | 38 +++- R/ShadowHist.R | 57 ++++-- R/ShadowPlot.R | 49 ++++- README.md | 19 -- inst/doc/WVPlots_concept.html | 47 ++--- inst/doc/WVPlots_examples.R | 10 - inst/doc/WVPlots_examples.Rmd | 16 + inst/doc/WVPlots_examples.html | 288 +++++++++++++++++----------------- man/BinaryYScatterPlot.Rd | 6 man/ClevelandDotPlot.Rd | 4 man/ConditionalSmoothedScatterPlot.Rd | 13 + man/DiscreteDistribution.Rd | 5 man/DoubleDensityPlot.Rd | 18 +- man/DoubleHistogramPlot.Rd | 15 + man/GainCurvePlot.Rd | 9 - man/GainCurvePlotC.Rd | 9 - man/GainCurvePlotWithNotation.Rd | 15 + man/HexBinPlot.Rd | 17 +- man/LiftCurvePlot.Rd | 7 man/LogLogPlot.Rd | 12 + man/PRTPlot.Rd | 5 man/PairPlot.Rd | 20 ++ man/PlotDistCountNormal.Rd | 15 + man/PlotDistDensityBeta.Rd | 15 + man/PlotDistDensityNormal.Rd | 22 ++ man/PlotDistHistBeta.Rd | 14 + man/ROCPlot.Rd | 9 - man/ROCPlotPair.Rd | 7 man/ROCPlotPair2.Rd | 8 man/ScatterBoxPlot.Rd | 11 - man/ScatterBoxPlotH.Rd | 11 - man/ScatterHist.Rd | 24 ++ man/ShadowHist.Rd | 18 +- man/ShadowPlot.Rd | 19 ++ man/plot_Keras_fit_trajectory.Rd | 9 - man/plot_fit_trajectory.Rd | 10 + vignettes/WVPlots_examples.Rmd | 16 + 56 files changed, 1055 insertions(+), 475 deletions(-)
Title: Client for the 'Pangaea' Database
Description: Tools to interact with the 'Pangaea' Database
(<https://www.pangaea.de>), including functions for searching for data,
fetching 'datasets' by 'dataset' 'ID', and working with the 'Pangaea'
'OAI-PMH' service.
Author: Scott Chamberlain [aut, cre],
Kara Woo [aut],
Andrew MacDonald [aut],
Naupaka Zimmerman [aut],
Gavin Simpson [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between pangaear versions 0.8.0 dated 2019-08-19 and 0.8.2 dated 2019-09-12
DESCRIPTION | 6 MD5 | 14 NEWS.md | 8 README.md | 133 ++-- man/pg_list_identifiers.Rd | 4 tests/fixtures/pg_search.yml | 852 +------------------------------- tests/fixtures/pg_search_pagination.yml | 508 ------------------- tests/testthat/test-pg_search.r | 4 8 files changed, 153 insertions(+), 1376 deletions(-)
Title: Polish Meteorological and Hydrological Data
Description: Download Polish meteorological and hydrological data from the Institute of Meteorology and Water Management - National Research Institute (<https://dane.imgw.pl/>).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between imgw versions 0.1.0 dated 2019-06-21 and 0.2.0 dated 2019-09-12
DESCRIPTION | 15 ++-- MD5 | 35 +++++---- NEWS.md | 21 +++++ R/clean_metadata_hydro.R | 6 - R/hydro.R | 2 R/hydro_daily.R | 5 - R/meteo.R | 4 - R/meteo_daily.R | 8 +- R/meteo_hourly.R | 4 - R/meteo_monthly.R | 4 - R/meteo_sounding.R | 20 ----- README.md | 176 +++++++++++++++++------------------------------ build |only inst/CITATION | 4 - inst/doc |only man/hydro.Rd | 2 man/imgw-package.Rd | 2 man/meteo.Rd | 2 vignettes |only 19 files changed, 136 insertions(+), 174 deletions(-)
Title: Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Description: Simple, flexible, assertions on data.frame or data.table objects with verbose output for vetting. While other assertion packages apply towards more general use-cases, assertable is tailored towards tabular data. It includes functions to check variable names and values, whether the dataset contains all combinations of a given set of unique identifiers, and whether it is a certain length. In addition, assertable includes utility functions to check the existence of target files and to efficiently import multiple tabular data files into one data.table.
Author: Grant Nguyen [aut, cre]
Maintainer: Grant Nguyen <grant.nguyen@gmail.com>
Diff between assertable versions 0.2.5 dated 2019-05-07 and 0.2.6 dated 2019-09-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/assert_colnames.R | 8 ++++++-- R/assert_nrows.R | 5 +++-- inst/doc/assertion_template.html | 10 +++++----- inst/doc/data_assertion_intro.html | 4 ++-- inst/doc/file_assertion_intro.html | 30 +++++++++++++++--------------- man/assert_colnames.Rd | 4 +++- man/assert_nrows.Rd | 4 +++- 9 files changed, 49 insertions(+), 40 deletions(-)