Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 1.2.0 dated 2019-08-19 and 1.2.2 dated 2019-09-13
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS.md | 9 +++++++++ R/patch_env.R | 4 +++- R/zzz.R | 10 ++++++++++ README.md | 4 ++++ inst/doc/GroupedSampling.html | 4 ++-- inst/doc/R_mapping.html | 4 ++-- inst/doc/logisticexample.html | 4 ++-- inst/unit_tests/test_dotdotdot_issue.R |only 10 files changed, 45 insertions(+), 19 deletions(-)
Title: High Throughput Sequencing of Stable Isotope Probing Data
Analysis
Description: Functions for analyzing high throughput sequencing
stable isotope probing (HTS-SIP) data.
Analyses include high resolution stable isotope probing (HR-SIP),
multi-window high resolution stable isotope probing (MW-HR-SIP),
and quantitative stable isotope probing (q-SIP).
Author: Nicholas Youngblut [aut],
Samuel Barnett [cre, ctb]
Maintainer: Samuel Barnett <seb369@cornell.edu>
Diff between HTSSIP versions 1.4.0 dated 2018-05-15 and 1.4.1 dated 2019-09-13
DESCRIPTION | 9 MD5 | 48 - NEWS.md | 4 R/Util.R | 2 R/delta_BD.R | 7 R/qPCR.R | 3 R/qSIP_atom_excess.R | 4 inst/doc/BD_shifts.html | 707 ++++++++++++++-------- inst/doc/HTSSIP_intro.html | 617 +++++++++++++------ inst/doc/HTSSIP_sim.html | 675 +++++++++++++-------- inst/doc/MW_HR_SIP.html | 957 ++++++++++++++++++------------- inst/doc/beta_diversity_ordinations.html | 577 +++++++++++------- inst/doc/heavy_SIP.html | 624 ++++++++++++-------- inst/doc/qSIP.R | 4 inst/doc/qSIP.Rmd | 4 inst/doc/qSIP.html | 649 +++++++++++++-------- inst/doc/quant_incorp.html | 653 +++++++++++++-------- man/BD_shift.Rd | 3 man/DESeq2_l2fc.Rd | 6 man/HTSSIP_sim.Rd | 5 man/heavy_SIP.Rd | 4 man/phyloseq2table.Rd | 5 man/qPCR_sim.Rd | 4 man/qSIP_bootstrap.Rd | 4 vignettes/qSIP.Rmd | 4 25 files changed, 3499 insertions(+), 2080 deletions(-)
Title: Sensitivity Analysis of Neural Networks
Description: Analysis functions to quantify inputs importance in neural network models.
Functions are available for calculating and plotting the inputs importance and obtaining
the activation function of each neuron layer and its derivatives. The importance of a given
input is defined as the distribution of the derivatives of the output with respect to that
input in each training data point.
Author: José Portela González [aut],
Antonio Muñoz San Roque [aut],
Jaime Pizarroso Gonzalo [ctb, cre]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@alu.comillas.edu>
Diff between NeuralSens versions 0.0.5 dated 2019-07-11 and 0.0.7 dated 2019-09-13
DESCRIPTION | 10 +- MD5 | 14 +-- NAMESPACE | 1 R/ActFunc.R | 103 +++++++++++++++++++------ R/SensAnalysisMLP.R | 196 ++++++++++++++++++++++++++++++++++++++++++------- man/ActFunc.Rd | 9 ++ man/DerActFunc.Rd | 9 ++ man/SensAnalysisMLP.Rd | 8 +- 8 files changed, 287 insertions(+), 63 deletions(-)
Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via a (fast and robust) bootstrap test.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robmed versions 0.3.0 dated 2018-11-05 and 0.4.0 dated 2019-09-13
robmed-0.3.0/robmed/tests/verified_results |only robmed-0.4.0/robmed/DESCRIPTION | 12 robmed-0.4.0/robmed/MD5 | 105 +-- robmed-0.4.0/robmed/NAMESPACE | 9 robmed-0.4.0/robmed/NEWS | 12 robmed-0.4.0/robmed/R/boot.R |only robmed-0.4.0/robmed/R/coef.R | 16 robmed-0.4.0/robmed/R/confint.R | 54 + robmed-0.4.0/robmed/R/fit_mediation.R | 3 robmed-0.4.0/robmed/R/fortify.R | 6 robmed-0.4.0/robmed/R/print.R | 350 ++++++---- robmed-0.4.0/robmed/R/rob_F_test.R | 43 + robmed-0.4.0/robmed/R/robmed-deprecated.R | 22 robmed-0.4.0/robmed/R/summary.R | 295 +++++--- robmed-0.4.0/robmed/R/test_mediation.R | 120 ++- robmed-0.4.0/robmed/build/partial.rdb |binary robmed-0.4.0/robmed/data/BSG2014.RData |binary robmed-0.4.0/robmed/demo/case1.R | 7 robmed-0.4.0/robmed/demo/case2.R | 9 robmed-0.4.0/robmed/demo/case3.R | 9 robmed-0.4.0/robmed/inst/shiny-examples/simulation/server.R | 16 robmed-0.4.0/robmed/inst/shiny-examples/simulation/ui.R | 16 robmed-0.4.0/robmed/man/BSG2014.Rd | 2 robmed-0.4.0/robmed/man/boot_samples.Rd |only robmed-0.4.0/robmed/man/coef.test_mediation.Rd | 2 robmed-0.4.0/robmed/man/robmed-deprecated.Rd | 19 robmed-0.4.0/robmed/man/test_mediation.Rd | 4 robmed-0.4.0/robmed/tests/testthat/test-median_bootstrap-regression-multiple-covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_bootstrap-regression-multiple-no_covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_bootstrap-regression-simple-covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_bootstrap-regression-simple-no_covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_fit-regression-multiple-covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_fit-regression-multiple-no_covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_fit-regression-simple-covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_fit-regression-simple-no_covariates.R |only robmed-0.4.0/robmed/tests/testthat/test-median_sobel-regression.R |only robmed-0.4.0/robmed/tests/testthat/test-robust_bootstrap-covariance.R | 52 - robmed-0.4.0/robmed/tests/testthat/test-robust_bootstrap-regression-multiple-covariates.R | 119 +-- robmed-0.4.0/robmed/tests/testthat/test-robust_bootstrap-regression-multiple-no_covariates.R | 110 +-- robmed-0.4.0/robmed/tests/testthat/test-robust_bootstrap-regression-simple-covariates.R | 104 +- robmed-0.4.0/robmed/tests/testthat/test-robust_bootstrap-regression-simple-no_covariates.R | 94 +- robmed-0.4.0/robmed/tests/testthat/test-robust_fit-regression-multiple-covariates.R | 3 robmed-0.4.0/robmed/tests/testthat/test-robust_fit-regression-multiple-no_covariates.R | 3 robmed-0.4.0/robmed/tests/testthat/test-robust_fit-regression-simple-covariates.R | 3 robmed-0.4.0/robmed/tests/testthat/test-robust_fit-regression-simple-no_covariates.R | 3 robmed-0.4.0/robmed/tests/testthat/test-robust_sobel-covariance.R | 16 robmed-0.4.0/robmed/tests/testthat/test-robust_sobel-regression.R | 44 - robmed-0.4.0/robmed/tests/testthat/test-standard_bootstrap-covariance.R | 72 +- robmed-0.4.0/robmed/tests/testthat/test-standard_bootstrap-regression-multiple-covariates.R | 121 +-- robmed-0.4.0/robmed/tests/testthat/test-standard_bootstrap-regression-multiple-no_covariates.R | 111 +-- robmed-0.4.0/robmed/tests/testthat/test-standard_bootstrap-regression-simple-covariates.R | 106 +-- robmed-0.4.0/robmed/tests/testthat/test-standard_bootstrap-regression-simple-no_covariates.R | 96 +- robmed-0.4.0/robmed/tests/testthat/test-standard_fit-covariance.R | 14 robmed-0.4.0/robmed/tests/testthat/test-standard_fit-regression-multiple-covariates.R | 1 robmed-0.4.0/robmed/tests/testthat/test-standard_fit-regression-multiple-no_covariates.R | 1 robmed-0.4.0/robmed/tests/testthat/test-standard_fit-regression-simple-covariates.R | 1 robmed-0.4.0/robmed/tests/testthat/test-standard_fit-regression-simple-no_covariates.R | 1 robmed-0.4.0/robmed/tests/testthat/test-standard_sobel-covariance.R | 16 robmed-0.4.0/robmed/tests/testthat/test-standard_sobel-regression.R | 43 - 59 files changed, 1362 insertions(+), 903 deletions(-)
Title: Plastome Assembly Coverage Visualization
Description: Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2019) <doi:10.1101/697821>.
Author: Michael Gruenstaeudl [aut, cre],
Nils Jenke [ctb]
Maintainer: Michael Gruenstaeudl <m.gruenstaeudl@fu-berlin.de>
Diff between PACVr versions 0.8.1 dated 2019-07-26 and 0.8.2 dated 2019-09-13
DESCRIPTION | 8 +++--- MD5 | 26 ++++++++++----------- R/PACVr.R | 26 ++++++++++++--------- R/calcCoverage.R | 2 - R/generateHistogramData.R | 2 - R/generateIRGeneData.R | 2 - R/helpers.R | 2 - R/histogramPlotter.R | 22 +++++++---------- R/parseGenes.R | 2 - R/parseRegions.R | 2 - R/visualizeWithRCircos.R | 8 +++--- inst/doc/PACVr_Vignette.Rnw | 53 ++++++++++++++++++++++++++++++------------- inst/doc/PACVr_Vignette.pdf |binary vignettes/PACVr_Vignette.Rnw | 53 ++++++++++++++++++++++++++++++------------- 14 files changed, 126 insertions(+), 82 deletions(-)
Title: Lattice Options and Add-Ins
Description: Various plots and functions that make use of the lattice/trellis plotting framework.
The plots, which include loaPlot(), RgoogleMapsPlot() and trianglePlot(), use panelPal(), a function that
extends 'lattice' and 'hexbin' package methods to automate plot subscript and panel-to-panel
and panel-to-key synchronization/management.
Author: Karl Ropkins
Maintainer: Karl Ropkins <karl.ropkins@gmail.com>
Diff between loa versions 0.2.44.2 dated 2018-10-26 and 0.2.45.4 dated 2019-09-13
loa-0.2.44.2/loa/R/googleMap.R |only loa-0.2.44.2/loa/man/1.2.googleMap.Rd |only loa-0.2.45.4/loa/DESCRIPTION | 22 +- loa-0.2.45.4/loa/MD5 | 24 +- loa-0.2.45.4/loa/NAMESPACE | 33 ++- loa-0.2.45.4/loa/NEWS | 23 ++ loa-0.2.45.4/loa/R/loaMapPlot.R |only loa-0.2.45.4/loa/R/plot.interactives.R | 11 - loa-0.2.45.4/loa/R/trianglePlot.R | 217 ++++++++++++++++++++++++++ loa-0.2.45.4/loa/data/lat.lon.meuse.RData |binary loa-0.2.45.4/loa/data/roadmap.meuse.RData |binary loa-0.2.45.4/loa/man/1.2.loaMapPlot.Rd |only loa-0.2.45.4/loa/man/3.1.example.data.Rd | 6 loa-0.2.45.4/loa/man/5.1.plot.interactives.Rd | 34 +--- loa-0.2.45.4/loa/man/loa-package.Rd | 6 15 files changed, 307 insertions(+), 69 deletions(-)
Title: Scoring the EQ-5D Descriptive System
Description: EQ-5D is a standard instrument (<https://euroqol.org/eq-5d-instruments/>) that measures the quality of life
often used in clinical and economic evaluations of health care technologies. Both adult versions of EQ-5D (EQ-5D-3L and EQ-5D-5L)
contain a descriptive system and visual analog scale. The descriptive system measures the patient's health in 5 dimensions:
the 5L versions has 5 levels and 3L version has 3 levels. The descriptive system scores are usually converted to index values
using country specific values sets (that incorporates the country preferences). This package allows the calculation of both descriptive system
scores to the index value scores. The value sets for EQ-5D-3L are from the references mentioned in the website <https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/valuation/>
The value sets for EQ-5D-3L for a total of 31 countries are used for the valuation (see the user guide for a complete list of references).
The value sets for EQ-5D-5L are obtained from references mentioned in the <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/valuation-standard-value-sets/> and other sources.
The value sets for EQ-5D-5L for a total of 17 countries are used for the valuation (see the user guide for a complete list of references).
The package can also be used to map 5L scores to 3L index values for 10 countries: Denmark, France, Germany, Japan, Netherlands, Spain, Thailand, UK, USA, and Zimbabwe.
The value set and method for mapping are obtained from Van Hout et al (2012) <doi: 10.1016/j.jval.2012.02.008>.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between valueEQ5D versions 0.4.3 dated 2019-08-05 and 0.4.4 dated 2019-09-13
valueEQ5D-0.4.3/valueEQ5D/man/correctImplausibleOrdering.Rd |only valueEQ5D-0.4.4/valueEQ5D/DESCRIPTION | 6 valueEQ5D-0.4.4/valueEQ5D/MD5 | 30 valueEQ5D-0.4.4/valueEQ5D/NAMESPACE | 2 valueEQ5D-0.4.4/valueEQ5D/R/basic_checks.R | 496 +++++----- valueEQ5D-0.4.4/valueEQ5D/R/eq5d.R | 174 ++- valueEQ5D-0.4.4/valueEQ5D/R/globals.R | 12 valueEQ5D-0.4.4/valueEQ5D/README.md | 28 valueEQ5D-0.4.4/valueEQ5D/inst/doc/User_Guide.html | 63 - valueEQ5D-0.4.4/valueEQ5D/man/dot-correctImplausibleOrdering.Rd |only valueEQ5D-0.4.4/valueEQ5D/man/eq5dmap5Lto3L.Rd | 2 valueEQ5D-0.4.4/valueEQ5D/man/getModeForVec.Rd | 2 valueEQ5D-0.4.4/valueEQ5D/man/testFileExistRead.Rd | 2 valueEQ5D-0.4.4/valueEQ5D/man/valueEQ5D3LIndscores.Rd | 2 valueEQ5D-0.4.4/valueEQ5D/man/valueEQ5D5L.Rd | 4 valueEQ5D-0.4.4/valueEQ5D/man/valueEQ5D5LIndscores.Rd | 2 valueEQ5D-0.4.4/valueEQ5D/tests/testthat/testthat.R | 242 ++-- 17 files changed, 523 insertions(+), 544 deletions(-)
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Höhle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available monitoring procedures is
given by Salmon et al. (2016) <doi:10.18637/jss.v070.i10>.
For the retrospective analysis of epidemic spread, the package provides
three endemic-epidemic modeling frameworks with tools for visualization,
likelihood inference, and simulation. hhh4() estimates models for
(multivariate) count time series following Paul and Held (2011)
<doi:10.1002/sim.4177> and Meyer and Held (2014) <doi:10.1214/14-AOAS743>.
twinSIR() models the susceptible-infectious-recovered (SIR) event
history of a fixed population, e.g, epidemics across farms or networks,
as a multivariate point process as proposed by Höhle (2009)
<doi:10.1002/bimj.200900050>. twinstim() estimates self-exciting point
process models for a spatio-temporal point pattern of infective events,
e.g., time-stamped geo-referenced surveillance data, as proposed by
Meyer et al. (2012) <doi:10.1111/j.1541-0420.2011.01684.x>.
A recent overview of the implemented space-time modeling frameworks
for epidemic phenomena is given by Meyer et al. (2017)
<doi:10.18637/jss.v077.i11>.
Author: Michael Höhle [aut, ths] (<https://orcid.org/0000-0002-0423-6702>),
Sebastian Meyer [aut, cre] (<https://orcid.org/0000-0002-1791-9449>),
Michaela Paul [aut],
Leonhard Held [ctb, ths],
Howard Burkom [ctb],
Thais Correa [ctb],
Mathias Hofmann [ctb],
Christian Lang [ctb],
Juliane Manitz [ctb],
Andrea Riebler [ctb],
Daniel Sabanés Bové [ctb],
Maëlle Salmon [ctb],
Dirk Schumacher [ctb],
Stefan Steiner [ctb],
Mikko Virtanen [ctb],
Wei Wei [ctb],
Valentin Wimmer [ctb],
R Core Team [ctb] (A few code segments are modified versions of code
from base R)
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between surveillance versions 1.17.0 dated 2019-02-22 and 1.17.1 dated 2019-09-13
DESCRIPTION | 8 MD5 | 131 ++++----- NAMESPACE | 19 - R/hcl.colors.R | 13 R/hhh4.R | 437 +++++++++++++++---------------- R/hhh4_W.R | 18 - R/hhh4_plot.R | 9 R/pit.R | 50 +-- R/sts.R | 17 - R/sts_coerce.R | 10 R/stsplot_space.R | 10 R/stsplot_spacetime.R | 40 +- R/twinstim.R | 12 R/twinstim_methods.R | 60 ++-- R/twinstim_siaf_powerlaw1.R |only build/partial.rdb |binary build/vignette.rds |binary data/imdepifit.RData |binary demo/fluBYBW.R | 30 +- demo/v77i11.R | 4 inst/NEWS.Rd | 38 ++ inst/doc/glrnb.pdf |binary inst/doc/hhh4.pdf |binary inst/doc/hhh4_spacetime.Rnw | 3 inst/doc/hhh4_spacetime.pdf |binary inst/doc/monitoringCounts.pdf |binary inst/doc/surveillance.pdf |binary inst/doc/twinSIR.Rnw | 3 inst/doc/twinSIR.pdf |binary inst/doc/twinstim.Rnw | 8 inst/doc/twinstim.pdf |binary man/R0.Rd | 20 - man/epidata.Rd | 9 man/hcl.colors.Rd | 22 - man/hhh4_methods.Rd | 16 - man/hhh4_plot.Rd | 7 man/hhh4_simulate_scores.Rd | 33 +- man/imdepi.Rd | 11 man/measles.weser.Rd | 10 man/pit.Rd | 5 man/sts-class.Rd | 135 ++++++--- man/stsAggregate.Rd | 47 +-- man/stsSlots.Rd | 20 - man/stsXtrct.Rd | 38 +- man/sts_tidy.Rd | 2 man/stsplot.Rd | 3 man/stsplot_space.Rd | 7 man/toLatex.sts.Rd | 9 man/twinstim.Rd | 8 man/twinstim_iaf.Rd | 13 man/twinstim_simulation.Rd | 11 tests/testthat/test-algo.glrnb.R | 44 +-- tests/testthat/test-farringtonFlexible.R | 12 tests/testthat/test-formatDate.R | 46 +-- tests/testthat/test-hhh4+algo.hhh.R | 20 - tests/testthat/test-hhh4_ARasNE.R | 8 tests/testthat/test-nbOrder.R | 8 tests/testthat/test-plapply.R | 4 tests/testthat/test-siafs.R | 5 tests/testthat/test-tiafs.R | 28 + tests/testthat/test-toLatex.sts.R | 18 - tests/testthat/test-twinstim_score.R | 15 - vignettes/hhh4_spacetime.Rnw | 3 vignettes/surveillance-hmm.pdf |binary vignettes/twinSIR.Rnw | 3 vignettes/twinstim-cache.RData |binary vignettes/twinstim.Rnw | 8 67 files changed, 891 insertions(+), 677 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Simulation Models
Description: Provide the core discrete event simulation (DES) framework for
implementing spatially explicit simulation models. The core DES components
facilitate modularity, and easily enable the user to include additional
functionality by running user-built simulation modules. Now includes (experimental)
conditional scheduling.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.core versions 0.2.5 dated 2019-03-19 and 0.2.6 dated 2019-09-13
DESCRIPTION | 38 MD5 | 127 - NAMESPACE | 8 NEWS.md | 35 R/cache.R | 92 R/copy.R | 25 R/downloadData.R | 1 R/experiment.R | 1 R/helpers.R | 11 R/modActiveBinding.R |only R/module-define.R | 20 R/moduleMetadata.R | 6 R/restart.R |only R/save.R | 4 R/simList-accessors.R | 159 + R/simList-class.R | 27 R/simulation-parseModule.R | 34 R/simulation-simInit.R | 143 - R/simulation-spades.R | 202 +- R/spades-core-package.R | 15 R/times.R | 8 R/zzz.R | 7 build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/i-introduction.Rmd | 2 inst/doc/i-introduction.html | 409 +++- inst/doc/ii-modules.R | 2 inst/doc/ii-modules.Rmd | 2 inst/doc/ii-modules.html | 3591 ++++++++++++++++++++++++++++++++----- inst/doc/iii-cache.html | 823 ++++---- man/SpaDES.core-package.Rd | 13 man/addDepends.Rd | 4 man/all.equal.simList.Rd | 2 man/checkpoint.Rd | 4 man/defineModule.Rd | 2 man/defineParameter.Rd | 22 man/globals.Rd | 4 man/objSize.simList.Rd | 15 man/objects.Rd | 4 man/packages.Rd | 4 man/params.Rd | 28 man/progress.Rd | 4 man/restartSpades.Rd |only man/robustDigest.Rd | 18 man/simList-accessors-envir.Rd | 4 man/simList-accessors-events.Rd | 4 man/simList-accessors-inout.Rd | 4 man/simList-accessors-metadata.Rd | 6 man/simList-accessors-modules.Rd | 4 man/simList-accessors-paths.Rd | 4 man/simList-accessors-times.Rd | 4 man/simList-class.Rd | 13 man/tagsByClass.Rd | 2 tests/testthat/helper-initTests.R | 13 tests/testthat/test-cache.R | 16 tests/testthat/test-checkpoint.R | 4 tests/testthat/test-downloadData.R | 16 tests/testthat/test-experiment.R | 2 tests/testthat/test-load.R | 28 tests/testthat/test-mod.R | 56 tests/testthat/test-save.R | 27 tests/testthat/test-simList.R | 85 tests/testthat/test-simulation.R | 8 tests/testthat/test-timeunits.R | 225 +- vignettes/i-introduction.Rmd | 2 vignettes/ii-modules.Rmd | 2 66 files changed, 4974 insertions(+), 1479 deletions(-)
Title: Plotting Field Plans for Agricultural Experiments
Description: A function for plotting maps of agricultural field experiments that
are laid out in grids.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between desplot versions 1.5 dated 2019-04-03 and 1.6 dated 2019-09-13
DESCRIPTION | 8 +-- MD5 | 28 ++++++------ NAMESPACE | 1 NEWS.md | 22 ++++++--- R/desplot.R | 95 +++++++++++++++++++++++++++++++---------- R/geom_tileborder.R | 3 - R/ggdesplot.R | 46 +++++++++++++++++++ build/vignette.rds |binary inst/doc/desplot_examples.html | 52 ++++++++++++---------- man/desplot.Rd | 35 +++++++++------ man/figures |only man/geom_tileborder.Rd | 5 +- man/panel.outlinelevelplot.Rd | 10 ++-- tests/testthat/test_desplot.R | 15 ++++-- 14 files changed, 226 insertions(+), 94 deletions(-)
Title: Easy Regression
Description: Performs analysis of regression in simple designs with quantitative treatments,
including mixed models and non linear models.
Author: Emmanuel Arnhold
Maintainer: Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>
Diff between easyreg versions 3.0 dated 2019-08-02 and 4.0 dated 2019-09-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/bl.R | 5 +++++ man/easyreg-package.Rd | 5 +++-- 4 files changed, 15 insertions(+), 9 deletions(-)
Title: Deep Time Redox Analysis of the Geobiology Ontology Network
Description: Visualization and manipulation of the mineral-chemistry network across deep time on earth.
Author: Stephanie J. Spielman [aut, cre]
Maintainer: Stephanie J. Spielman <spielman@rowan.edu>
Diff between dragon versions 0.1.0 dated 2019-05-08 and 0.2.0 dated 2019-09-13
dragon-0.1.0/dragon/inst/extdata/element_electronegativities.csv |only dragon-0.1.0/dragon/inst/extdata/element_electronegativities.csv.zip |only dragon-0.1.0/dragon/inst/extdata/rruff_minerals.csv.zip |only dragon-0.1.0/dragon/inst/extdata/rruff_redox_states.csv.zip |only dragon-0.1.0/dragon/inst/extdata/rruff_separated_elements.csv.zip |only dragon-0.1.0/dragon/tests |only dragon-0.2.0/dragon/DESCRIPTION | 13 dragon-0.2.0/dragon/MD5 | 45 dragon-0.2.0/dragon/NEWS.md | 2 dragon-0.2.0/dragon/README.md | 10 dragon-0.2.0/dragon/inst/doc/vignette.html | 10 dragon-0.2.0/dragon/inst/dragon/build_network.R | 242 + dragon-0.2.0/dragon/inst/dragon/defs.R |only dragon-0.2.0/dragon/inst/dragon/server.R | 1225 +++++----- dragon-0.2.0/dragon/inst/dragon/ui.R | 417 ++- dragon-0.2.0/dragon/inst/extdata/element_information.csv |only dragon-0.2.0/dragon/inst/extdata/extinctions.csv |only dragon-0.2.0/dragon/inst/extdata/geo_timeline.csv |only dragon-0.2.0/dragon/inst/extdata/locality_longnames.csv.zip |only dragon-0.2.0/dragon/inst/extdata/obtain_med_data.R | 87 dragon-0.2.0/dragon/inst/extdata/rruff_chemistry.csv |only dragon-0.2.0/dragon/inst/extdata/rruff_locality1.csv.zip |only dragon-0.2.0/dragon/inst/extdata/rruff_locality2.csv.zip |only dragon-0.2.0/dragon/inst/extdata/rruff_redox_states.csv |only dragon-0.2.0/dragon/inst/extdata/rruff_separated_elements.csv |only 25 files changed, 1243 insertions(+), 808 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.1.0 dated 2019-06-06 and 1.1.1 dated 2019-09-13
sjlabelled-1.1.0/sjlabelled/R/read_write.R |only sjlabelled-1.1.1/sjlabelled/DESCRIPTION | 22 ++- sjlabelled-1.1.1/sjlabelled/MD5 | 33 ++--- sjlabelled-1.1.1/sjlabelled/NAMESPACE | 2 sjlabelled-1.1.1/sjlabelled/NEWS.md | 12 ++ sjlabelled-1.1.1/sjlabelled/R/as_labelled.R | 21 ++- sjlabelled-1.1.1/sjlabelled/R/read.R |only sjlabelled-1.1.1/sjlabelled/R/remove_all_labels.R | 2 sjlabelled-1.1.1/sjlabelled/R/to_label.R | 7 + sjlabelled-1.1.1/sjlabelled/R/unlabel.R | 2 sjlabelled-1.1.1/sjlabelled/R/write.R |only sjlabelled-1.1.1/sjlabelled/README.md | 8 - sjlabelled-1.1.1/sjlabelled/build/vignette.rds |binary sjlabelled-1.1.1/sjlabelled/inst/doc/intro_sjlabelled.html | 72 ++++++------ sjlabelled-1.1.1/sjlabelled/inst/doc/labelleddata.html | 10 + sjlabelled-1.1.1/sjlabelled/inst/doc/quasiquotation.html | 74 ++++++------- sjlabelled-1.1.1/sjlabelled/man/as_labelled.Rd | 7 + sjlabelled-1.1.1/sjlabelled/man/read_spss.Rd | 20 ++- sjlabelled-1.1.1/sjlabelled/man/write_spss.Rd | 2 19 files changed, 172 insertions(+), 122 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write data from neuroimaging files in 'FreeSurfer' <http://freesurfer.net/> binary formats. This includes the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas.
Author: Tim Schäfer
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.0 dated 2019-09-04 and 0.1.1 dated 2019-09-13
DESCRIPTION | 13 + MD5 | 57 +++++-- NAMESPACE | 5 R/fs_atlas_region_agg.R |only R/read_fs_annot.R |only R/read_fs_curv.R | 48 +++++- R/read_fs_mgh.R | 139 +++++++++++++----- R/write_fs_curv.R |only R/write_fs_mgh.R |only README.md | 63 +++----- build/vignette.rds |binary inst/doc/freesurferformats.R | 81 ++++++++++ inst/doc/freesurferformats.Rmd | 184 +++++++++++++++++++++++- inst/doc/freesurferformats.html | 199 ++++++++++++++++++++++++-- inst/doc/freesurferformats_write.R |only inst/doc/freesurferformats_write.Rmd |only inst/doc/freesurferformats_write.html |only inst/extdata/lh.aparc.annot.gz |only inst/extdata/lh.area.gz |only inst/extdata/lh.curv.fwhm10.fsaverage.mgz |only man/fs.atlas.region.agg.Rd |only man/fs.atlas.region.agg.group.Rd |only man/fs.get.morph.file.ext.for.format.Rd |only man/fs.get.morph.file.format.from.filename.Rd |only man/fs.spread.value.over.region.Rd |only man/fs.value.list.from.agg.res.Rd |only man/fwrite3.Rd |only man/guess.filename.is.gzipped.Rd |only man/read.fs.annot.Rd |only man/read.fs.curv.Rd | 2 man/read.fs.mgh.Rd | 11 + man/read.fs.morph.Rd |only man/readcolortable.Rd |only man/write.fs.curv.Rd |only man/write.fs.mgh.Rd |only man/write.fs.morph.Rd |only tests/testthat/test-fs-atlas-region_agg.R |only tests/testthat/test-read-fs-annot.R |only tests/testthat/test-read-fs-curv.R | 26 +++ tests/testthat/test-read-fs-mgh.R | 115 ++++++++++++++- tests/testthat/test-write-fs-curv.R |only tests/testthat/test-write-fs-mgh.R |only vignettes/freesurferformats.Rmd | 184 +++++++++++++++++++++++- vignettes/freesurferformats_write.Rmd |only 44 files changed, 999 insertions(+), 128 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Multivariate GARCH Models
Description: Feasible multivariate GARCH models including DCC, GO-GARCH and Copula-GARCH. See Boudt, Galanos, Payseur and Zivot (2019) for a review of multivariate GARCH models <doi:10.1016/bs.host.2019.01.001>.
Author: Alexios Ghalanos <alexios@4dscape.com>
Maintainer: Alexios Ghalanos <alexios@4dscape.com>
Diff between rmgarch versions 1.3-6 dated 2019-01-15 and 1.3-7 dated 2019-09-13
ChangeLog | 499 +-- DESCRIPTION | 10 MD5 | 84 NAMESPACE | 72 R/copula-fn.R | 434 +-- R/copula-methods.R | 1080 +++---- R/gogarch-main.R | 1654 +++++------ R/gogarch-methods.R | 5190 ++++++++++++++++++------------------- R/rdcc-main.R | 4568 ++++++++++++++++---------------- R/rdcc-methods.R | 2740 +++++++++---------- R/rdcc-plots.R | 3180 +++++++++++----------- R/rmgarch-classes.R | 132 R/rmgarch-functions.R | 406 +- R/rmgarch-ica.R | 3260 +++++++++++------------ R/rmgarch-mmean.R | 1066 +++---- README.md | 10 build/vignette.rds |binary inst/CITATION | 42 inst/COPYRIGHTS | 20 inst/doc/The_rmgarch_models.Rnw | 332 +- inst/doc/The_rmgarch_models.pdf |binary inst/rmgarch.tests/rmgarch.test1.R | 2206 +++++++-------- inst/rmgarch.tests/rmgarch.test3.R | 3018 ++++++++++----------- inst/rmgarch.tests/rmgarch.test6.R | 110 man/DCCfilter-class.Rd | 172 - man/DCCfit-class.Rd | 190 - man/DCCforecast-class.Rd | 134 man/DCCroll-class.Rd | 142 - man/DCCsim-class.Rd | 114 man/cGARCHfit-class.Rd | 140 man/cGARCHsim-class.Rd | 116 man/goGARCHfilter-class.Rd | 332 +- man/goGARCHfit-class.Rd | 396 +- man/goGARCHforecast-class.Rd | 366 +- man/goGARCHroll-class.Rd | 212 - man/goGARCHsim-class.Rd | 210 - man/gogarchsim-methods.Rd | 100 man/rmgarch-package.Rd | 150 - src/Makevars | 4 src/ica.cpp | 4 src/rdcc.cpp | 4 vignettes/The_rmgarch_models.Rnw | 332 +- vignettes/rmgarch1.tex | 1948 ++++++------- 43 files changed, 17592 insertions(+), 17587 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.1.0 dated 2019-09-12 and 2.1.1 dated 2019-09-13
DESCRIPTION | 8 +++---- MD5 | 8 +++---- R/Biplot.R | 52 +++++++++++++++++++++++-------------------------- man/Biplot.Rd | 13 +++++------- man/MVar.pt-package.Rd | 4 +-- 5 files changed, 41 insertions(+), 44 deletions(-)
Title: Multivariate Analysis
Description: Package for multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.1.0 dated 2019-09-12 and 2.1.1 dated 2019-09-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Biplot_English.R | 47 ++++++++++++++++++++++------------------------- man/Biplot_English.Rd | 13 ++++++------- man/MVar-package.Rd | 4 ++-- 5 files changed, 38 insertions(+), 42 deletions(-)
Title: Simulation of Graphical Correlation Matrices
Description: Simulation of correlation matrices possibly constrained by a given undirected or acyclic directed graph. In particular, the package provides functions that implement the simulation methods described in Córdoba et al. (2018a) <doi:10.1007/978-3-030-03493-1_13>, Córdoba et al. (2018b) <doi:10.1145/2695664.2695717> and Córdoba et al. (2019) <arXiv:1909.01062>.
Author: Irene Córdoba [aut, cre] (<https://orcid.org/0000-0002-3252-4234>),
Gherardo Varando [aut] (<https://orcid.org/0000-0002-6708-1103>),
Concha Bielza [ths] (<https://orcid.org/0000-0001-7109-2668>),
Pedro Larrañaga [ths] (<https://orcid.org/0000-0003-0652-9872>)
Maintainer: Irene Córdoba <irene.cordoba@upm.es>
Diff between gmat versions 0.2.0 dated 2018-12-03 and 0.2.1 dated 2019-09-13
gmat-0.2.0/gmat/R/cov_ug.R |only gmat-0.2.0/gmat/man/anti_t.Rd |only gmat-0.2.0/gmat/man/cov_ug.Rd |only gmat-0.2.0/gmat/tests/testthat/test_cov_ug.R |only gmat-0.2.1/gmat/DESCRIPTION | 14 - gmat-0.2.1/gmat/MD5 | 39 ++--- gmat-0.2.1/gmat/NAMESPACE | 5 gmat-0.2.1/gmat/NEWS.md | 40 +++++ gmat-0.2.1/gmat/R/cor_dag.R | 198 ++++---------------------- gmat-0.2.1/gmat/R/cor_ug.R |only gmat-0.2.1/gmat/R/utils.R | 98 ++++++++++-- gmat-0.2.1/gmat/README.md | 158 +++++++++++++------- gmat-0.2.1/gmat/inst/CITATION | 33 +++- gmat-0.2.1/gmat/man/cor_dag.Rd | 34 ---- gmat-0.2.1/gmat/man/cor_ug.Rd |only gmat-0.2.1/gmat/man/mh.Rd | 16 +- gmat-0.2.1/gmat/man/rgraph.Rd | 27 ++- gmat-0.2.1/gmat/man/set_cond_number.Rd | 7 gmat-0.2.1/gmat/man/uchol.Rd |only gmat-0.2.1/gmat/man/ug_to_dag.Rd |only gmat-0.2.1/gmat/man/vectorize.Rd | 4 gmat-0.2.1/gmat/src/gmn_sampling.c | 35 ++-- gmat-0.2.1/gmat/tests/testthat/test_cor_dag.R | 61 +++++--- gmat-0.2.1/gmat/tests/testthat/test_cor_ug.R |only gmat-0.2.1/gmat/tests/testthat/test_utils.R | 71 +++++++++ 25 files changed, 487 insertions(+), 353 deletions(-)
Title: Influenza-Attributable Mortality with Distributed-Lag Models
Description: Functions to estimate the mortality attributable to
influenza and temperature, using distributed-lag nonlinear models
(DLNMs), as first implemented in
Lytras et al. (2019) <doi:10.2807/1560-7917.ES.2019.24.14.1800118>.
Full descriptions of underlying DLNM methodology in Gasparrini et al.
<doi:10.1002/sim.3940> (DLNMs),
<doi:10.1186/1471-2288-14-55> (attributable risk from DLNMs) and
<doi:10.1002/sim.5471> (multivariate meta-analysis).
Author: Theodore Lytras [aut, cre] (<https://orcid.org/0000-0002-4146-4122>),
Antonio Gasparrini [ctb] (<https://orcid.org/0000-0002-2271-3568>),
Shuangcai Wang [ctb]
Maintainer: Theodore Lytras <thlytras@gmail.com>
Diff between FluMoDL versions 0.0.2 dated 2019-07-28 and 0.0.3 dated 2019-09-13
DESCRIPTION | 8 ++++---- MD5 | 31 +++++++++++++++++++------------ NAMESPACE | 6 ++++++ NEWS.md |only R/attrMort.R | 20 +++++++++++--------- R/fitFluMoDL.R | 46 ++++++++++++++++++++++++++++++++++++++-------- R/greece-data.R | 11 ++++++----- R/hasPeriodic.R |only R/hasRSV.R | 2 +- R/linterp.R |only R/metaFluMoDL.R | 3 +++ R/predict.FluMoDL.R |only R/summary.FluMoDL.R | 2 +- R/weather.R | 15 ++++++++------- man/fitFluMoDL.Rd | 8 ++++++-- man/greece.Rd | 11 ++++++----- man/hasPeriodic.Rd |only man/hasRSV.Rd | 2 +- man/linterp.Rd |only man/predict.FluMoDL.Rd |only 20 files changed, 110 insertions(+), 55 deletions(-)
Title: Methods for Calculating 'EQ-5D' Utility Index Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://www.euroqol.org>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://www.euroqol.org/eq-5d-instruments/eq-5d-3l-about>) or a five-level
(EQ-5D-5L, <https://www.euroqol.org/eq-5d-instruments/eq-5d-5l-about>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension scores. 20 TTO and 11 VAS EQ-5D-3L value
sets including those for countries in Szende et al (2007)
<doi:10.1007/1-4020-5511-0> and Szende et al (2014)
<doi:10.1007/978-94-007-7596-1>, 16 EQ-5D-5L EQ-VT value sets from the EuroQol
website, and the EQ-5D-5L crosswalk value sets developed by van Hout et al. (2012)
<doi:10.1016/j.jval.2012.02.008> are included. Additionally, a shiny web tool is
included to enable the calculation and visualisation of EQ-5D index values via a
web browser using EQ-5D dimension scores stored in CSV or Excel files.
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.2.0 dated 2019-06-27 and 0.3.0 dated 2019-09-13
eq5d-0.2.0/eq5d/man/figures/shiny_app_screenshot_plots.png |only eq5d-0.3.0/eq5d/DESCRIPTION | 14 eq5d-0.3.0/eq5d/MD5 | 48 +- eq5d-0.3.0/eq5d/NEWS.md | 18 eq5d-0.3.0/eq5d/R/data.R | 15 eq5d-0.3.0/eq5d/R/eq5d3l.R | 52 ++ eq5d-0.3.0/eq5d/R/shiny.R | 2 eq5d-0.3.0/eq5d/README.md | 18 eq5d-0.3.0/eq5d/data/tto.RData |binary eq5d-0.3.0/eq5d/data/vas.RData |binary eq5d-0.3.0/eq5d/data/vt.RData |binary eq5d-0.3.0/eq5d/inst/doc/eq5d.Rmd | 2 eq5d-0.3.0/eq5d/inst/doc/eq5d.html | 20 eq5d-0.3.0/eq5d/inst/shiny/server.R | 240 ++++++++--- eq5d-0.3.0/eq5d/inst/shiny/ui.R | 141 ++++-- eq5d-0.3.0/eq5d/man/CW.Rd | 2 eq5d-0.3.0/eq5d/man/TTO.Rd | 8 eq5d-0.3.0/eq5d/man/VAS.Rd | 11 eq5d-0.3.0/eq5d/man/VT.Rd | 3 eq5d-0.3.0/eq5d/man/eq5d-package.Rd | 4 eq5d-0.3.0/eq5d/man/figures/shiny_app_screenshot_density.png |only eq5d-0.3.0/eq5d/man/figures/shiny_app_screenshot_ecdf.png |only eq5d-0.3.0/eq5d/man/figures/shiny_app_screenshot_main.png |binary eq5d-0.3.0/eq5d/man/figures/shiny_app_screenshot_radar.png |only eq5d-0.3.0/eq5d/tests/testthat/test-eq5d3l.R | 62 ++ eq5d-0.3.0/eq5d/tests/testthat/test-eq5d5l.R | 13 eq5d-0.3.0/eq5d/vignettes/eq5d.Rmd | 2 27 files changed, 500 insertions(+), 175 deletions(-)
Title: Toolkit for Credit Modeling
Description: Provides a highly efficient R tool suite for Credit Modeling, Analysis and Visualization. Contains infrastructure functionalities such as data exploration and preparation, missing values treatment, outliers treatment, variable derivation, variable selection, dimensionality reduction, grid search for hyper parameters, data mining and visualization, model evaluation, strategy analysis etc. This package is designed to make the development of binary classification models (machine learning based models as well as credit scorecard) simpler and faster.
1.Anderson, R. (2007). The credit scoring toolkit: Theory and practice for retail credit risk management and decision automation.
2.Find, S. (2012, ISBN13: 9780230347762). Credit scoring, response modelling and insurance rating:A practical guide to forecasting consumer behaviour.
Author: Dongping Fan [aut, cre]
Maintainer: Dongping Fan <fdp@pku.edu.cn>
Diff between creditmodel versions 1.1.2 dated 2019-09-02 and 1.1.3 dated 2019-09-13
creditmodel-1.1.2/creditmodel/man/perf_table.Rd |only creditmodel-1.1.3/creditmodel/DESCRIPTION | 12 creditmodel-1.1.3/creditmodel/MD5 | 92 creditmodel-1.1.3/creditmodel/NAMESPACE | 24 creditmodel-1.1.3/creditmodel/NEWS.md | 28 creditmodel-1.1.3/creditmodel/R/data_anaylsis.R | 646 +- creditmodel-1.1.3/creditmodel/R/data_cleansing.R | 86 creditmodel-1.1.3/creditmodel/R/data_exploration.R | 183 creditmodel-1.1.3/creditmodel/R/data_process_tools.R | 582 +- creditmodel-1.1.3/creditmodel/R/data_transformation.R | 306 - creditmodel-1.1.3/creditmodel/R/data_visualization.R | 761 ++- creditmodel-1.1.3/creditmodel/R/essential_algorithms.R | 69 creditmodel-1.1.3/creditmodel/R/example_data.r | 681 +- creditmodel-1.1.3/creditmodel/R/model_training.R | 2667 +++++------ creditmodel-1.1.3/creditmodel/R/outliers_missing_treatment.R | 30 creditmodel-1.1.3/creditmodel/R/variable_binning.R | 304 - creditmodel-1.1.3/creditmodel/R/variable_selection.R | 79 creditmodel-1.1.3/creditmodel/R/zzz.R |only creditmodel-1.1.3/creditmodel/inst/doc/demo.html | 4 creditmodel-1.1.3/creditmodel/inst/doc/demo.rmd | 2 creditmodel-1.1.3/creditmodel/man/UCICreditCard.Rd | 10 creditmodel-1.1.3/creditmodel/man/check_rules.Rd |only creditmodel-1.1.3/creditmodel/man/data_cleansing.Rd | 30 creditmodel-1.1.3/creditmodel/man/data_exploration.Rd | 8 creditmodel-1.1.3/creditmodel/man/entry_rate_na.Rd | 2 creditmodel-1.1.3/creditmodel/man/get_bins_table_all.Rd | 23 creditmodel-1.1.3/creditmodel/man/get_logistic_coef.Rd | 5 creditmodel-1.1.3/creditmodel/man/get_names.Rd | 4 creditmodel-1.1.3/creditmodel/man/get_plots.Rd | 26 creditmodel-1.1.3/creditmodel/man/get_psi_plots.Rd |only creditmodel-1.1.3/creditmodel/man/get_score_card.Rd | 2 creditmodel-1.1.3/creditmodel/man/get_x_list.Rd | 4 creditmodel-1.1.3/creditmodel/man/ks_value.Rd | 41 creditmodel-1.1.3/creditmodel/man/lasso_filter.Rd | 14 creditmodel-1.1.3/creditmodel/man/lendingclub.Rd | 13 creditmodel-1.1.3/creditmodel/man/lift_value.Rd |only creditmodel-1.1.3/creditmodel/man/lr_vif.Rd |only creditmodel-1.1.3/creditmodel/man/model_result_plot.Rd |only creditmodel-1.1.3/creditmodel/man/multi_left_jion.Rd |only creditmodel-1.1.3/creditmodel/man/p_to_score.Rd |only creditmodel-1.1.3/creditmodel/man/partial_dependence_plot.Rd | 2 creditmodel-1.1.3/creditmodel/man/pred_score.Rd | 7 creditmodel-1.1.3/creditmodel/man/pred_xgb.Rd |only creditmodel-1.1.3/creditmodel/man/process_nas.Rd | 8 creditmodel-1.1.3/creditmodel/man/process_outliers.Rd | 2 creditmodel-1.1.3/creditmodel/man/re_code.Rd |only creditmodel-1.1.3/creditmodel/man/read_dt.Rd |only creditmodel-1.1.3/creditmodel/man/score_transfer.Rd | 3 creditmodel-1.1.3/creditmodel/man/str_match.Rd |only creditmodel-1.1.3/creditmodel/man/time_transfer.Rd | 3 creditmodel-1.1.3/creditmodel/man/tnr_value.Rd |only creditmodel-1.1.3/creditmodel/man/xgb_data.Rd | 4 creditmodel-1.1.3/creditmodel/man/xgb_params.Rd | 4 creditmodel-1.1.3/creditmodel/vignettes/demo.rmd | 2 54 files changed, 3834 insertions(+), 2939 deletions(-)
Title: Correspondence Analysis Variants
Description: Provides six variants of two-way correspondence analysis (ca):
simple ca, singly ordered ca, doubly ordered ca, non symmetrical ca,
singly ordered non symmetrical ca, and doubly ordered non symmetrical
ca.
Author: Rosaria Lombardo and Eric J Beh
Maintainer: Rosaria Lombardo <rosaria.lombardo@unicampania.it>
Diff between CAvariants versions 4.0 dated 2019-01-14 and 5.0 dated 2019-09-13
CAvariants-4.0/CAvariants/R/caellipseprint.R |only CAvariants-4.0/CAvariants/R/caplot3d.R |only CAvariants-4.0/CAvariants/R/nscaellipseprint.R |only CAvariants-4.0/CAvariants/man/caellipseprint.Rd |only CAvariants-4.0/CAvariants/man/caplot3d.Rd |only CAvariants-4.0/CAvariants/man/nscaellipseprint.Rd |only CAvariants-5.0/CAvariants/DESCRIPTION | 10 - CAvariants-5.0/CAvariants/MD5 | 74 +++++------ CAvariants-5.0/CAvariants/NAMESPACE | 8 - CAvariants-5.0/CAvariants/R/CAvariants.R | 57 ++++---- CAvariants-5.0/CAvariants/R/cabasic.R | 3 CAvariants-5.0/CAvariants/R/caellipse-allaxes.R |only CAvariants-5.0/CAvariants/R/caellipse.R | 56 ++++---- CAvariants-5.0/CAvariants/R/nscaellipse.R | 59 ++++----- CAvariants-5.0/CAvariants/R/plot.CAvariants.R | 66 +++++----- CAvariants-5.0/CAvariants/R/plotone.R |only CAvariants-5.0/CAvariants/R/plotoneold.R |only CAvariants-5.0/CAvariants/R/print.CAvariants.R | 12 - CAvariants-5.0/CAvariants/R/trendplot.R | 15 +- CAvariants-5.0/CAvariants/data/asbestos.rda |binary CAvariants-5.0/CAvariants/data/shopdataM.rda |binary CAvariants-5.0/CAvariants/man/CAvariants.Rd | 114 +++++++++-------- CAvariants-5.0/CAvariants/man/angle.Rd | 7 - CAvariants-5.0/CAvariants/man/asbestos.Rd | 15 +- CAvariants-5.0/CAvariants/man/cabasic.Rd | 6 CAvariants-5.0/CAvariants/man/caellipse.Rd | 76 +++++------ CAvariants-5.0/CAvariants/man/compsonetable.exe.Rd | 5 CAvariants-5.0/CAvariants/man/compstable.exe.Rd | 16 +- CAvariants-5.0/CAvariants/man/docabasic.Rd | 23 +-- CAvariants-5.0/CAvariants/man/donscabasic.Rd | 21 +-- CAvariants-5.0/CAvariants/man/ellipse.Rd | 10 - CAvariants-5.0/CAvariants/man/emerson.poly.Rd | 14 +- CAvariants-5.0/CAvariants/man/nscabasic.Rd | 9 - CAvariants-5.0/CAvariants/man/nscaellipse.Rd | 67 +++++----- CAvariants-5.0/CAvariants/man/plot.CAvariants.Rd | 131 ++++++++++---------- CAvariants-5.0/CAvariants/man/plotone.Rd |only CAvariants-5.0/CAvariants/man/print.CAvariants.Rd | 96 +++++++------- CAvariants-5.0/CAvariants/man/printwithaxes.Rd | 13 + CAvariants-5.0/CAvariants/man/shopdataM.Rd | 15 +- CAvariants-5.0/CAvariants/man/socabasic.Rd | 24 ++- CAvariants-5.0/CAvariants/man/sonscabasic.Rd | 25 ++- CAvariants-5.0/CAvariants/man/summary.CAvariants.Rd | 64 ++++----- CAvariants-5.0/CAvariants/man/trendplot.Rd | 35 ++--- 43 files changed, 595 insertions(+), 551 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.5.2 dated 2019-08-22 and 1.5.3 dated 2019-09-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pred.zoib.R | 52 +++++++++++++++++++++++++--------------------------- R/zoib.R | 7 +++++-- man/zoib-package.Rd | 4 ++-- 5 files changed, 40 insertions(+), 39 deletions(-)
Title: Quantile Regression Neural Network
Description: Fit quantile regression neural network models with optional
left censoring, partial monotonicity constraints, generalized additive
model constraints, and the ability to fit multiple non-crossing quantile
functions following Cannon (2011) <doi:10.1016/j.cageo.2010.07.005>
and Cannon (2018) <doi:10.1007/s00477-018-1573-6>.
Author: Alex J. Cannon [aut, cre] (<https://orcid.org/0000-0002-8025-3790>)
Maintainer: Alex J. Cannon <alex.cannon@canada.ca>
Diff between qrnn versions 2.0.4 dated 2019-06-13 and 2.0.5 dated 2019-09-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/qrnn2.R | 8 +++++--- man/qrnn-package.Rd | 23 +++++++++++++++++++++-- 4 files changed, 32 insertions(+), 11 deletions(-)
Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based language which provides a way for applications to define machine learning, statistical and data mining models and to share models between PMML compliant applications. More information about the PMML industry standard and the Data Mining Group can be found at <http://www.dmg.org>. The generated PMML can be imported into any PMML consuming application, such as Zementis Predictive Analytics products, which integrate with web services, relational database systems and deploy natively on Hadoop in conjunction with Hive, Spark or Storm, as well as allow predictive analytics to be executed for IBM z Systems mainframe applications and real-time, streaming analytics platforms. The package isofor (used for anomaly detection) can be installed with devtools::install_github("Zelazny7/isofor").
Author: Dmitriy Bolotov [aut, cre],
Tridivesh Jena [aut],
Graham Williams [aut],
Wen-Ching Lin [aut],
Michael Hahsler [aut],
Hemant Ishwaran [aut],
Udaya B. Kogalur [aut],
Rajarshi Guha [aut],
Software AG [cph]
Maintainer: Dmitriy Bolotov <rpmmlsupport@softwareag.com>
Diff between pmml versions 2.0.0 dated 2019-06-03 and 2.1.0 dated 2019-09-13
pmml-2.0.0/pmml/tests/testthat/test_AddAttributes.R |only pmml-2.0.0/pmml/tests/testthat/test_addDFChildren.R |only pmml-2.0.0/pmml/tests/testthat/test_addMSAttributes.R |only pmml-2.0.0/pmml/tests/testthat/test_addOutputField.R |only pmml-2.0.0/pmml/tests/testthat/test_functionToPMML.R |only pmml-2.0.0/pmml/tests/testthat/test_makeOutputNodes.R |only pmml-2.0.0/pmml/tests/testthat/test_savePMML.R |only pmml-2.1.0/pmml/DESCRIPTION | 19 pmml-2.1.0/pmml/MD5 | 200 ++++---- pmml-2.1.0/pmml/NAMESPACE | 2 pmml-2.1.0/pmml/NEWS.md | 129 +++++ pmml-2.1.0/pmml/R/add_attributes.R | 41 - pmml-2.1.0/pmml/R/add_data_field_attributes.R | 16 pmml-2.1.0/pmml/R/add_data_field_children.R | 14 pmml-2.1.0/pmml/R/add_mining_field_attributes.R | 8 pmml-2.1.0/pmml/R/add_output_field.R | 12 pmml-2.1.0/pmml/R/function_to_pmml.R | 12 pmml-2.1.0/pmml/R/make_intervals.R | 2 pmml-2.1.0/pmml/R/make_output_nodes.R | 22 pmml-2.1.0/pmml/R/make_values.R | 2 pmml-2.1.0/pmml/R/mining_schema.R | 49 ++ pmml-2.1.0/pmml/R/pmml.ARIMA.R |only pmml-2.1.0/pmml/R/pmml.R | 6 pmml-2.1.0/pmml/R/pmml.ada.R | 3 pmml-2.1.0/pmml/R/pmml.cv.glmnet.R | 5 pmml-2.1.0/pmml/R/pmml.gbm.R | 11 pmml-2.1.0/pmml/R/pmml.glm.R | 1 pmml-2.1.0/pmml/R/pmml.hclust.R | 4 pmml-2.1.0/pmml/R/pmml.iForest.R | 63 +- pmml-2.1.0/pmml/R/pmml.kmeans.R | 20 pmml-2.1.0/pmml/R/pmml.ksvm.R | 3 pmml-2.1.0/pmml/R/pmml.lm.R | 6 pmml-2.1.0/pmml/R/pmml.naiveBayes.R | 3 pmml-2.1.0/pmml/R/pmml.neighbr.R | 6 pmml-2.1.0/pmml/R/pmml.nnet.R | 3 pmml-2.1.0/pmml/R/pmml.randomForest.R | 7 pmml-2.1.0/pmml/R/pmml.rfsrc.R | 2 pmml-2.1.0/pmml/R/pmml.rpart.R | 3 pmml-2.1.0/pmml/R/pmml.svm.R | 144 +++--- pmml-2.1.0/pmml/R/pmml.xgb.Booster.R | 6 pmml-2.1.0/pmml/R/rename_wrap_var.R | 32 - pmml-2.1.0/pmml/R/save_pmml.R | 4 pmml-2.1.0/pmml/R/utils.R | 48 +- pmml-2.1.0/pmml/R/xform_discretize.R | 4 pmml-2.1.0/pmml/R/xform_map.R | 2 pmml-2.1.0/pmml/R/xform_min_max.R | 14 pmml-2.1.0/pmml/R/xform_norm_discrete.R | 232 +++++----- pmml-2.1.0/pmml/R/xform_wrap.R | 4 pmml-2.1.0/pmml/R/xform_z_score.R | 8 pmml-2.1.0/pmml/README.md | 7 pmml-2.1.0/pmml/build/vignette.rds |binary pmml-2.1.0/pmml/inst/WORDLIST |only pmml-2.1.0/pmml/inst/doc/packages_and_functions.Rmd | 42 - pmml-2.1.0/pmml/inst/doc/packages_and_functions.html | 48 +- pmml-2.1.0/pmml/inst/doc/xform_function.R | 4 pmml-2.1.0/pmml/inst/doc/xform_function.Rmd | 9 pmml-2.1.0/pmml/inst/doc/xform_function.html | 65 ++ pmml-2.1.0/pmml/man/add_attributes.Rd | 41 - pmml-2.1.0/pmml/man/add_data_field_attributes.Rd | 16 pmml-2.1.0/pmml/man/add_data_field_children.Rd | 14 pmml-2.1.0/pmml/man/add_mining_field_attributes.Rd | 8 pmml-2.1.0/pmml/man/add_output_field.Rd | 12 pmml-2.1.0/pmml/man/function_to_pmml.Rd | 12 pmml-2.1.0/pmml/man/make_intervals.Rd | 2 pmml-2.1.0/pmml/man/make_output_nodes.Rd | 22 pmml-2.1.0/pmml/man/make_values.Rd | 2 pmml-2.1.0/pmml/man/pmml-package.Rd | 3 pmml-2.1.0/pmml/man/pmml.ARIMA.Rd |only pmml-2.1.0/pmml/man/pmml.Rd | 6 pmml-2.1.0/pmml/man/pmml.ada.Rd | 3 pmml-2.1.0/pmml/man/pmml.cv.glmnet.Rd | 5 pmml-2.1.0/pmml/man/pmml.gbm.Rd | 5 pmml-2.1.0/pmml/man/pmml.glm.Rd | 1 pmml-2.1.0/pmml/man/pmml.hclust.Rd | 4 pmml-2.1.0/pmml/man/pmml.iForest.Rd | 15 pmml-2.1.0/pmml/man/pmml.kmeans.Rd | 9 pmml-2.1.0/pmml/man/pmml.ksvm.Rd | 3 pmml-2.1.0/pmml/man/pmml.lm.Rd | 7 pmml-2.1.0/pmml/man/pmml.naiveBayes.Rd | 3 pmml-2.1.0/pmml/man/pmml.neighbr.Rd | 4 pmml-2.1.0/pmml/man/pmml.nnet.Rd | 3 pmml-2.1.0/pmml/man/pmml.randomForest.Rd | 7 pmml-2.1.0/pmml/man/pmml.rfsrc.Rd | 2 pmml-2.1.0/pmml/man/pmml.rpart.Rd | 3 pmml-2.1.0/pmml/man/pmml.svm.Rd | 84 ++- pmml-2.1.0/pmml/man/pmml.xgb.Booster.Rd | 6 pmml-2.1.0/pmml/man/rename_wrap_var.Rd | 18 pmml-2.1.0/pmml/man/save_pmml.Rd | 4 pmml-2.1.0/pmml/man/xform_discretize.Rd | 4 pmml-2.1.0/pmml/man/xform_map.Rd | 2 pmml-2.1.0/pmml/man/xform_min_max.Rd | 14 pmml-2.1.0/pmml/man/xform_norm_discrete.Rd | 22 pmml-2.1.0/pmml/man/xform_wrap.Rd | 4 pmml-2.1.0/pmml/man/xform_z_score.Rd | 8 pmml-2.1.0/pmml/tests/testthat/pmml-4-4_xslt_20190830_10.5.0.0.xsd |only pmml-2.1.0/pmml/tests/testthat/test_add_attributes.R |only pmml-2.1.0/pmml/tests/testthat/test_add_data_field_children.R |only pmml-2.1.0/pmml/tests/testthat/test_add_mining_field_attributes.R |only pmml-2.1.0/pmml/tests/testthat/test_add_output_field.R |only pmml-2.1.0/pmml/tests/testthat/test_function_to_pmml.R |only pmml-2.1.0/pmml/tests/testthat/test_make_output_nodes.R |only pmml-2.1.0/pmml/tests/testthat/test_pmml.ARIMA.R |only pmml-2.1.0/pmml/tests/testthat/test_pmml.gbm.R |only pmml-2.1.0/pmml/tests/testthat/test_pmml.iForest.R | 3 pmml-2.1.0/pmml/tests/testthat/test_pmml.svm.R | 4 pmml-2.1.0/pmml/tests/testthat/test_presence_of_nodes.R | 2 pmml-2.1.0/pmml/tests/testthat/test_save_pmml.R |only pmml-2.1.0/pmml/tests/testthat/test_schema_validation.R | 77 ++- pmml-2.1.0/pmml/tests/testthat/test_transformations.R | 2 pmml-2.1.0/pmml/vignettes/packages_and_functions.Rmd | 42 - pmml-2.1.0/pmml/vignettes/xform_function.Rmd | 9 111 files changed, 1093 insertions(+), 771 deletions(-)
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with
the 'stringr' or 'stringi' packages. The foremost of these is the
extraction of numbers from strings. 'stringr' and 'stringi' make you
figure out the regular expression for yourself; 'strex' takes care of
this for you. There are many other handy functionalities in 'strex'.
Contributions to this package are encouraged: it is intended as a
miscellany of string manipulation functions that cannot be found in
'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 1.1.1 dated 2019-06-23 and 1.2.0 dated 2019-09-13
DESCRIPTION | 58 +++++++++++++++++++----------------- MD5 | 59 ++++++++++++++++++------------------- NEWS.md | 6 +++ R/after.R | 3 + R/all-equal.R | 6 ++- R/camel-case.R | 3 + R/extract-non-nums.R | 2 + R/extract-nums.R | 2 + R/locate.R | 23 ++++++++------ R/split-by-nums.R | 2 - R/trim.R | 4 +- README.md | 8 +++++ build/partial.rdb |binary build/vignette.rds |binary inst/CODE_OF_CONDUCT.md |only inst/doc/alphordering-numbers.html | 10 ++++-- inst/doc/argument-matching.html | 10 ++++-- inst/doc/before-and-after.html | 10 ++++-- inst/doc/important-miscellany.html | 10 ++++-- inst/doc/numbers-in-strings.html | 10 ++++-- man/before-and-after.Rd | 3 + man/str_extract_non_numerics.Rd | 1 man/str_extract_numbers.Rd | 1 man/str_locate_braces.Rd | 1 man/str_locate_nth.Rd | 9 +++-- man/str_nth_non_numeric.Rd | 1 man/str_nth_number.Rd | 1 man/str_split_by_numbers.Rd | 2 - man/str_split_camel_case.Rd | 3 + man/str_trim_anything.Rd | 2 + tests/testthat/test-trim.R | 6 ++- 31 files changed, 165 insertions(+), 91 deletions(-)
Title: Extract Features from Images
Description: Synthesize images into characteristic features for time-series analysis or machine learning applications. The package was originally intended for monitoring volcanic eruptions in video data by highlighting and extracting regions above the vent associated with plume activity. However, the functions within are general and have wide applications for image processing, analyzing, filtering, and plotting.
Author: Alex J.C. Witsil
Maintainer: Alex J.C. Witsil <alexjcwitsil@gmail.com>
Diff between imagefx versions 0.1.0 dated 2019-08-05 and 0.2.0 dated 2019-09-13
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++++++++------- R/build.gaus.r | 4 ++-- R/pcorr3d.r |only R/xcorr3d.r |only build/vignette.rds |binary data/datalist | 2 ++ data/tux1.RData |only data/tux2.RData |only inst/doc/extract_volcano_plume_tutorial.Rmd | 4 ++-- inst/doc/extract_volcano_plume_tutorial.html | 16 ++++++++-------- inst/doc/optical_flow_tutorial.R |only inst/doc/optical_flow_tutorial.Rmd |only inst/doc/optical_flow_tutorial.html |only man/pcorr3d.Rd |only man/tux1.Rd |only man/tux2.Rd |only man/xcorr3d.Rd |only vignettes/extract_volcano_plume_tutorial.Rmd | 4 ++-- vignettes/optical_flow_tutorial.Rmd |only 20 files changed, 40 insertions(+), 26 deletions(-)
Title: Interface to 'Interpretable AI' Modules
Description: An interface to the algorithms of 'Interpretable AI'
<https://www.interpretable.ai> from the R programming language.
'Interpretable AI' provides various modules, including 'Optimal Trees' for
classification, regression, prescription and survival analysis, 'Optimal
Imputation' for missing data imputation and outlier detection, and 'Optimal
Feature Selection' for exact sparse regression. The 'iai' package is an
open-source project. The 'Interpretable AI' software modules are proprietary
products, but free academic and evaluation licenses are available.
Author: Jack Dunn [aut, cre],
Ying Zhuo [aut],
Interpretable AI LLC [cph]
Maintainer: Jack Dunn <jack@interpretable.ai>
Diff between iai versions 1.0.0 dated 2019-07-18 and 1.1.0 dated 2019-09-13
DESCRIPTION | 11 - MD5 | 196 +++++++++++++------------- NAMESPACE | 11 + NEWS.md | 7 R/iaibase.R | 99 ++++--------- R/iaitrees.R | 186 ++++++++++++++---------- R/interface.R | 89 ++++++++++- R/optimalfeatureselection.R |only R/optimaltrees.R | 29 +-- R/optimpute.R | 18 -- R/utils.R | 4 inst/julia/convert.jl | 69 +++++++-- man/apply.Rd | 7 man/apply_nodes.Rd | 7 man/as.mixeddata.Rd | 6 man/clone.Rd | 5 man/decision_path.Rd | 7 man/delete_rich_output_param.Rd | 5 man/fit.Rd | 6 man/fit_cv.Rd | 6 man/fit_transform.Rd | 9 - man/fit_transform_cv.Rd | 8 - man/get_best_params.Rd | 5 man/get_classification_label.Rd | 5 man/get_classification_proba.Rd | 5 man/get_depth.Rd | 5 man/get_grid_results.Rd | 5 man/get_learner.Rd | 5 man/get_lower_child.Rd | 5 man/get_num_nodes.Rd | 5 man/get_num_samples.Rd | 5 man/get_params.Rd | 5 man/get_parent.Rd | 5 man/get_prediction_constant.Rd |only man/get_prediction_weights.Rd |only man/get_prescription_treatment_rank.Rd | 7 man/get_regression_constant.Rd | 5 man/get_regression_weights.Rd | 7 man/get_rich_output_params.Rd | 5 man/get_split_categories.Rd | 7 man/get_split_feature.Rd | 5 man/get_split_threshold.Rd | 5 man/get_split_weights.Rd | 7 man/get_survival_curve.Rd | 5 man/get_survival_curve_data.Rd | 10 - man/get_upper_child.Rd | 5 man/grid_search.Rd | 6 man/iai_setup.Rd | 5 man/imputation_learner.Rd | 5 man/impute.Rd | 6 man/impute_cv.Rd | 6 man/is_categoric_split.Rd | 5 man/is_hyperplane_split.Rd | 5 man/is_leaf.Rd | 5 man/is_mixed_ordinal_split.Rd | 5 man/is_mixed_parallel_split.Rd | 5 man/is_ordinal_split.Rd | 5 man/is_parallel_split.Rd | 5 man/mean_imputation_learner.Rd | 5 man/missing_goes_lower.Rd | 7 man/multi_questionnaire.Rd |only man/multi_tree_plot.Rd |only man/opt_knn_imputation_learner.Rd | 5 man/opt_svm_imputation_learner.Rd | 5 man/opt_tree_imputation_learner.Rd | 5 man/optimal_feature_selection_classifier.Rd |only man/optimal_feature_selection_regressor.Rd |only man/optimal_tree_classifier.Rd | 5 man/optimal_tree_prescription_maximizer.Rd | 7 man/optimal_tree_prescription_minimizer.Rd | 7 man/optimal_tree_regressor.Rd | 5 man/optimal_tree_survivor.Rd | 5 man/predict.Rd | 5 man/predict_outcomes.Rd | 7 man/predict_proba.Rd | 7 man/print_path.Rd | 5 man/questionnaire.Rd |only man/rand_imputation_learner.Rd | 5 man/read_json.Rd | 7 man/reset_display_label.Rd | 7 man/roc_curve.Rd | 5 man/score.Rd | 5 man/set_display_label.Rd | 5 man/set_julia_seed.Rd | 5 man/set_params.Rd | 5 man/set_rich_output_param.Rd | 5 man/set_threshold.Rd | 9 - man/show_in_browser.Rd | 7 man/show_questionnaire.Rd | 5 man/single_knn_imputation_learner.Rd | 5 man/split_data.Rd | 14 - man/transform.Rd | 5 man/tree_plot.Rd |only man/variable_importance.Rd | 7 man/write_dot.Rd | 7 man/write_html.Rd | 5 man/write_json.Rd | 11 - man/write_png.Rd | 5 man/write_questionnaire.Rd | 5 tests/testthat/test_iaibase.R | 72 ++++++--- tests/testthat/test_iaitrees.R | 67 +++++++- tests/testthat/test_optimalfeatureselection.R |only tests/testthat/test_optimaltrees.R | 16 +- tests/testthat/test_optimpute.R | 6 104 files changed, 654 insertions(+), 692 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and
individual-level relations in time series data from within a structural
equation modeling framework.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Adriene Beltz [csp]
Maintainer: KM Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.6-0 dated 2019-05-23 and 0.6-1 dated 2019-09-13
gimme-0.6-0/gimme/man/setupConvolve.Rd |only gimme-0.6-1/gimme/DESCRIPTION | 19 +++--- gimme-0.6-1/gimme/MD5 | 44 +++++++------- gimme-0.6-1/gimme/NAMESPACE | 1 gimme-0.6-1/gimme/R/aggSEM.R | 10 +-- gimme-0.6-1/gimme/R/final.org.R | 10 --- gimme-0.6-1/gimme/R/gimme-pkg.R | 8 +- gimme-0.6-1/gimme/R/gimme.R | 76 ++++++++++++++++++------- gimme-0.6-1/gimme/R/indSEM.R | 11 +-- gimme-0.6-1/gimme/R/sFIR.R | 10 ++- gimme-0.6-1/gimme/R/setup.R | 6 + gimme-0.6-1/gimme/R/setupConvolve.R | 26 ++++++-- gimme-0.6-1/gimme/R/setupPrelimDataChecks.R |only gimme-0.6-1/gimme/build/vignette.rds |binary gimme-0.6-1/gimme/data/ms.fit.rda |binary gimme-0.6-1/gimme/data/simData.rda |binary gimme-0.6-1/gimme/data/simDataLV.rda |binary gimme-0.6-1/gimme/data/ts.rda |binary gimme-0.6-1/gimme/inst/doc/gimme_vignette.html | 15 +++- gimme-0.6-1/gimme/man/aggSEM.Rd | 8 -- gimme-0.6-1/gimme/man/convolve.Rd |only gimme-0.6-1/gimme/man/gimme-package.Rd | 8 +- gimme-0.6-1/gimme/man/gimmeSEM.Rd | 17 +---- gimme-0.6-1/gimme/man/indSEM.Rd | 6 - gimme-0.6-1/gimme/man/setupPrelimDataChecks.Rd |only 25 files changed, 160 insertions(+), 115 deletions(-)
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureAuth versions 1.2.1 dated 2019-09-08 and 1.2.2 dated 2019-09-13
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/AzureAuth.R | 4 ++-- R/token.R | 18 +++++++----------- R/utils.R | 16 ++++++++++++++++ README.md | 2 +- 7 files changed, 40 insertions(+), 24 deletions(-)