Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
Raniere Silva [ctb],
Jozef Hajnala [ctb],
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.15 dated 2019-08-21 and 0.16 dated 2019-10-01
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 8 +++++++- R/clean.R | 17 ++++++++--------- tests/testit/test-clean.R |only tests/testit/test-utils.R | 2 +- 6 files changed, 24 insertions(+), 18 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.9 dated 2018-12-05 and 0.10 dated 2019-10-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 8 ++++++++ R/testit.R | 30 +++++++++++++----------------- README.md | 2 +- man/assert.Rd | 12 +++--------- man/test_pkg.Rd | 18 ++++++++++-------- 7 files changed, 44 insertions(+), 44 deletions(-)
Title: Softening Splits in Decision Trees
Description: Allows to produce and use classification trees with soft (probability) splits,
as described in: Dvořák, J. (2019), <doi:10.1007/s00180-019-00867-1>.
Author: Jakub Dvorak
Maintainer: Jakub Dvorak <JakubDvorak@email.cz>
Diff between SplitSoftening versions 1.0-0 dated 2018-09-19 and 2.0-0 dated 2019-10-01
DESCRIPTION | 10 ++- MD5 | 21 ++++--- NAMESPACE | 3 + R/SplitSoftening.R | 5 + R/bounds_by_esd.R |only R/convenience.R | 22 ++++---- R/sft_optim.R | 119 +++++++++++++++++++++++++-------------------- man/SplitSoftening.Rd | 5 + man/soften.Rd | 14 ++--- man/softening.by.esd.Rd |only man/softening.optimized.Rd | 11 +++- src/SplitSoftening_init.c | 5 + src/bound_by_esd.c |only 13 files changed, 133 insertions(+), 82 deletions(-)
More information about SplitSoftening at CRAN
Permanent link
Title: Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching
Description: Implements statistical inference for systems of ordinary differential equations,
that uses the integral-matching criterion and takes advantage of the separability of parameters,
in order to obtain initial parameter estimates for nonlinear least squares optimization.
Dattner & Yaari (2018) <arXiv:1807.04202>.
Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>.
Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.
Author: Itai Dattner [aut],
Rami Yaari [aut, cre]
Maintainer: Rami Yaari <ramiyaari@gmail.com>
Diff between simode versions 1.1.5 dated 2019-09-29 and 1.1.6 dated 2019-10-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/simode_fit.R | 5 ++--- inst/simode-manual.pdf |binary 4 files changed, 8 insertions(+), 9 deletions(-)
Title: Article Formats for R Markdown
Description: A suite of custom R Markdown formats and templates for
authoring journal articles and conference submissions.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
R Foundation [aut, cph],
Hadley Wickham [aut],
Journal of Statistical Software [aut, cph],
RStudio [cph],
Ramnath Vaidyanathan [aut, cph],
Association for Computing Machinery [aut, cph],
Carl Boettiger [aut, cph],
Elsevier [aut, cph],
Karl Broman [aut, cph],
Kirill Mueller [aut, cph],
Bastiaan Quast [aut, cph],
Randall Pruim [aut, cph],
Ben Marwick [aut, cph],
Charlotte Wickham [aut, cph],
Oliver Keyes [aut, cph],
Miao Yu [aut, cph],
Daniel Emaasit [aut, cph],
Thierry Onkelinx [aut, cph],
Alessandro Gasparini [aut, cph]
(<https://orcid.org/0000-0002-8319-7624>),
Marc-Andre Desautels [aut, cph],
Dominik Leutnant [aut, cph] (<https://orcid.org/0000-0003-3293-2315>),
MDPI [aut, cph],
Taylor and Francis [aut, cph],
Oğuzhan Öğreden [aut] (<https://orcid.org/0000-0002-9949-3348>),
Dalton Hance [aut],
Daniel Nüst [aut, cph] (<https://orcid.org/0000-0002-0024-5046>),
Petter Uvesten [aut, cph],
Elio Campitelli [aut, cph] (<https://orcid.org/0000-0002-7742-9230>),
John Muschelli [aut, cph] (<https://orcid.org/0000-0001-6469-1750>),
Zhian N. Kamvar [aut, cph] (<https://orcid.org/0000-0003-1458-7108>),
Noam Ross [aut, cph] (<https://orcid.org/0000-0002-2136-0000>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rticles versions 0.10 dated 2019-08-21 and 0.11 dated 2019-10-01
DESCRIPTION | 12 +++--- MD5 | 25 +++++++++----- NAMESPACE | 1 NEWS.md | 7 +++ R/ieee_article.R | 8 ++-- R/joss_article.R |only README.md | 2 + inst/rmarkdown/templates/joss_article |only inst/rmarkdown/templates/tf_article/skeleton/skeleton.Rmd | 11 ++---- man/ieee_article.Rd | 8 ++-- man/joss_article.Rd |only tests/testit/test-formats.R | 1 12 files changed, 48 insertions(+), 27 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Barret Schloerke [ctb],
Christophe Dervieux [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs),
Benct Philip Jonsson [ctb, cph] (pagebreak lua filter),
Albert Krewinkel [ctb, cph] (pagebreak lua filter)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 1.15 dated 2019-08-21 and 1.16 dated 2019-10-01
DESCRIPTION | 16 ++++++--- MD5 | 63 +++++++++++++++++++---------------- NAMESPACE | 2 - NEWS.md | 19 ++++++++++ R/beamer_presentation.R | 3 + R/github_document.R | 26 ++++++-------- R/html_document_base.R | 3 + R/html_vignette.R | 2 + R/md_document.R | 2 - R/odt_document.R | 3 + R/output_format.R | 67 ++++++++++++++++++++++---------------- R/pandoc.R | 25 ++++++++++---- R/pdf_document.R | 3 + R/render.R | 5 ++ R/shiny.R | 2 - R/shiny_prerendered.R | 15 ++++++-- R/word_document.R | 3 + build/vignette.rds |binary inst/doc/lua-filters.R |only inst/doc/lua-filters.Rmd |only inst/doc/lua-filters.html |only inst/doc/pandoc.R | 2 - inst/doc/rmarkdown.R | 2 - inst/rmd/lua |only man/all_output_formats.Rd | 10 ++++- man/beamer_presentation.Rd | 4 +- man/default_output_format.Rd | 10 ++++- man/github_document.Rd | 5 ++ man/html_vignette.Rd | 8 +++- man/md_document.Rd | 2 - man/render.Rd | 12 +++++- man/resolve_output_format.Rd | 10 ++++- man/rmarkdown_format.Rd | 1 tests/testthat/test-lua-filters.R |only vignettes/lua-filters.Rmd |only 35 files changed, 219 insertions(+), 106 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. From 'rgdal' 1.4.1, provision is made for 'PROJ6' accommodation, with 'PROJ6' functionality to follow; from 1.4.1 'rgdal' will build and function when 'PROJ' >= 6. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.4-4 dated 2019-05-29 and 1.4-6 dated 2019-10-01
ChangeLog | 43 +++++++++++++++++ DESCRIPTION | 13 ++--- LICENSE.note | 4 - MD5 | 41 ++++++++-------- R/ogr_write.R | 12 +++- build/vignette.rds |binary configure | 98 +++++++++++++++++++++------------------ configure.ac | 78 +++++++++++++++++-------------- inst/ChangeLog | 43 +++++++++++++++++ inst/README | 2 inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary inst/etc/obj_with_comments.RData |binary inst/etc/test_dfs.RData |binary inst/vectors/airports.gfs |only man/project.Rd | 2 man/spTransform-methods.Rd | 2 man/writeOGR.Rd | 3 - src/OGR_write.cpp | 4 + src/inverser.c | 1 tests/tripup.R | 21 ++++++++ tests/tripup.Rout.save | 55 ++++++++++++++++++++- 22 files changed, 305 insertions(+), 119 deletions(-)
Title: Capture Hi-C Analysis Engine
Description: Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
Author: Erle Holgersen [aut, cre],
Olivia Leavy [aut],
Olivia Fletcher [aut],
Frank Dudbridge [aut],
Syed Haider [aut]
Maintainer: Erle Holgersen <erle.holgersen@gmail.com>
Diff between chicane versions 0.1.0 dated 2018-08-30 and 0.1.1 dated 2019-10-01
DESCRIPTION | 22 +- MD5 | 52 +++- NAMESPACE | 8 NEWS | 6 R/chicane.R | 8 R/fit.model.R | 21 + R/make.modelfit.plot.R |only R/run.model.fitting.R | 19 + build/vignette.rds |binary inst/doc/Introduction.Rmd | 26 +- inst/doc/Introduction.html | 356 +++++++++++++-------------------- inst/doc/Visualising_Interactions.html | 146 ++++++++----- man/chicane.Rd | 9 man/fit.model.Rd | 9 man/make.modelfit.plot.Rd |only man/run.model.fitting.Rd | 6 vignettes/Introduction.Rmd | 26 +- vignettes/Introduction_cache |only 18 files changed, 388 insertions(+), 326 deletions(-)
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brüggemann [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.9 dated 2019-08-21 and 0.10 dated 2019-10-01
DESCRIPTION | 10 ++-- MD5 | 25 +++++----- NAMESPACE | 1 NEWS.md | 4 + R/data-structure.R | 31 +++++++++--- R/image.R |only R/markdown.R | 8 ++- inst/doc/xfun.R | 29 ++++++------ inst/doc/xfun.Rmd | 7 ++ inst/doc/xfun.html | 89 +++++++++++++++++++------------------ man/strict_list.Rd | 25 +++++++--- tests/testit/test-data-structure.R | 10 ++++ tests/testit/test-markdown.R | 22 +++++++++ vignettes/xfun.Rmd | 7 ++ 14 files changed, 177 insertions(+), 91 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", Zumel, Mount, 2016, <DOI:10.5281/zenodo.1173313>.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.4.6 dated 2019-09-23 and 1.4.7 dated 2019-10-01
DESCRIPTION | 12 +++++----- MD5 | 32 +++++++++++++-------------- NEWS.md | 8 ++++++ R/mult_class.R | 1 README.md | 45 ++++++++++++++++++++++++++++++++------ inst/doc/MultiClassVtreat.html | 4 +-- inst/doc/SavingTreamentPlans.html | 4 +-- inst/doc/VariableImportance.html | 10 ++++---- inst/doc/vtreat.html | 6 ++--- inst/doc/vtreatCrossFrames.html | 38 ++++++++++++++++---------------- inst/doc/vtreatGrouping.html | 4 +-- inst/doc/vtreatOverfit.html | 38 ++++++++++++++++---------------- inst/doc/vtreatRareLevels.html | 4 +-- inst/doc/vtreatScaleMode.html | 16 ++++++------- inst/doc/vtreatSignificance.html | 18 +++++++-------- inst/doc/vtreatSplitting.html | 4 +-- inst/doc/vtreatVariableTypes.html | 42 +++++++++++++++++------------------ 17 files changed, 163 insertions(+), 123 deletions(-)
Title: Formatting and Harmonizing Ecological Trait-Data
Description: Assistance for handling ecological trait data and applying the
Ecological Trait-Data Standard terminology (Schneider et al. 2019
<doi:10.1111/2041-210X.13288>). There are two major use cases: (1) preparation of
own trait datasets for upload into public data bases, and (2) harmonizing
trait datasets from different sources by re-formatting them into a unified
format. See 'traitdataform' website for full documentation.
Author: Florian D. Schneider [aut, cre]
(<https://orcid.org/0000-0002-1494-5684>),
Caterina Penone [ctb] (<https://orcid.org/0000-0002-8170-6659>),
Andreas Ostrowski [ctb] (<https://orcid.org/0000-0002-2033-779X>),
Dennis Heimann [ctb],
Felix Neff [ctb],
Markus J. Ankenbrand [ctb]
Maintainer: Florian D. Schneider <florian.dirk.schneider@gmail.com>
Diff between traitdataform versions 0.5.5 dated 2019-06-05 and 0.5.6 dated 2019-10-01
DESCRIPTION | 12 ++++++------ MD5 | 30 +++++++++++++++--------------- NEWS.md | 4 ++++ R/data.R | 2 +- README.md | 2 +- build/vignette.rds |binary inst/doc/traitdataform.R | 4 ++-- inst/doc/traitdataform.Rmd | 6 +++--- inst/doc/traitdataform.html | 12 ++++++++---- inst/extdata/arthropodtraits.R | 3 +-- inst/extdata/carabids.R | 2 +- inst/extdata/heteroptera_raw.R | 2 +- inst/extdata/mammaldiet.R | 2 +- man/mammaldiet.Rd | 2 +- tests/testthat/test.map_gbif_taxonomy.R | 8 ++++---- vignettes/traitdataform.Rmd | 6 +++--- 16 files changed, 52 insertions(+), 45 deletions(-)
Title: Tool-Kit for Dynamic Materials Model and Thermal Processing Maps
Description: Provides a simple approach for constructing dynamic materials
modeling suggested by Prasad and Gegel <doi:10.1007/BF02664902>. It
can easily generate various processing-maps based on this model as well. The
calculation result in this package contains full materials constants, information
about power dissipation efficiency factor, and rheological properties, can
be exported completely also, through which further analysis and customized
plots will be applicable as well.
Author: Chen ZHANG [aut, com, cre, cph],
Rui LUO [ctb],
Lingxiao OUYANG [ctb],
Huakang BIAN [ctb],
Kenta YAMANAKA [ctb],
Akihiko CHIBA [ctb]
Maintainer: Chen ZHANG <447974102@qq.com>
Diff between TPMplt versions 0.1.2 dated 2018-12-14 and 0.1.3 dated 2019-10-01
TPMplt-0.1.2/TPMplt/man/AllPF.Rd |only TPMplt-0.1.2/TPMplt/man/Dvec.Rd |only TPMplt-0.1.2/TPMplt/man/basicPF.Rd |only TPMplt-0.1.2/TPMplt/man/chrgen1.Rd |only TPMplt-0.1.2/TPMplt/man/chrgen2.Rd |only TPMplt-0.1.2/TPMplt/vignettes/img |only TPMplt-0.1.3/TPMplt/DESCRIPTION | 26 - TPMplt-0.1.3/TPMplt/MD5 | 45 - TPMplt-0.1.3/TPMplt/NAMESPACE | 9 TPMplt-0.1.3/TPMplt/R/DMMprocess.R | 63 -- TPMplt-0.1.3/TPMplt/R/TCorrect.R | 520 +++++++--------------- TPMplt-0.1.3/TPMplt/README.md | 55 +- TPMplt-0.1.3/TPMplt/inst/doc/TPMplt-vignette.R | 6 TPMplt-0.1.3/TPMplt/inst/doc/TPMplt-vignette.Rmd | 78 +-- TPMplt-0.1.3/TPMplt/inst/doc/TPMplt-vignette.html | 195 ++++---- TPMplt-0.1.3/TPMplt/man/DMMprocess.Rd | 8 TPMplt-0.1.3/TPMplt/man/KFprocess.Rd |only TPMplt-0.1.3/TPMplt/man/TCorrect.Rd | 59 +- TPMplt-0.1.3/TPMplt/man/T_get.Rd |only TPMplt-0.1.3/TPMplt/vignettes/TPMplt-vignette.Rmd | 78 +-- 20 files changed, 468 insertions(+), 674 deletions(-)
Title: Running Operations for Vectors
Description: Calculates running functions (a.k.a. windowed, rolling, cumulative)
with varying window size and missing handling options. Package brings also
running streak and running which, what extends beyond range of functions
already implemented in R packages. Calculating on windows depending on date also available.
Author: Dawid Kałędkowski [aut, cre]
Maintainer: Dawid Kałędkowski <dawid.kaledkowski@gmail.com>
Diff between runner versions 0.2.0 dated 2019-03-08 and 0.2.1 dated 2019-10-01
DESCRIPTION | 8 MD5 | 34 +- NAMESPACE | 1 NEWS.md | 3 R/RcppExports.R | 16 + README.md | 246 ++++++++++++-------- inst/doc/running_window_functions_in_r.R | 59 +++- inst/doc/running_window_functions_in_r.Rmd | 127 +++++++--- inst/doc/running_window_functions_in_r.html | 279 ++++++++++++++--------- man/runner.Rd |only src/RcppExports.cpp | 15 + src/runner.cpp |only src/runner.h |only src/which_run.cpp | 2 src/which_run.h | 2 src/window_run.h | 2 tests/testthat/test_runner.R |only vignettes/images/custom_runner.png |only vignettes/images/options_window_size_varying.png |binary vignettes/images/runner_api.png |only vignettes/running_window_functions_in_r.Rmd | 127 +++++++--- 21 files changed, 601 insertions(+), 320 deletions(-)
Title: Tools for Information-Based Feature Selection
Description: A toolbox of fast, native and parallel implementations of various information-based importance criteria estimators and feature selection filters based on them, inspired by the overview by Brown, Pocock, Zhao and Lujan (2012) <http://www.jmlr.org/papers/v13/brown12a.html>.
Contains, among other, minimum redundancy maximal relevancy ('mRMR') method by Peng, Long and Ding (2005) <doi:10.1109/TPAMI.2005.159>; joint mutual information ('JMI') method by Yang and Moody (1999) <http://papers.nips.cc/paper/1779-data-visualization-and-feature-selection-new-algorithms-for-nongaussian-data>; double input symmetrical relevance ('DISR') method by Meyer and Bontempi (2006) <doi:10.1007/11732242_9> as well as joint mutual information maximisation ('JMIM') method by Bennasar, Hicks and Setchi (2015) <doi:10.1016/j.eswa.2015.07.007>.
Author: Miron B. Kursa [aut, cre] (<https://orcid.org/0000-0001-7672-648X>)
Maintainer: Miron B. Kursa <m@mbq.me>
Diff between praznik versions 6.0.0 dated 2019-06-21 and 7.0.0 dated 2019-10-01
praznik-6.0.0/praznik/src/h.h |only praznik-6.0.0/praznik/src/im.h |only praznik-6.0.0/praznik/src/mi.h |only praznik-7.0.0/praznik/DESCRIPTION | 16 +- praznik-7.0.0/praznik/MD5 | 80 ++++++----- praznik-7.0.0/praznik/NAMESPACE | 7 praznik-7.0.0/praznik/R/algorithms.R | 84 +++++++---- praznik-7.0.0/praznik/R/praznik.R | 6 praznik-7.0.0/praznik/R/pure.R | 84 +++++------ praznik-7.0.0/praznik/R/scorers.R | 113 +++++++++++++--- praznik-7.0.0/praznik/inst/NEWS | 7 praznik-7.0.0/praznik/man/CMI.Rd |only praznik-7.0.0/praznik/man/CMIM.Rd | 11 - praznik-7.0.0/praznik/man/DISR.Rd | 10 - praznik-7.0.0/praznik/man/JIM.Rd | 8 - praznik-7.0.0/praznik/man/JMI.Rd | 10 - praznik-7.0.0/praznik/man/JMIM.Rd | 11 - praznik-7.0.0/praznik/man/MIM.Rd | 5 praznik-7.0.0/praznik/man/MRMR.Rd | 14 + praznik-7.0.0/praznik/man/MadelonD.Rd | 4 praznik-7.0.0/praznik/man/NJMIM.Rd | 11 - praznik-7.0.0/praznik/man/cmiMatrix.Rd |only praznik-7.0.0/praznik/man/cmiScores.Rd | 8 - praznik-7.0.0/praznik/man/dnmiMatrix.Rd |only praznik-7.0.0/praznik/man/hScores.Rd | 4 praznik-7.0.0/praznik/man/impScores.Rd | 4 praznik-7.0.0/praznik/man/jmiMatrix.Rd |only praznik-7.0.0/praznik/man/jmiScores.Rd | 6 praznik-7.0.0/praznik/man/miMatrix.Rd |only praznik-7.0.0/praznik/man/miScores.Rd | 4 praznik-7.0.0/praznik/man/njmiMatrix.Rd |only praznik-7.0.0/praznik/man/njmiScores.Rd | 6 praznik-7.0.0/praznik/man/nmiMatrix.Rd |only praznik-7.0.0/praznik/man/praznik-package.Rd | 5 praznik-7.0.0/praznik/src/cmi.h | 113 +++++++++------- praznik-7.0.0/praznik/src/cmim.h | 22 +-- praznik-7.0.0/praznik/src/cmis.h |only praznik-7.0.0/praznik/src/hs.h |only praznik-7.0.0/praznik/src/ht.h | 64 +++++---- praznik-7.0.0/praznik/src/ims.h |only praznik-7.0.0/praznik/src/jmis.h |only praznik-7.0.0/praznik/src/mis.h |only praznik-7.0.0/praznik/src/mrmr.h | 19 +- praznik-7.0.0/praznik/src/praznik.c | 24 ++- praznik-7.0.0/praznik/src/side.h | 24 --- praznik-7.0.0/praznik/tests/testthat/test-input.R | 10 - praznik-7.0.0/praznik/tests/testthat/test-madelon.R | 10 + praznik-7.0.0/praznik/tests/testthat/test-matrix.R |only praznik-7.0.0/praznik/tests/testthat/test-native-pure.R | 113 ++++++++++------ 49 files changed, 546 insertions(+), 371 deletions(-)
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with 'RStudio IDE', 'Emacs',
'Vim', 'Sublime Text' and 'Atom'.
Author: Jim Hester [aut, cre],
Florent Angly [aut]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 1.0.3 dated 2018-11-08 and 2.0.0 dated 2019-10-01
lintr-1.0.3/lintr/R/absolute_paths_linter.R |only lintr-1.0.3/lintr/R/commented_code_linter.R |only lintr-1.0.3/lintr/R/objects_linter.R |only lintr-1.0.3/lintr/tests/testthat/test-absolute_paths_linter.R |only lintr-1.0.3/lintr/tests/testthat/test-multiple_dots_linter.R |only lintr-1.0.3/lintr/tests/testthat/test-object_camel_case_linter.R |only lintr-1.0.3/lintr/tests/testthat/test-object_snake_case_linter.R |only lintr-2.0.0/lintr/DESCRIPTION | 43 + lintr-2.0.0/lintr/MD5 | 177 +++--- lintr-2.0.0/lintr/NAMESPACE | 32 + lintr-2.0.0/lintr/NEWS.md | 105 +++ lintr-2.0.0/lintr/R/T_and_F_symbol_linter.R |only lintr-2.0.0/lintr/R/aaa.R | 1 lintr-2.0.0/lintr/R/addins.R |only lintr-2.0.0/lintr/R/cache.R | 90 +-- lintr-2.0.0/lintr/R/closed_curly_linter.R | 15 lintr-2.0.0/lintr/R/commas_linter.R | 3 lintr-2.0.0/lintr/R/comment_linters.R |only lintr-2.0.0/lintr/R/comments.R | 4 lintr-2.0.0/lintr/R/cyclocomp_linter.R |only lintr-2.0.0/lintr/R/declared_functions.R |only lintr-2.0.0/lintr/R/deprecated.R |only lintr-2.0.0/lintr/R/equals_na_lintr.R |only lintr-2.0.0/lintr/R/exclude.R | 21 lintr-2.0.0/lintr/R/expect_lint.R | 146 ++-- lintr-2.0.0/lintr/R/extract.R | 60 +- lintr-2.0.0/lintr/R/extraction_operator_linter.R |only lintr-2.0.0/lintr/R/function_left_parentheses.R |only lintr-2.0.0/lintr/R/get_source_expressions.R | 94 ++- lintr-2.0.0/lintr/R/ids_with_token.R |only lintr-2.0.0/lintr/R/implicit_integer_linter.R |only lintr-2.0.0/lintr/R/infix_spaces_linter.R | 1 lintr-2.0.0/lintr/R/line_length_linter.R | 2 lintr-2.0.0/lintr/R/lint.R | 286 +++++++-- lintr-2.0.0/lintr/R/methods.R | 62 +- lintr-2.0.0/lintr/R/namespace.R |only lintr-2.0.0/lintr/R/no_tab_linter.R | 59 +- lintr-2.0.0/lintr/R/object_name_linters.R |only lintr-2.0.0/lintr/R/object_usage_linter.R | 155 +++-- lintr-2.0.0/lintr/R/open_curly_linter.R | 16 lintr-2.0.0/lintr/R/paren_brace_linter.R |only lintr-2.0.0/lintr/R/path_linters.R |only lintr-2.0.0/lintr/R/pipe_continuation_linter.R |only lintr-2.0.0/lintr/R/semicolon_terminator_linter.R |only lintr-2.0.0/lintr/R/seq_linter.R |only lintr-2.0.0/lintr/R/settings.R | 39 - lintr-2.0.0/lintr/R/single_quotes_linter.R | 2 lintr-2.0.0/lintr/R/spaces_inside_linter.R | 73 +- lintr-2.0.0/lintr/R/spaces_left_parentheses_linter.R | 2 lintr-2.0.0/lintr/R/tree-utils.R | 26 lintr-2.0.0/lintr/R/undesirable_function_linter.R |only lintr-2.0.0/lintr/R/undesirable_operator_linter.R |only lintr-2.0.0/lintr/R/unneeded_concatenation_linter.R |only lintr-2.0.0/lintr/R/utils.R | 73 +- lintr-2.0.0/lintr/R/with_id.R |only lintr-2.0.0/lintr/R/zzz.R | 172 ++++- lintr-2.0.0/lintr/README.md | 295 ++++++---- lintr-2.0.0/lintr/build/lintr.pdf |only lintr-2.0.0/lintr/build/vignette.rds |binary lintr-2.0.0/lintr/inst/doc/creating_linters.html | 37 + lintr-2.0.0/lintr/inst/example/complexity.R |only lintr-2.0.0/lintr/inst/rstudio |only lintr-2.0.0/lintr/man/Lint.Rd | 10 lintr-2.0.0/lintr/man/checkstyle_output.Rd |only lintr-2.0.0/lintr/man/clear_cache.Rd | 5 lintr-2.0.0/lintr/man/default_linters.Rd | 6 lintr-2.0.0/lintr/man/default_undesirable_functions.Rd |only lintr-2.0.0/lintr/man/expect_lint.Rd | 48 + lintr-2.0.0/lintr/man/ids_with_token.Rd |only lintr-2.0.0/lintr/man/lint_dir.Rd |only lintr-2.0.0/lintr/man/lint_file.Rd | 16 lintr-2.0.0/lintr/man/lint_package.Rd | 28 lintr-2.0.0/lintr/man/linters.Rd | 168 ++++- lintr-2.0.0/lintr/man/lintr-deprecated.Rd |only lintr-2.0.0/lintr/man/lintr.Rd | 2 lintr-2.0.0/lintr/man/read_settings.Rd | 5 lintr-2.0.0/lintr/man/with_defaults.Rd | 46 + lintr-2.0.0/lintr/tests/testthat/checkstyle.xml |only lintr-2.0.0/lintr/tests/testthat/knitr_formats/test.Rmd | 21 lintr-2.0.0/lintr/tests/testthat/lints |only lintr-2.0.0/lintr/tests/testthat/test-T_and_F_symbol_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-absolute_path_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-cache.R | 246 +++++--- lintr-2.0.0/lintr/tests/testthat/test-checkstyle_output.R |only lintr-2.0.0/lintr/tests/testthat/test-closed_curly_linter.R | 14 lintr-2.0.0/lintr/tests/testthat/test-commas_linter.R | 8 lintr-2.0.0/lintr/tests/testthat/test-commented_code_linter.R | 75 +- lintr-2.0.0/lintr/tests/testthat/test-comments.R | 6 lintr-2.0.0/lintr/tests/testthat/test-cyclocomp_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-defaults.R |only lintr-2.0.0/lintr/tests/testthat/test-deprecated.R |only lintr-2.0.0/lintr/tests/testthat/test-equals_na_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-exclusions.R | 89 ++- lintr-2.0.0/lintr/tests/testthat/test-expect_lint.R |only lintr-2.0.0/lintr/tests/testthat/test-extraction_operator_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-function_left_parentheses_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-get_source_expressions.R |only lintr-2.0.0/lintr/tests/testthat/test-implicit_integer_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-infix_spaces_linter.R | 2 lintr-2.0.0/lintr/tests/testthat/test-knitr_formats.R | 37 + lintr-2.0.0/lintr/tests/testthat/test-line_length_linter.R | 8 lintr-2.0.0/lintr/tests/testthat/test-methods.R | 71 ++ lintr-2.0.0/lintr/tests/testthat/test-no_tab_linter.R | 21 lintr-2.0.0/lintr/tests/testthat/test-nonportable_path_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-object_length_linter.R | 7 lintr-2.0.0/lintr/tests/testthat/test-object_name_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-object_usage_linter.R | 17 lintr-2.0.0/lintr/tests/testthat/test-open_curly_linter.R | 13 lintr-2.0.0/lintr/tests/testthat/test-paren_brace_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-pipe_continuation_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-semicolon_terminator_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-seq_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-settings.R | 16 lintr-2.0.0/lintr/tests/testthat/test-spaces_inside_linter.R | 21 lintr-2.0.0/lintr/tests/testthat/test-spaces_left_parentheses_linter.R | 14 lintr-2.0.0/lintr/tests/testthat/test-todo_comment_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-trailing_whitespace_linter.R | 10 lintr-2.0.0/lintr/tests/testthat/test-undesirable_function_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-undesirable_operator_linter.R |only lintr-2.0.0/lintr/tests/testthat/test-unneeded_concatenation_linter.R |only 120 files changed, 2250 insertions(+), 871 deletions(-)
Title: Graphical Lasso: Estimation of Gaussian Graphical Models
Description: Estimation of a sparse inverse covariance matrix using a lasso (L1)
penalty. Facilities are provided for estimates along a path of values
for the regularization parameter.
Author: Jerome Friedman, Trevor Hastie and Rob Tibshirani
Maintainer: Rob Tibshirani <tibs@stat.stanford.edu>
Diff between glasso versions 1.10 dated 2018-07-13 and 1.11 dated 2019-10-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/glasso.R | 8 +++++--- man/glasso.Rd | 4 +++- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.4.1 dated 2019-07-15 and 1.4.2 dated 2019-10-01
DESCRIPTION | 12 ++-- MD5 | 14 ++--- NAMESPACE | 2 NEWS.md | 3 + R/gtdd_get_yield_curve.R | 82 ++++++++++++++++++--------------- inst/doc/gtdd-vignette_GetTDData.html | 12 ++-- inst/doc/gtdd-vignette_YieldCurve.html | 4 - man/get.yield.curve.Rd | 2 8 files changed, 75 insertions(+), 56 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Aust Frederik [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Ellis Valentiner [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Noam Ross [ctb],
Peter Hickey [ctb],
Romain Lesur [ctb] (<https://orcid.org/0000-0002-0721-5595>),
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>),
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
Zeno Rocha [cph] (clipboard.js library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.13 dated 2019-08-21 and 0.14 dated 2019-10-01
DESCRIPTION | 12 +++++++++--- MD5 | 17 ++++++++++------- NAMESPACE | 1 + R/gitbook.R | 9 ++++++--- R/html.R | 1 + R/word.R | 6 ++++++ inst/resources/gitbook/css/plugin-clipboard.css |only inst/resources/gitbook/js/clipboard.min.js |only inst/resources/gitbook/js/plugin-clipboard.js |only man/bookdown-package.Rd | 3 +++ man/html_document2.Rd | 11 +++++++---- 11 files changed, 43 insertions(+), 17 deletions(-)
Title: Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis
Description: Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions
that help to create regression models for some genomic models proposed by Montesinos-López, et al. (2016) <doi:10.1534/g3.116.032359>
also in Montesinos-López et al. (2018) <doi:10.1534/g3.118.200728> and Montesinos-López et al. (2018) <doi:10.2134/agronj2018.06.0362>.
Author: Francisco Javier Luna-Vazquez [aut, cre]
(<https://orcid.org/0000-0002-5370-7152>),
Fernando H. Toledo [aut],
Osval Antonio Montesinos-Lopez [aut]
(<https://orcid.org/0000-0002-3973-6547>),
Abelardo Montesinos-Lopez [aut],
Jose Crossa [aut] (<https://orcid.org/0000-0001-9429-5855>)
Maintainer: Francisco Javier Luna-Vazquez <frahik@gmail.com>
Diff between BMTME versions 1.0.10 dated 2019-09-26 and 1.0.11 dated 2019-10-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 +++++++ src/Makevars | 6 ------ tests/testthat/Rplots.pdf |binary 5 files changed, 15 insertions(+), 14 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@coe.ufl.edu>
Diff between rscorecard versions 0.12.0 dated 2019-05-21 and 0.13.0 dated 2019-10-01
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/sysdata.rda |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Bjørn-Helge Mevik [aut, cre],
Ron Wehrens [aut],
Kristian Hovde Liland [aut],
Paul Hiemstra [ctb]
Maintainer: Bjørn-Helge Mevik <b-h@mevik.net>
Diff between pls versions 2.7-1 dated 2019-03-23 and 2.7-2 dated 2019-10-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/mvr.R | 6 ++++-- build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/pls-manual.pdf |binary tests/RUnit/common/runit.CV.R | 17 +++++++++++++++++ 7 files changed, 39 insertions(+), 12 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine
learning life cycle, see <https://mlflow.org/>. This package supports installing
'MLflow', tracking experiments, creating and running projects, and saving and
serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.2.0 dated 2019-08-19 and 1.3.0 dated 2019-10-01
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/tracking-rest.R | 47 ++++++++++++++++++++++-------------- R/tracking-runs.R | 5 ++- tests/testthat/test-rest.R | 47 ++++++++++++++++++++++++++++++++++++ tests/testthat/test-tracking-runs.R | 46 +++++++++++++++++++++++++++++++++++ 6 files changed, 134 insertions(+), 27 deletions(-)
Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 3.6-3 dated 2019-06-24 and 3.7 dated 2019-10-01
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS | 15 ++++++++++++++ configure | 1 configure.ac | 1 src/devEMF.cpp | 60 +++++++++++++++++++++++++++++++++++++++------------------ src/emf+.h | 19 +++++++++++++++++- 7 files changed, 85 insertions(+), 31 deletions(-)
Title: Calibration of Scatterplot and Biplot Axes
Description: Package for drawing calibrated scales with tick marks on (non-orthogonal)
variable vectors in scatterplots and biplots. Also provides some functions for multivariate analysis
such principal coordinate analysis.
Author: Jan Graffelman <jan.graffelman@upc.edu>
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between calibrate versions 1.7.2 dated 2013-09-10 and 1.7.5 dated 2019-10-01
DESCRIPTION | 13 +++++++------ MD5 | 29 +++++++++++++++++------------ NAMESPACE | 5 ++++- R/PrinCoor.R |only R/circle.R | 1 - build |only data/calves.rda |binary data/goblets.rda |binary data/heads.rda |binary data/linnerud.rda |binary data/spaindist.rda |only data/storks.rda |binary inst/doc/CalibrationGuide.R | 1 - inst/doc/CalibrationGuide.Rnw | 4 ++-- inst/doc/CalibrationGuide.pdf |binary man/PrinCoor.Rd |only man/spaindist.Rd |only vignettes/CalibrationGuide.Rnw | 4 ++-- 18 files changed, 32 insertions(+), 25 deletions(-)
Title: Helps Grade Assignment Submissions that are R Scripts
Description: After being given the location of your students' submissions and a test file, the function runs each .R file, and evaluates the results from all the given tests. Results are neatly returned in a data frame that has a row for each student, and a column for each test.
Author: Taylor Brown [aut, cre]
Maintainer: Taylor Brown <trb5me@virginia.edu>
Diff between gradeR versions 1.0.1 dated 2019-07-29 and 1.0.2 dated 2019-10-01
DESCRIPTION | 6 ++--- MD5 | 10 ++++----- NEWS.md | 9 +++++++- R/grade.r | 28 +++++++++++++++++++------ README.md | 43 +++++++++++++++++++++++++-------------- tests/testthat/test_calcGrades.r | 8 +++---- 6 files changed, 70 insertions(+), 34 deletions(-)
Title: White Matter Normalization for Magnetic Resonance Images using
WhiteStripe
Description: Shinohara (2014) <DOI:10.1016/j.nicl.2014.08.008>
introduced 'WhiteStripe', an intensity-based normalization of T1
and T2 images, where normal
appearing white matter performs well, but requires segmentation.
This method performs white matter mean and standard deviation
estimates on data that has been rigidly-registered to the 'MNI'
template and uses histogram-based methods.
Author: R. Taki Shinohara, John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between WhiteStripe versions 2.3.1 dated 2018-04-18 and 2.3.2 dated 2019-10-01
DESCRIPTION | 11 ++-- MD5 | 32 ++++++------ NEWS.md | 7 ++ R/download_img_data.R | 4 + R/t1.voi.R | 46 ++++------------- R/whitestripe_ind.R | 4 - build/vignette.rds |binary inst/doc/Running_WhiteStripe.html | 101 ++++++++++++++++++++++++-------------- man/get.first.mode.Rd | 4 - man/get.last.mode.Rd | 4 - man/s.hist.Rd | 4 - man/t1.voi.hist.Rd | 2 man/t2.voi.hist.Rd | 2 man/whitestripe.Rd | 4 - man/whitestripe_hybrid.Rd | 2 man/whitestripe_ind_to_mask.Rd | 2 man/xvals.Rd | 4 - 17 files changed, 124 insertions(+), 109 deletions(-)
Title: Robust Sparse Gaussian Graphical Modeling via the
Gamma-Divergence
Description: Robust estimation of sparse inverse covariance matrix via the gamma-divergence.
Author: Kei Hirose
Maintainer: Kei Hirose <mail@keihirose.com>
Diff between rsggm versions 0.3 dated 2015-08-21 and 0.3.1 dated 2019-10-01
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 3 ++- R/rsggm.R | 14 +++++++++++--- man/out.Rd | 7 ++++--- man/rsggm.Rd | 7 ++++--- 6 files changed, 31 insertions(+), 20 deletions(-)
Title: A Wrapper of the 'JavaScript' Library 'jExcel'
Description: An R interface to 'jExcel' library to create web-based interactive tables and spreadsheets compatible with 'Excel' or any other spreadsheet software.
Author: Swechhya Bista [aut, cre],
Kent Russell [ctb],
Mārcis Bratka [ctb]
Maintainer: Swechhya Bista <swechhyabista@gmail.com>
Diff between excelR versions 0.3.0 dated 2019-09-07 and 0.3.1 dated 2019-10-01
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 ++++++- R/excel_to_R.R | 14 ++++++++++++++ R/get_col_types.R | 25 ++++++++++++++++++++++++- R/jexcel.R | 4 +++- inst/htmlwidgets/jexcel.js | 15 +++++++++++++-- tests/testthat/test_autoColType.R | 11 +++++++++++ tests/testthat/test_data.R | 13 +++++++++++++ tests/testthat/test_excel_to_R.R | 13 +++++++++++++ tests/testthat/test_get_col_types.R | 6 +++--- 11 files changed, 113 insertions(+), 21 deletions(-)
Title: Statistical Models for Word Frequency Distributions
Description: Statistical models and utilities for the analysis of word frequency distributions.
The utilities include functions for loading, manipulating and visualizing word frequency
data and vocabulary growth curves. The package also implements several statistical
models for the distribution of word frequencies in a population. (The name of this package
derives from the most famous word frequency distribution, Zipf's law.)
Author: Stefan Evert <stefan.evert@fau.de>, Marco Baroni <marco.baroni@unitn.it>
Maintainer: Stefan Evert <stefan.evert@fau.de>
Diff between zipfR versions 0.6-10 dated 2017-08-17 and 0.6-66 dated 2019-10-01
DESCRIPTION | 8 - MD5 | 168 ++++++++++++++++-------------- NAMESPACE | 23 ++-- NEWS | 31 ++++- R/VV_lnre.R | 2 R/auto_gzfile.R | 20 ++- R/beta_gamma.R | 4 R/bootstrap_confint.R |only R/confint_lnre.R | 70 +----------- R/distribution.R | 2 R/distribution_lnre.R | 47 +++++++- R/distribution_lnre_fzm.R | 2 R/distribution_lnre_gigp.R | 4 R/distribution_lnre_zm.R | 2 R/estimate_model.R | 93 +++++++++++----- R/estimate_model_lnre_fzm.R | 7 - R/estimate_model_lnre_zm.R | 5 R/lnre.R | 37 ++++-- R/lnre_bootstrap.R | 48 +++++--- R/lnre_cost.R | 27 ++++ R/lnre_goodness_of_fit.R | 5 R/merge_tfl.R |only R/posterior.R | 8 - R/posterior_lnre.R | 32 ++--- R/productivity_measures.R |only R/productivity_measures_default.R |only R/productivity_measures_spc.R |only R/productivity_measures_tfl.R |only R/productivity_measures_vgc.R |only R/read_tfl.R | 2 R/tfl.R | 8 - R/write_tfl.R | 2 R/zzz_UTIL.R |only TODO | 29 ++++- build/vignette.rds |binary data/Baayen2001.rda |only data/Brown.emp.vgc.rda |binary data/Brown.spc.rda |binary data/Brown.tfl.rda |binary data/Brown100k.spc.rda |binary data/BrownAdj.emp.vgc.rda |binary data/BrownAdj.spc.rda |binary data/BrownImag.emp.vgc.rda |binary data/BrownImag.spc.rda |binary data/BrownInform.emp.vgc.rda |binary data/BrownInform.spc.rda |binary data/BrownNoun.emp.vgc.rda |binary data/BrownNoun.spc.rda |binary data/BrownVer.emp.vgc.rda |binary data/BrownVer.spc.rda |binary data/Dickens.emp.vgc.rda |binary data/Dickens.spc.rda |binary data/DickensGreatExpectations.emp.vgc.rda |binary data/DickensGreatExpectations.spc.rda |binary data/DickensOliverTwist.emp.vgc.rda |binary data/DickensOliverTwist.spc.rda |binary data/DickensOurMutualFriend.emp.vgc.rda |binary data/DickensOurMutualFriend.spc.rda |binary data/EvertLuedeling2001.rda |only data/ItaRi.emp.vgc.rda |binary data/ItaRi.spc.rda |binary data/ItaUltra.emp.vgc.rda |binary data/ItaUltra.spc.rda |binary data/TigerNP.emp.vgc.rda |binary data/TigerNP.spc.rda |binary data/TigerNP.tfl.rda |binary data/TigerPP.emp.vgc.rda |binary data/TigerPP.spc.rda |binary data/TigerPP.tfl.rda |binary inst/doc/zipfr-tutorial.R | 120 ++++++++++----------- inst/doc/zipfr-tutorial.Rnw | 15 +- inst/doc/zipfr-tutorial.pdf |binary man/Baayen2001.Rd |only man/EvertLuedeling2001.Rd |only man/bootstrap_confint.Rd |only man/confint_lnre.Rd | 47 +++++--- man/distribution.Rd | 37 ++++-- man/estimate_model.Rd | 7 + man/lnre.Rd | 86 +++++++++------ man/lnre_bootstrap.Rd | 78 +++++++++++-- man/merge_tfl.Rd |only man/posterior_distribution.Rd |only man/print_tfl.Rd | 9 - man/productivity_measures.Rd |only man/read_multiple_objects.Rd | 10 - man/read_write_spc.Rd | 40 +++---- man/read_write_tfl.Rd | 48 +++----- man/read_write_vgc.Rd | 25 +--- man/tfl.Rd | 5 man/vec2xxx.Rd | 22 +-- man/zipfR_package.Rd | 20 +-- man/zipfR_plotutils.Rd | 18 +-- vignettes/zipfr-tutorial.Rnw | 15 +- 93 files changed, 751 insertions(+), 537 deletions(-)
Title: R/Package Version Check
Description: Check latest release version of R and R package (both in 'CRAN', 'Bioconductor' or 'Github').
Author: Guangchuang Yu [aut, cre],
Chun-hui Gao [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between rvcheck versions 0.1.3 dated 2018-12-06 and 0.1.5 dated 2019-10-01
rvcheck-0.1.3/rvcheck/NEWS |only rvcheck-0.1.5/rvcheck/DESCRIPTION | 8 rvcheck-0.1.5/rvcheck/MD5 | 34 +- rvcheck-0.1.5/rvcheck/NAMESPACE | 43 +-- rvcheck-0.1.5/rvcheck/NEWS.md |only rvcheck-0.1.5/rvcheck/R/check_pkg.R | 295 +++++++++++++------------- rvcheck-0.1.5/rvcheck/R/check_r.R | 88 ++++--- rvcheck-0.1.5/rvcheck/R/update_all.R | 228 ++++++++++---------- rvcheck-0.1.5/rvcheck/R/utilities.R | 153 ++++++------- rvcheck-0.1.5/rvcheck/man/check_bioc.Rd | 52 ++-- rvcheck-0.1.5/rvcheck/man/check_cran.Rd | 52 ++-- rvcheck-0.1.5/rvcheck/man/check_github.Rd | 52 ++-- rvcheck-0.1.5/rvcheck/man/check_gitlab.Rd | 40 +-- rvcheck-0.1.5/rvcheck/man/check_r.Rd | 46 ++-- rvcheck-0.1.5/rvcheck/man/get_aes_var.Rd | 44 +-- rvcheck-0.1.5/rvcheck/man/get_fun_from_pkg.Rd | 44 +-- rvcheck-0.1.5/rvcheck/man/o.Rd | 31 +- rvcheck-0.1.5/rvcheck/man/read.cb.Rd | 40 +-- rvcheck-0.1.5/rvcheck/man/update_all.Rd | 50 ++-- 19 files changed, 666 insertions(+), 634 deletions(-)
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Romain Lesur [aut, cph] (<https://orcid.org/0000-0002-0721-5595>),
Brent Thorne [aut] (<https://orcid.org/0000-0002-1099-3857>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
RStudio, Inc. [cph],
Adam Hyde [ctb] (paged.js in resources/js/),
Min-Zhong Lu [ctb] (resume.css in resources/css/),
Zulko [ctb] (poster-relaxed.css in resources/css/)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.4 dated 2019-08-21 and 0.5 dated 2019-10-01
DESCRIPTION | 6 - MD5 | 27 +++--- NEWS.md | 16 +++ R/card.R | 5 - R/chrome.R | 34 ++++++- R/paged.R | 65 +++++++++++++-- inst/resources/css/default-page.css | 27 ++++++ inst/resources/css/default.css | 8 + inst/resources/css/letter.css | 2 inst/resources/css/thesis.css | 2 inst/resources/js/config.js | 54 +++++++++++- inst/resources/js/hooks.js | 155 ++++++++++++++++++++++++++++++++++++ inst/resources/js/paged-latest.js |only man/business_card.Rd | 5 - man/html_paged.Rd | 16 +++ 15 files changed, 376 insertions(+), 46 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.8.0 dated 2019-05-05 and 0.8.1 dated 2019-10-01
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS | 8 ++++++++ R/BatchtoolsFuture-class.R | 3 ++- R/future_cache_path.R | 23 ++++++++++++----------- R/resources_OP.R | 2 +- R/zzz.R | 7 +++++++ build/vignette.rds |binary inst/doc/future.batchtools.html | 25 ++++++++++++++++++------- inst/doc/future.batchtools.md.rsp | 23 +++++++++++++++++------ tests/BatchtoolsFuture.R | 8 -------- tests/future,lazy.R | 14 ++++++++++++-- tests/incl/start,load-only.R | 2 ++ vignettes/future.batchtools.md.rsp | 23 +++++++++++++++++------ 14 files changed, 113 insertions(+), 59 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <myeomans@hbs.edu>
Diff between politeness versions 0.3.2 dated 2019-07-02 and 0.3.3 dated 2019-10-01
DESCRIPTION | 6 +- MD5 | 10 ++-- R/politenessPlot.R | 21 +++++++- R/politenessProjection.R | 111 ++++++++++++++++++++++++----------------------- inst/doc/politeness.html | 12 ++--- man/politenessPlot.Rd | 2 6 files changed, 89 insertions(+), 73 deletions(-)
Title: Pin, Discover and Share Resources
Description: Pin remote resources into a local cache to work offline,
improve speed and avoid recomputing; discover and share resources
in local folders, 'GitHub', 'Kaggle' or 'RStudio Connect'. Resources can
be anything from 'CSV', 'JSON', or image files to arbitrary R objects.
Author: Javier Luraschi [aut, cre],
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between pins versions 0.1.2 dated 2019-09-04 and 0.2.0 dated 2019-10-01
pins-0.1.2/pins/man/pin_load.Rd |only pins-0.1.2/pins/man/pin_preview.Rd |only pins-0.1.2/pins/tools/readme/rstudio-pin-performance-1.png |only pins-0.2.0/pins/DESCRIPTION | 9 pins-0.2.0/pins/MD5 | 102 ++-- pins-0.2.0/pins/NAMESPACE | 1 pins-0.2.0/pins/NEWS.md | 53 ++ pins-0.2.0/pins/R/board.R | 32 + pins-0.2.0/pins/R/board_datatxt.R | 13 pins-0.2.0/pins/R/board_extensions.R | 2 pins-0.2.0/pins/R/board_github.R | 44 -- pins-0.2.0/pins/R/board_packages.R | 3 pins-0.2.0/pins/R/board_registration.R | 44 +- pins-0.2.0/pins/R/board_registry.R | 11 pins-0.2.0/pins/R/board_rsconnect.R | 38 + pins-0.2.0/pins/R/board_rsconnect_bundle.R | 10 pins-0.2.0/pins/R/board_rsconnect_token.R | 5 pins-0.2.0/pins/R/board_test.R | 2 pins-0.2.0/pins/R/pin.R | 49 +- pins-0.2.0/pins/R/pin_extensions.R | 2 pins-0.2.0/pins/R/pin_file.R | 3 pins-0.2.0/pins/README.md | 276 +++++-------- pins-0.2.0/pins/data/cranfiles.rda |binary pins-0.2.0/pins/inst/doc/boards-github.Rmd | 12 pins-0.2.0/pins/inst/doc/boards-github.html | 9 pins-0.2.0/pins/inst/doc/boards-understanding.Rmd | 8 pins-0.2.0/pins/inst/doc/boards-understanding.html | 7 pins-0.2.0/pins/inst/doc/pins-extending.R | 6 pins-0.2.0/pins/inst/doc/pins-extending.Rmd | 8 pins-0.2.0/pins/inst/doc/pins-extending.html | 9 pins-0.2.0/pins/inst/doc/pins-starting.R | 14 pins-0.2.0/pins/inst/doc/pins-starting.Rmd | 89 +++- pins-0.2.0/pins/inst/doc/pins-starting.html | 101 ++-- pins-0.2.0/pins/man/board_cache_path.Rd |only pins-0.2.0/pins/man/board_default.Rd | 7 pins-0.2.0/pins/man/board_register.Rd | 6 pins-0.2.0/pins/man/board_register_datatxt.Rd | 4 pins-0.2.0/pins/man/board_register_github.Rd | 14 pins-0.2.0/pins/man/board_register_kaggle.Rd | 4 pins-0.2.0/pins/man/board_register_local.Rd | 4 pins-0.2.0/pins/man/board_register_rsconnect.Rd | 4 pins-0.2.0/pins/man/custom-pins.Rd | 15 pins-0.2.0/pins/man/pin.Rd | 3 pins-0.2.0/pins/man/pin_get.Rd | 3 pins-0.2.0/pins/man/pin_remove.Rd | 7 pins-0.2.0/pins/tests/testthat/helper-initialize.R | 12 pins-0.2.0/pins/tests/testthat/test-aaa-check.R |only pins-0.2.0/pins/tests/testthat/test-board-github.R | 12 pins-0.2.0/pins/tests/testthat/test-zzz-check.R | 8 pins-0.2.0/pins/tools/readme/rstudio-plot-pin-1.png |binary pins-0.2.0/pins/vignettes/boards-github.Rmd | 12 pins-0.2.0/pins/vignettes/boards-understanding.Rmd | 8 pins-0.2.0/pins/vignettes/images/boards-github-release.png |only pins-0.2.0/pins/vignettes/pins-extending.Rmd | 8 pins-0.2.0/pins/vignettes/pins-starting.Rmd | 89 +++- 55 files changed, 717 insertions(+), 465 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Simulation tools for management strategy evaluation are provided for the 'DLMtool' operating model to inform data-rich fisheries.
'MSEtool' provides complementary assessment models of varying complexity with standardized reporting, diagnostic tools for evaluating
assessment models within closed-loop simulation, and helper functions for building more complex operating models and management procedures.
Author: Quang Huynh [aut],
Tom Carruthers [aut, cre],
Adrian Hordyk [aut],
Chris Grandin [ctb] (iSCAM functions)
Maintainer: Tom Carruthers <t.carruthers@oceans.ubc.ca>
Diff between MSEtool versions 1.2.1 dated 2019-07-29 and 1.3.0 dated 2019-10-01
MSEtool-1.2.1/MSEtool/R/DD.R |only MSEtool-1.2.1/MSEtool/R/MPs.R |only MSEtool-1.2.1/MSEtool/R/Misc_exported.R |only MSEtool-1.2.1/MSEtool/R/SCA.R |only MSEtool-1.2.1/MSEtool/R/SCA2.R |only MSEtool-1.2.1/MSEtool/R/SCA_Pope.R |only MSEtool-1.2.1/MSEtool/R/SP.R |only MSEtool-1.2.1/MSEtool/R/VPA.R |only MSEtool-1.2.1/MSEtool/R/cDD.R |only MSEtool-1.3.0/MSEtool/DESCRIPTION | 12 MSEtool-1.3.0/MSEtool/MD5 | 130 +-- MSEtool-1.3.0/MSEtool/NAMESPACE | 5 MSEtool-1.3.0/MSEtool/NEWS.md | 21 MSEtool-1.3.0/MSEtool/R/MSEtool-package.R | 30 MSEtool-1.3.0/MSEtool/R/Misc_fun.R | 86 ++ MSEtool-1.3.0/MSEtool/R/SRA_scope.R | 560 +++++++------- MSEtool-1.3.0/MSEtool/R/SRA_scope_data.R |only MSEtool-1.3.0/MSEtool/R/SRA_scope_rmd.R |only MSEtool-1.3.0/MSEtool/R/SS2Data.R | 38 - MSEtool-1.3.0/MSEtool/R/SS2OM.R | 20 MSEtool-1.3.0/MSEtool/R/assess_DD.R |only MSEtool-1.3.0/MSEtool/R/assess_SCA.R |only MSEtool-1.3.0/MSEtool/R/assess_SCA2.R |only MSEtool-1.3.0/MSEtool/R/assess_SCA_Pope.R |only MSEtool-1.3.0/MSEtool/R/assess_SP.R |only MSEtool-1.3.0/MSEtool/R/assess_VPA.R |only MSEtool-1.3.0/MSEtool/R/assess_cDD.R |only MSEtool-1.3.0/MSEtool/R/define_S4_class_SRA.R |only MSEtool-1.3.0/MSEtool/R/define_S4_class_assess.R | 9 MSEtool-1.3.0/MSEtool/R/diagnostic_AM.R | 27 MSEtool-1.3.0/MSEtool/R/multiMSE.R | 16 MSEtool-1.3.0/MSEtool/R/multiMSE_internal.R | 11 MSEtool-1.3.0/MSEtool/R/report_DD_TMB.R | 2 MSEtool-1.3.0/MSEtool/R/report_auxiliary.R | 23 MSEtool-1.3.0/MSEtool/R/report_spict.R | 40 - MSEtool-1.3.0/MSEtool/R/rmd_report.R | 23 MSEtool-1.3.0/MSEtool/R/z_MPs.R |only MSEtool-1.3.0/MSEtool/README.md | 5 MSEtool-1.3.0/MSEtool/inst/doc/Delay_difference.html | 43 - MSEtool-1.3.0/MSEtool/inst/doc/MSEtool.html | 119 +-- MSEtool-1.3.0/MSEtool/inst/doc/SCA.html | 41 - MSEtool-1.3.0/MSEtool/inst/doc/Surplus_production.Rmd | 40 + MSEtool-1.3.0/MSEtool/inst/doc/Surplus_production.html | 61 + MSEtool-1.3.0/MSEtool/inst/doc/VPA.html | 41 - MSEtool-1.3.0/MSEtool/inst/doc/multiMSE.html | 639 ++++++++--------- MSEtool-1.3.0/MSEtool/inst/include/SCA.h | 49 - MSEtool-1.3.0/MSEtool/inst/include/SCA2.h | 27 MSEtool-1.3.0/MSEtool/inst/include/SCA_Pope.h | 53 - MSEtool-1.3.0/MSEtool/inst/include/SP.h | 16 MSEtool-1.3.0/MSEtool/inst/include/SP_SS.h | 16 MSEtool-1.3.0/MSEtool/inst/include/SRA_scope.h | 202 ++--- MSEtool-1.3.0/MSEtool/inst/include/VPA.h | 3 MSEtool-1.3.0/MSEtool/inst/include/cDD.h | 20 MSEtool-1.3.0/MSEtool/inst/include/cDD_SS.h | 26 MSEtool-1.3.0/MSEtool/inst/include/functions.h | 7 MSEtool-1.3.0/MSEtool/inst/include/ns/ns_SCA.h | 19 MSEtool-1.3.0/MSEtool/inst/include/ns/ns_SRA_scope.h | 79 -- MSEtool-1.3.0/MSEtool/inst/include/ns/ns_VPA.h | 4 MSEtool-1.3.0/MSEtool/inst/include/ns/ns_cDD.h | 12 MSEtool-1.3.0/MSEtool/man/DD_TMB.Rd | 6 MSEtool-1.3.0/MSEtool/man/Data-rich-MP.Rd | 23 MSEtool-1.3.0/MSEtool/man/MSEtool-package.Rd | 26 MSEtool-1.3.0/MSEtool/man/SCA.Rd | 21 MSEtool-1.3.0/MSEtool/man/SP.Rd | 63 + MSEtool-1.3.0/MSEtool/man/SRA-class.Rd |only MSEtool-1.3.0/MSEtool/man/SRA_scope.Rd | 78 +- MSEtool-1.3.0/MSEtool/man/SS2Data.Rd | 8 MSEtool-1.3.0/MSEtool/man/SS2OM.Rd | 5 MSEtool-1.3.0/MSEtool/man/VPA.Rd | 2 MSEtool-1.3.0/MSEtool/man/avail.Rd | 4 MSEtool-1.3.0/MSEtool/man/cDD.Rd | 16 MSEtool-1.3.0/MSEtool/man/diagnostic_AM.Rd | 2 MSEtool-1.3.0/MSEtool/man/make_MP.Rd | 2 MSEtool-1.3.0/MSEtool/man/plot.SRA.Rd |only MSEtool-1.3.0/MSEtool/man/prelim_AM.Rd | 2 MSEtool-1.3.0/MSEtool/man/userguide.Rd | 2 MSEtool-1.3.0/MSEtool/vignettes/Surplus_production.Rmd | 40 + 77 files changed, 1649 insertions(+), 1226 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that cannot be directly estimated from the data). These tools can be used to define objects for creating, simulating, or validating values for such parameters.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between dials versions 0.0.2 dated 2018-12-09 and 0.0.3 dated 2019-10-01
dials-0.0.2/dials/R/dplyr-compat.R |only dials-0.0.2/dials/R/merge.R |only dials-0.0.2/dials/R/parameters.R |only dials-0.0.2/dials/inst/parsnip |only dials-0.0.2/dials/man/merge.model_spec.Rd |only dials-0.0.2/dials/man/misc_parameters.Rd |only dials-0.0.2/dials/man/new_quant_param.Rd |only dials-0.0.2/dials/man/para_parameters.Rd |only dials-0.0.2/dials/man/text_parameters.Rd |only dials-0.0.2/dials/man/tree_parameters.Rd |only dials-0.0.2/dials/tests/testthat/test_dplyr.R |only dials-0.0.2/dials/vignettes/articles |only dials-0.0.3/dials/DESCRIPTION | 14 dials-0.0.3/dials/MD5 | 166 +++++- dials-0.0.3/dials/NAMESPACE | 71 ++ dials-0.0.3/dials/NEWS.md | 32 + dials-0.0.3/dials/R/0_imports.R |only dials-0.0.3/dials/R/aaa.R | 54 +- dials-0.0.3/dials/R/aaa_ranges.R | 69 +- dials-0.0.3/dials/R/aaa_unknown.R | 56 +- dials-0.0.3/dials/R/aaa_values.R | 160 +++--- dials-0.0.3/dials/R/constructors.R | 134 +++-- dials-0.0.3/dials/R/data.R |only dials-0.0.3/dials/R/dials-package.R |only dials-0.0.3/dials/R/dplyr-compat-grid.R |only dials-0.0.3/dials/R/dplyr-compat-set.R |only dials-0.0.3/dials/R/encode_unit.R |only dials-0.0.3/dials/R/finalize.R | 184 ++++--- dials-0.0.3/dials/R/grids.R | 182 +++++-- dials-0.0.3/dials/R/misc.R | 11 dials-0.0.3/dials/R/param_Laplace.R |only dials-0.0.3/dials/R/param_activation.R |only dials-0.0.3/dials/R/param_deg_free.R |only dials-0.0.3/dials/R/param_degree.R |only dials-0.0.3/dials/R/param_dist_power.R |only dials-0.0.3/dials/R/param_kernel.R |only dials-0.0.3/dials/R/param_learn_rate.R |only dials-0.0.3/dials/R/param_max_times.R |only dials-0.0.3/dials/R/param_max_tokens.R |only dials-0.0.3/dials/R/param_min_dist.R |only dials-0.0.3/dials/R/param_min_unique.R |only dials-0.0.3/dials/R/param_mixture.R |only dials-0.0.3/dials/R/param_mtry.R |only dials-0.0.3/dials/R/param_neighbors.R |only dials-0.0.3/dials/R/param_network.R |only dials-0.0.3/dials/R/param_num_breaks.R |only dials-0.0.3/dials/R/param_num_comp.R |only dials-0.0.3/dials/R/param_num_hash.R |only dials-0.0.3/dials/R/param_nzv.R |only dials-0.0.3/dials/R/param_over_ratio.R |only dials-0.0.3/dials/R/param_penalty.R |only dials-0.0.3/dials/R/param_prune_method.R |only dials-0.0.3/dials/R/param_set.R |only dials-0.0.3/dials/R/param_surv_dist.R |only dials-0.0.3/dials/R/param_svm.R |only dials-0.0.3/dials/R/param_threshold.R |only dials-0.0.3/dials/R/param_token.R |only dials-0.0.3/dials/R/param_trees.R |only dials-0.0.3/dials/R/param_weight.R |only dials-0.0.3/dials/R/param_weight_func.R |only dials-0.0.3/dials/R/param_weight_scheme.R |only dials-0.0.3/dials/R/param_window_size.R |only dials-0.0.3/dials/R/space_filling.R |only dials-0.0.3/dials/R/type_sum.R | 23 dials-0.0.3/dials/R/validation.R |only dials-0.0.3/dials/README.md | 36 + dials-0.0.3/dials/build/vignette.rds |binary dials-0.0.3/dials/data |only dials-0.0.3/dials/inst/doc/Basics.R | 59 +- dials-0.0.3/dials/inst/doc/Basics.Rmd | 86 ++- dials-0.0.3/dials/inst/doc/Basics.html | 239 ++++++---- dials-0.0.3/dials/man/Chicago.Rd |only dials-0.0.3/dials/man/Laplace.Rd |only dials-0.0.3/dials/man/activation.Rd |only dials-0.0.3/dials/man/cost.Rd |only dials-0.0.3/dials/man/deg_free.Rd |only dials-0.0.3/dials/man/degree.Rd |only dials-0.0.3/dials/man/dials-package.Rd |only dials-0.0.3/dials/man/dist_power.Rd |only dials-0.0.3/dials/man/dropout.Rd |only dials-0.0.3/dials/man/encode_unit.Rd |only dials-0.0.3/dials/man/figures |only dials-0.0.3/dials/man/finalize.Rd | 71 +- dials-0.0.3/dials/man/freq_cut.Rd |only dials-0.0.3/dials/man/grid_max_entropy.Rd |only dials-0.0.3/dials/man/grid_regular.Rd | 59 +- dials-0.0.3/dials/man/learn_rate.Rd |only dials-0.0.3/dials/man/max_times.Rd |only dials-0.0.3/dials/man/max_tokens.Rd |only dials-0.0.3/dials/man/min_dist.Rd |only dials-0.0.3/dials/man/min_unique.Rd |only dials-0.0.3/dials/man/mixture.Rd |only dials-0.0.3/dials/man/mtry.Rd |only dials-0.0.3/dials/man/neighbors.Rd |only dials-0.0.3/dials/man/new-param.Rd |only dials-0.0.3/dials/man/num_breaks.Rd |only dials-0.0.3/dials/man/num_comp.Rd |only dials-0.0.3/dials/man/over_ratio.Rd |only dials-0.0.3/dials/man/param_set.Rd |only dials-0.0.3/dials/man/param_set_constr.Rd |only dials-0.0.3/dials/man/penalty.Rd |only dials-0.0.3/dials/man/prune_method.Rd |only dials-0.0.3/dials/man/range_validate.Rd | 39 + dials-0.0.3/dials/man/rbf_sigma.Rd |only dials-0.0.3/dials/man/surv_dist.Rd |only dials-0.0.3/dials/man/texthash.Rd |only dials-0.0.3/dials/man/threshold.Rd |only dials-0.0.3/dials/man/token.Rd |only dials-0.0.3/dials/man/trees.Rd |only dials-0.0.3/dials/man/type_sum.param.Rd | 2 dials-0.0.3/dials/man/unknown.Rd | 38 + dials-0.0.3/dials/man/update.param_set.Rd |only dials-0.0.3/dials/man/value_validate.Rd | 53 +- dials-0.0.3/dials/man/weight.Rd |only dials-0.0.3/dials/man/weight_func.Rd |only dials-0.0.3/dials/man/weight_scheme.Rd |only dials-0.0.3/dials/man/window_size.Rd |only dials-0.0.3/dials/tests/testthat.R | 6 dials-0.0.3/dials/tests/testthat/helper-skip_if_below_r_version.R |only dials-0.0.3/dials/tests/testthat/test_construction.R | 29 - dials-0.0.3/dials/tests/testthat/test_dplyr_grid_compat.R |only dials-0.0.3/dials/tests/testthat/test_dplyr_set_compat.R |only dials-0.0.3/dials/tests/testthat/test_encode_unit.R |only dials-0.0.3/dials/tests/testthat/test_finalize.R | 52 +- dials-0.0.3/dials/tests/testthat/test_grid.R | 18 dials-0.0.3/dials/tests/testthat/test_misc.R |only dials-0.0.3/dials/tests/testthat/test_param_set.R |only dials-0.0.3/dials/tests/testthat/test_parameters.R |only dials-0.0.3/dials/tests/testthat/test_printing.R | 6 dials-0.0.3/dials/tests/testthat/test_ranges.R | 24 - dials-0.0.3/dials/tests/testthat/test_space_filling.R |only dials-0.0.3/dials/tests/testthat/test_unknowns.R | 10 dials-0.0.3/dials/tests/testthat/test_values.R | 158 +++--- dials-0.0.3/dials/vignettes/Basics.Rmd | 86 ++- 134 files changed, 1437 insertions(+), 790 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-16 0.2.1
2019-06-05 0.2.0
2019-05-11 0.1.4
2019-03-20 0.1.3
2019-01-09 0.1.2
2018-10-24 0.1.1
2017-10-30 0.0.3
2017-10-27 0.0.2
2017-09-28 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-16 0.2.9
2016-06-15 0.2.8
2016-03-12 0.2.1
2015-06-02 0.1.1
2015-06-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-09 0.2.3
2018-10-22 0.2.2
2018-09-13 0.2.1
2018-04-27 0.2.0
2018-03-08 0.1.1
2017-11-21 0.1.0
2017-08-17 0.0.4
2017-07-14 0.0.3
2017-07-02 0.0.2
2017-05-31 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-12 0.1