Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music programming functions for
generating, manipulating, organizing and analyzing musical information in R.
The music notation framework facilitates creating and analyzing music data in notation form.
The package also provides API wrapper functions for transcribing musical representations in R into guitar tablature ("tabs") using the 'LilyPond' backend (<http://lilypond.org>).
'LilyPond' is open source music engraving software for generating high quality sheet music based on markup syntax.
'tabr' generates 'LilyPond' files from R code and can pass them to 'LilyPond' to be rendered into sheet music pdf files from R.
While 'LilyPond' caters to sheet music in general and 'tabr' can be used to create basic sheet music,
the transcription functions focus on leveraging 'LilyPond' specifically for creating quality guitar tablature.
The package offers nominal MIDI file output support in conjunction with rendering tablature output. See the 'tuneR' package for more general use of MIDI files in R.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between tabr versions 0.3.0 dated 2019-06-23 and 0.3.5 dated 2019-10-06
tabr-0.3.0/tabr/man/note-helpers.Rd |only tabr-0.3.0/tabr/tests/testthat/test-lintr.R |only tabr-0.3.5/tabr/DESCRIPTION | 31 tabr-0.3.5/tabr/MD5 | 262 +++---- tabr-0.3.5/tabr/NAMESPACE | 38 + tabr-0.3.5/tabr/NEWS.md | 17 tabr-0.3.5/tabr/R/chord_mapping.R | 166 +++- tabr-0.3.5/tabr/R/chords.R | 447 +++++++++---- tabr-0.3.5/tabr/R/data.R | 17 tabr-0.3.5/tabr/R/deprecated.R |only tabr-0.3.5/tabr/R/freq.R |only tabr-0.3.5/tabr/R/helpers.R | 135 ++- tabr-0.3.5/tabr/R/intervals.R | 41 - tabr-0.3.5/tabr/R/keys.R | 30 tabr-0.3.5/tabr/R/midi.R | 136 ++- tabr-0.3.5/tabr/R/modes.R | 41 - tabr-0.3.5/tabr/R/notes.R | 681 +++++++++++++++----- tabr-0.3.5/tabr/R/options.R | 11 tabr-0.3.5/tabr/R/phrase.R | 197 +++-- tabr-0.3.5/tabr/R/plot.R | 124 ++- tabr-0.3.5/tabr/R/repeats.R | 93 +- tabr-0.3.5/tabr/R/scales.R | 110 ++- tabr-0.3.5/tabr/R/sf.R | 271 ++++++- tabr-0.3.5/tabr/R/subs.R | 40 - tabr-0.3.5/tabr/R/tab.R | 275 +++++--- tabr-0.3.5/tabr/R/tabr.R | 45 + tabr-0.3.5/tabr/R/tracks.R | 184 +++-- tabr-0.3.5/tabr/R/transpose.R | 72 +- tabr-0.3.5/tabr/R/zzz.R | 9 tabr-0.3.5/tabr/README.md | 258 +++++-- tabr-0.3.5/tabr/build/vignette.rds |binary tabr-0.3.5/tabr/inst/WORDLIST | 34 tabr-0.3.5/tabr/inst/doc/tabr-basics.Rmd | 8 tabr-0.3.5/tabr/inst/doc/tabr-basics.html | 29 tabr-0.3.5/tabr/inst/doc/tabr-chords.R | 2 tabr-0.3.5/tabr/inst/doc/tabr-chords.Rmd | 2 tabr-0.3.5/tabr/inst/doc/tabr-chords.html | 8 tabr-0.3.5/tabr/inst/doc/tabr-engraving.html | 18 tabr-0.3.5/tabr/inst/doc/tabr-fretboard.html | 6 tabr-0.3.5/tabr/inst/doc/tabr-helpers.R | 16 tabr-0.3.5/tabr/inst/doc/tabr-helpers.Rmd | 28 tabr-0.3.5/tabr/inst/doc/tabr-helpers.html | 36 - tabr-0.3.5/tabr/inst/doc/tabr-phrases.R | 10 tabr-0.3.5/tabr/inst/doc/tabr-phrases.Rmd | 12 tabr-0.3.5/tabr/inst/doc/tabr-phrases.html | 18 tabr-0.3.5/tabr/inst/doc/tabr-prog-chords.R | 35 - tabr-0.3.5/tabr/inst/doc/tabr-prog-chords.Rmd | 49 + tabr-0.3.5/tabr/inst/doc/tabr-prog-chords.html | 168 +++- tabr-0.3.5/tabr/inst/doc/tabr-prog-notes.R | 34 tabr-0.3.5/tabr/inst/doc/tabr-prog-notes.Rmd | 100 ++ tabr-0.3.5/tabr/inst/doc/tabr-prog-notes.html | 237 +++++- tabr-0.3.5/tabr/inst/doc/tabr-prog-nw.R | 6 tabr-0.3.5/tabr/inst/doc/tabr-prog-nw.Rmd | 19 tabr-0.3.5/tabr/inst/doc/tabr-prog-nw.html | 60 + tabr-0.3.5/tabr/inst/doc/tabr-prog-scales.html | 6 tabr-0.3.5/tabr/inst/doc/tabr-repeats.R | 12 tabr-0.3.5/tabr/inst/doc/tabr-repeats.Rmd | 18 tabr-0.3.5/tabr/inst/doc/tabr-repeats.html | 24 tabr-0.3.5/tabr/inst/doc/tabr-tracks-scores.R | 5 tabr-0.3.5/tabr/inst/doc/tabr-tracks-scores.Rmd | 8 tabr-0.3.5/tabr/inst/doc/tabr-tracks-scores.html | 102 +- tabr-0.3.5/tabr/inst/doc/tabr-tunings.html | 54 - tabr-0.3.5/tabr/man/append_phrases.Rd | 59 + tabr-0.3.5/tabr/man/chord-compare.Rd | 10 tabr-0.3.5/tabr/man/chord-filter.Rd |only tabr-0.3.5/tabr/man/chord-mapping.Rd | 56 + tabr-0.3.5/tabr/man/chord_arpeggiate.Rd | 13 tabr-0.3.5/tabr/man/chord_break.Rd | 2 tabr-0.3.5/tabr/man/chord_def.Rd | 39 - tabr-0.3.5/tabr/man/chord_invert.Rd | 33 tabr-0.3.5/tabr/man/chord_is_diatonic.Rd | 8 tabr-0.3.5/tabr/man/chord_is_major.Rd |only tabr-0.3.5/tabr/man/chord_set.Rd | 30 tabr-0.3.5/tabr/man/chords.Rd | 132 +-- tabr-0.3.5/tabr/man/dyad.Rd | 26 tabr-0.3.5/tabr/man/fretboard_plot.Rd | 30 tabr-0.3.5/tabr/man/hp.Rd | 9 tabr-0.3.5/tabr/man/interval-helpers.Rd | 17 tabr-0.3.5/tabr/man/interval_semitones.Rd | 3 tabr-0.3.5/tabr/man/keys.Rd | 12 tabr-0.3.5/tabr/man/lilypond.Rd | 29 tabr-0.3.5/tabr/man/lp_chord_id.Rd | 10 tabr-0.3.5/tabr/man/mainIntervals.Rd | 3 tabr-0.3.5/tabr/man/midily.Rd | 60 + tabr-0.3.5/tabr/man/miditab.Rd | 50 + tabr-0.3.5/tabr/man/mode-helpers.Rd | 20 tabr-0.3.5/tabr/man/notate.Rd | 12 tabr-0.3.5/tabr/man/note-equivalence.Rd | 79 +- tabr-0.3.5/tabr/man/note-metadata.Rd |only tabr-0.3.5/tabr/man/note_is_natural.Rd |only tabr-0.3.5/tabr/man/note_slice.Rd |only tabr-0.3.5/tabr/man/phrase-checks.Rd | 50 - tabr-0.3.5/tabr/man/phrase.Rd | 80 +- tabr-0.3.5/tabr/man/pitch_freq.Rd |only tabr-0.3.5/tabr/man/repeats.Rd | 71 +- tabr-0.3.5/tabr/man/rest.Rd | 3 tabr-0.3.5/tabr/man/scale-deg.Rd | 48 - tabr-0.3.5/tabr/man/scale-helpers.Rd | 13 tabr-0.3.5/tabr/man/scale_chords.Rd | 9 tabr-0.3.5/tabr/man/score.Rd | 13 tabr-0.3.5/tabr/man/sf_phrase.Rd | 167 +++- tabr-0.3.5/tabr/man/tab.Rd | 36 - tabr-0.3.5/tabr/man/tabr.Rd | 36 - tabr-0.3.5/tabr/man/tabrSyntax.Rd | 6 tabr-0.3.5/tabr/man/tabr_dep.Rd |only tabr-0.3.5/tabr/man/tabr_options.Rd | 11 tabr-0.3.5/tabr/man/track.Rd | 81 +- tabr-0.3.5/tabr/man/trackbind.Rd | 30 tabr-0.3.5/tabr/man/transpose.Rd | 38 - tabr-0.3.5/tabr/man/tunings.Rd | 6 tabr-0.3.5/tabr/man/tuplet.Rd | 19 tabr-0.3.5/tabr/man/valid-notes.Rd | 48 + tabr-0.3.5/tabr/tests/testthat/test-chord-mapping.R | 14 tabr-0.3.5/tabr/tests/testthat/test-chords.R | 175 +++-- tabr-0.3.5/tabr/tests/testthat/test-freq.R |only tabr-0.3.5/tabr/tests/testthat/test-helpers.R | 27 tabr-0.3.5/tabr/tests/testthat/test-intervals.R | 3 tabr-0.3.5/tabr/tests/testthat/test-keys.R | 6 tabr-0.3.5/tabr/tests/testthat/test-modes.R | 31 tabr-0.3.5/tabr/tests/testthat/test-notes.R | 116 ++- tabr-0.3.5/tabr/tests/testthat/test-outputs.R | 120 ++- tabr-0.3.5/tabr/tests/testthat/test-phrase.R | 30 tabr-0.3.5/tabr/tests/testthat/test-plot.R | 46 + tabr-0.3.5/tabr/tests/testthat/test-repeats.R | 38 - tabr-0.3.5/tabr/tests/testthat/test-scales.R | 59 + tabr-0.3.5/tabr/tests/testthat/test-sf.R | 66 + tabr-0.3.5/tabr/tests/testthat/test-steps.R | 6 tabr-0.3.5/tabr/tests/testthat/test-transpose.R | 34 tabr-0.3.5/tabr/tests/testthat/test-tunings.R | 3 tabr-0.3.5/tabr/vignettes/tabr-basics.Rmd | 8 tabr-0.3.5/tabr/vignettes/tabr-chords.Rmd | 2 tabr-0.3.5/tabr/vignettes/tabr-helpers.Rmd | 28 tabr-0.3.5/tabr/vignettes/tabr-phrases.Rmd | 12 tabr-0.3.5/tabr/vignettes/tabr-prog-chords.Rmd | 49 + tabr-0.3.5/tabr/vignettes/tabr-prog-notes.Rmd | 100 ++ tabr-0.3.5/tabr/vignettes/tabr-prog-nw.Rmd | 19 tabr-0.3.5/tabr/vignettes/tabr-repeats.Rmd | 18 tabr-0.3.5/tabr/vignettes/tabr-tracks-scores.Rmd | 8 138 files changed, 5244 insertions(+), 2176 deletions(-)
Title: Simultaneous Enrichment Analysis
Description: SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor<m.ebrahimpoor@lumc.nl>
Diff between rSEA versions 2.0.0 dated 2019-10-03 and 2.1.0 dated 2019-10-06
DESCRIPTION | 8 +++++--- MD5 | 15 ++++++++++----- R/sea.R | 4 ++-- R/topsea.R | 28 ++++------------------------ build |only inst |only man/rSEA-package.Rd | 10 +++++++--- man/topSEA.Rd | 21 +++------------------ vignettes |only 9 files changed, 31 insertions(+), 55 deletions(-)
Title: Scoring the EQ-5D Descriptive System
Description: EQ-5D is a standard instrument (<https://euroqol.org/eq-5d-instruments/>) that measures the quality of life
often used in clinical and economic evaluations of health care technologies. Both adult versions of EQ-5D (EQ-5D-3L and EQ-5D-5L)
contain a descriptive system and visual analog scale. The descriptive system measures the patient's health in 5 dimensions:
the 5L versions has 5 levels and 3L version has 3 levels. The descriptive system scores are usually converted to index values
using country specific values sets (that incorporates the country preferences). This package allows the calculation of both descriptive system
scores to the index value scores. The value sets for EQ-5D-3L are from the references mentioned in the website <https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/valuation/>
The value sets for EQ-5D-3L for a total of 31 countries are used for the valuation (see the user guide for a complete list of references).
The value sets for EQ-5D-5L are obtained from references mentioned in the <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/valuation-standard-value-sets/> and other sources.
The value sets for EQ-5D-5L for a total of 17 countries are used for the valuation (see the user guide for a complete list of references).
The package can also be used to map 5L scores to 3L index values for 10 countries: Denmark, France, Germany, Japan, Netherlands, Spain, Thailand, UK, USA, and Zimbabwe.
The value set and method for mapping are obtained from Van Hout et al (2012) <doi: 10.1016/j.jval.2012.02.008>.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between valueEQ5D versions 0.4.4 dated 2019-09-13 and 0.4.5 dated 2019-10-06
DESCRIPTION | 8 MD5 | 72 - NAMESPACE | 48 R/basic_checks.R | 505 ++++----- R/eq5d.R | 1758 ++++++++++++++++----------------- README.md | 35 build/vignette.rds |binary inst/doc/User_Guide.R | 168 +-- inst/doc/User_Guide.html | 1167 ++++++++++----------- man/EQ5D3L_indexvalues.df.Rd | 188 +-- man/EQ5D3L_tariffs_TTO.df.Rd | 130 +- man/EQ5D3L_tariffs_VAS.df.Rd | 74 - man/EQ5D5L_crosswalk_indexvalues.df.Rd | 44 man/EQ5D5L_indexvalues.df.Rd | 102 - man/EQ5D5L_tariffs.df.Rd | 98 - man/Probability_matrix_crosswalk.df.Rd | 38 man/checkColumnExist.Rd | 44 man/checkScores3L.Rd | 58 - man/checkScores5L.Rd | 58 - man/convertNumberToIndividualDigits.Rd | 40 man/descriptiveStatDataColumn.Rd | 48 man/dot-correctImplausibleOrdering.Rd | 40 man/eq5dmap5Lto3L.Rd | 80 - man/eq5dmap5Lto3LIndscores.Rd | 72 - man/getColNumExistingColNames.Rd | 48 man/getColumnNoColNames.Rd | 44 man/getFrequencyTable.Rd | 40 man/getModeForVec.Rd | 40 man/replaceSpaceUnderscore.Rd | 40 man/subsetGenderAgeToGroup.Rd | 52 man/testDataNumNorange.Rd | 44 man/testFileExistRead.Rd | 40 man/valueEQ5D3L.Rd | 76 - man/valueEQ5D3LIndscores.Rd | 70 - man/valueEQ5D5L.Rd | 76 - man/valueEQ5D5LIndscores.Rd | 66 - tests/testthat/testthat.R | 1349 ++++++++++++------------- 37 files changed, 3408 insertions(+), 3452 deletions(-)
Title: A 'Shiny' App for Exploration of Text Collections
Description: Facilitates dynamic exploration of text collections through an
intuitive graphical user interface. The package contains 1) a helper function
to convert a data frame to a 'corporaexplorerobject', 2) a 'Shiny' app for
fast and flexible exploration of a 'corporaexplorerobject', and 3) a 'Shiny'
app for simple retrieval/extraction of documents from a 'corporaexplorerobject'
in a reading-friendly format.
Author: Kristian Lundby Gjerde [aut, cre]
Maintainer: Kristian Lundby Gjerde <kristian.gjerde@gmail.com>
Diff between corporaexplorer versions 0.6.2 dated 2019-09-09 and 0.6.3 dated 2019-10-06
corporaexplorer-0.6.2/corporaexplorer/inst/explorer/global/backwards_compatibility.R |only corporaexplorer-0.6.2/corporaexplorer/inst/explorer/global/config.R |only corporaexplorer-0.6.2/corporaexplorer/inst/explorer/global/config_tests.R |only corporaexplorer-0.6.2/corporaexplorer/inst/explorer/global/constants.R |only corporaexplorer-0.6.3/corporaexplorer/DESCRIPTION | 25 +- corporaexplorer-0.6.3/corporaexplorer/MD5 | 57 +++--- corporaexplorer-0.6.3/corporaexplorer/NAMESPACE | 1 corporaexplorer-0.6.3/corporaexplorer/NEWS.md |only corporaexplorer-0.6.3/corporaexplorer/R/prepare_data.R | 27 +- corporaexplorer-0.6.3/corporaexplorer/R/run_corpus_explorer.R | 34 +++ corporaexplorer-0.6.3/corporaexplorer/R/run_document_extractor.R | 5 corporaexplorer-0.6.3/corporaexplorer/README.md | 94 ++-------- corporaexplorer-0.6.3/corporaexplorer/data/test_data.rda |binary corporaexplorer-0.6.3/corporaexplorer/inst/explorer/app.R | 74 ------- corporaexplorer-0.6.3/corporaexplorer/inst/explorer/config |only corporaexplorer-0.6.3/corporaexplorer/inst/explorer/global/corpus_plot_functions/create_distance_coordinates_dok.R | 3 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/global/corpus_plot_functions/plotting_corpus_data_dok.R | 2 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/1_startup_actions.R | 2 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/2_event_search_button/UI_element_control.R | 6 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/2_event_search_button/check_search_arguments.R | 4 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/2_event_search_button/subsetting.R | 6 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/2_event_search_button/update_session_variables.R | 3 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/3_event_corpus_map_click.R | 2 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/functions_ui_management.R | 11 + corporaexplorer-0.6.3/corporaexplorer/inst/explorer/server/session_variables.R | 3 corporaexplorer-0.6.3/corporaexplorer/inst/explorer/ui/css_from_arguments.R |only corporaexplorer-0.6.3/corporaexplorer/inst/explorer/ui/ui_sidebar.R | 35 ++- corporaexplorer-0.6.3/corporaexplorer/man/prepare_data.Rd | 2 corporaexplorer-0.6.3/corporaexplorer/man/print.corporaexplorerobject.Rd | 4 corporaexplorer-0.6.3/corporaexplorer/man/run_corpus_explorer.Rd | 34 +++ corporaexplorer-0.6.3/corporaexplorer/man/run_document_extractor.Rd | 5 31 files changed, 201 insertions(+), 238 deletions(-)
More information about corporaexplorer at CRAN
Permanent link
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt', and 'designmatch' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 3.8.0 dated 2019-09-12 and 3.9.0 dated 2019-10-06
DESCRIPTION | 10 MD5 | 68 +++--- NAMESPACE | 5 NEWS.md | 16 + R/SHARED.R | 294 ++++++++++++++++++++--------- R/bal.sum.R |only R/base.bal.tab.R | 25 +- R/functions_for_processing.R | 249 ++++++++++++------------ R/get.w.R | 37 +-- R/love.plot.R | 12 - R/print.bal.tab.R | 25 +- R/x2base.R | 58 +---- README.md | 36 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/cobalt_A0_basic_use.Rmd | 34 +-- inst/doc/cobalt_A0_basic_use.html | 124 ++++++------ inst/doc/cobalt_A1_other_packages.html | 33 +-- inst/doc/cobalt_A2_cluster_imp.html | 247 ++++++++++++------------ inst/doc/cobalt_A3_longitudinal_treat.html | 4 inst/doc/cobalt_A4_love.plot.R |only inst/doc/cobalt_A4_love.plot.Rmd |only inst/doc/cobalt_A4_love.plot.html |only inst/figures/README-unnamed-chunk-3-1.png |binary inst/figures/README-unnamed-chunk-3-2.png |binary inst/figures/README-unnamed-chunk-4-1.png |binary man/bal.tab.CBPS.Rd | 2 man/bal.tab.Match.Rd | 2 man/bal.tab.Rd | 55 ++--- man/bal.tab.df.formula.Rd | 6 man/bal.tab.df.formula.list.Rd | 2 man/bal.tab.matchit.Rd | 2 man/bal.tab.ps.Rd | 7 man/bal.tab.weightit.Rd | 2 man/balance.summary.Rd |only man/get.w.Rd | 3 vignettes/cobalt_A0_basic_use.Rmd | 34 +-- vignettes/cobalt_A4_love.plot.Rmd |only 38 files changed, 771 insertions(+), 621 deletions(-)
Title: 'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence and 'd2b'
Sunburst
Description: Make interactive 'd3.js' sequence sunburst diagrams in R with the
convenience and infrastructure of an 'htmlwidget'.
Author: Mike Bostock [aut, cph] (d3.js library, http://d3js.org),
Kerry Rodden [aut, cph] (sequences library in htmlwidgets/lib,
https://gist.github.com/kerryrodden/7090426),
Kevin Warne [aut, cph] (d2b sunburst library in htmlwidgets/lib,
https://github.com/d2bjs/d2b),
Kent Russell [aut, cre] (R interface),
Florian Breitwieser [ctb] (R interface),
CJ Yetman [ctb] (R interface, <https://orcid.org/0000-0001-5099-9500>)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between sunburstR versions 2.1.1 dated 2019-03-04 and 2.1.2 dated 2019-10-06
sunburstR-2.1.1/sunburstR/inst/htmlwidgets/lib/d2b/d2b.js |only sunburstR-2.1.2/sunburstR/DESCRIPTION | 8 sunburstR-2.1.2/sunburstR/MD5 | 27 sunburstR-2.1.2/sunburstR/NAMESPACE | 1 sunburstR-2.1.2/sunburstR/NEWS.md | 4 sunburstR-2.1.2/sunburstR/R/d2b.R | 46 sunburstR-2.1.2/sunburstR/README.md | 2 sunburstR-2.1.2/sunburstR/inst/doc/sunburst-2-0-0.html | 6282 ---------- sunburstR-2.1.2/sunburstR/inst/examples/example_sund2bTooltip.R |only sunburstR-2.1.2/sunburstR/inst/htmlwidgets/lib/d2b/LICENSE | 54 sunburstR-2.1.2/sunburstR/inst/htmlwidgets/lib/d2b/README.md | 102 sunburstR-2.1.2/sunburstR/inst/htmlwidgets/lib/d2b/d2b.min.js | 5 sunburstR-2.1.2/sunburstR/inst/htmlwidgets/lib/d2b/package.json | 193 sunburstR-2.1.2/sunburstR/inst/htmlwidgets/sund2b.js | 2 sunburstR-2.1.2/sunburstR/man/sund2b.Rd | 5 sunburstR-2.1.2/sunburstR/man/sund2bTooltip.Rd |only 16 files changed, 310 insertions(+), 6421 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
See Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.3-17 dated 2019-08-01 and 0.3-18 dated 2019-10-06
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 3 +++ inst/doc/brcancer.pdf |binary inst/doc/german.pdf |binary inst/doc/kkt.Rnw | 7 +++++-- inst/doc/kkt.pdf |binary src/lmnetGLM.f | 34 +++++++++++++++++++--------------- src/midloopGLM.f | 1 + src/mpath_init.c | 4 ++-- src/nclreg_ad.f | 2 +- src/nclreg_onelambda.f | 5 +++-- src/zi_onelambda.f | 2 +- src/zipath_active.f | 5 ++++- vignettes/kkt.Rnw | 7 +++++-- vignettes/mpath.bib | 4 ++-- 16 files changed, 65 insertions(+), 47 deletions(-)
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006>.
Author: Peter Knaus [aut, cre] (<https://orcid.org/0000-0001-6498-7084>),
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] (<https://orcid.org/0000-0003-0360-7628>),
Sylvia Frühwirth-Schnatter [aut]
(<https://orcid.org/0000-0003-0516-5552>),
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 1.1.0 dated 2019-10-06 and 1.1.1 dated 2019-10-06
DESCRIPTION | 6 MD5 | 12 NEWS.md | 4 inst/doc/shrinkTVP.ltx | 692 ++++++++++++++++++++++++++++-------------------- inst/doc/shrinkTVP.pdf |binary vignettes/shrinkTVP.bib | 18 - vignettes/shrinkTVP.ltx | 692 ++++++++++++++++++++++++++++-------------------- 7 files changed, 853 insertions(+), 571 deletions(-)
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research (NIBR) [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.2.0 dated 2019-04-20 and 1.3.0 dated 2019-10-06
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/hdf5r.html | 22 ++++++---------------- src/Makevars.win | 48 +++++++++++++++++++++--------------------------- src/convert.c | 13 +++++++++++-- tools |only 8 files changed, 52 insertions(+), 54 deletions(-)
Title: Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Description: Markov chain Monte Carlo (MCMC) sampler for fully Bayesian estimation of latent factor stochastic volatility models with interweaving <doi:10.1080/10618600.2017.1322091>. Sparsity can be achieved through the usage of Normal-Gamma priors on the factor loading matrix <doi:10.1016/j.jeconom.2018.11.007>.
Author: Gregor Kastner [aut, cre] (<https://orcid.org/0000-0002-8237-8271>),
Darjus Hosszejni [ctb] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between factorstochvol versions 0.9.2 dated 2019-06-27 and 0.9.3 dated 2019-10-06
DESCRIPTION | 9 - MD5 | 60 ++++--- NEWS | 10 + R/utilities_fsvdraws.R | 5 R/wrappers.R | 64 +++++-- build/vignette.rds |binary inst/CITATION | 31 +++ inst/doc/paper.Rnw | 46 ++--- inst/doc/paper.pdf |binary man/fsvsample.Rd | 17 +- src/sampler.cpp | 18 +- tests |only vignettes/Figures/article-comtimeplot-1.pdf |binary vignettes/Figures/article-corimageplot-1.pdf |binary vignettes/Figures/article-cortimeplot-1.pdf |binary vignettes/Figures/article-fsvprepdata-1.pdf |binary vignettes/Figures/article-loadplot2-1.pdf |binary vignettes/Figures/article-loadplot2-2.pdf |binary vignettes/Figures/article-logdetcovn-1.pdf |binary vignettes/Figures/article-plotsvlpred-1.pdf |binary vignettes/Figures/article-preddist-1.pdf |binary vignettes/Figures/article-svlbetaplot-1.pdf |binary vignettes/Figures/article-svlplot-1.pdf | 143 +++++++++-------- vignettes/Figures/article-varplot-1.pdf | 219 ++++++++++++++------------- vignettes/Figures/article-varplot2-1.pdf |binary vignettes/Figures/article-voltimeplot-1.pdf |binary vignettes/doc/Makefile | 1 vignettes/doc/paper.Rnw | 4 vignettes/paper.Rnw | 46 ++--- 29 files changed, 388 insertions(+), 285 deletions(-)
More information about factorstochvol at CRAN
Permanent link
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006>.
Author: Peter Knaus [aut, cre] (<https://orcid.org/0000-0001-6498-7084>),
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] (<https://orcid.org/0000-0003-0360-7628>),
Sylvia Frühwirth-Schnatter [aut]
(<https://orcid.org/0000-0003-0516-5552>),
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 1.0.2 dated 2019-08-07 and 1.1.0 dated 2019-10-06
shrinkTVP-1.0.2/shrinkTVP/man/plot.shrinkTVP_res.Rd |only shrinkTVP-1.0.2/shrinkTVP/man/print.shrinkTVP_res.Rd |only shrinkTVP-1.1.0/shrinkTVP/DESCRIPTION | 8 shrinkTVP-1.1.0/shrinkTVP/MD5 | 68 +- shrinkTVP-1.1.0/shrinkTVP/NAMESPACE | 13 shrinkTVP-1.1.0/shrinkTVP/NEWS.md | 8 shrinkTVP-1.1.0/shrinkTVP/R/Imports.R | 6 shrinkTVP-1.1.0/shrinkTVP/R/RcppExports.R | 8 shrinkTVP-1.1.0/shrinkTVP/R/pred_funs.R |only shrinkTVP-1.1.0/shrinkTVP/R/shrinkTVP.R | 116 --- shrinkTVP-1.1.0/shrinkTVP/R/simTVP.R | 1 shrinkTVP-1.1.0/shrinkTVP/R/utilities_shrink_TVP_res.R | 293 ++++++++-- shrinkTVP-1.1.0/shrinkTVP/inst/doc/shrinkTVP.ltx | 61 -- shrinkTVP-1.1.0/shrinkTVP/inst/doc/shrinkTVP.pdf |binary shrinkTVP-1.1.0/shrinkTVP/man/LPDS.Rd |only shrinkTVP-1.1.0/shrinkTVP/man/eval_pred_dens.Rd |only shrinkTVP-1.1.0/shrinkTVP/man/plot.mcmc.tvp.Rd | 73 ++ shrinkTVP-1.1.0/shrinkTVP/man/plot.shrinkTVP.Rd |only shrinkTVP-1.1.0/shrinkTVP/man/print.shrinkTVP.Rd |only shrinkTVP-1.1.0/shrinkTVP/man/shrinkTVP.Rd | 21 shrinkTVP-1.1.0/shrinkTVP/man/simTVP.Rd | 3 shrinkTVP-1.1.0/shrinkTVP/src/Makevars | 2 shrinkTVP-1.1.0/shrinkTVP/src/Makevars.win | 2 shrinkTVP-1.1.0/shrinkTVP/src/RcppExports.cpp | 35 - shrinkTVP-1.1.0/shrinkTVP/src/pred_dens_mix_approx.cpp |only shrinkTVP-1.1.0/shrinkTVP/src/sample_beta_McCausland.cpp | 2 shrinkTVP-1.1.0/shrinkTVP/src/shrink_TVP.cpp | 40 - shrinkTVP-1.1.0/shrinkTVP/tests/testthat/test_shrinkTVP.R | 2 shrinkTVP-1.1.0/shrinkTVP/tests/testthat/test_shrinkTVP_methods.R | 1 shrinkTVP-1.1.0/shrinkTVP/tests/testthat/test_shrinkTVP_pred.R |only shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/LPDS_macro.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_beta.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_beta_2.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_dens.pdf |only shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_sigma2.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_theta.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_usmacro_beta.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/figs/plot_usmacro_theta.pdf |binary shrinkTVP-1.1.0/shrinkTVP/vignettes/shrinkTVP.bib | 94 +++ shrinkTVP-1.1.0/shrinkTVP/vignettes/shrinkTVP.ltx | 61 -- 40 files changed, 542 insertions(+), 376 deletions(-)
Title: Interface for the RobinHood.com No Commission Investing Platform
Description: Execute API calls to the RobinHood <https://robinhood.com> investing platform. Functionality includes accessing account data and current holdings, retrieving investment statistics and quotes, placing and canceling orders, getting market trading hours, searching investments by popular tag, and interacting with watch lists.
Author: Joseph Blubaugh
Maintainer: Joseph Blubaugh <jestonblu@gmail.com>
Diff between RobinHood versions 1.2 dated 2019-09-30 and 1.2.1 dated 2019-10-06
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/api_accounts.R | 1 + R/api_accounts_crypto.R | 1 + R/api_logout.R | 9 +++++---- R/api_orders.R | 6 +++--- R/api_orders_crypto.R | 6 +++--- R/api_tickers.R | 9 ++++----- R/check_rh.R | 1 + R/get_tickers.R | 7 ++++--- R/logout.R | 2 +- R/mod_json.R | 1 + 12 files changed, 39 insertions(+), 34 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.0-6 dated 2019-10-04 and 1.0-7 dated 2019-10-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ tests/bugfixes.R | 4 ++-- tests/bugfixes.Rout.save | 10 +++++----- 6 files changed, 23 insertions(+), 16 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format and has either no header or a two column header.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Joan Capdevila Pujol [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.10-4 dated 2019-09-09 and 1.10-7 dated 2019-10-06
DESCRIPTION | 8 MD5 | 48 +-- NAMESPACE | 2 R/g.analyse.perfile.R | 1 R/g.calibrate.R | 9 R/g.cwaread.R | 2 R/g.getmeta.R | 188 +++++++----- R/g.part1.R | 27 + R/g.part2.R | 15 - R/g.part3.R | 17 - R/g.part5.R | 24 + R/g.readaccfile.R | 4 R/g.report.part4.R | 508 +++++++++++++++++------------------ R/g.shell.GGIR.R | 5 R/read.myacc.csv.R | 11 inst/NEWS.Rd | 17 + inst/doc/GGIR.Rmd | 2 inst/doc/GGIR.html | 2 man/GGIR-package.Rd | 4 man/g.getmeta.Rd | 3 man/g.report.part4.Rd | 38 ++ man/read.myacc.csv.Rd | 12 tests/testthat/test_greadaccfile.R | 2 tests/testthat/test_read.myacc.csv.R | 27 + vignettes/GGIR.Rmd | 2 25 files changed, 568 insertions(+), 410 deletions(-)
Title: Calculates the Test-Statistic for the Drift Burst Hypothesis
Description: Calculates the T-Statistic for the drift burst hypothesis from the working paper Christensen, Oomen and Reno (2018) <DOI:10.2139/ssrn.2842535>. The authors' MATLAB code is available upon request, see: <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2842535>.
Author: Emil Sjoerup
Maintainer: Emil Sjoerup <emilsjoerup@live.dk>
Diff between DriftBurstHypothesis versions 0.2.0 dated 2019-10-02 and 0.2.0.1 dated 2019-10-06
ChangeLog | 3 +++ DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/ClassMethods.R | 1 - build/partial.rdb |binary src/DBH.cpp | 2 +- tests/testthat/Rplots.pdf |binary 7 files changed, 13 insertions(+), 11 deletions(-)
More information about DriftBurstHypothesis at CRAN
Permanent link
Title: Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Description: Contains many functions useful for managing 'NetCDF' files (see <http://en.wikipedia.org/wiki/NetCDF>), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between HelpersMG versions 3.7 dated 2019-08-29 and 3.8 dated 2019-10-06
HelpersMG-3.7/HelpersMG/R/as.quantile.R |only HelpersMG-3.7/HelpersMG/man/as.quantile.Rd |only HelpersMG-3.8/HelpersMG/DESCRIPTION | 8 +- HelpersMG-3.8/HelpersMG/MD5 | 52 +++++++++---------- HelpersMG-3.8/HelpersMG/NAMESPACE | 2 HelpersMG-3.8/HelpersMG/NEWS | 10 +++ HelpersMG-3.8/HelpersMG/R/HelpersMG-package.R | 4 - HelpersMG-3.8/HelpersMG/R/MHalgoGen.R | 7 ++ HelpersMG-3.8/HelpersMG/R/as.quantiles.R |only HelpersMG-3.8/HelpersMG/R/dSnbinom.R | 32 +++++------ HelpersMG-3.8/HelpersMG/R/modifyVector.R | 10 ++- HelpersMG-3.8/HelpersMG/R/pSnbinom.R | 6 +- HelpersMG-3.8/HelpersMG/R/plot.mcmcComposite.R | 18 +++--- HelpersMG-3.8/HelpersMG/R/qSnbinom.R | 8 +- HelpersMG-3.8/HelpersMG/R/rSnbinom.R | 2 HelpersMG-3.8/HelpersMG/R/summary.mcmcComposite.R | 11 +++- HelpersMG-3.8/HelpersMG/man/HelpersMG-package.Rd | 4 - HelpersMG-3.8/HelpersMG/man/MHalgoGen.Rd | 2 HelpersMG-3.8/HelpersMG/man/as.mcmc.mcmcComposite.Rd | 2 HelpersMG-3.8/HelpersMG/man/as.parameters.Rd | 2 HelpersMG-3.8/HelpersMG/man/as.quantiles.Rd |only HelpersMG-3.8/HelpersMG/man/dSnbinom.Rd | 26 +++------ HelpersMG-3.8/HelpersMG/man/merge.mcmcComposite.Rd | 2 HelpersMG-3.8/HelpersMG/man/modifyVector.Rd | 5 + HelpersMG-3.8/HelpersMG/man/pSnbinom.Rd | 4 - HelpersMG-3.8/HelpersMG/man/plot.mcmcComposite.Rd | 2 HelpersMG-3.8/HelpersMG/man/qSnbinom.Rd | 4 - HelpersMG-3.8/HelpersMG/man/rSnbinom.Rd | 2 HelpersMG-3.8/HelpersMG/man/summary.mcmcComposite.Rd | 2 29 files changed, 128 insertions(+), 99 deletions(-)
More information about aliases2entrez at CRAN
Permanent link
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting the Generalized Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The models use a distributional regression approach where all the parameters of the conditional distribution of the response variable are modelled using explanatory variables.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 5.1-4 dated 2019-05-18 and 5.1-5 dated 2019-10-06
gamlss-5.1-4/gamlss/R/centilesPLOT.R |only gamlss-5.1-4/gamlss/R/random.R |only gamlss-5.1-4/gamlss/R/re_gamlss_lme.R |only gamlss-5.1-4/gamlss/README.md |only gamlss-5.1-5/gamlss/DESCRIPTION | 8 - gamlss-5.1-5/gamlss/MD5 | 179 ++++++++++++-------------- gamlss-5.1-5/gamlss/R/centilesFan.R | 22 ++- gamlss-5.1-5/gamlss/R/centilesPlot.R |only gamlss-5.1-5/gamlss/R/centilescom.R | 21 ++- gamlss-5.1-5/gamlss/R/cubicSplines-10-08-12.R | 3 gamlss-5.1-5/gamlss/R/gamlss.R | 10 - gamlss-5.1-5/gamlss/R/gamlssVGD.R | 2 gamlss-5.1-5/gamlss/R/lms.R | 20 ++ gamlss-5.1-5/gamlss/R/pb.R | 2 gamlss-5.1-5/gamlss/R/pb_goingtozero.R | 2 gamlss-5.1-5/gamlss/R/pbc.R | 10 - gamlss-5.1-5/gamlss/R/pbm.R | 2 gamlss-5.1-5/gamlss/R/random.r |only gamlss-5.1-5/gamlss/R/re_gamlss_lme_test.R |only gamlss-5.1-5/gamlss/R/ri.R | 7 - gamlss-5.1-5/gamlss/R/wp.R | 2 gamlss-5.1-5/gamlss/build/partial.rdb |binary gamlss-5.1-5/gamlss/inst/doc/NEWS.txt | 46 +++++- gamlss-5.1-5/gamlss/man/DevianceIncr.Rd | 2 gamlss-5.1-5/gamlss/man/IC.Rd | 4 gamlss-5.1-5/gamlss/man/LR.test.Rd | 4 gamlss-5.1-5/gamlss/man/Q.stats.Rd | 4 gamlss-5.1-5/gamlss/man/Rsq.Rd | 4 gamlss-5.1-5/gamlss/man/acfResid.Rd | 2 gamlss-5.1-5/gamlss/man/additive.fit.Rd | 2 gamlss-5.1-5/gamlss/man/bfp.Rd | 4 gamlss-5.1-5/gamlss/man/calibration.Rd | 4 gamlss-5.1-5/gamlss/man/centiles.Rd | 8 - gamlss-5.1-5/gamlss/man/centiles.com.Rd | 6 gamlss-5.1-5/gamlss/man/centiles.pred.Rd | 50 ++++--- gamlss-5.1-5/gamlss/man/centiles.split.Rd | 6 gamlss-5.1-5/gamlss/man/coef.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/cs.Rd | 2 gamlss-5.1-5/gamlss/man/deviance.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/dtop.Rd | 2 gamlss-5.1-5/gamlss/man/edf.Rd | 4 gamlss-5.1-5/gamlss/man/findhyper.Rd | 2 gamlss-5.1-5/gamlss/man/fitDist.Rd | 2 gamlss-5.1-5/gamlss/man/fitted.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/fittedPlot.Rd | 4 gamlss-5.1-5/gamlss/man/formula.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss-package.Rd | 2 gamlss-5.1-5/gamlss/man/gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss.control.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss.cs.Rd | 2 gamlss-5.1-5/gamlss/man/gamlss.fp.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss.ps.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss.random.Rd | 4 gamlss-5.1-5/gamlss/man/gamlss.scope.Rd | 2 gamlss-5.1-5/gamlss/man/gamlssML.Rd | 4 gamlss-5.1-5/gamlss/man/gamlssVGD.Rd | 2 gamlss-5.1-5/gamlss/man/gen.likelihood.Rd | 4 gamlss-5.1-5/gamlss/man/getPEF.Rd | 2 gamlss-5.1-5/gamlss/man/getQuantile.Rd | 2 gamlss-5.1-5/gamlss/man/getSmo.Rd | 2 gamlss-5.1-5/gamlss/man/glim.control.Rd | 4 gamlss-5.1-5/gamlss/man/histDist.Rd | 2 gamlss-5.1-5/gamlss/man/histSmo.Rd | 2 gamlss-5.1-5/gamlss/man/lms.Rd | 4 gamlss-5.1-5/gamlss/man/lo.Rd | 4 gamlss-5.1-5/gamlss/man/loglogSurv.Rd | 2 gamlss-5.1-5/gamlss/man/lpred.Rd | 2 gamlss-5.1-5/gamlss/man/model.frame.gamlss.Rd | 2 gamlss-5.1-5/gamlss/man/numeric.deriv.Rd | 2 gamlss-5.1-5/gamlss/man/par.plot.Rd | 4 gamlss-5.1-5/gamlss/man/pcat.Rd | 4 gamlss-5.1-5/gamlss/man/pdf.plot.Rd | 4 gamlss-5.1-5/gamlss/man/plot.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/plot.histSmo.Rd | 2 gamlss-5.1-5/gamlss/man/plot2way.Rd | 2 gamlss-5.1-5/gamlss/man/polyS.Rd | 4 gamlss-5.1-5/gamlss/man/predict.gamlss.Rd | 2 gamlss-5.1-5/gamlss/man/print.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/prof.dev.Rd | 4 gamlss-5.1-5/gamlss/man/prof.term.Rd | 4 gamlss-5.1-5/gamlss/man/ps.Rd | 4 gamlss-5.1-5/gamlss/man/quantSheets.Rd | 2 gamlss-5.1-5/gamlss/man/random.Rd | 6 gamlss-5.1-5/gamlss/man/refit.Rd | 4 gamlss-5.1-5/gamlss/man/residuals.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/ri.Rd | 4 gamlss-5.1-5/gamlss/man/rqres.plot.Rd | 4 gamlss-5.1-5/gamlss/man/rvcov.Rd | 4 gamlss-5.1-5/gamlss/man/stepGAIC.Rd | 2 gamlss-5.1-5/gamlss/man/summary.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/term.plot.Rd | 2 gamlss-5.1-5/gamlss/man/update.gamlss.Rd | 4 gamlss-5.1-5/gamlss/man/wp.Rd | 2 gamlss-5.1-5/gamlss/man/z.scores.Rd | 2 94 files changed, 360 insertions(+), 260 deletions(-)
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe),
'let()'
(converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools:strmacro()' and 'base::bquote()'),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder),
and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.9.0 dated 2019-09-28 and 1.9.1 dated 2019-10-06
DESCRIPTION | 8 +++---- MD5 | 44 +++++++++++++++++++-------------------- NEWS.md | 5 ++++ R/bpipe.R | 11 +++++++++ R/locum.R | 2 - README.md | 10 ++++++++ inst/doc/CornerCases.html | 4 +-- inst/doc/DebugFnW.html | 6 ++--- inst/doc/FrameTools.html | 4 +-- inst/doc/Function_Objects.html | 4 +-- inst/doc/Named_Arguments.html | 4 +-- inst/doc/QuotingConcatinate.html | 4 +-- inst/doc/SubstitutionModes.html | 4 +-- inst/doc/bquote.html | 6 ++--- inst/doc/dot_pipe.R | 9 +++++++ inst/doc/dot_pipe.Rmd | 18 +++++++++++++++ inst/doc/dot_pipe.html | 15 ++++++++++--- inst/doc/lambda.html | 4 +-- inst/doc/let.html | 4 +-- inst/doc/named_map_builder.html | 4 +-- inst/doc/wrapr_applicable.html | 4 +-- man/dot_arrow.Rd | 11 +++++++++ vignettes/dot_pipe.Rmd | 18 +++++++++++++++ 23 files changed, 145 insertions(+), 58 deletions(-)
Title: A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
Description: Provides a consistent API to pull United States Department of Agriculture census and survey data from
the National Agricultural Statistics Service (NASS) QuickStats service <https://quickstats.nass.usda.gov>.
Author: Brad Lindblad [aut, cre],
Michael Thomas [ctb],
Alex Mindeman [ctb]
Maintainer: Brad Lindblad <bradley.lindblad@gmail.com>
Diff between tidyUSDA versions 0.2.0 dated 2019-09-29 and 0.2.1 dated 2019-10-06
DESCRIPTION | 22 ++++++++++++---------- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/getQuickstat.R | 15 +++++++++++++++ README.md | 9 +++------ inst/doc/using_tidyusda.R | 3 +-- inst/doc/using_tidyusda.Rmd | 5 +++-- inst/doc/using_tidyusda.html | 10 +++++----- vignettes/using_tidyusda.Rmd | 5 +++-- 9 files changed, 55 insertions(+), 35 deletions(-)
Title: Movement Data Visualization
Description: Tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations.
Author: Jakob Schwalb-Willmann [aut, cre]
Maintainer: Jakob Schwalb-Willmann <movevis@schwalb-willmann.de>
Diff between moveVis versions 0.10.2 dated 2019-04-30 and 0.10.3 dated 2019-10-06
DESCRIPTION | 8 +++---- MD5 | 30 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 20 ++++++++++++++++++ R/add_scalebar.R | 22 +++++++++++++++----- R/basemap_data.R | 4 ++- R/frames_graph.R | 7 +----- R/frames_spatial.R | 35 ++++++++++++++++++++------------- R/moveVis-internal.R | 37 ++++++++++++++++++++++++++++------ R/move_data.R | 4 ++- README.md | 53 +++++++++++++++++++++++++++++++------------------- man/add_scalebar.Rd | 6 +++-- man/basemap_data.Rd | 4 +-- man/frames_graph.Rd | 7 +----- man/frames_spatial.Rd | 18 +++++++--------- man/move_data.Rd | 4 +-- 16 files changed, 167 insertions(+), 93 deletions(-)
Title: Multiple Fill and Color Scales in 'ggplot2'
Description: Use multiple fill and color scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between ggnewscale versions 0.3.0 dated 2019-07-05 and 0.4.0 dated 2019-10-06
DESCRIPTION | 6 +++--- MD5 | 25 +++++++++++++++++-------- NEWS.md | 19 +++++++++++++++++-- R/ggnewscale-package.R | 8 +++++++- R/new-scale.R | 27 ++++++++++++++++++--------- R/utils.R |only README.md | 14 ++++++++++---- man/figures/README-unnamed-chunk-1-1.png |binary man/figures/cividis.svg |only man/figures/inferno.svg |only man/figures/logo.png |only man/figures/magma.svg |only man/figures/makes_ring.R |only man/figures/plasma.svg |only man/figures/ring.svg |only man/figures/viridis.svg |only man/ggnewscale-package.Rd | 4 +++- man/new_scale.Rd | 4 ++-- 18 files changed, 77 insertions(+), 30 deletions(-)
Title: Generate Postestimation Quantities for Bayesian MCMC Estimation
Description: An implementation of functions to generate and plot postestimation quantities after estimating Bayesian regression models using Markov chain Monte Carlo (MCMC). Functionality includes the estimation of the Precision-Recall curves (see Beger, 2016 <doi:10.2139/ssrn.2765419>), the implementation of the observed values method of calculating predicted probabilities by Hanmer and Kalkan (2013) <doi:10.1111/j.1540-5907.2012.00602.x>, the implementation of the average value method of calculating predicted probabilities (see King, Tomz, and Wittenberg, 2000 <doi:10.2307/2669316>), and the generation and plotting of first differences to summarize typical effects across covariates (see Long 1997, ISBN:9780803973749; King, Tomz, and Wittenberg, 2000 <doi:10.2307/2669316>). This package can be used with MCMC output generated by any Bayesian estimation tool including 'JAGS', 'BUGS', 'MCMCpack', and 'Stan'.
Author: Johannes Karreth [aut] (<https://orcid.org/0000-0003-4586-7153>),
Shana Scogin [aut, cre] (<https://orcid.org/0000-0002-7801-853X>),
Rob Williams [aut] (<https://orcid.org/0000-0001-9259-3883>),
Andreas Beger [aut] (<https://orcid.org/0000-0003-1883-3169>),
Myunghee Lee [ctb],
Neil Williams [ctb]
Maintainer: Shana Scogin <shanarscogin@gmail.com>
Diff between BayesPostEst versions 0.0.1 dated 2019-08-05 and 0.1.0 dated 2019-10-06
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