Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398>.
Author: Øyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 0.3.0 dated 2019-02-28 and 0.4.0 dated 2019-10-17
DESCRIPTION | 10 - MD5 | 19 +- NAMESPACE | 4 R/OldVersions.R |only R/PLS2way.R |only R/PLSrounding.R | 79 +++++++-- R/RoundViaDummy.R | 426 ++++++++++++++++++++++++++++++++++++++------------ R/SmallCountData.R | 9 - man/PLS2way.Rd |only man/PLSrounding.Rd | 31 +++ man/RoundViaDummy.Rd | 44 +++++ man/SmallCountData.Rd | 3 12 files changed, 499 insertions(+), 126 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: Web Application Framework for 'PhUSE' Scripts
Description: Make it easy to review, download and execute scripts stored in Github
'phuse-scripts' repository <https://github.com/phuse-org/phuse-scripts>. Some examples
included show the web application framework using the script metadata. The 'PhUSE'
is Pharmaceutical Users Software Exchange <http://www.phuse.eu>.
Author: Hanming Tu [aut, cre]
Maintainer: Hanming Tu <hanming.tu@gmail.com>
Diff between phuse versions 0.1.8 dated 2019-06-18 and 0.2.0 dated 2019-10-17
phuse-0.1.8/phuse/NEWS |only phuse-0.2.0/phuse/DESCRIPTION | 9 phuse-0.2.0/phuse/LICENSE | 8 phuse-0.2.0/phuse/MD5 | 178 +- phuse-0.2.0/phuse/NAMESPACE | 99 - phuse-0.2.0/phuse/NEWS.md | 130 - phuse-0.2.0/phuse/R/chk_workdir.R | 52 phuse-0.2.0/phuse/R/clone_github.R | 176 +- phuse-0.2.0/phuse/R/create_dir.R | 74 - phuse-0.2.0/phuse/R/crt_workdir.R | 14 phuse-0.2.0/phuse/R/cvt_class2df.R | 50 phuse-0.2.0/phuse/R/download_script.R | 126 - phuse-0.2.0/phuse/R/download_script_files.R | 72 phuse-0.2.0/phuse/R/extract_fns.R | 146 +- phuse-0.2.0/phuse/R/gen_simplified_ts.R |only phuse-0.2.0/phuse/R/init_cfg.R | 68 phuse-0.2.0/phuse/R/merge_lists.R | 2 phuse-0.2.0/phuse/R/resolve.R | 56 phuse-0.2.0/phuse/R/run_example.R | 94 - phuse-0.2.0/phuse/R/search_api.R | 319 ++-- phuse-0.2.0/phuse/R/start_app.R | 230 +-- phuse-0.2.0/phuse/R/start_phuse.R | 151 +- phuse-0.2.0/phuse/README.md |only phuse-0.2.0/phuse/inst/docs/index.html | 38 phuse-0.2.0/phuse/inst/examples/01_html/DESCRIPTION | 14 phuse-0.2.0/phuse/inst/examples/01_html/Readme.md | 2 phuse-0.2.0/phuse/inst/examples/01_html/app.R | 106 - phuse-0.2.0/phuse/inst/examples/01_html/www/frames.html | 32 phuse-0.2.0/phuse/inst/examples/01_html/www/index.html | 84 - phuse-0.2.0/phuse/inst/examples/01_html/www/list.html | 30 phuse-0.2.0/phuse/inst/examples/01_html/www/logo.html | 18 phuse-0.2.0/phuse/inst/examples/01_html/www/top.html | 72 phuse-0.2.0/phuse/inst/examples/02_display/Readme.md | 18 phuse-0.2.0/phuse/inst/examples/02_display/app.R | 728 +++++----- phuse-0.2.0/phuse/inst/examples/02_display/www/Draw_Dist_R.yml | 68 phuse-0.2.0/phuse/inst/examples/02_display/www/links.txt | 12 phuse-0.2.0/phuse/inst/examples/02_display/www/phuse-scripts_yml.csv | 126 - phuse-0.2.0/phuse/inst/examples/02_display/www/s01.txt | 6 phuse-0.2.0/phuse/inst/examples/03_showenv/DESCRIPTION | 14 phuse-0.2.0/phuse/inst/examples/03_showenv/Readme.md | 18 phuse-0.2.0/phuse/inst/examples/03_showenv/app.R | 142 - phuse-0.2.0/phuse/inst/examples/03_showenv/draw_hist.R | 56 phuse-0.2.0/phuse/inst/examples/03_showenv/draw_hist_R.yml | 70 phuse-0.2.0/phuse/inst/examples/04_merge/DESCRIPTION | 14 phuse-0.2.0/phuse/inst/examples/04_merge/Readme.md | 10 phuse-0.2.0/phuse/inst/examples/05_d3/DESCRIPTION | 14 phuse-0.2.0/phuse/inst/examples/05_d3/app.R | 18 phuse-0.2.0/phuse/inst/examples/05_d3/www/datatips.csv | 54 phuse-0.2.0/phuse/inst/examples/05_d3/www/index.html | 486 +++--- phuse-0.2.0/phuse/inst/examples/05_d3/www/styles/circle.js | 18 phuse-0.2.0/phuse/inst/examples/05_d3/www/styles/kpi.css | 80 - phuse-0.2.0/phuse/inst/examples/05_d3/www/test.Rmd | 44 phuse-0.2.0/phuse/inst/examples/05_d3/www/test.nb.html | 472 +++--- phuse-0.2.0/phuse/inst/examples/06_dashboardjs |only phuse-0.2.0/phuse/inst/examples/07_genTS |only phuse-0.2.0/phuse/inst/tests/testthat.R | 8 phuse-0.2.0/phuse/inst/tests/testthat/rock.csv | 98 - phuse-0.2.0/phuse/inst/tests/testthat/test_check.R | 20 phuse-0.2.0/phuse/man/build_inputs.Rd | 58 phuse-0.2.0/phuse/man/build_script_df.Rd | 108 - phuse-0.2.0/phuse/man/chk_workdir.Rd | 58 phuse-0.2.0/phuse/man/clone_github.Rd | 70 phuse-0.2.0/phuse/man/create_dir.Rd | 60 phuse-0.2.0/phuse/man/crt_workdir.Rd | 66 phuse-0.2.0/phuse/man/cvt_class2df.Rd | 50 phuse-0.2.0/phuse/man/cvt_list2df.Rd | 62 phuse-0.2.0/phuse/man/download_fns.Rd | 68 phuse-0.2.0/phuse/man/download_script.Rd | 68 phuse-0.2.0/phuse/man/download_script_files.Rd | 66 phuse-0.2.0/phuse/man/echo_msg.Rd | 90 - phuse-0.2.0/phuse/man/extract_fns.Rd | 56 phuse-0.2.0/phuse/man/gen_simplified_ts.Rd |only phuse-0.2.0/phuse/man/get_inputs.Rd | 64 phuse-0.2.0/phuse/man/get_yml_inputs.Rd | 54 phuse-0.2.0/phuse/man/init_cfg.Rd | 58 phuse-0.2.0/phuse/man/is_empty.Rd | 50 phuse-0.2.0/phuse/man/merge_lists.Rd | 72 phuse-0.2.0/phuse/man/read_yml.Rd | 54 phuse-0.2.0/phuse/man/resolve.Rd | 46 phuse-0.2.0/phuse/man/run_example.Rd | 72 phuse-0.2.0/phuse/man/search_api.Rd | 112 - phuse-0.2.0/phuse/man/search_github.Rd | 106 - phuse-0.2.0/phuse/man/start_app.Rd | 88 - phuse-0.2.0/phuse/man/start_phuse.Rd | 78 - phuse-0.2.0/phuse/man/url.exists.Rd | 54 85 files changed, 3441 insertions(+), 3391 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre],
Mike Johnson [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 0.3.9 dated 2019-10-16 and 0.3.10 dated 2019-10-17
nhdplusTools-0.3.10/nhdplusTools/DESCRIPTION | 10 nhdplusTools-0.3.10/nhdplusTools/MD5 | 23 - nhdplusTools-0.3.10/nhdplusTools/NAMESPACE | 2 nhdplusTools-0.3.10/nhdplusTools/NEWS.md | 5 nhdplusTools-0.3.10/nhdplusTools/R/downloading_tools.R | 4 nhdplusTools-0.3.10/nhdplusTools/R/get_network.R | 135 +++++----- nhdplusTools-0.3.10/nhdplusTools/R/nhdplusTools.R | 41 +++ nhdplusTools-0.3.10/nhdplusTools/man/align_nhdplus_names.Rd |only nhdplusTools-0.3.10/nhdplusTools/man/get_DM.Rd | 8 nhdplusTools-0.3.10/nhdplusTools/man/get_UM.Rd | 10 nhdplusTools-0.3.10/nhdplusTools/tests/testthat/data/cida_flowlines.gpkg |only nhdplusTools-0.3.10/nhdplusTools/tests/testthat/test_align_nhdplus_names.R |only nhdplusTools-0.3.10/nhdplusTools/tests/testthat/test_get_network.R | 111 ++++++++ nhdplusTools-0.3.9/nhdplusTools/man/check7z.Rd |only nhdplusTools-0.3.9/nhdplusTools/man/downloader.Rd |only 15 files changed, 264 insertions(+), 85 deletions(-)
Title: Spatial Designs for Ecological and Environmental Surveys
Description: Provides spatially balanced designs from a set of (contiguous) potential sampling locations in a study region for point-based and for transect-based surveys. Accommodates, without detrimental effects on spatial balance, sites that the researcher wishes to include in the survey for reasons other than the current randomisation (legacy sites).
Author: Scott D. Foster
Maintainer: Scott Foster <scott.foster@data61.csiro.au>
Diff between MBHdesign versions 1.0.79 dated 2017-10-30 and 2.1.5 dated 2019-10-17
MBHdesign-1.0.79/MBHdesign/R/MBHdesign.R |only MBHdesign-1.0.79/MBHdesign/R/sysdata.rda |only MBHdesign-2.1.5/MBHdesign/DESCRIPTION | 14 - MBHdesign-2.1.5/MBHdesign/INDEX | 3 MBHdesign-2.1.5/MBHdesign/MD5 | 33 +-- MBHdesign-2.1.5/MBHdesign/NAMESPACE | 5 MBHdesign-2.1.5/MBHdesign/R/FunsForTransect8.R |only MBHdesign-2.1.5/MBHdesign/R/MBHdesign4.R |only MBHdesign-2.1.5/MBHdesign/R/onLoad.R |only MBHdesign-2.1.5/MBHdesign/build/vignette.rds |binary MBHdesign-2.1.5/MBHdesign/inst/CITATION |only MBHdesign-2.1.5/MBHdesign/inst/doc/MBHdesign.R | 121 +++++++++++ MBHdesign-2.1.5/MBHdesign/inst/doc/MBHdesign.Rnw | 204 +++++++++++++++++-- MBHdesign-2.1.5/MBHdesign/inst/doc/MBHdesign.pdf |binary MBHdesign-2.1.5/MBHdesign/man/alterInclProbs.Rd | 6 MBHdesign-2.1.5/MBHdesign/man/findDescendingTrans.Rd |only MBHdesign-2.1.5/MBHdesign/man/modEsti.Rd | 10 MBHdesign-2.1.5/MBHdesign/man/quasiSamp.Rd | 11 - MBHdesign-2.1.5/MBHdesign/man/transectSamp.Rd |only MBHdesign-2.1.5/MBHdesign/vignettes/MBHdesign.Rnw | 204 +++++++++++++++++-- MBHdesign-2.1.5/MBHdesign/vignettes/MBHdesign.bib | 18 + MBHdesign-2.1.5/MBHdesign/vignettes/MB_Hub_MED.jpg |only 22 files changed, 560 insertions(+), 69 deletions(-)
Title: A Swift, Versatile Phylogenomic and High-Throughput Sequencing
Simulator
Description: Simply and efficiently
simulates (i) variants from reference genomes and (ii) reads from both Illumina
<https://www.illumina.com/>
and Pacific Biosciences (PacBio) <https://www.pacb.com/> platforms.
It can either read reference genomes from FASTA files or simulate new ones.
Genomic variants can be simulated using summary statistics, phylogenies,
Variant Call Format (VCF) files, and coalescent simulations—the latter of which
can include selection, recombination, and demographic fluctuations.
'jackalope' can simulate single, paired-end, or mate-pair Illumina reads,
as well as PacBio reads.
These simulations include sequencing errors, mapping qualities, multiplexing,
and optical/polymerase chain reaction (PCR) duplicates.
Simulating Illumina sequencing is based on ART
by Huang et al. (2012) <doi:10.1093/bioinformatics/btr708>.
PacBio sequencing simulation is based on
SimLoRD by Stöcker et al. (2016) <doi:10.1093/bioinformatics/btw286>.
All outputs can be written to standard file formats.
Author: Lucas A. Nell [cph, aut, cre] (<https://orcid.org/0000-0003-3209-0517>)
Maintainer: Lucas A. Nell <lucas@lucasnell.com>
Diff between jackalope versions 0.1.2 dated 2019-07-11 and 0.1.3 dated 2019-10-17
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 1 + R/aaa-classes.R | 12 +++++++++--- inst/doc/jackalope-intro.html | 6 +++++- inst/doc/sub-models.html | 4 ++++ src/Makevars | 7 ++++--- src/io_vcf.cpp | 2 +- src/io_vcf.h | 3 ++- 9 files changed, 39 insertions(+), 22 deletions(-)
Title: Ensemble Tool for Predictions from Species Distribution Models
Description: A tool which allows users to create and evaluate ensembles
of species distribution model (SDM) predictions.
Functionality is offered through R functions or a GUI (R Shiny app).
This tool can assist users in identifying spatial uncertainties and
making informed conservation and management decisions. The package is
further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>)
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between eSDM versions 0.3.0 dated 2019-08-19 and 0.3.1 dated 2019-10-17
DESCRIPTION | 14 +-- MD5 | 38 +++++----- NEWS.md | 7 + R/ensemble_rescale.R | 7 + R/evaluation_metrics.R | 30 +++++-- R/model_abundance.R | 4 - R/overlay_sdm.R | 3 R/pts2poly_centroids.R | 6 + R/pts2poly_vertices.R | 2 build/vignette.rds |binary inst/CITATION | 8 +- inst/doc/example-analysis.Rmd | 27 +++---- inst/doc/example-analysis.html | 32 ++++---- inst/shiny/server_4_evalMetrics/server_4_evalMetrics.R | 2 inst/shiny/server_5_prettyPlot/server_5_prettyPlot_renderUI.R | 2 inst/shiny/ui_files/ui_0_roadmap.R | 27 +++---- inst/shiny/ui_files/ui_4_evalMetrics.R | 6 - inst/shiny/ui_files/ui_6_export.R | 2 inst/shiny/www/eSDM_manual.pdf |binary vignettes/example-analysis.Rmd | 27 +++---- 20 files changed, 136 insertions(+), 108 deletions(-)
Title: Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis
Description: Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions
that help to create regression models for some genomic models proposed by Montesinos-López, et al. (2016) <doi:10.1534/g3.116.032359>
also in Montesinos-López et al. (2018) <doi:10.1534/g3.118.200728> and Montesinos-López et al. (2018) <doi:10.2134/agronj2018.06.0362>.
Author: Francisco Javier Luna-Vazquez [aut, cre]
(<https://orcid.org/0000-0002-5370-7152>),
Fernando H. Toledo [aut],
Osval Antonio Montesinos-Lopez [aut]
(<https://orcid.org/0000-0002-3973-6547>),
Abelardo Montesinos-Lopez [aut],
Jose Crossa [aut] (<https://orcid.org/0000-0001-9429-5855>)
Maintainer: Francisco Javier Luna-Vazquez <frahik@gmail.com>
Diff between BMTME versions 1.0.11 dated 2019-10-01 and 1.0.12 dated 2019-10-17
BMTME-1.0.11/BMTME/src/Makevars.win |only BMTME-1.0.12/BMTME/DESCRIPTION | 6 +++--- BMTME-1.0.12/BMTME/MD5 | 7 +++---- BMTME-1.0.12/BMTME/NEWS.md | 7 +++++++ BMTME-1.0.12/BMTME/src/Makevars | 2 +- 5 files changed, 14 insertions(+), 8 deletions(-)
Title: Particle Tracking and Demography
Description: Obtain population density and body size structure, using video material or image sequences as input. Functions assist in the creation of image sequences from videos, background detection and subtraction, particle identification and tracking. An artificial neural network can be trained for noise filtering. The goal is to supply accurate estimates of population size, structure and/or individual behavior, for use in evolutionary and ecological studies.
Author: Marjolein Bruijning, Marco D. Visser, Caspar A. Hallmann, Eelke Jongejans
Maintainer: Marjolein Bruijning <mbruijning@princeton.edu>
Diff between trackdem versions 0.4.3 dated 2019-03-19 and 0.5 dated 2019-10-17
DESCRIPTION | 10 - MD5 | 22 +- R/resultsFunctions.R | 105 +++++----- build/vignette.rds |binary inst/doc/tutorial.R | 6 inst/doc/tutorial.Rnw | 43 ++-- inst/doc/tutorial.pdf |binary inst/python/createImageSeq.py | 410 +++++++++++++++++++++++++++++++++++++++++- man/plot.TrDm.Rd | 14 - man/runBatch.Rd | 10 - man/summary.TrDm.Rd | 6 vignettes/tutorial.Rnw | 43 ++-- 12 files changed, 539 insertions(+), 130 deletions(-)
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Eduard Szoecs [aut],
Zachary Foster [aut],
Zebulun Arendsee [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb],
Bastian Greshake Tzovaras [ctb],
Philippe Marchand [ctb],
Vinh Tran [ctb],
Maëlle Salmon [ctb],
Gaopeng Li [ctb],
Matthias Grenié [ctb],
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.9.8 dated 2019-06-28 and 0.9.9 dated 2019-10-17
taxize-0.9.8/taxize/man/eubon.Rd |only taxize-0.9.9/taxize/DESCRIPTION | 10 taxize-0.9.9/taxize/MD5 | 151 +-- taxize-0.9.9/taxize/NEWS.md | 28 taxize-0.9.9/taxize/R/class2tree.R | 11 taxize-0.9.9/taxize/R/classification.R | 9 taxize-0.9.9/taxize/R/comm2sci.R | 7 taxize-0.9.9/taxize/R/eubon.R | 49 - taxize-0.9.9/taxize/R/eubon_capabilities.R | 2 taxize-0.9.9/taxize/R/eubon_children.R | 6 taxize-0.9.9/taxize/R/eubon_hierarchy.R | 6 taxize-0.9.9/taxize/R/fungorum.R | 4 taxize-0.9.9/taxize/R/get_colid.R | 2 taxize-0.9.9/taxize/R/get_eolid.R | 4 taxize-0.9.9/taxize/R/get_nbnid.R | 7 taxize-0.9.9/taxize/R/get_tolid.R | 4 taxize-0.9.9/taxize/R/http.R | 14 taxize-0.9.9/taxize/R/id2name.R | 2 taxize-0.9.9/taxize/R/ipni_search.R | 34 taxize-0.9.9/taxize/R/iucn_summary.R | 4 taxize-0.9.9/taxize/R/limited_print.R | 6 taxize-0.9.9/taxize/R/phylomatic_format.R | 1 taxize-0.9.9/taxize/R/phylomatic_tree.R | 1 taxize-0.9.9/taxize/R/sci2comm.R | 25 taxize-0.9.9/taxize/R/synonyms.R | 60 - taxize-0.9.9/taxize/R/taxize-package.R | 4 taxize-0.9.9/taxize/R/taxize_cite.R | 4 taxize-0.9.9/taxize/R/ubio_classification.R | 1 taxize-0.9.9/taxize/R/ubio_classification_search.R | 1 taxize-0.9.9/taxize/R/ubio_id.R | 1 taxize-0.9.9/taxize/R/ubio_search.R | 1 taxize-0.9.9/taxize/R/ubio_synonyms.R | 1 taxize-0.9.9/taxize/README.md | 13 taxize-0.9.9/taxize/build/vignette.rds |binary taxize-0.9.9/taxize/inst/CITATION | 4 taxize-0.9.9/taxize/inst/doc/name_cleaning.Rmd | 49 - taxize-0.9.9/taxize/inst/doc/name_cleaning.html | 49 - taxize-0.9.9/taxize/inst/doc/taxize_vignette.Rmd | 150 ++- taxize-0.9.9/taxize/inst/doc/taxize_vignette.html | 149 ++- taxize-0.9.9/taxize/inst/vign/name_cleaning.md | 49 - taxize-0.9.9/taxize/inst/vign/taxize_vignette.Rmd | 4 taxize-0.9.9/taxize/inst/vign/taxize_vignette.md | 150 ++- taxize-0.9.9/taxize/man/classification.Rd | 11 taxize-0.9.9/taxize/man/comm2sci.Rd | 2 taxize-0.9.9/taxize/man/eubon-defunct.Rd |only taxize-0.9.9/taxize/man/eubon_capabilities.Rd | 4 taxize-0.9.9/taxize/man/eubon_children.Rd | 8 taxize-0.9.9/taxize/man/eubon_hierarchy.Rd | 8 taxize-0.9.9/taxize/man/eubon_search.Rd |only taxize-0.9.9/taxize/man/fungorum.Rd | 4 taxize-0.9.9/taxize/man/get_tolid.Rd | 2 taxize-0.9.9/taxize/man/ipni_search.Rd | 18 taxize-0.9.9/taxize/man/iucn_summary.Rd | 4 taxize-0.9.9/taxize/man/limited_print.Rd | 7 taxize-0.9.9/taxize/man/phylomatic_format-defunct.Rd | 1 taxize-0.9.9/taxize/man/phylomatic_tree-defunct.Rd | 1 taxize-0.9.9/taxize/man/sci2comm.Rd | 3 taxize-0.9.9/taxize/man/synonyms.Rd | 8 taxize-0.9.9/taxize/man/taxize-defunct.Rd | 4 taxize-0.9.9/taxize/man/ubio_classification-defunct.Rd | 1 taxize-0.9.9/taxize/man/ubio_classification_search-defunct.Rd | 1 taxize-0.9.9/taxize/man/ubio_id-defunct.Rd | 1 taxize-0.9.9/taxize/man/ubio_search-defunct.Rd | 1 taxize-0.9.9/taxize/man/ubio_synonyms-defunct.Rd | 1 taxize-0.9.9/taxize/tests/fixtures/classification_rows_param.yml | 89 - taxize-0.9.9/taxize/tests/fixtures/eubon_search.yml | 63 - taxize-0.9.9/taxize/tests/fixtures/ipni_search.yml | 54 - taxize-0.9.9/taxize/tests/fixtures/ipni_search_no_results.yml | 484 ---------- taxize-0.9.9/taxize/tests/fixtures/ipni_search_output_formats.yml | 104 +- taxize-0.9.9/taxize/tests/fixtures/synonyms_name_found_but_no_synonyms.yml |only taxize-0.9.9/taxize/tests/fixtures/synonyms_name_not_found.yml |only taxize-0.9.9/taxize/tests/testthat/Rplots.pdf |binary taxize-0.9.9/taxize/tests/testthat/test-eubon.R | 15 taxize-0.9.9/taxize/tests/testthat/test-fungorum.R | 23 taxize-0.9.9/taxize/tests/testthat/test-get_natservid.R | 12 taxize-0.9.9/taxize/tests/testthat/test-ipni_search.R | 6 taxize-0.9.9/taxize/tests/testthat/test-synonyms.R | 42 taxize-0.9.9/taxize/vignettes/name_cleaning.Rmd | 49 - taxize-0.9.9/taxize/vignettes/taxize_vignette.Rmd | 150 ++- 79 files changed, 1298 insertions(+), 960 deletions(-)
Title: Non-Invasive Pretty Printing of R Code
Description: Pretty-prints R code without changing the user's
formatting intent.
Author: Kirill Müller [aut],
Lorenz Walthert [cre, aut]
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between styler versions 1.1.1 dated 2019-05-06 and 1.2.0 dated 2019-10-17
styler-1.1.1/styler/man/wrap_if_else_while_for_multi_line_in_curly.Rd |only styler-1.2.0/styler/DESCRIPTION | 12 styler-1.2.0/styler/MD5 | 181 - styler-1.2.0/styler/NAMESPACE | 2 styler-1.2.0/styler/NEWS.md | 77 styler-1.2.0/styler/R/addins.R | 22 styler-1.2.0/styler/R/detect-alignment-utils.R |only styler-1.2.0/styler/R/detect-alignment.R |only styler-1.2.0/styler/R/indent.R | 32 styler-1.2.0/styler/R/io.R | 68 styler-1.2.0/styler/R/roxygen-examples-parse.R | 2 styler-1.2.0/styler/R/rules-line-break.R | 142 + styler-1.2.0/styler/R/rules-other.R | 9 styler-1.2.0/styler/R/rules-spacing.R | 103 styler-1.2.0/styler/R/serialize.R | 3 styler-1.2.0/styler/R/set-assert-args.R | 4 styler-1.2.0/styler/R/style-guides.R | 25 styler-1.2.0/styler/R/testing-mocks.R |only styler-1.2.0/styler/R/testing-public-api.R |only styler-1.2.0/styler/R/testing.R | 12 styler-1.2.0/styler/R/token-define.R | 53 styler-1.2.0/styler/R/transform-code.R | 2 styler-1.2.0/styler/R/transform-files.R | 3 styler-1.2.0/styler/R/ui.R | 31 styler-1.2.0/styler/R/utils-files.R | 3 styler-1.2.0/styler/R/utils-navigate-nest.R | 2 styler-1.2.0/styler/R/visit.R | 10 styler-1.2.0/styler/README.md | 28 styler-1.2.0/styler/build/vignette.rds |binary styler-1.2.0/styler/inst/doc/customizing_styler.R | 2 styler-1.2.0/styler/inst/doc/customizing_styler.Rmd | 5 styler-1.2.0/styler/inst/doc/customizing_styler.html | 27 styler-1.2.0/styler/inst/doc/detect-alignment.R |only styler-1.2.0/styler/inst/doc/detect-alignment.Rmd |only styler-1.2.0/styler/inst/doc/detect-alignment.html |only styler-1.2.0/styler/inst/doc/introducing_styler.html | 10 styler-1.2.0/styler/inst/doc/performance_improvements.html | 6 styler-1.2.0/styler/man/alignment_col1_is_named.Rd |only styler-1.2.0/styler/man/alignment_drop_comments.Rd |only styler-1.2.0/styler/man/alignment_ensure_no_closing_brace.Rd |only styler-1.2.0/styler/man/alignment_ensure_trailing_comma.Rd |only styler-1.2.0/styler/man/alignment_has_correct_spacing_around_comma.Rd |only styler-1.2.0/styler/man/alignment_has_correct_spacing_around_eq_sub.Rd |only styler-1.2.0/styler/man/alignment_serialize.Rd |only styler-1.2.0/styler/man/alignment_serialize_column.Rd |only styler-1.2.0/styler/man/alignment_serialize_line.Rd |only styler-1.2.0/styler/man/catch_style_file_output.Rd |only styler-1.2.0/styler/man/invalid_utf8.Rd |only styler-1.2.0/styler/man/needs_indention_one.Rd | 5 styler-1.2.0/styler/man/prettify_any.Rd | 4 styler-1.2.0/styler/man/rds_to_version.Rd |only styler-1.2.0/styler/man/read_utf8.Rd |only styler-1.2.0/styler/man/read_utf8_bare.Rd |only styler-1.2.0/styler/man/set_line_break_around_curly_curly.Rd |only styler-1.2.0/styler/man/set_line_break_before_curly_opening.Rd |only styler-1.2.0/styler/man/set_space_around_op.Rd |only styler-1.2.0/styler/man/style_dir.Rd | 9 styler-1.2.0/styler/man/style_pkg.Rd | 6 styler-1.2.0/styler/man/style_text_without_curly_curly.Rd |only styler-1.2.0/styler/man/token_is_on_aligned_line.Rd |only styler-1.2.0/styler/man/wrap_if_else_while_for_fun_multi_line_in_curly.Rd |only styler-1.2.0/styler/tests/testthat/alignment |only styler-1.2.0/styler/tests/testthat/curly-curly |only styler-1.2.0/styler/tests/testthat/escaping |only styler-1.2.0/styler/tests/testthat/indention_multiple/edge_strict_mixed-out.R | 18 styler-1.2.0/styler/tests/testthat/indention_multiple/fun_for_new_line-out.R | 3 styler-1.2.0/styler/tests/testthat/indention_operators/eq_sub_complex_indention-in.R | 24 styler-1.2.0/styler/tests/testthat/indention_operators/eq_sub_complex_indention-in_tree | 138 - 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Title: The Symmetric Group: Permutations of a Finite Set
Description: Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between permutations versions 1.0-4 dated 2019-04-11 and 1.0-5 dated 2019-10-17
DESCRIPTION | 10 ++++-- MD5 | 44 ++++++++++++++++------------ NAMESPACE | 4 ++ R/megaminx_plotting.R |only R/permfuns.R | 66 ++++++++++++++++++++++++++++++++++++++++--- README.md |only build/partial.rdb |binary build/vignette.rds |binary data/megaminx.rda |binary inst/doc/permutations.R | 14 ++++----- inst/doc/permutations.Rnw | 36 ++++++++++++++++------- inst/doc/permutations.pdf |binary inst/guide.R |only inst/megaminx.R | 2 - inst/megaminx_net_guides.svg |only inst/net_coords.txt |only inst/order_of_ops.Rmd |only inst/read.me | 5 +-- man/conjugate.Rd | 4 +- man/megaminx.Rd | 5 ++- man/megaminx_plotter.Rd |only man/nullperm.Rd | 6 +-- man/perm_matrix.Rd |only man/permutation.Rd | 18 ++++++++--- man/sgn.Rd | 3 + tests/tests.R | 24 +++++++++++++++ vignettes/permutations.Rnw | 36 ++++++++++++++++------- 27 files changed, 211 insertions(+), 66 deletions(-)
Title: An R Package for Calculating Linkage Disequilibrium
Description: Provides access to the LDlink API (<https://ldlink.nci.nih.gov/?tab=apiaccess>)
using the R console. This programmatic access facilitates researchers who are interested
in performing batch queries in 1000 Genomes Project data using LDlink.
Author: Timothy A. Myers [aut, cre],
Stephen J. Chanock [aut],
Mitchell J. Machiela [aut]
Maintainer: Timothy A. Myers <myersta@mail.nih.gov>
Diff between LDlinkR versions 1.0.0 dated 2019-08-01 and 1.0.1 dated 2019-10-17
DESCRIPTION | 25 ++++++++++++++++--------- MD5 | 26 ++++++++++++++++---------- R/LDhap.R | 4 ++-- R/LDmatrix.R | 4 ++-- R/LDpair.R | 4 ++-- R/LDpop.R | 4 ++-- R/LDproxy.R | 4 ++-- R/SNPchip.R | 4 ++-- R/SNPclip.R | 4 ++-- README.md | 7 ++++--- build |only inst |only man/LDlinkR-package.Rd | 3 ++- vignettes |only 14 files changed, 52 insertions(+), 37 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.5.0 dated 2019-09-07 and 0.6.0 dated 2019-10-17
DESCRIPTION | 24 MD5 | 107 ++-- NAMESPACE | 128 +++++ NEWS.md | 72 +- R/clean_names.R | 10 R/clean_parameters.R | 36 + R/compute_variances.R | 4 R/find_algorithm.R | 24 R/find_formula.R | 89 +++ R/find_parameters.R | 189 +++++++ R/find_predictors.R | 6 R/find_statistic.R | 19 R/get_data.R | 922 +++++++++++++------------------------ R/get_parameters.R | 269 +++++++++- R/get_predictors.R | 3 R/get_priors.R | 37 + R/get_statistic.R |only R/get_varcov.R |only R/get_variances.R | 4 R/helper_functions.R | 77 +-- R/is_model.R | 28 + R/is_model_supported.R | 188 ++++--- R/is_multivariate.R | 2 R/link_function.R | 26 + R/link_inverse.R | 26 + R/model_info.R | 119 ++++ R/n_obs.R | 48 + R/print.easystats_check.R |only R/utils_get_data.R |only README.md | 55 +- build/partial.rdb |binary man/find_parameters.Rd | 10 man/get_data.Rd | 21 man/get_statistic.Rd |only man/get_varcov.Rd |only man/is_model_supported.Rd | 8 man/model_info.Rd | 7 tests/testthat/test-GLMMadaptive.R | 2 tests/testthat/test-betareg.R | 3 tests/testthat/test-brms.R | 2 tests/testthat/test-clean_names.R | 35 + tests/testthat/test-clm2.R | 3 tests/testthat/test-coxme.R | 3 tests/testthat/test-coxph.R | 3 tests/testthat/test-crch.R | 9 tests/testthat/test-feis.R | 14 tests/testthat/test-felm.R | 4 tests/testthat/test-format.R |only tests/testthat/test-gam.R | 9 tests/testthat/test-glmmTMB.R | 4 tests/testthat/test-hurdle.R | 6 tests/testthat/test-logistf.R | 3 tests/testthat/test-multinom.R | 2 tests/testthat/test-namespace.R | 3 tests/testthat/test-panelr.R | 19 tests/testthat/test-plm.R | 15 tests/testthat/test-truncreg.R | 3 tests/testthat/test-zeroinfl.R | 6 58 files changed, 1726 insertions(+), 980 deletions(-)
Title: Exploratory Graphics for Pharmacometrics
Description: Supports a structured approach
for exploring PKPD data <https://opensource.nibr.com/xgx>. It also
contains helper functions for enabling the modeler to follow best R
practices (by appending the program name, figure name location, and
draft status to each plot). In addition, it enables the modeler to
follow best graphical practices (by providing a theme that
reduces chart ink, and by providing time-scale, log-scale, and
reverse-log-transform-scale functions for more readable axes).
Finally, it provides some data checking and summarizing functions for
rapidly exploring pharmacokinetics and pharmacodynamics (PKPD) datasets.
Author: Andrew Stein [aut, cre],
Alison Margolskee [aut],
Fariba Khanshan [aut],
Konstantin Krismer [aut] (<https://orcid.org/0000-0001-8994-3416>),
Matthew Fidler [ctb] (<https://orcid.org/0000-0001-8538-6691>),
Novartis Pharma AG [cph, fnd]
Maintainer: Andrew Stein <andy.stein@gmail.com>
Diff between xgxr versions 1.0.4 dated 2019-10-10 and 1.0.5 dated 2019-10-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 7 ++++++- R/xgx_stat_ci.R | 23 ++++++++++++++--------- R/xgx_theme_set.R | 3 +-- inst/doc/sad_pkpd.html | 32 ++++++++++++++++---------------- inst/doc/theoph.html | 20 ++++++++++---------- inst/doc/xgxr_overview.html | 38 +++++++++++++++++++------------------- 8 files changed, 76 insertions(+), 67 deletions(-)
Title: Maximum Likelihood Estimation of DNA Methylation and
Hydroxymethylation Proportions
Description: Maximum likelihood estimates (MLE) of the proportions
of 5-mC and 5-hmC in the DNA using information from BS-conversion,
TAB-conversion, and oxBS-conversion methods. One can use information from all three methods
or any combination of two of them. Estimates are based on Binomial model by
Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and
Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>.
Author: Samara Kiihl [aut, cre],
Maria Jose Martinez-Garrido [aut],
Arce Domingo-Relloso [aut],
Jose Bermudez [aut],
Maria Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samara@ime.unicamp.br>
Diff between MLML2R versions 0.3.2 dated 2019-04-06 and 0.3.3 dated 2019-10-17
MLML2R-0.3.2/MLML2R/inst/doc/vignette.pdf |only MLML2R-0.3.2/MLML2R/vignettes/vignette.html |only MLML2R-0.3.3/MLML2R/DESCRIPTION | 10 +-- MLML2R-0.3.3/MLML2R/MD5 | 13 ++--- MLML2R-0.3.3/MLML2R/build/vignette.rds |binary MLML2R-0.3.3/MLML2R/inst/doc/vignette.R | 3 - MLML2R-0.3.3/MLML2R/inst/doc/vignette.Rmd | 72 ++++++++++++---------------- MLML2R-0.3.3/MLML2R/inst/doc/vignette.html |only MLML2R-0.3.3/MLML2R/vignettes/vignette.Rmd | 72 ++++++++++++---------------- 9 files changed, 77 insertions(+), 93 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.2.6 dated 2019-09-01 and 0.2.7 dated 2019-10-17
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/one_hot.R | 8 +++++++- R/perf.R | 4 ++-- R/scorecard.R | 10 ++++++++++ R/woebin.R | 2 +- inst/doc/demo.html | 4 ++-- man/one_hot.Rd | 2 +- man/perf_cv.Rd | 2 +- man/woebin.Rd | 2 +- 11 files changed, 43 insertions(+), 22 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] (<https://orcid.org/0000-0003-2392-6140>),
Hisaji Ono [ctb],
Richard Dunlap [ctb],
Matthieu Stigler [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>)
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.4-1 dated 2019-08-06 and 0.4-2 dated 2019-10-17
DESCRIPTION | 19 +++++++++++++------ MD5 | 16 +++++++++------- NAMESPACE | 4 ++-- R/classInt.R | 11 ++++++++++- R/logLik.R |only man/classIntervals.Rd | 2 +- man/logLik.classIntervals.Rd |only src/fish1.f | 6 ++++-- tests/test_Unique.R | 15 +++++++++++++++ tests/test_Unique.Rout.save | 15 +++++++++++++++ 10 files changed, 69 insertions(+), 19 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>),
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>), Dimensions (<https://www.dimensions.ai/>), Cochrane Library (<http://www.cochranelibrary.com/>)
and PubMed (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 2.2.1 dated 2019-06-27 and 2.3.0 dated 2019-10-17
bibliometrix-2.2.1/bibliometrix/inst/logo/logo.jpg |only bibliometrix-2.3.0/bibliometrix/DESCRIPTION | 14 bibliometrix-2.3.0/bibliometrix/MD5 | 72 - bibliometrix-2.3.0/bibliometrix/NAMESPACE | 5 bibliometrix-2.3.0/bibliometrix/NEWS | 14 bibliometrix-2.3.0/bibliometrix/R/bib2df.R | 17 bibliometrix-2.3.0/bibliometrix/R/biblioAnalysis.R | 13 bibliometrix-2.3.0/bibliometrix/R/bibtag.R | 13 bibliometrix-2.3.0/bibliometrix/R/cocMatrix.R | 3 bibliometrix-2.3.0/bibliometrix/R/convert2df.R | 44 bibliometrix-2.3.0/bibliometrix/R/dimensions2df.R |only bibliometrix-2.3.0/bibliometrix/R/fieldByYear.R |only bibliometrix-2.3.0/bibliometrix/R/histNetwork.R | 5 bibliometrix-2.3.0/bibliometrix/R/metaTagExtraction.R | 10 bibliometrix-2.3.0/bibliometrix/R/net2VOSviewer.R |only bibliometrix-2.3.0/bibliometrix/R/networkPlot.R | 590 ++++++---- bibliometrix-2.3.0/bibliometrix/R/readFiles.R | 5 bibliometrix-2.3.0/bibliometrix/R/summary.bibliometrix.R | 7 bibliometrix-2.3.0/bibliometrix/R/termExtraction.R | 2 bibliometrix-2.3.0/bibliometrix/R/thematicMap.R | 13 bibliometrix-2.3.0/bibliometrix/R/timeslice.R | 4 bibliometrix-2.3.0/bibliometrix/build/partial.rdb |binary bibliometrix-2.3.0/bibliometrix/data/bibtag.rda |binary bibliometrix-2.3.0/bibliometrix/inst/biblioshiny/rsconnect/shinyapps.io/massimoaria/biblioshiny.dcf | 4 bibliometrix-2.3.0/bibliometrix/inst/biblioshiny/server.R | 358 ++++-- bibliometrix-2.3.0/bibliometrix/inst/biblioshiny/ui.R | 154 ++ bibliometrix-2.3.0/bibliometrix/inst/doc/bibliometrix-vignette.html | 42 bibliometrix-2.3.0/bibliometrix/inst/logo/logo.png |only bibliometrix-2.3.0/bibliometrix/man/bib2df.Rd | 6 bibliometrix-2.3.0/bibliometrix/man/bibtag.Rd | 13 bibliometrix-2.3.0/bibliometrix/man/cochrane2df.Rd | 6 bibliometrix-2.3.0/bibliometrix/man/convert2df.Rd | 16 bibliometrix-2.3.0/bibliometrix/man/dimensions2df.Rd |only bibliometrix-2.3.0/bibliometrix/man/fieldByYear.Rd |only bibliometrix-2.3.0/bibliometrix/man/histNetwork.Rd | 4 bibliometrix-2.3.0/bibliometrix/man/isi2df.Rd | 4 bibliometrix-2.3.0/bibliometrix/man/isibib2df.Rd | 4 bibliometrix-2.3.0/bibliometrix/man/net2VOSviewer.Rd |only bibliometrix-2.3.0/bibliometrix/man/networkPlot.Rd | 22 bibliometrix-2.3.0/bibliometrix/man/pubmed2df.Rd | 4 bibliometrix-2.3.0/bibliometrix/man/scopus2df.Rd | 4 41 files changed, 975 insertions(+), 497 deletions(-)
Title: Themes for Base Graphics Plots
Description: Functions to create and select graphical themes for the base plotting system. Contains: 1) several custom pre-made themes 2) mechanism for creating new themes by making persistent changes to the graphical parameters of base plots.
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between basetheme versions 0.1.1 dated 2019-07-18 and 0.1.2 dated 2019-10-17
DESCRIPTION | 6 MD5 | 18 - NAMESPACE | 2 NEWS | 20 + R/basetheme.R | 6 R/coltools.R |only R/themes.R | 869 +++++++++++++++++++++++++++++-------------------------- R/utils.R | 11 man/basetheme.Rd | 6 man/colshade.Rd |only man/lab2col.Rd |only man/num2col.Rd |only 12 files changed, 510 insertions(+), 428 deletions(-)
Title: DTR Estimation and Inference via G-Estimation, Dynamic WOLS,
Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv)
Description: Dynamic treatment regime estimation and inference via G-estimation,
dynamic weighted ordinary least squares (dWOLS) and Q-learning. Inference
via bootstrap and (for G-estimation) recursive sandwich estimation. Estimation
and inference for survival outcomes via Dynamic Weighted Survival Modeling
(DWSurv).
Author: Michael Wallace, Erica E M Moodie, David A Stephens and Gabrielle Simoneau
Maintainer: Michael Wallace <michael.wallace@uwaterloo.ca>
Diff between DTRreg versions 1.4 dated 2019-08-21 and 1.5 dated 2019-10-17
DESCRIPTION | 9 +-- MD5 | 10 ++-- NAMESPACE | 7 ++- R/DTRreg.R | 115 +++++++++++++++++++++++++++++++++++--------------- man/confint.DTRreg.Rd | 12 ++--- man/plot.DTRreg.Rd | 5 -- 6 files changed, 105 insertions(+), 53 deletions(-)
Title: Maximum Likelihood Analysis of Circular Data
Description: A series of wrapper functions to
implement the 10 maximum likelihood models of animal orientation
described by Schnute and Groot (1992) <DOI:10.1016/S0003-3472(05)80068-5>. The
functions also include the ability to use different optimizer
methods and calculate various model selection metrics (i.e., AIC,
AICc, BIC).
Author: Robert Fitak [aut, cre],
Sönke Johnsen [aut]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between CircMLE versions 0.2.1 dated 2018-02-20 and 0.2.2 dated 2019-10-17
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/M1.r | 3 ++- R/M2A.r | 3 ++- R/M2B.r | 3 ++- R/M2C.r | 3 ++- R/M3A.r | 3 ++- R/M3B.r | 3 ++- R/M4A.r | 3 ++- R/M4B.r | 3 ++- R/M5A.r | 3 ++- R/M5B.r | 3 ++- R/check_data.r | 3 ++- R/plot_circMLE.r | 18 +++++++++++------- README.md | 3 +++ 15 files changed, 54 insertions(+), 36 deletions(-)
Title: Interface to 'Container Instances', 'Docker Registry' and
'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/overview/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes),
Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising
MMLS),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureContainers versions 1.1.0 dated 2019-07-15 and 1.1.1 dated 2019-10-17
DESCRIPTION | 9 ++++----- MD5 | 17 +++++++++-------- NEWS.md | 4 ++++ R/add_aci_methods.R | 8 ++++---- R/add_aks_methods.R | 10 ++++++++-- README.md | 9 +++++---- build/vignette.rds |binary man/create_aci.Rd | 4 ++-- man/create_aks.Rd | 3 ++- man/figures |only 10 files changed, 38 insertions(+), 26 deletions(-)
More information about AzureContainers at CRAN
Permanent link
Title: Methods for Adaptive Shrinkage, using Empirical Bayes
Description: The R package 'ashr' implements an Empirical Bayes
approach for large-scale hypothesis testing and false discovery
rate (FDR) estimation based on the methods proposed in
M. Stephens, 2016, "False discovery rates: a new deal",
<DOI:10.1093/biostatistics/kxw041>. These methods can be applied
whenever two sets of summary statistics---estimated effects and
standard errors---are available, just as 'qvalue' can be applied
to previously computed p-values. Two main interfaces are
provided: ash(), which is more user-friendly; and ash.workhorse(),
which has more options and is geared toward advanced users. The
ash() and ash.workhorse() also provides a flexible modeling
interface that can accomodate a variety of likelihoods (e.g.,
normal, Poisson) and mixture priors (e.g., uniform, normal).
Author: Matthew Stephens [aut],
Peter Carbonetto [aut, cre],
Chaoxing Dai [ctb],
David Gerard [aut],
Mengyin Lu [aut],
Lei Sun [aut],
Jason Willwerscheid [aut],
Nan Xiao [aut],
Mazon Zeng [ctb]
Maintainer: Peter Carbonetto <pcarbo@uchicago.edu>
Diff between ashr versions 2.2-32 dated 2019-02-22 and 2.2-39 dated 2019-10-17
ashr-2.2-32/ashr/tests/testthat/test_gsanity_check.R |only ashr-2.2-39/ashr/DESCRIPTION | 8 ashr-2.2-39/ashr/MD5 | 23 - ashr-2.2-39/ashr/NAMESPACE | 1 ashr-2.2-39/ashr/R/ash.R | 265 +++++++------------ ashr-2.2-39/ashr/R/ash_pois.R |only ashr-2.2-39/ashr/R/lik.R | 4 ashr-2.2-39/ashr/R/mix_opt.R | 15 - ashr-2.2-39/ashr/inst/doc/adaptive_shrinkage.html | 142 +++++++--- ashr-2.2-39/ashr/man/ash.Rd | 48 +-- ashr-2.2-39/ashr/man/ash_pois.Rd |only ashr-2.2-39/ashr/tests/testthat/test_binom.R | 28 +- ashr-2.2-39/ashr/tests/testthat/test_pois.R | 20 + ashr-2.2-39/ashr/tests/testthat/test_pois_data.Rds |only ashr-2.2-39/ashr/tests/testthat/test_prior.R |only 15 files changed, 299 insertions(+), 255 deletions(-)
Title: Spatial Association Between Regionalizations
Description: Calculates a degree of spatial association between regionalizations
or categorical maps using the information-theoretical V-measure
(Nowosad and Stepinski (2018) <doi:10.1080/13658816.2018.1511794>). It also
offers an R implementation of the MapCurve method
(Hargrove et al. (2006) <doi:10.1007/s10109-006-0025-x>).
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Tomasz Stepinski [aut],
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between sabre versions 0.3.1 dated 2019-07-18 and 0.3.2 dated 2019-10-17
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/mapcurves.R | 2 +- R/vmeasure.R | 9 +++++++-- R/vmeasure_calc.R | 8 ++++++-- build/vignette.rds |binary inst/doc/sabre.html | 10 +++++++--- man/mapcurves.Rd | 2 +- man/sabre-package.Rd | 2 +- tests/testthat/test-eco-us.R | 9 ++++----- tests/testthat/test-mapcurves.R | 10 +++++----- tests/testthat/test-vmeasure.R | 8 ++++---- 12 files changed, 51 insertions(+), 39 deletions(-)
Title: JavaScript Charts Tool
Description: Provides an R interface for using 'AmCharts' Library. Based on
'htmlwidgets', it provides a global architecture to generate 'JavaScript' source
code for charts. Most of classes in the library have their equivalent in R
with S4 classes; for those classes, not all properties have been referenced but
can easily be added in the constructors. Complex properties (e.g. 'JavaScript'
object) can be passed as named list. See examples at <http://datastorm-
open.github.io/introduction_ramcharts/> and <http://www.amcharts.com/> for
more information about the library. The package includes the free version
of 'AmCharts' Library. Its only limitation is a small link to the web site
displayed on your charts. If you enjoy this library, do not hesitate to refer
to this page <http://www.amcharts.com/online-store/> to purchase a licence,
and thus support its creators and get a period of Priority Support. See also
<http://www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Benoit Thieurmel [aut, cre],
Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory
htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/),
Jeffery Petit [aut, ctb],
Elena Salette [aut, ctb],
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between rAmCharts versions 2.1.11 dated 2019-08-28 and 2.1.12 dated 2019-10-17
DESCRIPTION | 7 MD5 | 18 R/chart_amBoxplot.R | 2 R/chart_amTimeSeries.R | 188 ++++++++-- R/shiny_modules_timeSeries.R | 33 + R/union_AmCharts.R | 10 inst/htmlwidgets/lib/plugins/export/libs/classList.js/classList.min.js | 4 inst/htmlwidgets/ramcharts_base.js | 4 man/amTimeSeries.Rd | 116 +++++- man/rAmCharts-shinymodules-ts.Rd | 30 + 10 files changed, 347 insertions(+), 65 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-09 1.0
Title: Set of Common Tools for Forecast Verification
Description: Set of tools to verify forecasts through the computation of typical
prediction scores against one or more observational datasets or reanalyses (a
reanalysis being a physical extrapolation of observations that relies on the
equations from a model, not a pure observational dataset). Intended for seasonal
to decadal climate forecasts although can be useful to verify other kinds of
forecasts. The package can be helpful in climate sciences for other purposes
than forecasting.
Author: BSC-CNS [aut, cph],
Virginie Guemas [aut],
Nicolau Manubens [aut],
An-Chi Ho [ctb, cre],
Nuria Perez-Zanon [ctb],
Javier Garcia-Serrano [aut],
Neven Fuckar [aut],
Louis-Philippe Caron [aut],
Omar Bellprat [aut],
Luis Rodrigues [aut],
Veronica Torralba [aut],
Alasdair Hunter [aut],
Chloe Prodhomme [aut],
Martin Menegoz [aut],
Domingo Manubens [ctb],
Constantin Ardilouze [ctb],
Lauriane Batte [ctb],
Fabian Lienert [ctb],
Julia Giner [ctb],
Jean-Philippe Baudouin [ctb],
Nube Gonzalez [ctb],
Ludovic Auger [ctb],
Nicola Cortesi [ctb],
Eleftheria Exarchou [ctb],
Ruben Cruz [ctb],
Isabel Andreu-Burillo [ctb],
Ramiro Saurral [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between s2dverification versions 2.8.5 dated 2019-03-19 and 2.8.6 dated 2019-10-17
s2dverification-2.8.5/s2dverification/R/ConfigAddEntry.R |only s2dverification-2.8.5/s2dverification/R/ConfigFileCreate.R |only s2dverification-2.8.5/s2dverification/R/ConfigFileSave.R |only s2dverification-2.8.5/s2dverification/R/ConfigRemoveDefinition.R |only s2dverification-2.8.5/s2dverification/R/ConfigRemoveEntry.R |only s2dverification-2.8.5/s2dverification/R/ConfigShowDefinitions.R |only s2dverification-2.8.6/s2dverification/DESCRIPTION | 27 s2dverification-2.8.6/s2dverification/MD5 | 294 +- s2dverification-2.8.6/s2dverification/NAMESPACE | 136 + s2dverification-2.8.6/s2dverification/NEWS.md |only s2dverification-2.8.6/s2dverification/R/ACC.R | 97 s2dverification-2.8.6/s2dverification/R/Alpha.R | 31 s2dverification-2.8.6/s2dverification/R/AnimateMap.R | 159 + s2dverification-2.8.6/s2dverification/R/Ano.R | 75 s2dverification-2.8.6/s2dverification/R/Ano_CrossValid.R | 34 s2dverification-2.8.6/s2dverification/R/ArrayToNetCDF.R | 229 ++ s2dverification-2.8.6/s2dverification/R/BrierScore.R | 88 s2dverification-2.8.6/s2dverification/R/CDORemap.R | 209 + s2dverification-2.8.6/s2dverification/R/Clim.R | 50 s2dverification-2.8.6/s2dverification/R/Cluster.R | 112 + s2dverification-2.8.6/s2dverification/R/ColorBar.R | 151 + s2dverification-2.8.6/s2dverification/R/Composite.R | 132 - s2dverification-2.8.6/s2dverification/R/ConfigApplyMatchingEntries.R | 56 s2dverification-2.8.6/s2dverification/R/ConfigEditDefinition.R | 52 s2dverification-2.8.6/s2dverification/R/ConfigEditEntry.R | 178 + s2dverification-2.8.6/s2dverification/R/ConfigFileOpen.R | 255 ++ s2dverification-2.8.6/s2dverification/R/ConfigShowSimilarEntries.R | 61 s2dverification-2.8.6/s2dverification/R/ConfigShowTable.R | 52 s2dverification-2.8.6/s2dverification/R/Consist_Trend.R | 70 s2dverification-2.8.6/s2dverification/R/Corr.R | 111 + s2dverification-2.8.6/s2dverification/R/EOF.R | 107 s2dverification-2.8.6/s2dverification/R/Enlarge.R | 19 s2dverification-2.8.6/s2dverification/R/Eno.R | 51 s2dverification-2.8.6/s2dverification/R/EnoNew.R | 56 s2dverification-2.8.6/s2dverification/R/Filter.R | 39 s2dverification-2.8.6/s2dverification/R/FitAcfCoef.R | 28 s2dverification-2.8.6/s2dverification/R/FitAutocor.R | 24 s2dverification-2.8.6/s2dverification/R/GenSeries.R | 23 s2dverification-2.8.6/s2dverification/R/Histo2Hindcast.R | 67 s2dverification-2.8.6/s2dverification/R/IniListDims.R | 29 s2dverification-2.8.6/s2dverification/R/InsertDim.R | 23 s2dverification-2.8.6/s2dverification/R/LeapYear.R | 19 s2dverification-2.8.6/s2dverification/R/Load.R | 843 +++++++ s2dverification-2.8.6/s2dverification/R/Mean1Dim.R | 24 s2dverification-2.8.6/s2dverification/R/MeanListDim.R | 22 s2dverification-2.8.6/s2dverification/R/NAO.R | 119 + s2dverification-2.8.6/s2dverification/R/Plot2VarsVsLTime.R | 88 s2dverification-2.8.6/s2dverification/R/PlotACC.R | 94 s2dverification-2.8.6/s2dverification/R/PlotAno.R | 77 s2dverification-2.8.6/s2dverification/R/PlotBoxWhisker.R | 105 s2dverification-2.8.6/s2dverification/R/PlotClim.R | 60 s2dverification-2.8.6/s2dverification/R/PlotEquiMap.R | 217 + s2dverification-2.8.6/s2dverification/R/PlotLayout.R | 200 + s2dverification-2.8.6/s2dverification/R/PlotMatrix.R |only s2dverification-2.8.6/s2dverification/R/PlotSection.R | 48 s2dverification-2.8.6/s2dverification/R/PlotStereoMap.R | 146 + s2dverification-2.8.6/s2dverification/R/PlotVsLTime.R | 102 s2dverification-2.8.6/s2dverification/R/ProbBins.R | 70 s2dverification-2.8.6/s2dverification/R/ProjectField.R | 97 s2dverification-2.8.6/s2dverification/R/RMS.R | 103 s2dverification-2.8.6/s2dverification/R/RMSSS.R | 79 s2dverification-2.8.6/s2dverification/R/RatioRMS.R | 106 s2dverification-2.8.6/s2dverification/R/RatioSDRMS.R | 75 s2dverification-2.8.6/s2dverification/R/Regression.R | 64 s2dverification-2.8.6/s2dverification/R/SVD.R | 102 s2dverification-2.8.6/s2dverification/R/Season.R | 40 s2dverification-2.8.6/s2dverification/R/SelIndices.R | 26 s2dverification-2.8.6/s2dverification/R/Smoothing.R | 37 s2dverification-2.8.6/s2dverification/R/Spectrum.R | 40 s2dverification-2.8.6/s2dverification/R/Spread.R | 82 s2dverification-2.8.6/s2dverification/R/StatSeasAtlHurr.R | 70 s2dverification-2.8.6/s2dverification/R/Subset.R | 36 s2dverification-2.8.6/s2dverification/R/ToyModel.R | 107 s2dverification-2.8.6/s2dverification/R/Trend.R | 66 s2dverification-2.8.6/s2dverification/R/UltimateBrier.R | 105 s2dverification-2.8.6/s2dverification/R/clim.palette.R | 34 s2dverification-2.8.6/s2dverification/R/s2dverification.R |only s2dverification-2.8.6/s2dverification/R/sampleDepthData.R |only s2dverification-2.8.6/s2dverification/R/sampleMap.R |only s2dverification-2.8.6/s2dverification/R/sampleTimeSeries.R |only s2dverification-2.8.6/s2dverification/data/sampleDepthData.RData |binary s2dverification-2.8.6/s2dverification/data/sampleMap.RData |binary s2dverification-2.8.6/s2dverification/data/sampleTimeSeries.RData |binary s2dverification-2.8.6/s2dverification/man/ACC.Rd | 161 - s2dverification-2.8.6/s2dverification/man/Alpha.Rd | 37 s2dverification-2.8.6/s2dverification/man/AnimateMap.Rd | 329 +-- s2dverification-2.8.6/s2dverification/man/Ano.Rd | 51 s2dverification-2.8.6/s2dverification/man/Ano_CrossValid.Rd | 49 s2dverification-2.8.6/s2dverification/man/ArrayToNetCDF.Rd | 181 - s2dverification-2.8.6/s2dverification/man/BrierScore.Rd | 114 - s2dverification-2.8.6/s2dverification/man/CDORemap.Rd | 163 + s2dverification-2.8.6/s2dverification/man/Clim.Rd | 93 s2dverification-2.8.6/s2dverification/man/Cluster.Rd | 164 - s2dverification-2.8.6/s2dverification/man/ColorBar.Rd | 276 +- s2dverification-2.8.6/s2dverification/man/Composite.Rd | 92 s2dverification-2.8.6/s2dverification/man/ConfigApplyMatchingEntries.Rd | 96 s2dverification-2.8.6/s2dverification/man/ConfigEditDefinition.Rd | 64 s2dverification-2.8.6/s2dverification/man/ConfigEditEntry.Rd | 126 - s2dverification-2.8.6/s2dverification/man/ConfigFileOpen.Rd | 277 +- s2dverification-2.8.6/s2dverification/man/ConfigShowSimilarEntries.Rd | 121 - s2dverification-2.8.6/s2dverification/man/ConfigShowTable.Rd | 62 s2dverification-2.8.6/s2dverification/man/Consist_Trend.Rd | 98 s2dverification-2.8.6/s2dverification/man/Corr.Rd | 183 - s2dverification-2.8.6/s2dverification/man/EOF.Rd | 171 - s2dverification-2.8.6/s2dverification/man/Enlarge.Rd | 31 s2dverification-2.8.6/s2dverification/man/Eno.Rd | 65 s2dverification-2.8.6/s2dverification/man/EnoNew.Rd | 71 s2dverification-2.8.6/s2dverification/man/Filter.Rd | 45 s2dverification-2.8.6/s2dverification/man/FitAcfCoef.Rd | 34 s2dverification-2.8.6/s2dverification/man/FitAutocor.Rd | 27 s2dverification-2.8.6/s2dverification/man/GenSeries.Rd | 27 s2dverification-2.8.6/s2dverification/man/Histo2Hindcast.Rd | 98 s2dverification-2.8.6/s2dverification/man/IniListDims.Rd | 38 s2dverification-2.8.6/s2dverification/man/InsertDim.Rd | 29 s2dverification-2.8.6/s2dverification/man/LeapYear.Rd | 17 s2dverification-2.8.6/s2dverification/man/Load.Rd | 1094 ++++++---- s2dverification-2.8.6/s2dverification/man/Mean1Dim.Rd | 42 s2dverification-2.8.6/s2dverification/man/MeanListDim.Rd | 30 s2dverification-2.8.6/s2dverification/man/NAO.Rd | 181 - s2dverification-2.8.6/s2dverification/man/Plot2VarsVsLTime.Rd | 188 - s2dverification-2.8.6/s2dverification/man/PlotACC.Rd | 195 - s2dverification-2.8.6/s2dverification/man/PlotAno.Rd | 180 - s2dverification-2.8.6/s2dverification/man/PlotBoxWhisker.Rd | 184 - s2dverification-2.8.6/s2dverification/man/PlotClim.Rd | 154 - s2dverification-2.8.6/s2dverification/man/PlotEquiMap.Rd | 485 ++-- s2dverification-2.8.6/s2dverification/man/PlotLayout.Rd | 382 ++- s2dverification-2.8.6/s2dverification/man/PlotMatrix.Rd |only s2dverification-2.8.6/s2dverification/man/PlotSection.Rd | 135 - s2dverification-2.8.6/s2dverification/man/PlotStereoMap.Rd | 310 +- s2dverification-2.8.6/s2dverification/man/PlotVsLTime.Rd | 214 - s2dverification-2.8.6/s2dverification/man/ProbBins.Rd | 111 - s2dverification-2.8.6/s2dverification/man/ProjectField.Rd | 121 - s2dverification-2.8.6/s2dverification/man/RMS.Rd | 159 - s2dverification-2.8.6/s2dverification/man/RMSSS.Rd | 118 - s2dverification-2.8.6/s2dverification/man/RatioRMS.Rd | 135 - s2dverification-2.8.6/s2dverification/man/RatioSDRMS.Rd | 115 - s2dverification-2.8.6/s2dverification/man/Regression.Rd | 89 s2dverification-2.8.6/s2dverification/man/SVD.Rd | 156 - s2dverification-2.8.6/s2dverification/man/Season.Rd | 61 s2dverification-2.8.6/s2dverification/man/SelIndices.Rd | 35 s2dverification-2.8.6/s2dverification/man/Smoothing.Rd | 47 s2dverification-2.8.6/s2dverification/man/Spectrum.Rd | 48 s2dverification-2.8.6/s2dverification/man/Spread.Rd | 125 - s2dverification-2.8.6/s2dverification/man/StatSeasAtlHurr.Rd | 100 s2dverification-2.8.6/s2dverification/man/Subset.Rd | 59 s2dverification-2.8.6/s2dverification/man/ToyModel.Rd | 159 - s2dverification-2.8.6/s2dverification/man/Trend.Rd | 106 s2dverification-2.8.6/s2dverification/man/UltimateBrier.Rd | 170 - s2dverification-2.8.6/s2dverification/man/clim.palette.Rd | 29 s2dverification-2.8.6/s2dverification/man/s2dverification.Rd | 38 s2dverification-2.8.6/s2dverification/man/sampleDepthData.Rd | 44 s2dverification-2.8.6/s2dverification/man/sampleMap.Rd | 64 s2dverification-2.8.6/s2dverification/man/sampleTimeSeries.Rd | 71 s2dverification-2.8.6/s2dverification/tests |only 154 files changed, 11548 insertions(+), 4404 deletions(-)
More information about s2dverification at CRAN
Permanent link
Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.rsp versions 0.43.1 dated 2019-02-05 and 0.43.2 dated 2019-10-17
DESCRIPTION | 8 MD5 | 156 NAMESPACE | 5 NEWS | 16 R/RspDocument.R | 5 R/RspResponse.R | 5 build/vignette.rds |binary inst/doc/Dynamic_document_creation_using_RSP.pdf |binary inst/doc/Dynamic_document_creation_using_RSP.tex.rsp | 2550 +++++----- inst/doc/RSP_intro.html | 17 inst/doc/RSP_refcard.pdf |binary inst/doc/RSP_refcard.tex.rsp | 596 +- inst/doc/R_packages-LaTeX_vignettes.pdf |binary inst/doc/R_packages-RSP_vignettes.html | 2 inst/doc/R_packages-RSP_vignettes.md.rsp | 142 inst/doc/R_packages-Vignettes_prior_to_R300.pdf |binary inst/doc/R_packages-Vignettes_prior_to_R300.tex.rsp | 298 - inst/doc/incl/example.txt.rsp | 10 inst/exData/random-args.txt.rsp | 2 inst/exData/random.txt.rsp | 2 inst/rsp/R/help/index.html.rsp | 274 - inst/rsp/R/index.html.rsp | 52 inst/rsp/R/settings/index.html.rsp | 60 inst/rsp/R/settings/language.html.rsp | 176 inst/rsp/R/settings/options.html.rsp | 284 - inst/rsp/R/settings/par.html.rsp | 334 - inst/rsp/R/system/environmentVariables.html.rsp | 198 inst/rsp/R/system/index.html.rsp | 54 inst/rsp/R/system/ll.html.rsp | 126 inst/rsp/R/system/packageDetails.html.rsp | 214 inst/rsp/R/system/packages.html.rsp | 158 inst/rsp/R/system/systemDetails.html.rsp | 362 - inst/rsp/index.html.rsp | 300 - inst/rsp/rsp/demos/index.html.rsp | 50 inst/rsp/rsp/docs/figures.html.rsp | 112 inst/rsp/rsp/docs/helloWorld.html.rsp | 46 inst/rsp/rsp/docs/includes.html.rsp | 142 inst/rsp/rsp/docs/index.html.rsp | 308 - inst/rsp/rsp/index.html.rsp | 50 inst/rsp_LoremIpsum/LoremIpsum.Rnw.rsp | 68 inst/rsp_LoremIpsum/LoremIpsum.asciidoc.Rnw.rsp | 38 inst/rsp_LoremIpsum/LoremIpsum.asciidoc.rsp | 56 inst/rsp_LoremIpsum/LoremIpsum.html.rsp | 88 inst/rsp_LoremIpsum/LoremIpsum.knitr.Rnw.rsp | 66 inst/rsp_LoremIpsum/LoremIpsum.md.rsp | 48 inst/rsp_LoremIpsum/LoremIpsum.tex.rsp | 82 inst/rsp_LoremIpsum/LoremIpsum.txt.rsp | 24 inst/rsp_LoremIpsum/LoremIpsum.txt.rsp.rsp | 30 inst/rsp_examples/LoremIpsum.tex.rsp | 147 inst/rsp_examples/R_packages-Static_PDF_and_HTML_vignettes.pdf.asis.rsp | 16 inst/rsp_examples/R_packages-Static_PDF_and_HTML_vignettes.tex.rsp | 76 inst/rsp_examples/favicon.md.rsp | 40 inst/rsp_tests/R-vignette.tex.rsp | 36 inst/rsp_tests/birth.txt.rsp | 4 inst/rsp_tests/comments.txt.rsp | 28 inst/rsp_tests/directives,ifeq.txt.rsp | 64 inst/rsp_tests/example.md.rsp | 14 inst/rsp_tests/ifdef.R.rsp | 54 inst/rsp_tests/incl/include-meta.txt.rsp | 2 inst/rsp_tests/includes-meta.txt.rsp | 14 inst/rsp_tests/includes.txt.rsp | 48 inst/rsp_tests/multi,selfcontained.md.rsp | 116 inst/rsp_tests/nested-if-else.txt.rsp | 34 inst/rsp_tests/recursive.txt.rsp | 14 inst/rsp_tests/strings.txt.rsp | 110 inst/rsp_tests/trimming-1.txt.rsp | 66 inst/rsp_tests/trimming-2.txt.rsp | 30 inst/rsp_tests/trimming-3.txt.rsp | 12 inst/rsp_tests/variables.txt.rsp | 34 inst/rsp_tests_experimental/birth-sh.txt.rsp | 8 man/R.rsp-package.Rd | 2 man/rargs.Rd | 7 man/rfile.Rd | 10 tests/rargs.R | 4 tests/rfile.R | 1 vignettes/Dynamic_document_creation_using_RSP.tex.rsp | 2550 +++++----- vignettes/RSP_refcard.tex.rsp | 596 +- vignettes/R_packages-RSP_vignettes.md.rsp | 142 vignettes/R_packages-Vignettes_prior_to_R300.tex.rsp | 298 - 79 files changed, 6097 insertions(+), 6094 deletions(-)
Title: Techniques for Automated Classifiers
Description: A set of techniques that can be used to develop, validate, and implement automated classifiers. A powerful tool for transforming raw data into meaningful information, 'ncodeR' (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is designed specifically for working with big data: large document collections, logfiles, and other text data.
Author: Cody L Marquart [aut, cre] (<https://orcid.org/0000-0002-3387-6792>),
Zachari Swiecki [aut],
Brendan Eagan [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between ncodeR versions 0.1.3.0 dated 2019-05-03 and 0.2.0.0 dated 2019-10-17
ncodeR-0.1.3.0/ncodeR/R/nCoderR.R |only ncodeR-0.1.3.0/ncodeR/man/print.summary.Test.Rd |only ncodeR-0.1.3.0/ncodeR/man/summary.Test.Rd |only ncodeR-0.2.0.0/ncodeR/DESCRIPTION | 16 - ncodeR-0.2.0.0/ncodeR/MD5 | 61 ++-- ncodeR-0.2.0.0/ncodeR/NAMESPACE | 5 ncodeR-0.2.0.0/ncodeR/R/Code.R | 31 +- ncodeR-0.2.0.0/ncodeR/R/RegexCode.R | 118 +++++---- ncodeR-0.2.0.0/ncodeR/R/Test.R | 231 ++++++++++++++---- ncodeR-0.2.0.0/ncodeR/R/differences.R | 60 ++-- ncodeR-0.2.0.0/ncodeR/R/getHandSetIndices.R | 106 ++++++++ ncodeR-0.2.0.0/ncodeR/R/handcode.R | 147 ++++++----- ncodeR-0.2.0.0/ncodeR/R/ncodeR.R |only ncodeR-0.2.0.0/ncodeR/R/resolve.R | 12 ncodeR-0.2.0.0/ncodeR/R/summary&print.R | 119 ++------- ncodeR-0.2.0.0/ncodeR/README.md |only ncodeR-0.2.0.0/ncodeR/build |only ncodeR-0.2.0.0/ncodeR/data/RS.data.rda |binary ncodeR-0.2.0.0/ncodeR/demo/ncodeR.single.code.R | 12 ncodeR-0.2.0.0/ncodeR/inst/NEWS.Rd | 11 ncodeR-0.2.0.0/ncodeR/inst/_pkgdown.yml |only ncodeR-0.2.0.0/ncodeR/inst/doc |only ncodeR-0.2.0.0/ncodeR/inst/docker/ncodeR-release-test |only ncodeR-0.2.0.0/ncodeR/man/differences.Rd | 6 ncodeR-0.2.0.0/ncodeR/man/expression.match.Rd |only ncodeR-0.2.0.0/ncodeR/man/figures |only ncodeR-0.2.0.0/ncodeR/man/getHandSetIndices2.Rd |only ncodeR-0.2.0.0/ncodeR/man/handcode.Rd | 9 ncodeR-0.2.0.0/ncodeR/man/ncodeR.Rd | 2 ncodeR-0.2.0.0/ncodeR/man/old_test.Rd |only ncodeR-0.2.0.0/ncodeR/man/print.summary.TestList.Rd | 8 ncodeR-0.2.0.0/ncodeR/man/summary.TestList.Rd | 4 ncodeR-0.2.0.0/ncodeR/man/test.Rd | 17 - ncodeR-0.2.0.0/ncodeR/tests/testthat |only ncodeR-0.2.0.0/ncodeR/tests/testthat.R | 8 ncodeR-0.2.0.0/ncodeR/vignettes |only 36 files changed, 639 insertions(+), 344 deletions(-)
Title: IMAP Toolkit
Description: IMAP4rev1 (Internet Message Access Protocol, Version 4rev1)
functionalities based on the RFC 3501 manual (Crispin, 2003,
<doi:10.17487/RFC3501>), its updates, and other related documents.
'mRpostman' makes extensive use of 'curl' and 'libcurl' capabilities,
providing functions for mailboxes and electronic messages manipulation, such
as moving, deleting, and searching messages using specific
criteria, setting and clearing flags, selective fetching of message
attributes and more.
Author: Allan Quadros [aut, cre]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between mRpostman versions 0.2.0 dated 2019-08-22 and 0.3.0 dated 2019-10-17
mRpostman-0.2.0/mRpostman/man/figures/logo_old.png |only mRpostman-0.2.0/mRpostman/man/figures/logo_old2.png |only mRpostman-0.2.0/mRpostman/man/figures/logo_old3.png |only mRpostman-0.3.0/mRpostman/DESCRIPTION | 26 mRpostman-0.3.0/mRpostman/MD5 | 308 ++++---- mRpostman-0.3.0/mRpostman/NAMESPACE | 2 mRpostman-0.3.0/mRpostman/R/AND.R | 4 mRpostman-0.3.0/mRpostman/R/OR.R | 4 mRpostman-0.3.0/mRpostman/R/add-flags.R | 4 mRpostman-0.3.0/mRpostman/R/before.R | 4 mRpostman-0.3.0/mRpostman/R/check-args-custom-search.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-fetch-full-msg.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-get-attachments.R |only mRpostman-0.3.0/mRpostman/R/check-args-search-date.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-search-flag.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-search-period.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-search-size.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-search-string.R | 2 mRpostman-0.3.0/mRpostman/R/check-args-search_within.R | 2 mRpostman-0.3.0/mRpostman/R/config-handle.R | 1 mRpostman-0.3.0/mRpostman/R/configure-imap.R | 8 mRpostman-0.3.0/mRpostman/R/copy-msg.R | 4 mRpostman-0.3.0/mRpostman/R/count-msgs.R | 6 mRpostman-0.3.0/mRpostman/R/custom-search.R | 4 mRpostman-0.3.0/mRpostman/R/delete-msg.R | 4 mRpostman-0.3.0/mRpostman/R/environments-tests.R |only mRpostman-0.3.0/mRpostman/R/examine-mailbox.R | 4 mRpostman-0.3.0/mRpostman/R/expunge.R | 4 mRpostman-0.3.0/mRpostman/R/fetch-full-msg.R | 20 mRpostman-0.3.0/mRpostman/R/fetch-msg-header.R | 24 mRpostman-0.3.0/mRpostman/R/fetch-msg-metadata.R | 12 mRpostman-0.3.0/mRpostman/R/fetch-msg-text.R | 10 mRpostman-0.3.0/mRpostman/R/flag-options.R | 9 mRpostman-0.3.0/mRpostman/R/flag.R | 4 mRpostman-0.3.0/mRpostman/R/get-attachments.R |only mRpostman-0.3.0/mRpostman/R/get-max-id.R | 4 mRpostman-0.3.0/mRpostman/R/get-min-id.R | 4 mRpostman-0.3.0/mRpostman/R/has-attachment.R |only mRpostman-0.3.0/mRpostman/R/larger-than.R | 6 mRpostman-0.3.0/mRpostman/R/list-attachments.R |only mRpostman-0.3.0/mRpostman/R/list-mailboxes.R | 16 mRpostman-0.3.0/mRpostman/R/list-server-capabilities.R | 38 - mRpostman-0.3.0/mRpostman/R/loop-fetch-full-msg.R | 7 mRpostman-0.3.0/mRpostman/R/loop-fetch-msg-header.R | 11 mRpostman-0.3.0/mRpostman/R/loop-fetch-msg-metadata.R | 7 mRpostman-0.3.0/mRpostman/R/loop-fetch-msg-text.R | 7 mRpostman-0.3.0/mRpostman/R/move-msg.R | 4 mRpostman-0.3.0/mRpostman/R/older-than.R | 4 mRpostman-0.3.0/mRpostman/R/on.R | 6 mRpostman-0.3.0/mRpostman/R/remove-flags.R | 4 mRpostman-0.3.0/mRpostman/R/rename-mailbox.R | 6 mRpostman-0.3.0/mRpostman/R/replace-flags.R | 4 mRpostman-0.3.0/mRpostman/R/search-before.R | 4 mRpostman-0.3.0/mRpostman/R/search-flag.R | 4 mRpostman-0.3.0/mRpostman/R/search-larger-than.R | 4 mRpostman-0.3.0/mRpostman/R/search-older-than.R | 4 mRpostman-0.3.0/mRpostman/R/search-on.R | 4 mRpostman-0.3.0/mRpostman/R/search-period.R | 4 mRpostman-0.3.0/mRpostman/R/search-sent-before.R | 4 mRpostman-0.3.0/mRpostman/R/search-sent-on.R | 4 mRpostman-0.3.0/mRpostman/R/search-sent-period.R | 4 mRpostman-0.3.0/mRpostman/R/search-sent-since.R | 4 mRpostman-0.3.0/mRpostman/R/search-since.R | 4 mRpostman-0.3.0/mRpostman/R/search-smaller-than.R | 4 mRpostman-0.3.0/mRpostman/R/search-string.R | 4 mRpostman-0.3.0/mRpostman/R/search-younger-than.R | 4 mRpostman-0.3.0/mRpostman/R/sent-before.R | 4 mRpostman-0.3.0/mRpostman/R/sent-on.R | 4 mRpostman-0.3.0/mRpostman/R/sent-since.R | 4 mRpostman-0.3.0/mRpostman/R/since.R | 4 mRpostman-0.3.0/mRpostman/R/smaller-than.R | 4 mRpostman-0.3.0/mRpostman/R/string.R | 4 mRpostman-0.3.0/mRpostman/R/younger-than.R | 4 mRpostman-0.3.0/mRpostman/README.md | 77 +- mRpostman-0.3.0/mRpostman/build/partial.rdb |binary mRpostman-0.3.0/mRpostman/inst/doc/basics.R | 100 +- mRpostman-0.3.0/mRpostman/inst/doc/basics.Rmd | 233 +++--- mRpostman-0.3.0/mRpostman/inst/doc/basics.html | 367 ++++------ mRpostman-0.3.0/mRpostman/man/AND.Rd | 4 mRpostman-0.3.0/mRpostman/man/OR.Rd | 4 mRpostman-0.3.0/mRpostman/man/add_flags.Rd | 4 mRpostman-0.3.0/mRpostman/man/before.Rd | 4 mRpostman-0.3.0/mRpostman/man/check_args_add_replace_flags.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_copy_msg.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_custom_search.Rd | 3 mRpostman-0.3.0/mRpostman/man/check_args_delete_msg.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_expunge.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_fetch_full_msg.Rd | 3 mRpostman-0.3.0/mRpostman/man/check_args_fetch_msg_header.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_fetch_msg_metadata.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_fetch_msg_text.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_get_attachments.Rd |only mRpostman-0.3.0/mRpostman/man/check_args_get_max_min_id.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_move_msg.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_remove_flags.Rd | 1 mRpostman-0.3.0/mRpostman/man/check_args_search_date.Rd | 3 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| 2 mRpostman-0.3.0/mRpostman/man/delete_msg.Rd | 4 mRpostman-0.3.0/mRpostman/man/examine_mailbox.Rd | 4 mRpostman-0.3.0/mRpostman/man/expunge.Rd | 4 mRpostman-0.3.0/mRpostman/man/fetch_full_msg.Rd | 6 mRpostman-0.3.0/mRpostman/man/fetch_msg_header.Rd | 4 mRpostman-0.3.0/mRpostman/man/fetch_msg_metadata.Rd | 4 mRpostman-0.3.0/mRpostman/man/fetch_msg_text.Rd | 4 mRpostman-0.3.0/mRpostman/man/figures/logo.png |binary mRpostman-0.3.0/mRpostman/man/flag.Rd | 4 mRpostman-0.3.0/mRpostman/man/flag_options.Rd | 9 mRpostman-0.3.0/mRpostman/man/get_attachments.Rd |only mRpostman-0.3.0/mRpostman/man/get_max_id.Rd | 4 mRpostman-0.3.0/mRpostman/man/get_min_id.Rd | 4 mRpostman-0.3.0/mRpostman/man/has_attachment.Rd |only mRpostman-0.3.0/mRpostman/man/larger_than.Rd | 6 mRpostman-0.3.0/mRpostman/man/list_attachments.Rd |only mRpostman-0.3.0/mRpostman/man/list_mailboxes.Rd | 6 mRpostman-0.3.0/mRpostman/man/list_server_capabilities.Rd | 6 mRpostman-0.3.0/mRpostman/man/loop_fetch_full_msg.Rd | 2 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mRpostman-0.3.0/mRpostman/man/search_younger_than.Rd | 6 mRpostman-0.3.0/mRpostman/man/sent_before.Rd | 4 mRpostman-0.3.0/mRpostman/man/sent_on.Rd | 4 mRpostman-0.3.0/mRpostman/man/sent_since.Rd | 4 mRpostman-0.3.0/mRpostman/man/since.Rd | 4 mRpostman-0.3.0/mRpostman/man/smaller_than.Rd | 4 mRpostman-0.3.0/mRpostman/man/string.Rd | 4 mRpostman-0.3.0/mRpostman/man/younger_than.Rd | 4 mRpostman-0.3.0/mRpostman/vignettes/basics.Rmd | 233 +++--- mRpostman-0.3.0/mRpostman/vignettes/figures/INBOX.png |only mRpostman-0.3.0/mRpostman/vignettes/figures/INBOX2.png |only 162 files changed, 1067 insertions(+), 943 deletions(-)
Title: Litter Analysis
Description: Data sets on various litter types like beach litter, riverain
litter, floating litter, and seafloor litter are rapidly growing. This
package offers a simple user interface to analyse these litter data in
a consistent and reproducible way. It also provides functions to
facilitate several kinds of litter analysis, e.g., trend analysis,
power analysis, and baseline analysis. Under the hood, these functions
are also used by the user interface. See Schulz et al. (2019)
<doi:10.1016/j.envpol.2019.02.030> for details. MS-Windows users are
advised to run 'litteR' in 'RStudio'. See our vignette: Installation manual
for 'RStudio' and 'litteR'.
Author: Dennis Walvoort [aut, cre, cph],
Willem van Loon [aut, cph],
Rijkswaterstaat - The Netherlands [cph, fnd, dtc]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between litteR versions 0.6.2 dated 2019-10-07 and 0.6.4 dated 2019-10-17
DESCRIPTION | 12 +++++++----- MD5 | 23 +++++++++++++++-------- NEWS.md | 10 ++++++++++ README.md | 16 +++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/litter-installation.R |only inst/doc/litter-installation.Rmd |only inst/doc/litter-installation.html |only inst/doc/litter-manual.Rmd | 8 ++++---- inst/doc/litter-manual.html | 12 ++++++------ vignettes/fig/rstudio-pkg-man-cran.png |only vignettes/fig/rstudio-pkg-man-install.png |only vignettes/fig/rstudio-pkg-man-update.png |only vignettes/litter-installation.Rmd |only vignettes/litter-manual.Rmd | 8 ++++---- 16 files changed, 61 insertions(+), 28 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.2.3 dated 2019-09-23 and 0.2.4 dated 2019-10-17
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 5 +++++ NEWS.md | 7 +++++++ R/geom_image.R | 32 ++++++++++++++++++++++++++++---- R/geom_phylopic.R | 14 ++++++++++---- inst/doc/ggimage.html | 24 ++++++++++++------------ man/geom_image.Rd | 2 +- man/geom_phylopic.Rd | 2 +- 9 files changed, 76 insertions(+), 34 deletions(-)
Title: Methods for Estimating Optimal Dynamic Treatment Regimes
Description: Methods to estimate dynamic treatment regimes using Interactive Q-Learning, Q-Learning, weighted learning, and value-search methods based on Augmented Inverse Probability Weighted Estimators and Inverse Probability Weighted Estimators.
Author: S. T. Holloway, E. B. Laber, K. A. Linn, B. Zhang, M. Davidian, and A. A. Tsiatis
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between DynTxRegime versions 4.1 dated 2019-03-21 and 4.2 dated 2019-10-17
DESCRIPTION | 8 +++---- MD5 | 48 +++++++++++++++++++++++---------------------- NEWS |only R/B_TxInfoInteger.R | 3 -- R/B_TxObj.R | 1 R/B_TxSubset.R | 5 ++-- R/B_TxSubsetInteger.R | 4 ++- R/C_TypedFitObj.R | 2 - R/D_OutcomeObj.R | 2 - R/F_PropensityFit.R | 6 ----- R/F_PropensityFit_fSet.R | 1 R/F_PropensityObj.R | 13 +++++------- R/J_class_OptimalClass.R | 4 +-- R/J_optimalClass.R | 1 R/M_OptimKernel.R | 5 ++++ R/O_Learning.R | 1 R/O_LearningMulti.R | 1 R/P_class_.owl.R | 8 +++---- R/P_owl.R | 2 - R/R_bowl.R | 2 - R/R_class_BOWL.R | 8 +++++++ R/R_class_BOWLBasic.R | 4 --- R/checkInputs.R | 13 +++++++++--- man/PropensityObj-class.Rd | 4 +-- man/dot-optimalClass.Rd |only man/optimalClass.Rd | 41 +++++--------------------------------- 26 files changed, 88 insertions(+), 99 deletions(-)
Title: Evaluation of Model-Data Fit in Item Response Theory (IRT) and
Useful Functions Related to IRT
Description: Examine the IRT model-data fit on item-level
in different ways as well as provide useful functions related to unidimensional
item response theory (IRT). In terms of assessing the IRT model-data fit, one of
distinguished features of this package is that it gives not only well-known item
fit statistics (e.g., chi-square (X2), likelihood ratio chi-square (G2), infit and oufit statistics
(Ames & Penfield (2015) <doi:10.1111/emip.12067>)) but also graphical
displays to look at residuals between between the observed data and model-based
predictions (Hambleton, Swaminathan, & Rogers (1991, ISBN:9780803936478)).
More evaluation methods will be included in the future updated version.
In addition to the evaluation of IRT model-data fit, there are several
useful functions such as estimating proficiency parameters, calibrating item parameters
given the fixed effects (aka. ability values) (Baker & Kim (2004, ISBN:9780824758257)),
computing asymptotic variance-covariance matrices of item parameter estimates
(Li & Lissitz (2004) <doi:10.1111/j.1745-3984.2004.tb01109.x>), importing item and/or
ability parameters from popular IRT software, generating simulated data, computing
the conditional distribution of observed scores using the Lord-Wingersky recursion
formula (Lord & Wingersky (1984) <doi:10.1207/s15324818ame1002_1>),
computing the loglikelihood of individual items, computing item and test
information functions, computing item and test characteristic curve functions,
and plotting item and test characteristic curves and item and test information functions.
Author: Hwanggyu Lim [aut, cre],
Craig S. Wells [ctb]
Maintainer: Hwanggyu Lim <hglim83@gmail.com>
Diff between irtplay versions 1.1.0 dated 2019-09-18 and 1.2.0 dated 2019-10-17
DESCRIPTION | 12 +-- MD5 | 35 ++++----- NAMESPACE | 1 NEWS.md | 18 ++++ R/est_item.R | 13 ++- R/est_score.R | 153 +++++++++++++++++++++++++++++++++------- R/gradient.R | 3 R/hessian.R | 7 - R/inv_tcc.R |only R/irtfit.R | 10 ++ R/irtplay-package.R | 20 ++++- R/loglike_item.R | 187 +++++++++++++++++++++++++++++++++++++++++++++++++ R/loglike_score.R | 7 + R/se_tcc.R |only R/util.R | 8 ++ R/write_flexmirt.R | 3 man/est_score.Rd | 104 ++++++++++++++++++++++----- man/irtfit.Rd | 10 ++ man/irtplay-package.Rd | 20 ++++- man/llike_item.Rd |only 20 files changed, 526 insertions(+), 85 deletions(-)
Title: Accessing the 'CHILDES' Database
Description: Tools for connecting to 'CHILDES', an open repository for
transcripts of parent-child interaction. For more information on the
underlying data, see <http://childes-db.stanford.edu>.
Author: Mika Braginsky [aut, cre],
Alessandro Sanchez [aut, ctb],
Daniel Yurovsky [aut],
Kyle MacDonald [ctb],
Stephan Meylan [ctb]
Maintainer: Mika Braginsky <mika.br@gmail.com>
Diff between childesr versions 0.1.1 dated 2019-04-25 and 0.1.2 dated 2019-10-17
DESCRIPTION | 6 - MD5 | 21 +++--- NAMESPACE | 3 NEWS.md | 4 - R/childesr.R | 67 +++++++++++++++++---- build/vignette.rds |binary inst/doc/access_childes_db.R | 4 + inst/doc/access_childes_db.Rmd | 31 +++++----- inst/doc/access_childes_db.html | 123 ++++++++++++++++++---------------------- man/check_connection.Rd |only man/clear_connections.Rd |only man/get_db_info.Rd |only vignettes/access_childes_db.Rmd | 31 +++++----- 13 files changed, 173 insertions(+), 117 deletions(-)