Tue, 05 Nov 2019

Package testthat updated to version 2.3.0 with previous version 2.2.1 dated 2019-07-25

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 2.2.1 dated 2019-07-25 and 2.3.0 dated 2019-11-05

 testthat-2.2.1/testthat/R/traceback.R                                    |only
 testthat-2.2.1/testthat/man/output-expectations.Rd                       |only
 testthat-2.2.1/testthat/tests/testthat/test-expect-error.R               |only
 testthat-2.2.1/testthat/tests/testthat/test-expect-error.txt             |only
 testthat-2.2.1/testthat/tests/testthat/test-expect-message.R             |only
 testthat-2.2.1/testthat/tests/testthat/test-expect-warning.R             |only
 testthat-2.2.1/testthat/tests/testthat/test-expect-warning.txt           |only
 testthat-2.2.1/testthat/tests/testthat/test_dir.rds                      |only
 testthat-2.3.0/testthat/DESCRIPTION                                      |   42 -
 testthat-2.3.0/testthat/MD5                                              |  179 +++--
 testthat-2.3.0/testthat/NAMESPACE                                        |    6 
 testthat-2.3.0/testthat/NEWS.md                                          |   78 ++
 testthat-2.3.0/testthat/R/capture-condition.R                            |   54 +
 testthat-2.3.0/testthat/R/compare-numeric.R                              |   17 
 testthat-2.3.0/testthat/R/compare.R                                      |    2 
 testthat-2.3.0/testthat/R/evaluate-promise.R                             |    4 
 testthat-2.3.0/testthat/R/expect-condition.R                             |only
 testthat-2.3.0/testthat/R/expect-invisible.R                             |    4 
 testthat-2.3.0/testthat/R/expect-known.R                                 |    1 
 testthat-2.3.0/testthat/R/expect-messages.R                              |only
 testthat-2.3.0/testthat/R/expect-output.R                                |  310 ----------
 testthat-2.3.0/testthat/R/expect-silent.R                                |only
 testthat-2.3.0/testthat/R/expectation.R                                  |  117 +++
 testthat-2.3.0/testthat/R/quasi-label.R                                  |   22 
 testthat-2.3.0/testthat/R/recover.R                                      |   13 
 testthat-2.3.0/testthat/R/reporter-debug.R                               |    2 
 testthat-2.3.0/testthat/R/reporter-junit.R                               |    4 
 testthat-2.3.0/testthat/R/reporter-list.R                                |   49 +
 testthat-2.3.0/testthat/R/reporter-stop.R                                |   14 
 testthat-2.3.0/testthat/R/reporter-zzz.R                                 |    5 
 testthat-2.3.0/testthat/R/reporter.R                                     |    1 
 testthat-2.3.0/testthat/R/skip.R                                         |   14 
 testthat-2.3.0/testthat/R/test-compiled-code.R                           |   16 
 testthat-2.3.0/testthat/R/test-directory.R                               |   21 
 testthat-2.3.0/testthat/R/test-files.R                                   |    5 
 testthat-2.3.0/testthat/R/test-that.R                                    |   80 +-
 testthat-2.3.0/testthat/R/try-again.R                                    |    2 
 testthat-2.3.0/testthat/R/utils.R                                        |   33 +
 testthat-2.3.0/testthat/R/verify-output.R                                |  161 +++--
 testthat-2.3.0/testthat/README.md                                        |    4 
 testthat-2.3.0/testthat/inst/doc/custom-expectation.R                    |    4 
 testthat-2.3.0/testthat/inst/doc/custom-expectation.Rmd                  |    4 
 testthat-2.3.0/testthat/inst/doc/custom-expectation.html                 |    4 
 testthat-2.3.0/testthat/man/Reporter.Rd                                  |    1 
 testthat-2.3.0/testthat/man/capture_condition.Rd                         |   13 
 testthat-2.3.0/testthat/man/compare.Rd                                   |   10 
 testthat-2.3.0/testthat/man/comparison-expectations.Rd                   |    7 
 testthat-2.3.0/testthat/man/equality-expectations.Rd                     |    7 
 testthat-2.3.0/testthat/man/expect.Rd                                    |   24 
 testthat-2.3.0/testthat/man/expect_cpp_tests_pass.Rd                     |   15 
 testthat-2.3.0/testthat/man/expect_error.Rd                              |only
 testthat-2.3.0/testthat/man/expect_known_output.Rd                       |    1 
 testthat-2.3.0/testthat/man/expect_length.Rd                             |    9 
 testthat-2.3.0/testthat/man/expect_match.Rd                              |    9 
 testthat-2.3.0/testthat/man/expect_message.Rd                            |only
 testthat-2.3.0/testthat/man/expect_named.Rd                              |    9 
 testthat-2.3.0/testthat/man/expect_null.Rd                               |    9 
 testthat-2.3.0/testthat/man/expect_output.Rd                             |only
 testthat-2.3.0/testthat/man/expect_silent.Rd                             |only
 testthat-2.3.0/testthat/man/expectation.Rd                               |   23 
 testthat-2.3.0/testthat/man/inheritance-expectations.Rd                  |    7 
 testthat-2.3.0/testthat/man/is_informative_error.Rd                      |only
 testthat-2.3.0/testthat/man/logical-expectations.Rd                      |    7 
 testthat-2.3.0/testthat/man/quasi_label.Rd                               |    4 
 testthat-2.3.0/testthat/man/skip.Rd                                      |    2 
 testthat-2.3.0/testthat/man/test_dir.Rd                                  |    7 
 testthat-2.3.0/testthat/man/test_file.Rd                                 |    4 
 testthat-2.3.0/testthat/man/verify_output.Rd                             |   92 ++
 testthat-2.3.0/testthat/tests/testthat.R                                 |   13 
 testthat-2.3.0/testthat/tests/testthat/helper-reporter.R                 |    4 
 testthat-2.3.0/testthat/tests/testthat/reporters/backtraces.R            |only
 testthat-2.3.0/testthat/tests/testthat/reporters/check.txt               |   52 -
 testthat-2.3.0/testthat/tests/testthat/reporters/debug.txt               |  109 +--
 testthat-2.3.0/testthat/tests/testthat/reporters/fail.R                  |only
 testthat-2.3.0/testthat/tests/testthat/reporters/junit.txt               |   54 -
 testthat-2.3.0/testthat/tests/testthat/reporters/progress-backtraces.txt |only
 testthat-2.3.0/testthat/tests/testthat/reporters/progress.txt            |   52 -
 testthat-2.3.0/testthat/tests/testthat/reporters/stop.txt                |only
 testthat-2.3.0/testthat/tests/testthat/reporters/summary-no-dots.txt     |   52 -
 testthat-2.3.0/testthat/tests/testthat/reporters/summary.txt             |   52 -
 testthat-2.3.0/testthat/tests/testthat/reporters/tap.txt                 |   52 -
 testthat-2.3.0/testthat/tests/testthat/reporters/teamcity.txt            |    6 
 testthat-2.3.0/testthat/tests/testthat/test-expect-condition-custom.txt  |only
 testthat-2.3.0/testthat/tests/testthat/test-expect-condition.R           |only
 testthat-2.3.0/testthat/tests/testthat/test-expect-condition.txt         |only
 testthat-2.3.0/testthat/tests/testthat/test-expect-messages-warning.txt  |only
 testthat-2.3.0/testthat/tests/testthat/test-expect-messages.R            |only
 testthat-2.3.0/testthat/tests/testthat/test-expect-output.R              |    8 
 testthat-2.3.0/testthat/tests/testthat/test-expectation.R                |   14 
 testthat-2.3.0/testthat/tests/testthat/test-list-reporter                |only
 testthat-2.3.0/testthat/tests/testthat/test-quasi-label.R                |only
 testthat-2.3.0/testthat/tests/testthat/test-reporter-list.R              |  103 ++-
 testthat-2.3.0/testthat/tests/testthat/test-reporter.R                   |   18 
 testthat-2.3.0/testthat/tests/testthat/test-test-that.R                  |    7 
 testthat-2.3.0/testthat/tests/testthat/test-test_dir.R                   |    2 
 testthat-2.3.0/testthat/tests/testthat/test-test_dir.txt                 |only
 testthat-2.3.0/testthat/tests/testthat/test-verify-conditions-lines.txt  |only
 testthat-2.3.0/testthat/tests/testthat/test-verify-conditions.txt        |   15 
 testthat-2.3.0/testthat/tests/testthat/test-verify-constructed-calls.txt |only
 testthat-2.3.0/testthat/tests/testthat/test-verify-output.R              |   53 +
 testthat-2.3.0/testthat/tests/testthat/test-verify-output.txt            |    9 
 testthat-2.3.0/testthat/tests/testthat/test-verify-unicode-false.txt     |only
 testthat-2.3.0/testthat/tests/testthat/test-verify-unicode-true.txt      |only
 testthat-2.3.0/testthat/tests/testthat/test-watcher.R                    |    1 
 testthat-2.3.0/testthat/vignettes/custom-expectation.Rmd                 |    4 
 105 files changed, 1319 insertions(+), 893 deletions(-)

More information about testthat at CRAN
Permanent link

Package stratamatch updated to version 0.1.1 with previous version 0.1.0 dated 2019-10-24

Title: Stratification and Matching for Large Observational Data Sets
Description: A pilot matching design to automatically stratify and match large datasets. The manual_stratify() function allows users to manually stratify a dataset based on categorical variables of interest, while the auto_stratify() function does automatically by allocating a held-aside (pilot) data set, fitting a prognostic score (see Hansen (2008) <doi:10.1093/biomet/asn004>) on the pilot set, and stratifying the data set based on prognostic score quantiles. The strata_match() function then does optimal matching of the data set in parallel within strata.
Author: Rachael C. Aikens [aut, cre], Joseph Rigdon [aut], Justin Lee [aut], Michael Baiocchi [aut], Jonathan Chen [aut]
Maintainer: Rachael C. Aikens <rockyaikens@gmail.com>

Diff between stratamatch versions 0.1.0 dated 2019-10-24 and 0.1.1 dated 2019-11-05

 DESCRIPTION                           |    6 ++---
 MD5                                   |   16 +++++++--------
 R/S3_methods.R                        |    3 --
 R/auto_stratify.R                     |   21 ++++++++++---------
 README.md                             |   36 +++++++++++++++++++++++++++-------
 inst/doc/Intro_to_stratamatch.html    |    4 +--
 tests/testthat/test-S3_functions.R    |    3 --
 tests/testthat/test-auto_stratify.R   |   22 +++++++++++---------
 tests/testthat/test-match_functions.R |    2 -
 9 files changed, 65 insertions(+), 48 deletions(-)

More information about stratamatch at CRAN
Permanent link

Package scs updated to version 1.3-1 with previous version 1.2-3 dated 2019-03-06

Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve: linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs ('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<http://www.suitesparse.com>).
Author: Florian Schwendinger [ctb, cre], Brendan O'Donoghue [aut, cph], Balasubramanian Narasimhan [ctb], Timothy A. Davis [cph], Patrick R. Amestory [cph], Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

Diff between scs versions 1.2-3 dated 2019-03-06 and 1.3-1 dated 2019-11-05

 scs-1.2-3/scs/src/scs/include/accel.h                             |only
 scs-1.2-3/scs/src/scs/include/cs.h                                |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/AMD_README.txt       |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/LDL_README.txt       |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/SuiteSparse_config.c |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/SuiteSparse_config.h |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd.h                |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_1.c              |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_2.c              |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_aat.c            |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_control.c        |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_defaults.c       |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_dump.c           |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_global.c         |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_info.c           |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_internal.h       |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_order.c          |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_post_tree.c      |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_postorder.c      |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_preprocess.c     |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/amd_valid.c          |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/ldl.c                |only
 scs-1.2-3/scs/src/scs/linsys/direct/external/ldl.h                |only
 scs-1.2-3/scs/src/scs/src/accel.c                                 |only
 scs-1.2-3/scs/src/scs/src/cs.c                                    |only
 scs-1.2-3/scs/src/scs_init.c                                      |only
 scs-1.2-3/scs/tests/test.R                                        |only
 scs-1.3-1/scs/DESCRIPTION                                         |   23 
 scs-1.3-1/scs/MD5                                                 |  121 +-
 scs-1.3-1/scs/NAMESPACE                                           |    7 
 scs-1.3-1/scs/R/scs.R                                             |   48 
 scs-1.3-1/scs/README.md                                           |   22 
 scs-1.3-1/scs/cleanup                                             |    5 
 scs-1.3-1/scs/man/scs.Rd                                          |   22 
 scs-1.3-1/scs/man/scs_control.Rd                                  |    4 
 scs-1.3-1/scs/src/Makevars                                        |   26 
 scs-1.3-1/scs/src/Makevars.win                                    |only
 scs-1.3-1/scs/src/init.c                                          |only
 scs-1.3-1/scs/src/scs/Makefile                                    |only
 scs-1.3-1/scs/src/scs/include/aa.h                                |only
 scs-1.3-1/scs/src/scs/include/ctrlc.h                             |   19 
 scs-1.3-1/scs/src/scs/include/glbopts.h                           |   16 
 scs-1.3-1/scs/src/scs/include/rw.h                                |only
 scs-1.3-1/scs/src/scs/include/scs.h                               |   10 
 scs-1.3-1/scs/src/scs/include/util.h                              |    2 
 scs-1.3-1/scs/src/scs/linsys/common.c                             |  112 +
 scs-1.3-1/scs/src/scs/linsys/common.h                             |    5 
 scs-1.3-1/scs/src/scs/linsys/direct/external/amd                  |only
 scs-1.3-1/scs/src/scs/linsys/direct/external/qdldl                |only
 scs-1.3-1/scs/src/scs/linsys/direct/private.c                     |  283 +++-
 scs-1.3-1/scs/src/scs/linsys/direct/private.h                     |   17 
 scs-1.3-1/scs/src/scs/scs.mk                                      |only
 scs-1.3-1/scs/src/scs/src/aa.c                                    |only
 scs-1.3-1/scs/src/scs/src/cones.c                                 |   13 
 scs-1.3-1/scs/src/scs/src/ctrlc.c                                 |   13 
 scs-1.3-1/scs/src/scs/src/normalize.c                             |    3 
 scs-1.3-1/scs/src/scs/src/rw.c                                    |only
 scs-1.3-1/scs/src/scs/src/scs.c                                   |   73 -
 scs-1.3-1/scs/src/scs/src/util.c                                  |    4 
 scs-1.3-1/scs/src/scs/test/data                                   |only
 scs-1.3-1/scs/src/scs/test/problems/small_lp.h                    |    3 
 scs-1.3-1/scs/src/scs/test/problems/small_random_socp.h           |only
 scs-1.3-1/scs/src/scs/test/random_socp_prob.c                     |    2 
 scs-1.3-1/scs/src/scs/test/run_from_file.c                        |only
 scs-1.3-1/scs/src/scs/test/run_tests.c                            |   10 
 scs-1.3-1/scs/src/scs_mods                                        |only
 scs-1.3-1/scs/src/scsr.c                                          |  595 +++-------
 scs-1.3-1/scs/tests/testthat                                      |only
 scs-1.3-1/scs/tests/testthat.R                                    |only
 69 files changed, 770 insertions(+), 688 deletions(-)

More information about scs at CRAN
Permanent link

Package rstpm2 updated to version 1.5.1 with previous version 1.5.0 dated 2019-10-15

Title: Smooth Survival Models, Including Generalized Survival Models
Description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.
Author: Mark Clements [aut, cre], Xing-Rong Liu [aut], Paul Lambert [ctb], Lasse Hjort Jakobsen [ctb], Alessandro Gasparini [ctb], Gordon Smyth [cph], Patrick Alken [cph], Simon Wood [cph], Rhys Ulerich [cph]
Maintainer: Mark Clements <mark.clements@ki.se>

Diff between rstpm2 versions 1.5.0 dated 2019-10-15 and 1.5.1 dated 2019-11-05

 rstpm2-1.5.0/rstpm2/vignettes/Introduction-012.pdf |only
 rstpm2-1.5.0/rstpm2/vignettes/Introduction-013.pdf |only
 rstpm2-1.5.0/rstpm2/vignettes/SimpleGuide-003.pdf  |only
 rstpm2-1.5.0/rstpm2/vignettes/SimpleGuide-008.pdf  |only
 rstpm2-1.5.0/rstpm2/vignettes/SimpleGuide-009.pdf  |only
 rstpm2-1.5.0/rstpm2/vignettes/SimpleGuide-014.pdf  |only
 rstpm2-1.5.0/rstpm2/vignettes/SimpleGuide-015.pdf  |only
 rstpm2-1.5.0/rstpm2/vignettes/predictnl-003.pdf    |only
 rstpm2-1.5.0/rstpm2/vignettes/predictnl-004.pdf    |only
 rstpm2-1.5.0/rstpm2/vignettes/predictnl-005.pdf    |only
 rstpm2-1.5.0/rstpm2/vignettes/predictnl-006.pdf    |only
 rstpm2-1.5.1/rstpm2/DESCRIPTION                    |    8 ++--
 rstpm2-1.5.1/rstpm2/MD5                            |   35 +++++++--------------
 rstpm2-1.5.1/rstpm2/NAMESPACE                      |    2 -
 rstpm2-1.5.1/rstpm2/NEWS.md                        |    5 ++-
 rstpm2-1.5.1/rstpm2/R/pm2-3.R                      |   33 +++++++++++++++----
 rstpm2-1.5.1/rstpm2/inst/doc/Introduction.Rnw      |    2 -
 rstpm2-1.5.1/rstpm2/inst/doc/Introduction.pdf      |binary
 rstpm2-1.5.1/rstpm2/inst/doc/SimpleGuide.pdf       |binary
 rstpm2-1.5.1/rstpm2/inst/doc/multistate.pdf        |binary
 rstpm2-1.5.1/rstpm2/inst/doc/predictnl.pdf         |binary
 rstpm2-1.5.1/rstpm2/man/vuniroot.Rd                |    8 ++--
 rstpm2-1.5.1/rstpm2/src/vuniroot.cpp               |    8 ++--
 rstpm2-1.5.1/rstpm2/vignettes/Introduction.Rnw     |    2 -
 24 files changed, 57 insertions(+), 46 deletions(-)

More information about rstpm2 at CRAN
Permanent link

Package GMCM updated to version 1.4 with previous version 1.3.2 dated 2019-03-12

Title: Fast Estimation of Gaussian Mixture Copula Models
Description: Unsupervised Clustering and Meta-analysis using Gaussian Mixture Copula Models.
Author: Anders Ellern Bilgrau [aut, cre, cph] (<https://orcid.org/0000-0001-9875-2902>), Poul Svante Eriksen [ths, ctb] (<https://orcid.org/0000-0001-9192-1814>), Martin Boegsted [ths, ctb]
Maintainer: Anders Ellern Bilgrau <anders.ellern.bilgrau@gmail.com>

Diff between GMCM versions 1.3.2 dated 2019-03-12 and 1.4 dated 2019-11-05

 GMCM-1.3.2/GMCM/inst/NEWS.Rd                                         |only
 GMCM-1.3.2/GMCM/vignettes/saved.RData                                |only
 GMCM-1.4/GMCM/DESCRIPTION                                            |   29 +-
 GMCM-1.4/GMCM/MD5                                                    |  124 ++++++----
 GMCM-1.4/GMCM/NAMESPACE                                              |    6 
 GMCM-1.4/GMCM/NEWS.md                                                |only
 GMCM-1.4/GMCM/R/GMCM-package.R                                       |    4 
 GMCM-1.4/GMCM/R/as.theta.R                                           |   29 ++
 GMCM-1.4/GMCM/R/choose.theta.R                                       |    2 
 GMCM-1.4/GMCM/R/classify.R                                           |only
 GMCM-1.4/GMCM/R/cput.R                                               |only
 GMCM-1.4/GMCM/R/fit.full.GMCM.R                                      |   16 -
 GMCM-1.4/GMCM/R/fit.meta.GMCM.R                                      |   12 
 GMCM-1.4/GMCM/R/get.idr.R                                            |   17 -
 GMCM-1.4/GMCM/R/goodness.of.fit.R                                    |only
 GMCM-1.4/GMCM/R/is.theta.R                                           |    2 
 GMCM-1.4/GMCM/R/runGMCM.R                                            |only
 GMCM-1.4/GMCM/R/run_full_report.R                                    |only
 GMCM-1.4/GMCM/R/run_meta_report.R                                    |only
 GMCM-1.4/GMCM/README.md                                              |   73 -----
 GMCM-1.4/GMCM/build/vignette.rds                                     |binary
 GMCM-1.4/GMCM/data/freshVsFrozen.RData                               |binary
 GMCM-1.4/GMCM/data/u133VsExon.RData                                  |binary
 GMCM-1.4/GMCM/inst/CITATION                                          |    6 
 GMCM-1.4/GMCM/inst/doc/GMCM-JStatSoft.R                              |   36 +-
 GMCM-1.4/GMCM/inst/doc/GMCM-JStatSoft.Rnw                            |    6 
 GMCM-1.4/GMCM/inst/doc/GMCM-JStatSoft.pdf                            |binary
 GMCM-1.4/GMCM/inst/doc/usage-example-general-model.R                 |only
 GMCM-1.4/GMCM/inst/doc/usage-example-general-model.Rmd               |only
 GMCM-1.4/GMCM/inst/doc/usage-example-general-model.html              |only
 GMCM-1.4/GMCM/inst/doc/usage-example-special-model.R                 |only
 GMCM-1.4/GMCM/inst/doc/usage-example-special-model.Rmd               |only
 GMCM-1.4/GMCM/inst/doc/usage-example-special-model.html              |only
 GMCM-1.4/GMCM/inst/doc/usage-shiny-graphical-interface.R             |only
 GMCM-1.4/GMCM/inst/doc/usage-shiny-graphical-interface.Rmd           |only
 GMCM-1.4/GMCM/inst/doc/usage-shiny-graphical-interface.html          |only
 GMCM-1.4/GMCM/inst/shiny                                             |only
 GMCM-1.4/GMCM/man/as.theta.Rd                                        |    2 
 GMCM-1.4/GMCM/man/choose.theta.Rd                                    |    2 
 GMCM-1.4/GMCM/man/classify.Rd                                        |only
 GMCM-1.4/GMCM/man/fit.full.GMCM.Rd                                   |   16 -
 GMCM-1.4/GMCM/man/fit.meta.GMCM.Rd                                   |   12 
 GMCM-1.4/GMCM/man/freshVsFrozen.Rd                                   |    1 
 GMCM-1.4/GMCM/man/get.IDR.Rd                                         |   14 -
 GMCM-1.4/GMCM/man/goodness.of.fit.Rd                                 |only
 GMCM-1.4/GMCM/man/runGMCM.Rd                                         |only
 GMCM-1.4/GMCM/man/u133VsExon.Rd                                      |    1 
 GMCM-1.4/GMCM/src/GMCM.cpp                                           |    5 
 GMCM-1.4/GMCM/tests/testthat/test-EMAlgorithm.R                      |    8 
 GMCM-1.4/GMCM/tests/testthat/test-EStep.R                            |    4 
 GMCM-1.4/GMCM/tests/testthat/test-MStep.R                            |    2 
 GMCM-1.4/GMCM/tests/testthat/test-PseudoEMAlgorithm.R                |    8 
 GMCM-1.4/GMCM/tests/testthat/test-SimulateGMCMData-SimulateGMMData.R |   24 -
 GMCM-1.4/GMCM/tests/testthat/test-as.theta.R                         |   50 +++-
 GMCM-1.4/GMCM/tests/testthat/test-choose.theta.R                     |    2 
 GMCM-1.4/GMCM/tests/testthat/test-classify.R                         |only
 GMCM-1.4/GMCM/tests/testthat/test-full2meta-meta2full.R              |    4 
 GMCM-1.4/GMCM/tests/testthat/test-get.idr-get.prob-get.IDR2.R        |   16 -
 GMCM-1.4/GMCM/tests/testthat/test-goodness.of.fit.R                  |only
 GMCM-1.4/GMCM/tests/testthat/test-is.theta-rtheta.R                  |   16 +
 GMCM-1.4/GMCM/tests/testthat/test-logit-inv.logit.R                  |    4 
 GMCM-1.4/GMCM/tests/testthat/test-meta.gmcm.loglik.R                 |    2 
 GMCM-1.4/GMCM/tests/testthat/test-pgmm.marginal.R                    |    2 
 GMCM-1.4/GMCM/tests/testthat/test-plot.theta.R                       |   17 +
 GMCM-1.4/GMCM/tests/testthat/test-rho.transform-inv.rho.transform.R  |    4 
 GMCM-1.4/GMCM/tests/testthat/test-shiny-reports.R                    |only
 GMCM-1.4/GMCM/tests/testthat/test-tt-inv.tt.R                        |    4 
 GMCM-1.4/GMCM/vignettes/GMCM-JStatSoft.Rnw                           |    6 
 GMCM-1.4/GMCM/vignettes/GMCM-Standalone.R                            |   34 +-
 GMCM-1.4/GMCM/vignettes/cache.RData                                  |only
 GMCM-1.4/GMCM/vignettes/usage-example-general-model.Rmd              |only
 GMCM-1.4/GMCM/vignettes/usage-example-special-model.Rmd              |only
 GMCM-1.4/GMCM/vignettes/usage-shiny-graphical-interface.Rmd          |only
 73 files changed, 362 insertions(+), 260 deletions(-)

More information about GMCM at CRAN
Permanent link

Package arrow updated to version 0.15.1.1 with previous version 0.15.1 dated 2019-11-04

Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. This package provides an interface to the 'Arrow C++' library.
Author: Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Jeroen Ooms [aut], Neal Richardson [aut, cre], Javier Luraschi [ctb], Jeffrey Wong [ctb], Apache Arrow [aut, cph]
Maintainer: Neal Richardson <neal@ursalabs.org>

Diff between arrow versions 0.15.1 dated 2019-11-04 and 0.15.1.1 dated 2019-11-05

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 configure   |   14 +++++++-------
 3 files changed, 12 insertions(+), 12 deletions(-)

More information about arrow at CRAN
Permanent link

Package chillR updated to version 0.70.21 with previous version 0.70.17 dated 2019-05-26

Title: Statistical Methods for Phenology Analysis in Temperate Fruit Trees
Description: The phenology of plants (i.e. the timing of their annual life phases) depends on climatic cues. For temperate trees and many other plants, spring phases, such as leaf emergence and flowering, have been found to result from the effects of both cool (chilling) conditions and heat. Fruit tree scientists (pomologists) have developed some metrics to quantify chilling and heat (e.g. see Luedeling (2012) <doi.org/10.1016/j.scienta.2012.07.011>). 'chillR' contains functions for processing temperature records into chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units (Growing Degree Hours). Regarding chilling metrics, Chill Portions are often considered the most promising, but they are difficult to calculate. This package makes it easy. 'chillR' also contains procedures for conducting a PLS analysis relating phenological dates (e.g. bloom dates) to either mean temperatures or mean chill and heat accumulation rates, based on long-term weather and phenology records (Luedeling and Gassner (2012) <doi.org/10.1016/j.agrformet.2011.10.020>). As of version 0.65, it also includes functions for generating weather scenarios with a weather generator, for conducting climate change analyses for temperature-based climatic metrics and for plotting results from such analyses. Since version 0.70, 'chillR' contains a function for interpolating hourly temperature records.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>

Diff between chillR versions 0.70.17 dated 2019-05-26 and 0.70.21 dated 2019-11-05

 DESCRIPTION                         |    8 +-
 MD5                                 |   64 ++++++++++----------
 R/PLS_chill_force.R                 |   48 +++++++++++----
 R/PLS_pheno.R                       |    2 
 R/chillR-package.R                  |    6 -
 R/chillR.R                          |    2 
 R/getClimateWizardData.R            |    2 
 R/get_weather.R                     |    4 -
 R/handle_gsod.R                     |   16 ++---
 R/make_daily_chill_figures.R        |    4 -
 R/make_multi_pheno_trend_plot.R     |   12 +--
 R/make_pheno_trend_plot.R           |   14 ++--
 R/plot_pheno_results.R              |  115 ++++++++++++++++++++++++++----------
 R/save_temperature_scenarios.R      |   12 +--
 R/tempResponse.R                    |   12 ++-
 R/tempResponse_daily_list.R         |    6 +
 build/vignette.rds                  |binary
 inst/doc/hourly_temperatures.html   |   10 ++-
 man/PLS_chill_force.Rd              |   17 +++++
 man/PLS_pheno.Rd                    |    2 
 man/chillR-package.Rd               |    6 -
 man/getClimateWizardData.Rd         |    2 
 man/get_weather.Rd                  |    4 -
 man/handle_gsod.Rd                  |   16 ++---
 man/load_ClimateWizard_scenarios.Rd |    4 -
 man/load_temperature_scenarios.Rd   |    4 -
 man/make_daily_chill_figures.Rd     |    4 -
 man/make_multi_pheno_trend_plot.Rd  |   12 +--
 man/make_pheno_trend_plot.Rd        |   14 ++--
 man/plot_PLS.Rd                     |   32 +++++++++-
 man/save_temperature_scenarios.Rd   |    4 -
 man/tempResponse.Rd                 |    5 +
 man/tempResponse_daily_list.Rd      |    6 +
 33 files changed, 305 insertions(+), 164 deletions(-)

More information about chillR at CRAN
Permanent link

Package biostat3 updated to version 0.1.4 with previous version 0.1.3 dated 2018-11-02

Title: Utility Functions, Datasets and Extended Examples for Survival Analysis
Description: Utility functions, datasets and extended examples for survival analysis. This extends a range of other packages, some simple wrappers for time-to-event analyses, datasets, and extensive examples in HTML with R scripts. The package also supports the course Biostatistics III entitled "Survival analysis for epidemiologists in R".
Author: Annika Tillander [ctb], Andreas Karlsson [aut], Johan Zetterqvist [ctb], Peter Strom [ctb], Benedicte Delcoigne [ctb], Mark Clements [aut, cre]
Maintainer: Mark Clements <mark.clements@ki.se>

Diff between biostat3 versions 0.1.3 dated 2018-11-02 and 0.1.4 dated 2019-11-05

 biostat3-0.1.3/biostat3/data/colon.RData            |only
 biostat3-0.1.3/biostat3/data/diet.RData             |only
 biostat3-0.1.3/biostat3/data/melanoma.RData         |only
 biostat3-0.1.4/biostat3/DESCRIPTION                 |   12 
 biostat3-0.1.4/biostat3/MD5                         |  204 ++++----
 biostat3-0.1.4/biostat3/NAMESPACE                   |    3 
 biostat3-0.1.4/biostat3/R/biostat3-internal.R       |  128 -----
 biostat3-0.1.4/biostat3/R/lifetab2.R                |   22 
 biostat3-0.1.4/biostat3/build/partial.rdb           |binary
 biostat3-0.1.4/biostat3/data/brv.rda                |binary
 biostat3-0.1.4/biostat3/data/colon.rda              |binary
 biostat3-0.1.4/biostat3/data/colon_sample.rda       |binary
 biostat3-0.1.4/biostat3/data/diet.rda               |binary
 biostat3-0.1.4/biostat3/data/melanoma.rda           |binary
 biostat3-0.1.4/biostat3/data/popmort.rda            |binary
 biostat3-0.1.4/biostat3/inst/doc/Rmd-run.R          |    9 
 biostat3-0.1.4/biostat3/inst/doc/index.Rmd          |    9 
 biostat3-0.1.4/biostat3/inst/doc/index.html         |   26 -
 biostat3-0.1.4/biostat3/inst/doc/labs/figure        |only
 biostat3-0.1.4/biostat3/inst/doc/labs/q1-woven.html |only
 biostat3-0.1.4/biostat3/inst/doc/labs/q1.Rmd        |  105 +---
 biostat3-0.1.4/biostat3/inst/doc/labs/q1.html       |  229 +++++++--
 biostat3-0.1.4/biostat3/inst/doc/labs/q10.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q10.html      |  129 +++--
 biostat3-0.1.4/biostat3/inst/doc/labs/q11.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q11.html      |   49 +
 biostat3-0.1.4/biostat3/inst/doc/labs/q12.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q12.html      |   47 +
 biostat3-0.1.4/biostat3/inst/doc/labs/q13.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q13.html      |   39 +
 biostat3-0.1.4/biostat3/inst/doc/labs/q14.Rmd       |only
 biostat3-0.1.4/biostat3/inst/doc/labs/q2.Rmd        |   65 +-
 biostat3-0.1.4/biostat3/inst/doc/labs/q2.html       |  167 ++----
 biostat3-0.1.4/biostat3/inst/doc/labs/q22.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q22.html      |   91 ++-
 biostat3-0.1.4/biostat3/inst/doc/labs/q23.Rmd       |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q23.html      |  107 ++--
 biostat3-0.1.4/biostat3/inst/doc/labs/q25.Rmd       |    9 
 biostat3-0.1.4/biostat3/inst/doc/labs/q25.html      |   82 +--
 biostat3-0.1.4/biostat3/inst/doc/labs/q28.Rmd       |  152 ++----
 biostat3-0.1.4/biostat3/inst/doc/labs/q28.html      |  185 ++++---
 biostat3-0.1.4/biostat3/inst/doc/labs/q3.Rmd        |   27 -
 biostat3-0.1.4/biostat3/inst/doc/labs/q3.html       |   91 ++-
 biostat3-0.1.4/biostat3/inst/doc/labs/q4.Rmd        |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q4.html       |   61 +-
 biostat3-0.1.4/biostat3/inst/doc/labs/q6.Rmd        |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q6.html       |   93 ++-
 biostat3-0.1.4/biostat3/inst/doc/labs/q7.Rmd        |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q7.html       |  117 ++--
 biostat3-0.1.4/biostat3/inst/doc/labs/q8.Rmd        |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q8.html       |  216 +++++---
 biostat3-0.1.4/biostat3/inst/doc/labs/q9.Rmd        |    7 
 biostat3-0.1.4/biostat3/inst/doc/labs/q9.html       |  131 +++--
 biostat3-0.1.4/biostat3/inst/doc/labs/tmp           |only
 biostat3-0.1.4/biostat3/inst/doc/markdown-ess.html  |only
 biostat3-0.1.4/biostat3/inst/doc/q14.R              |only
 biostat3-0.1.4/biostat3/inst/doc/q2.R               |   21 
 biostat3-0.1.4/biostat3/inst/doc/q28.R              |  240 ++++-----
 biostat3-0.1.4/biostat3/inst/doc/q4.R               |   10 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q1.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q1.html  |   95 ---
 biostat3-0.1.4/biostat3/inst/doc/solutions/q10.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q10.html |  259 +++++-----
 biostat3-0.1.4/biostat3/inst/doc/solutions/q11.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q11.html |   67 +-
 biostat3-0.1.4/biostat3/inst/doc/solutions/q12.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q12.html |   99 ++--
 biostat3-0.1.4/biostat3/inst/doc/solutions/q13.Rmd  |   27 -
 biostat3-0.1.4/biostat3/inst/doc/solutions/q13.html |   55 +-
 biostat3-0.1.4/biostat3/inst/doc/solutions/q14.Rmd  |only
 biostat3-0.1.4/biostat3/inst/doc/solutions/q14.html |only
 biostat3-0.1.4/biostat3/inst/doc/solutions/q2.Rmd   |   88 +--
 biostat3-0.1.4/biostat3/inst/doc/solutions/q2.html  |  238 +++++----
 biostat3-0.1.4/biostat3/inst/doc/solutions/q22.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q22.html |  115 ++--
 biostat3-0.1.4/biostat3/inst/doc/solutions/q23.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q23.html |  322 +++++++------
 biostat3-0.1.4/biostat3/inst/doc/solutions/q25.Rmd  |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q25.html |  183 +++----
 biostat3-0.1.4/biostat3/inst/doc/solutions/q28.Rmd  |   69 +-
 biostat3-0.1.4/biostat3/inst/doc/solutions/q28.html |  492 +-------------------
 biostat3-0.1.4/biostat3/inst/doc/solutions/q3.Rmd   |    9 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q3.html  |  119 ++--
 biostat3-0.1.4/biostat3/inst/doc/solutions/q4.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q4.html  |   63 +-
 biostat3-0.1.4/biostat3/inst/doc/solutions/q6.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q6.html  |  156 +++---
 biostat3-0.1.4/biostat3/inst/doc/solutions/q7.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q7.html  |  129 +++--
 biostat3-0.1.4/biostat3/inst/doc/solutions/q8.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q8.html  |  224 +++++----
 biostat3-0.1.4/biostat3/inst/doc/solutions/q9.Rmd   |    7 
 biostat3-0.1.4/biostat3/inst/doc/solutions/q9.html  |  474 +------------------
 biostat3-0.1.4/biostat3/man/brv.Rd                  |   32 -
 biostat3-0.1.4/biostat3/man/colon.Rd                |   53 --
 biostat3-0.1.4/biostat3/man/colon_sample.Rd         |    8 
 biostat3-0.1.4/biostat3/man/diet.Rd                 |   38 -
 biostat3-0.1.4/biostat3/man/lifetab.Rd              |    7 
 biostat3-0.1.4/biostat3/man/lifetab2.Rd             |   11 
 biostat3-0.1.4/biostat3/man/melanoma.Rd             |   53 --
 biostat3-0.1.4/biostat3/man/popmort.Rd              |    8 
 101 files changed, 3131 insertions(+), 3399 deletions(-)

More information about biostat3 at CRAN
Permanent link

Package inspectdf updated to version 0.0.7 with previous version 0.0.6 dated 2019-09-29

Title: Inspection, Comparison and Visualisation of Data Frames
Description: A collection of utilities for columnwise summary, comparison and visualisation of data frames. Functions report missingness, categorical levels, numeric distribution, correlation, column types and memory usage.
Author: Alastair Rushworth [aut, cre], David Wilkins [ctb]
Maintainer: Alastair Rushworth <alastairmrushworth@gmail.com>

Diff between inspectdf versions 0.0.6 dated 2019-09-29 and 0.0.7 dated 2019-11-05

 DESCRIPTION             |    6 +++---
 MD5                     |   30 +++++++++++++++---------------
 NAMESPACE               |    1 +
 NEWS.md                 |   15 +++++++++++++--
 R/apply_across_groups.R |    8 +++++---
 R/cor_test.R            |    4 ++--
 R/format_size.R         |    5 +----
 R/inspect_cor.R         |    8 +++++---
 R/inspect_mem.R         |    6 ++++--
 R/plot_cor.R            |   18 ++++++++----------
 R/plot_grouped.R        |   47 +++++++++++++++++++++++++++++++++--------------
 R/plot_num.R            |    1 -
 R/show_plot.R           |    8 ++++----
 R/zzz.R                 |    3 ++-
 man/inspect_cor.Rd      |    8 +++++---
 man/inspect_mem.Rd      |    1 +
 16 files changed, 102 insertions(+), 67 deletions(-)

More information about inspectdf at CRAN
Permanent link

Package clampSeg updated to version 1.0-5 with previous version 1.0-4 dated 2018-05-25

Title: Idealisation of Patch Clamp Recordings
Description: Allows for idealisation of patch clamp recordings by implementing the non-parametric JUmp Local dEconvolution Segmentation (JULES) filter, see F. Pein, I. Tecuapetla-Gómez, O. Schütte, C. Steinem, and A. Munk (2017) <arXiv:1706.03671>.
Author: Pein Florian [aut, cre], Thomas Hotz [ctb], Inder Tecuapetla-Gómez [ctb], Timo Aspelmeier [ctb]
Maintainer: Pein Florian <fp366@cam.ac.uk>

Diff between clampSeg versions 1.0-4 dated 2018-05-25 and 1.0-5 dated 2019-11-05

 ChangeLog               |    6 ++++++
 DESCRIPTION             |   10 +++++-----
 MD5                     |    6 +++---
 man/clampSeg-package.Rd |    3 ++-
 4 files changed, 16 insertions(+), 9 deletions(-)

More information about clampSeg at CRAN
Permanent link

Package exampletestr updated to version 1.5.2 with previous version 1.5.1 dated 2019-08-04

Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and use them to create shells (skeletons which must be manually completed by the user) of test files to be tested with the 'testthat' package. Sort of like python 'doctests' for R.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>), Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>), Thomas Quinn [rev] (<https://orcid.org/0000-0003-0286-6329>), Laurent Gatto [rev] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between exampletestr versions 1.5.1 dated 2019-08-04 and 1.5.2 dated 2019-11-05

 DESCRIPTION                          |    8 ++++----
 MD5                                  |   10 +++++-----
 NEWS.md                              |    6 ++++++
 inst/doc/one-file-at-a-time.html     |    6 +++---
 inst/doc/one-function-at-a-time.html |    4 ++--
 inst/doc/whole-package.html          |    4 ++--
 6 files changed, 22 insertions(+), 16 deletions(-)

More information about exampletestr at CRAN
Permanent link

Package rmumps updated to version 5.2.1-6 with previous version 5.2.1-5 dated 2019-08-28

Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel sparse direct Solver) are wrapped in a class whose methods can be used for sequentially solving a sparse linear system (symmetric or not) with one or many right hand sides (dense or sparse). There is a possibility to do separately symbolic analysis, LU (or LDL^t) factorization and system solving. Third part ordering libraries are included and can be used: PORD, METIS, SCOTCH. MUMPS method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194> and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre], Emmanuel Agullo [ctb], Patrick Amestoy [ctb], Maurice Bremond [ctb], Alfredo Buttari [ctb], Philippe Combes [ctb], Marie Durand [ctb], Aurelia Fevre [ctb], Abdou Guermouche [ctb], Guillaume Joslin [ctb], Jacko Koster [ctb], Jean-Yves L'Excellent [ctb], Stephane Pralet [ctb], Chiara Puglisi [ctb], Francois-Henry Rouet [ctb], Wissam Sid-Lakhdar [ctb], Tzvetomila Slavova [ctb], Bora Ucar [ctb], Clement Weisbecker [ctb], Juergen Schulze [ctb], George Karypis [ctb], Douglas C. Schmidt [ctb], Isamu Hasegawa [ctb], Alexander Chemeris [ctb], Makoto Matsumoto [ctb], Takuji Nishimura [ctb], Francois Pellegrini [ctb], David Goudin [ctb], Pascal Henon [ctb], Pierre Ramet [ctb], Sebastien Fourestier [ctb], Jun-Ho Her [ctb], Cedric Chevalier [ctb], Timothy A. Davis [ctb], Iain S. Duff [ctb], John K. Reid [ctb], Richard Stallman [ctb], Samuel Thibault [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>

Diff between rmumps versions 5.2.1-5 dated 2019-08-28 and 5.2.1-6 dated 2019-11-05

 DESCRIPTION                       |    8 -
 MD5                               |   22 ++-
 NEWS                              |   10 +
 R/RcppExports.R                   |   96 +++++++++++++
 inst/include/rmumps.h             |    2 
 inst/include/rmumps_RcppExports.h |only
 man/Rmumps__del_ptr.Rd            |only
 man/Rmumps__get_permutation.Rd    |only
 man/Rmumps__ptr_ijv.Rd            |only
 man/Rmumps__set_mat_ptr.Rd        |only
 man/Rmumps__set_permutation.Rd    |only
 man/Rmumps__solveptr.Rd           |only
 man/Rmumps__triplet.Rd            |only
 man/rmumps-package.Rd             |    2 
 src/RcppExports.cpp               |  274 ++++++++++++++++++++++++++++++++++++++
 src/rmumps_module.cpp             |  104 ++++++++++++++
 16 files changed, 502 insertions(+), 16 deletions(-)

More information about rmumps at CRAN
Permanent link

Package RColetum updated to version 0.2.1 with previous version 0.2.0 dated 2018-10-29

Title: Access your Coletum's Data from API
Description: Get your data (forms, structures, answers) from Coletum <https://coletum.com> to handle and analyse.
Author: André Smaniotto [aut, cre], Marcelo Magnani [aut], Rodrigo Sant'Ana [aut], GeoSapiens [cph, fnd]
Maintainer: André Smaniotto <smaniotto@geosapiens.com.br>

Diff between RColetum versions 0.2.0 dated 2018-10-29 and 0.2.1 dated 2019-11-05

 DESCRIPTION                                 |    8 
 MD5                                         |   28 
 NAMESPACE                                   |   10 
 NEWS.md                                     |   44 
 R/GetAnswers.R                              |  670 
 R/GetFormStructure.R                        |  196 
 R/utils.R                                   |  692 
 README.md                                   |  268 
 man/GetAnswers.Rd                           |  226 
 man/GetFormStructure.Rd                     |   80 
 man/GetForms.Rd                             |   84 
 man/RColetum-package.Rd                     |   92 
 tests/testthat/test-GetAnswers.R            | 1849 
 tests/testthat/test-GetAnswersComplexForm.R |163904 ++++++++++++++--------------
 tests/testthat/test-GetFormStructure.R      |  468 
 15 files changed, 84312 insertions(+), 84307 deletions(-)

More information about RColetum at CRAN
Permanent link

Package ows4R updated to version 0.1-3 with previous version 0.1-2 dated 2019-06-18

Title: Interface to OGC Web-Services (OWS)
Description: Provides an Interface to Web-Services defined as standards by the Open Geospatial Consortium (OGC), including Web Feature Service (WFS) for vector data, Catalogue Service (CSW) for ISO/OGC metadata and associated standards such as the common web-service specification (OWS) and OGC Filter Encoding. The long-term purpose is to add support for additional OGC service standards such as Web Coverage Service (WCS) and Web Processing Service (WPS).
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>), Norbert Billet [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between ows4R versions 0.1-2 dated 2019-06-18 and 0.1-3 dated 2019-11-05

 DESCRIPTION                    |    8 +++----
 MD5                            |   43 ++++++++++++++++++++---------------------
 NEWS.md                        |only
 R/CSWClient.R                  |   18 ++++++++---------
 R/CSWGetRecordById.R           |    6 ++---
 R/CSWGetRecords.R              |    6 ++---
 R/CSWHarvest.R                 |    4 +--
 R/CSWTransaction.R             |    4 +--
 R/OGCAbstractObject.R          |   14 ++++++-------
 R/OWSClient.R                  |   11 ++++++++--
 R/OWSRequest.R                 |   29 +++++++++++++++++++++------
 R/WFSDescribeFeatureType.R     |    7 +++---
 R/WFSFeatureType.R             |   14 +++++++++++++
 R/WFSGetFeature.R              |    7 +++---
 R/ows4R.R                      |    4 +--
 README.md                      |    2 -
 inst/extdata/data/metadata.xml |   16 +++++++++++++++
 man/CSWClient.Rd               |    6 ++---
 man/CSWGetRecordById.Rd        |    2 -
 man/CSWGetRecords.Rd           |    2 -
 man/WFSDescribeFeatureType.Rd  |    2 -
 man/WFSGetFeature.Rd           |    2 -
 man/ows4R.Rd                   |    4 +--
 23 files changed, 134 insertions(+), 77 deletions(-)

More information about ows4R at CRAN
Permanent link

Package meteoland updated to version 0.8.3 with previous version 0.8.1 dated 2019-05-29

Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Cáceres [aut, cre], Nicolas Martin [aut], Víctor Granda [aut], Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>

Diff between meteoland versions 0.8.1 dated 2019-05-29 and 0.8.3 dated 2019-11-05

 meteoland-0.8.1/meteoland/NEWS                              |only
 meteoland-0.8.1/meteoland/inst/doc/Meteorology.R            |only
 meteoland-0.8.1/meteoland/inst/doc/Meteorology.Rnw          |only
 meteoland-0.8.1/meteoland/inst/doc/Meteorology.pdf          |only
 meteoland-0.8.1/meteoland/vignettes/Meteorology-008.pdf     |only
 meteoland-0.8.1/meteoland/vignettes/Meteorology-009.pdf     |only
 meteoland-0.8.1/meteoland/vignettes/Meteorology-011.pdf     |only
 meteoland-0.8.1/meteoland/vignettes/Meteorology-025.pdf     |only
 meteoland-0.8.1/meteoland/vignettes/Meteorology.Rnw         |only
 meteoland-0.8.3/meteoland/DESCRIPTION                       |   15 
 meteoland-0.8.3/meteoland/MD5                               |   40 
 meteoland-0.8.3/meteoland/NAMESPACE                         |    1 
 meteoland-0.8.3/meteoland/NEWS.md                           |only
 meteoland-0.8.3/meteoland/R/correctionpoints.R              |    6 
 meteoland-0.8.3/meteoland/R/extractNetCDF.R                 |   59 
 meteoland-0.8.3/meteoland/R/sysdata.rda                     |binary
 meteoland-0.8.3/meteoland/build/vignette.rds                |binary
 meteoland-0.8.3/meteoland/data/examplecorrectiondata.rda    |binary
 meteoland-0.8.3/meteoland/data/examplegridtopography.rda    |binary
 meteoland-0.8.3/meteoland/data/exampleinterpolationdata.rda |binary
 meteoland-0.8.3/meteoland/inst/CITATION                     |    4 
 meteoland-0.8.3/meteoland/inst/doc/UserGuide.R              |    3 
 meteoland-0.8.3/meteoland/inst/doc/UserGuide.Rmd            |    5 
 meteoland-0.8.3/meteoland/inst/doc/UserGuide.html           | 1091 ++++++------
 meteoland-0.8.3/meteoland/man/defaultCorrectionParams.Rd    |    4 
 meteoland-0.8.3/meteoland/vignettes/UserGuide.Rmd           |    5 
 26 files changed, 652 insertions(+), 581 deletions(-)

More information about meteoland at CRAN
Permanent link

Package indicspecies updated to version 1.7.8 with previous version 1.7.6 dated 2016-08-29

Title: Relationship Between Species and Groups of Sites
Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
Author: Miquel De Cáceres [aut, cre], Florian Jansen [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>

Diff between indicspecies versions 1.7.6 dated 2016-08-29 and 1.7.8 dated 2019-11-05

 indicspecies-1.7.6/indicspecies/vignettes/PigeonExample-005.pdf        |only
 indicspecies-1.7.6/indicspecies/vignettes/indicspeciesTutorial-032.pdf |only
 indicspecies-1.7.8/indicspecies/DESCRIPTION                            |   21 
 indicspecies-1.7.8/indicspecies/MD5                                    |   70 
 indicspecies-1.7.8/indicspecies/NEWS.md                                |only
 indicspecies-1.7.8/indicspecies/R/combinespecies.r                     |  102 -
 indicspecies-1.7.8/indicspecies/R/coverage.r                           |  164 +-
 indicspecies-1.7.8/indicspecies/R/indicators.r                         |  436 +++--
 indicspecies-1.7.8/indicspecies/R/multipatt.r                          |  483 +++---
 indicspecies-1.7.8/indicspecies/R/plotcoverage.r                       |   58 
 indicspecies-1.7.8/indicspecies/R/predict.indicators.r                 |  108 -
 indicspecies-1.7.8/indicspecies/R/print.indicators.r                   |  113 -
 indicspecies-1.7.8/indicspecies/R/pruneindicators.r                    |  258 +--
 indicspecies-1.7.8/indicspecies/R/signassoc.r                          |  178 +-
 indicspecies-1.7.8/indicspecies/R/strassoc.r                           |  744 ++++------
 indicspecies-1.7.8/indicspecies/build/vignette.rds                     |binary
 indicspecies-1.7.8/indicspecies/inst/doc/PigeonExample.R               |  296 +--
 indicspecies-1.7.8/indicspecies/inst/doc/PigeonExample.Rnw             |  354 ++--
 indicspecies-1.7.8/indicspecies/inst/doc/PigeonExample.pdf             |binary
 indicspecies-1.7.8/indicspecies/inst/doc/indicspeciesTutorial.R        |  510 +++---
 indicspecies-1.7.8/indicspecies/inst/doc/indicspeciesTutorial.Rnw      |  603 ++++----
 indicspecies-1.7.8/indicspecies/inst/doc/indicspeciesTutorial.pdf      |binary
 indicspecies-1.7.8/indicspecies/man/combinespecies.Rd                  |  116 -
 indicspecies-1.7.8/indicspecies/man/coverage.Rd                        |  146 -
 indicspecies-1.7.8/indicspecies/man/indicators.Rd                      |  210 +-
 indicspecies-1.7.8/indicspecies/man/indicspecies-package.Rd            |   80 -
 indicspecies-1.7.8/indicspecies/man/multipatt.Rd                       |  144 -
 indicspecies-1.7.8/indicspecies/man/nicheoverlap.Rd                    |  174 +-
 indicspecies-1.7.8/indicspecies/man/nichevar.Rd                        |  226 +--
 indicspecies-1.7.8/indicspecies/man/plotniche.Rd                       |  152 +-
 indicspecies-1.7.8/indicspecies/man/predict.indicators.Rd              |  124 -
 indicspecies-1.7.8/indicspecies/man/pruneindicators.Rd                 |  116 -
 indicspecies-1.7.8/indicspecies/man/signassoc.Rd                       |  110 -
 indicspecies-1.7.8/indicspecies/man/strassoc.Rd                        |  105 -
 indicspecies-1.7.8/indicspecies/man/summary.multipatt.Rd               |   96 -
 indicspecies-1.7.8/indicspecies/vignettes/PigeonExample.Rnw            |  354 ++--
 indicspecies-1.7.8/indicspecies/vignettes/indicspeciesTutorial-033.pdf |only
 indicspecies-1.7.8/indicspecies/vignettes/indicspeciesTutorial.Rnw     |  603 ++++----
 38 files changed, 3669 insertions(+), 3585 deletions(-)

More information about indicspecies at CRAN
Permanent link

Package Ecdat updated to version 0.3-4 with previous version 0.3-3 dated 2019-09-29

Title: Data Sets for Econometrics
Description: Data sets for econometrics, including political science.
Author: Yves Croissant <yves.croissant@let.ish-lyon.cnrs.fr> and Spencer Graves
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>

Diff between Ecdat versions 0.3-3 dated 2019-09-29 and 0.3-4 dated 2019-11-05

 DESCRIPTION                  |    8 ++++----
 MD5                          |   18 +++++++++---------
 NEWS                         |    2 ++
 data/Mroz.rda                |binary
 data/nuclearWeaponStates.rda |binary
 man/Mroz.Rd                  |   26 +++++++++++++++-----------
 man/USFinanceIndustry.Rd     |    2 ++
 man/bankingCrises.Rd         |    2 ++
 man/incomeInequality.Rd      |    4 +++-
 man/nuclearWeaponStates.Rd   |   10 ++++++----
 10 files changed, 43 insertions(+), 29 deletions(-)

More information about Ecdat at CRAN
Permanent link

Package clusterSim updated to version 0.48-1 with previous version 0.47-4 dated 2019-05-24

Title: Searching for Optimal Clustering Procedure for a Data Set
Description: Distance measures (GDM1, GDM2, Sokal-Michener, Bray-Curtis, for symbolic interval-valued data), cluster quality indices (Calinski-Harabasz, Baker-Hubert, Hubert-Levine, Silhouette, Krzanowski-Lai, Hartigan, Gap, Davies-Bouldin), data normalization formulas (metric data, interval-valued symbolic data), data generation (typical and non-typical data), HINoV method, replication analysis, linear ordering methods, spectral clustering, agreement indices between two partitions, plot functions (for categorical and symbolic interval-valued data). (MILLIGAN, G.W., COOPER, M.C. (1985) <doi:10.1007/BF02294245>, HUBERT, L., ARABIE, P. (1985) <doi:10.1007%2FBF01908075>, RAND, W.M. (1971) <doi:10.1080/01621459.1971.10482356>, JAJUGA, K., WALESIAK, M. (2000) <doi:10.1007/978-3-642-57280-7_11>, MILLIGAN, G.W., COOPER, M.C. (1988) <doi:10.1007/BF01897163>, JAJUGA, K., WALESIAK, M., BAK, A. (2003) <doi:10.1007/978-3-642-55721-7_12>, DAVIES, D.L., BOULDIN, D.W. (1979) <doi:10.1109/TPAMI.1979.4766909>, CALINSKI, T., HARABASZ, J. (1974) <doi:10.1080/03610927408827101>, HUBERT, L. (1974) <doi:10.1080/01621459.1974.10480191>, TIBSHIRANI, R., WALTHER, G., HASTIE, T. (2001) <doi:10.1111/1467-9868.00293>, BRECKENRIDGE, J.N. (2000) <doi:10.1207/S15327906MBR3502_5>, WALESIAK, M., DUDEK, A. (2008) <doi:10.1007/978-3-540-78246-9_11>).
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl>, Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>

Diff between clusterSim versions 0.47-4 dated 2019-05-24 and 0.48-1 dated 2019-11-05

 clusterSim-0.47-4/clusterSim/inst/doc                        |only
 clusterSim-0.48-1/clusterSim/DESCRIPTION                     |    8 
 clusterSim-0.48-1/clusterSim/MD5                             |   82 +++------
 clusterSim-0.48-1/clusterSim/R/cluster.Sim.r                 |   99 +++++++++--
 clusterSim-0.48-1/clusterSim/R/index.C.r                     |only
 clusterSim-0.48-1/clusterSim/R/index.DB.r                    |    2 
 clusterSim-0.48-1/clusterSim/data/data_binary.rda            |binary
 clusterSim-0.48-1/clusterSim/data/data_interval.rda          |binary
 clusterSim-0.48-1/clusterSim/data/data_mixed.rda             |binary
 clusterSim-0.48-1/clusterSim/data/data_nominal.rda           |binary
 clusterSim-0.48-1/clusterSim/data/data_ordinal.rda           |binary
 clusterSim-0.48-1/clusterSim/data/data_ratio.rda             |binary
 clusterSim-0.48-1/clusterSim/inst/pdf/clusterSim_details.pdf |binary
 clusterSim-0.48-1/clusterSim/inst/pdf/indexC_details.pdf     |only
 clusterSim-0.48-1/clusterSim/inst/pdf/indexG3_details.pdf    |binary
 clusterSim-0.48-1/clusterSim/man/cluster.Gen.rd              |    5 
 clusterSim-0.48-1/clusterSim/man/cluster.Sim.rd              |    8 
 clusterSim-0.48-1/clusterSim/man/index.C.rd                  |only
 clusterSim-0.48-1/clusterSim/man/index.DB.rd                 |    6 
 clusterSim-0.48-1/clusterSim/man/index.G1.rd                 |    4 
 clusterSim-0.48-1/clusterSim/man/index.G2.rd                 |    4 
 clusterSim-0.48-1/clusterSim/man/index.G3.rd                 |   12 -
 clusterSim-0.48-1/clusterSim/man/index.GAP.rd                |    2 
 clusterSim-0.48-1/clusterSim/man/index.H.rd                  |    6 
 clusterSim-0.48-1/clusterSim/man/index.KL.rd                 |    6 
 clusterSim-0.48-1/clusterSim/man/index.S.rd                  |    4 
 clusterSim-0.48-1/clusterSim/man/ordinalToMetric.rd          |    5 
 clusterSim-0.48-1/clusterSim/man/shapes.blocks3d.rd          |    3 
 clusterSim-0.48-1/clusterSim/man/shapes.circles2.rd          |    3 
 clusterSim-0.48-1/clusterSim/man/shapes.circles3.rd          |    3 
 clusterSim-0.48-1/clusterSim/man/shapes.two.moon.rd          |    3 
 clusterSim-0.48-1/clusterSim/man/shapes.worms.rd             |    3 
 clusterSim-0.48-1/clusterSim/man/speccl.rd                   |    4 
 33 files changed, 170 insertions(+), 102 deletions(-)

More information about clusterSim at CRAN
Permanent link

Package eplusr updated to version 0.10.4 with previous version 0.10.3 dated 2019-07-08

Title: A Toolkit for Using Whole Building Simulation Program 'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program 'EnergyPlus'(<https://energyplus.net>), which enables programmatic navigation, modification of 'EnergyPlus' models and makes it less painful to do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>

Diff between eplusr versions 0.10.3 dated 2019-07-08 and 0.10.4 dated 2019-11-05

 DESCRIPTION          |    6 
 MD5                  |   12 
 NEWS.md              |    6 
 R/idf.R              |   12 
 build/vignette.rds   |binary
 inst/doc/eplusr.R    |  768 ++++++------
 inst/doc/eplusr.html | 3151 +++++++++++++++++++++++++--------------------------
 7 files changed, 1990 insertions(+), 1965 deletions(-)

More information about eplusr at CRAN
Permanent link

Package cbsodataR updated to version 0.3.5 with previous version 0.3.4 dated 2019-08-20

Title: Statistics Netherlands (CBS) Open Data API Client
Description: The data and meta data from Statistics Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses the open data API of Statistics Netherlands.
Author: Edwin de Jonge [aut, cre], Sara Houweling [ctb]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>

Diff between cbsodataR versions 0.3.4 dated 2019-08-20 and 0.3.5 dated 2019-11-05

 cbsodataR-0.3.4/cbsodataR/inst/doc/cbsodataR.R    |only
 cbsodataR-0.3.4/cbsodataR/inst/doc/cbsodataR.Rmd  |only
 cbsodataR-0.3.4/cbsodataR/inst/doc/cbsodataR.html |only
 cbsodataR-0.3.4/cbsodataR/vignettes/cbsodataR.Rmd |only
 cbsodataR-0.3.5/cbsodataR/DESCRIPTION             |    6 +++---
 cbsodataR-0.3.5/cbsodataR/MD5                     |   16 +++++++++-------
 cbsodataR-0.3.5/cbsodataR/NEWS.md                 |    4 ++++
 cbsodataR-0.3.5/cbsodataR/build/vignette.rds      |binary
 cbsodataR-0.3.5/cbsodataR/inst/cbsodataR.Rmd      |only
 cbsodataR-0.3.5/cbsodataR/inst/doc/cbsodata.R     |only
 cbsodataR-0.3.5/cbsodataR/inst/doc/cbsodata.Rmd   |only
 cbsodataR-0.3.5/cbsodataR/inst/doc/cbsodata.html  |only
 cbsodataR-0.3.5/cbsodataR/vignettes/cbsodata.Rmd  |only
 cbsodataR-0.3.5/cbsodataR/vignettes/cbsodataR.md  |only
 14 files changed, 16 insertions(+), 10 deletions(-)

More information about cbsodataR at CRAN
Permanent link

Package baseline updated to version 1.2-2 with previous version 1.2-1 dated 2015-07-05

Title: Baseline Correction of Spectra
Description: Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
Author: Kristian Hovde Liland [aut, cre], Bjørn-Helge Mevik [aut], Roberto Canteri [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>

Diff between baseline versions 1.2-1 dated 2015-07-05 and 1.2-2 dated 2019-11-05

 DESCRIPTION                      |   10 +-
 MD5                              |   88 ++++++++++++------------
 NAMESPACE                        |    2 
 NEWS                             |    4 +
 R/baseline.R                     |    9 ++
 R/baseline.TAP.R                 |only
 R/optimisation.R                 |   37 ++++++----
 README.md                        |only
 inst                             |only
 man/PLSRTest-class.Rd            |    2 
 man/algorithm.Rd                 |    2 
 man/baseline-class.Rd            |    2 
 man/baseline-package.Rd          |    8 +-
 man/baseline.Rd                  |   10 +-
 man/baseline.TAP.Rd              |only
 man/baseline.als.Rd              |    3 
 man/baseline.fillPeaks.Rd        |    5 +
 man/baseline.irls.Rd             |    3 
 man/baseline.lowpass.Rd          |    3 
 man/baseline.medianWindow.Rd     |    3 
 man/baseline.modpolyfit.Rd       |    3 
 man/baseline.peakDetection.Rd    |    3 
 man/baseline.rfbaseline.Rd       |    3 
 man/baseline.rollingBall.Rd      |    3 
 man/baseline.shirley.Rd          |    2 
 man/baselineAlg-class.Rd         |    2 
 man/baselineAlgResult-class.Rd   |    2 
 man/baselineAlgTest-class.Rd     |    2 
 man/baselineEnv.Rd               |    2 
 man/baselineGUI.Rd               |    2 
 man/custom.baseline.Rd           |  140 +++++++++++++++++++--------------------
 man/funcName.Rd                  |    2 
 man/getBaseline.Rd               |    2 
 man/ind.min.Rd                   |    2 
 man/milk.Rd                      |    4 -
 man/name.Rd                      |    2 
 man/optimWizard.Rd               |    2 
 man/overall.min.Rd               |    2 
 man/param.Rd                     |    2 
 man/param.ind.min.Rd             |    2 
 man/plotBaseline.Rd              |    2 
 man/plotOptim.Rd                 |    2 
 man/predictionResult-class.Rd    |    2 
 man/predictionTest-class.Rd      |    2 
 man/qualMeas.Rd                  |    2 
 man/ridgeRegressionTest-class.Rd |    2 
 man/runTest.Rd                   |    2 
 47 files changed, 218 insertions(+), 171 deletions(-)

More information about baseline at CRAN
Permanent link

Package sunburstR updated to version 2.1.3 with previous version 2.1.2 dated 2019-10-06

Title: Sunburst 'Htmlwidget'
Description: Make interactive 'd3.js' sequence sunburst diagrams in R with the convenience and infrastructure of an 'htmlwidget'.
Author: Mike Bostock [aut, cph] (d3.js library, http://d3js.org), Kerry Rodden [aut, cph] (sequences library in htmlwidgets/lib, https://gist.github.com/kerryrodden/7090426), Kevin Warne [aut, cph] (d2b sunburst library in htmlwidgets/lib, https://github.com/d2bjs/d2b), Kent Russell [aut, cre] (R interface), Florian Breitwieser [ctb] (R interface), CJ Yetman [ctb] (R interface, <https://orcid.org/0000-0001-5099-9500>)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

Diff between sunburstR versions 2.1.2 dated 2019-10-06 and 2.1.3 dated 2019-11-05

 DESCRIPTION                              |   11 ++++-----
 MD5                                      |   20 +++++++++-------
 NAMESPACE                                |    1 
 NEWS.md                                  |    7 +++++
 R/d2b.R                                  |   37 +++++++++++++++++++++++++++++--
 inst/doc/sunburst-2-0-0.html             |   22 ++++++++++--------
 inst/examples/example_sund2bBreadcrumb.R |only
 inst/examples/example_sund2bTooltip.R    |    6 -----
 inst/htmlwidgets/sund2b.js               |    4 +++
 man/sund2b.Rd                            |    8 +++++-
 man/sund2bBreadcrumb.Rd                  |only
 man/sund2bTooltip.Rd                     |    6 -----
 12 files changed, 84 insertions(+), 38 deletions(-)

More information about sunburstR at CRAN
Permanent link

New package dipsaus with initial version 0.0.2
Package: dipsaus
Type: Package
Title: A Dipping Sauce for Data Analysis and Visualizations
Version: 0.0.2
Authors@R: c( person("Zhengjia", "Wang", email = "zhengjia.wang@rice.edu", role = c("aut", "cre")) )
Description: Works as "add-ons" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using 'RcppParallel' and 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chipset, memory limit, etc.
URL: https://github.com/dipterix/dipsaus
BugReports: https://github.com/dipterix/dipsaus/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Language: en-US
Depends: R (>= 3.6.0)
Imports: utils, grDevices, shiny, cli, stringr, jsonlite (>= 1.6), future, future.apply, data.table, Rcpp, RcppParallel, crayon, fastmap, base64url, txtq, filelock, RcppRedis, digest, R6, qs, rlang (>= 0.4.0)
Suggests: microbenchmark, knitr, rmarkdown, promises, testthat
RoxygenNote: 6.1.1
SystemRequirements: GNU make
LinkingTo: Rcpp, RcppParallel
NeedsCompilation: yes
Packaged: 2019-11-02 17:32:34 UTC; beauchamplab
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <zhengjia.wang@rice.edu>
Repository: CRAN
Date/Publication: 2019-11-05 16:50:02 UTC

More information about dipsaus at CRAN
Permanent link

Package grainchanger (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-28 0.2.0
2019-03-08 0.1.0

Permanent link
New package SMARTAR with initial version 1.0.0
Package: SMARTAR
Type: Package
Title: Sequential Multiple Assignment Randomized Trial and Adaptive Randomization
Version: 1.0.0
Author: Tony Zhong <xiaobo.zhong@mountsinai.org> Bin Cheng <bc2159@cumc.columbia.edu> Ying Kuen Cheung <yc632@cumc.columbia.edu>
Maintainer: Tony Zhong <xiaobo.zhong@mountsinai.org>
Description: Primary data analysis for sequential multiple assignment randomization trial (SMART) and calibration tools for clinical trial planning purposes. The methods used for this package include: (1) Likelihood-based global test (hypothesis test, power calculation) by in Zhong X., Cheng, B., Qian M., Cheung Y.K. (2019) <doi:10.1016/j.cct.2019.105830>. (2) IPWE-based global test (hypotehsis test, power calculation) by Ogbagaber S.B., Karp J., Wahed A.S. (2016) <doi:10.1002/sim.6747>. (3) G estimates (pairwise comparison, power calculation) by Lavori R., Dawson P.W. (2012) <doi:10.1093/biostatistics/kxr016>. (4) IPW estimates (pairwise comparison, power calculation) by Murphy S.A. (2005) <doi:10.1002/sim.2022>. (5) SAMRT with adaptive randomization by Cheung Y.K. (2015) <doi:10.1111/biom.12258>.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Repository: CRAN
Imports: graphics, stats, MASS
NeedsCompilation: no
Packaged: 2019-11-05 14:52:18 UTC; Tony
Depends: R (>= 3.5.0)
Date/Publication: 2019-11-05 15:30:02 UTC

More information about SMARTAR at CRAN
Permanent link

Package rhoR updated to version 1.2.1.2 with previous version 1.2.1.1 dated 2019-04-01

Title: Rho for Inter Rater Reliability
Description: Rho is used to test the generalization of inter rater reliability (IRR) statistics. Calculating rho starts by generating a large number of simulated, fully-coded data sets: a sizable collection of hypothetical populations, all of which have a kappa value below a given threshold -- which indicates unacceptable agreement. Then kappa is calculated on a sample from each of those sets in the collection to see if it is equal to or higher than the kappa in then real sample. If less than five percent of the distribution of samples from the simulated data sets is greater than actual observed kappa, the null hypothesis is rejected and one can conclude that if the two raters had coded the rest of the data, we would have acceptable agreement (kappa above the threshold).
Author: Brendan Eagan [aut], Brad Rogers [aut], Rebecca Pozen [aut], Cody L Marquart [cre, aut] (<https://orcid.org/0000-0002-3387-6792>), David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>

Diff between rhoR versions 1.2.1.1 dated 2019-04-01 and 1.2.1.2 dated 2019-11-05

 DESCRIPTION                                       |   15 ++---
 MD5                                               |   51 +++++++++++--------
 NEWS.md                                           |   11 +++-
 R/calcKappa.R                                     |   36 ++++++-------
 R/createSimulatedCodeSet.R                        |   42 +++++++++------
 R/genPKcombo.R                                    |   40 +++++++-------
 R/generateKPs.R                                   |    5 +
 R/getHandSet.R                                    |    2 
 R/getHandSetIndices.R                             |   23 ++++----
 R/getTestSet.R                                    |    2 
 R/kappa.R                                         |   31 +++++------
 R/rho.R                                           |    2 
 README.md                                         |only
 data/codeSet.rda                                  |binary
 data/contingencyTable.rda                         |binary
 demo/backup/coverage-report.R                     |only
 inst                                              |only
 man/createSimulatedCodeSet.Rd                     |    2 
 man/figures                                       |only
 man/getHandSet.Rd                                 |    3 -
 man/kappa.Rd                                      |    2 
 tests/testthat/test-genPKcombo.R                  |only
 tests/testthat/test-test-createSimulatedCodeSet.R |only
 tests/testthat/test-test-getHandSetIndices.R      |only
 tests/testthat/test-test-rho.R                    |only
 tests/testthat/test-util-methods.R                |only
 tests/testthat/test.calckKappa.R                  |   50 ++++++++++++++++++
 tests/testthat/test.getHandSet.R                  |   34 ++++++++----
 tests/testthat/test.getTestSet.R                  |   59 +++++++++++++++++++---
 29 files changed, 274 insertions(+), 136 deletions(-)

More information about rhoR at CRAN
Permanent link

New package qtl2pleio with initial version 1.2.3
Type: Package
Package: qtl2pleio
Title: Testing Pleiotropy in Multiparental Populations
Version: 1.2.3
Authors@R: person(given = "Frederick J", family = "Boehm", role = c("aut", "cre"), email = "frederick.boehm@gmail.com", comment = c(ORCID = "0000-0002-1644-5931"))
Maintainer: Frederick J Boehm <frederick.boehm@gmail.com>
Description: We implement an adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
BugReports: https://github.com/fboehm/qtl2pleio/issues
Depends: R (>= 3.1)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, stringr, tibble, parallel, Matrix
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools, qtl2
LinkingTo: Rcpp, testthat, RcppEigen
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: yes
RoxygenNote: 6.1.1
Additional_repositories: https://rqtl.org/qtl2cran
Packaged: 2019-11-01 20:17:32 UTC; fjboehm
Author: Frederick J Boehm [aut, cre] (<https://orcid.org/0000-0002-1644-5931>)
Repository: CRAN
Date/Publication: 2019-11-05 15:50:02 UTC

More information about qtl2pleio at CRAN
Permanent link

New package presentes with initial version 0.1.0
Package: presentes
Title: Registry of Victims of State Terrorism in Argentina
Version: 0.1.0
Authors@R: c(person(given = "Diego", family = "Kozlowski", role = c("aut", "cre"), email = "diegokoz92@gmail.com", comment = c(ORCID = "0000-0002-5396-3471")), person(given = "Demian", family = "Zayat", role = "aut", email = "demian.zayat@gmail.com"), person(given = "H. Antonio", family = "Vazquez Brust", role = "aut", email = "avazquez@gmail.com"))
Description: Compilation and digitalization of the official registry of victims of state terrorism in Argentina during the last military coup. The original data comes from RUVTE-ILID (2019) <https://www.argentina.gob.ar/sitiosdememoria/ruvte/informe> and <http://basededatos.parquedelamemoria.org.ar/registros/>. The title, presentes, comes from present in spanish.
BugReports: https://github.com/DiegoKoz/presentes/issues
URL: https://diegokoz.github.io/presentes/
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
Encoding: UTF-8
Language: es
LazyData: true
RoxygenNote: 6.1.1
Suggests: testthat (>= 2.1.0), covr, knitr, rmarkdown
NeedsCompilation: no
Packaged: 2019-11-05 11:51:29 UTC; diego
Author: Diego Kozlowski [aut, cre] (<https://orcid.org/0000-0002-5396-3471>), Demian Zayat [aut], H. Antonio Vazquez Brust [aut]
Maintainer: Diego Kozlowski <diegokoz92@gmail.com>
Repository: CRAN
Date/Publication: 2019-11-05 15:10:06 UTC

More information about presentes at CRAN
Permanent link

New package MNLpred with initial version 0.0.1
Package: MNLpred
Title: Simulated Predicted Probabilities for Multinomial Logit Models
Version: 0.0.1
Authors@R: person(given = "Manuel", family = "Neumann", role = c("aut", "cre"), email = "manuel.neumann@mzes.uni-mannheim.de")
Description: Functions to easily return simulated predicted probabilities and first differences for multinomial logit models. It takes a specified scenario and a multinomial model to predict probabilities with a set of coefficients, drawn from a simulated sampling distribution. The simulated predictions allow for meaningful plots with means and confidence intervals. The methodological approach is based on the principles laid out by King, Tomz, and Wittenberg (2000) <doi:10.2307/2669316>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, testthat, foreign, nnet, magrittr, ggplot2, scales
VignetteBuilder: knitr
Imports: MASS, stats, tibble
NeedsCompilation: no
Packaged: 2019-11-04 09:36:03 UTC; manuneum
Author: Manuel Neumann [aut, cre]
Maintainer: Manuel Neumann <manuel.neumann@mzes.uni-mannheim.de>
Repository: CRAN
Date/Publication: 2019-11-05 15:20:09 UTC

More information about MNLpred at CRAN
Permanent link

New package hereR with initial version 0.1.0
Package: hereR
Type: Package
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Version: 0.1.0
Authors@R: c( person("Merlin", "Unterfinger", email = "info@munterfinger.ch", role = c("aut", "cre")))
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
URL: https://munterfinger.github.io/hereR/, https://github.com/munterfinger/hereR/
BugReports: https://github.com/munterfinger/hereR/issues/
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>: (1) geocode addresses using the 'Geocoder' API; (2) routing directions, travel distance or time matrices and isolines using the 'Routing' API; (3) traffic flow and incident information from the 'Traffic' API; (4) weather forecasts, reports on current weather conditions, astronomical information and alerts at a specific location from the 'Destination Weather' API. Locations, routes and isolines are returned as 'sf' objects.
Depends: R (>= 3.5.0)
Imports: curl (>= 4.2), data.table (>= 1.12.6), jsonlite (>= 1.6), lwgeom (>= 0.1-7), sf (>= 0.8-0), stringr (>= 1.4.0)
Suggests: ggplot2 (>= 3.2.1), leafpop (>= 0.0.1), mapview (>= 2.7.0), testthat (>= 2.2.1), knitr (>= 1.25), rmarkdown (>= 1.16), covr (>= 3.3.2)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-11-04 18:14:43 UTC; Merlin
Author: Merlin Unterfinger [aut, cre]
Repository: CRAN
Date/Publication: 2019-11-05 15:20:02 UTC

More information about hereR at CRAN
Permanent link

New package envoutliers with initial version 1.0.0
Package: envoutliers
Type: Package
Title: Methods for Identification of Outliers in Environmental Data
Version: 1.0.0
Authors@R: c( person("Martina", "Campulova", email = "martina.campulova@mendelu.cz", role = c("cre")), person("Martina", "Campulova", email = "martina.campulova@mendelu.cz", role = c("aut")), person("Roman", "Campula", email = "roman.campula@cdv.cz", role = c("ctb")))
Description: Three semi-parametric methods for detection of outliers in environmental data based on kernel regression and subsequent analysis of smoothing residuals. The first method (Campulova, Michalek, Mikuska and Bokal (2018) <DOI: 10.1002/cem.2997>) analyzes the residuals using changepoint analysis, the second method is based on control charts (Campulova, Veselik and Michalek (2017) <DOI: 10.1016/j.apr.2017.01.004>) and the third method (Holesovsky, Campulova and Michalek (2018) <DOI: 10.1016/j.apr.2017.06.005>) analyzes the residuals using extreme value theory (Holesovsky, Campulova and Michalek (2018) <DOI: 10.1016/j.apr.2017.06.005>).
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: MASS, car, changepoint, ecp, graphics, ismev, lokern, robustbase, stats
Suggests: openair
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-11-04 20:31:09 UTC; roman
Author: Martina Campulova [cre], Martina Campulova [aut], Roman Campula [ctb]
Maintainer: Martina Campulova <martina.campulova@mendelu.cz>
Repository: CRAN
Date/Publication: 2019-11-05 15:20:06 UTC

More information about envoutliers at CRAN
Permanent link

New package cleaner with initial version 1.2.0
Package: cleaner
Title: Fast and Easy Data Cleaning
Version: 1.2.0
Date: 2019-11-04
Authors@R: person( given = c("Matthijs", "S."), family = "Berends", email = "m.s.berends@umcg.nl", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7620-1800"))
Description: Data cleaning functions for classes logical, factor, numeric, character, currency and Date to make data cleaning fast and easy. Relying on very few dependencies, it provides smart guessing, but with user options to override anything if needed.
Depends: R (>= 3.0.0)
Imports: crayon, knitr, pillar, rlang (>= 0.3.1)
Suggests: rmarkdown, testthat (>= 1.0.2)
URL: https://github.com/msberends/cleaner
BugReports: https://github.com/msberends/cleaner/issues
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-11-04 18:54:37 UTC; msberends
Author: Matthijs S. Berends [aut, cre] (<https://orcid.org/0000-0001-7620-1800>)
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Repository: CRAN
Date/Publication: 2019-11-05 15:10:09 UTC

More information about cleaner at CRAN
Permanent link

New package gravitas with initial version 0.1.0
Package: gravitas
Type: Package
Title: Explore Probability Distributions for Bivariate Temporal Granularities
Version: 0.1.0
Authors@R: c(person(given = "Sayani", family = "Gupta", role = c("aut", "cre"), email = "gupta.sayani@gmail.com", comment = c(ORCID = "0000-0003-0643-5358")), person(given = "Rob", family = "Hyndman", role = c("aut", "ths"), email="Rob.Hyndman@monash.edu", comment = c(ORCID = "0000-0002-2140-5352")), person(given = "Di", family = "Cook", role = c("aut", "ths"), email = "dicook@monash.edu", comment = c(ORCID = "0000-0002-3813-7155")), person(given = "Antony", family = "Unwin", role = "aut", email = " unwin@math.uni-augsburg.de", comment = c(ORCID = "0000-0002-5841-5757")))
Depends: R(>= 3.1.3)
Imports: lubridate(>= 1.7.4), dplyr(>= 0.8.0), tsibble (>= 0.8.0), tibble(>= 2.1.1), rlang(>= 0.3.4), tidyr(>= 0.8.3), ggplot2 (>= 3.1.1), stats, stringr(>= 1.4.0), lvplot, ggridges, shiny, RColorBrewer, ineq, magrittr, utils
Suggests: tsibbledata (>= 0.1.0), purrr (>= 0.3.2), testthat (>= 2.1.0), covr, knitr, shinythemes, shinyalert, rmarkdown, readr
VignetteBuilder: knitr
Maintainer: Sayani Gupta <gupta.sayani@gmail.com>
Description: Provides tools for systematically exploring large quantities of temporal data across different temporal granularities (deconstructions of time) by visualizing probability distributions. 'gravitas' computes circular, aperiodic, single-order-up or multiple-order-up granularities and advises on which combinations of granularities to explore and through which distribution plots.
BugReports: https://github.com/Sayani07/gravitas/issues
License: GPL-3
URL: https://github.com/Sayani07/gravitas/
Encoding: UTF-8
LazyData: true
ByteCompile: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-11-01 06:38:25 UTC; sgup0008
Author: Sayani Gupta [aut, cre] (<https://orcid.org/0000-0003-0643-5358>), Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>), Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>), Antony Unwin [aut] (<https://orcid.org/0000-0002-5841-5757>)
Repository: CRAN
Date/Publication: 2019-11-05 14:30:02 UTC

More information about gravitas at CRAN
Permanent link

New package bcdata with initial version 0.1.1
Package: bcdata
Title: Search and Retrieve Data from the BC Data Catalogue
Version: 0.1.1
Authors@R: c(person(given = "Andy", family = "Teucher", role = c("aut", "cre"), email = "andy.teucher@gov.bc.ca"), person(given = "Sam", family = "Albers", role = c("aut", "ctb"), email = "sam.albers@gov.bc.ca"), person(given = "Stephanie", family = "Hazlitt", role = c("aut", "ctb"), email = "stephanie.hazlitt@gov.bc.ca"), person(given = "Province of British Columbia", role = "cph"))
Description: Search, query, and download tabular and 'geospatial' data from the British Columbia Data Catalogue(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records based on keywords, data licence, sector, data format, and B.C. government organization. View metadata directly in R, download many data formats, and query 'geospatial' data available via the B.C. government Web Feature Service ('WFS') using 'dplyr' syntax.
License: Apache License (== 2.0)
URL: https://github.com/bcgov/bcdata
BugReports: https://github.com/bcgov/bcdata/issues
Imports: utils, methods, cli, crul (>= 0.7.4), dbplyr (>= 1.3.0), dplyr (>= 0.7), glue, jsonlite (>= 1.6), leaflet, leaflet.extras, purrr (>= 0.2), readr (>= 1.3), readxl, rlang (>= 0.3.1), sf (>= 0.7), xml2
Suggests: knitr, rmarkdown, ggplot2, testthat, covr
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-11-01 05:22:08 UTC; ateucher
Author: Andy Teucher [aut, cre], Sam Albers [aut, ctb], Stephanie Hazlitt [aut, ctb], Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Repository: CRAN
Date/Publication: 2019-11-05 14:10:02 UTC

More information about bcdata at CRAN
Permanent link

Package abcrf updated to version 1.8.1 with previous version 1.8 dated 2019-06-14

Title: Approximate Bayesian Computation via Random Forests
Description: Performs Approximate Bayesian Computation (ABC) model choice and parameter inference via random forests. Pudlo P., Marin J.-M., Estoup A., Cornuet J.-M., Gautier M. and Robert C. P. (2016) <doi:10.1093/bioinformatics/btv684>. Estoup A., Raynal L., Verdu P. and Marin J.-M. <http://journal-sfds.fr/article/view/709>. Raynal L., Marin J.-M., Pudlo P., Ribatet M., Robert C. P. and Estoup A. (2019) <doi:10.1093/bioinformatics/bty867>.
Author: Jean-Michel Marin [aut, cre], Louis Raynal [aut], Pierre Pudlo [aut], Christian P. Robert [ctb], Arnaud Estoup [ctb]
Maintainer: Jean-Michel Marin <jean-michel.marin@umontpellier.fr>

Diff between abcrf versions 1.8 dated 2019-06-14 and 1.8.1 dated 2019-11-05

 DESCRIPTION     |    8 +++----
 MD5             |    6 ++---
 R/RcppExports.R |   62 ++++++++++++++++++++++++++++----------------------------
 R/densityPlot.R |    6 ++---
 4 files changed, 41 insertions(+), 41 deletions(-)

More information about abcrf at CRAN
Permanent link

Package rlfsm updated to version 1.0.0 with previous version 0.3.1 dated 2019-08-06

Title: Simulations and Statistical Inference for Linear Fractional Stable Motions
Description: Contains functions for simulating linear fractional stable motions, according to techniques developed by Stoev and Taqqu (2004) <doi:10.1142/S0218348X04002379>, as well as functions for computing important statistics used with these processes introduced by Mazur, Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different quantities related to those statistics.
Author: Dmitry Otryakhin [aut, cre], Stepan Mazur [aut], Mathias Ljungdahl [ctb]
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>

Diff between rlfsm versions 0.3.1 dated 2019-08-06 and 1.0.0 dated 2019-11-05

 rlfsm-0.3.1/rlfsm/man/CLT.Rd                                    |only
 rlfsm-1.0.0/rlfsm/DESCRIPTION                                   |    8 
 rlfsm-1.0.0/rlfsm/MD5                                           |   41 +
 rlfsm-1.0.0/rlfsm/NAMESPACE                                     |    1 
 rlfsm-1.0.0/rlfsm/NEWS.md                                       |   14 
 rlfsm-1.0.0/rlfsm/R/CLT.R                                       |  212 +++-------
 rlfsm-1.0.0/rlfsm/R/MC.R                                        |only
 rlfsm-1.0.0/rlfsm/R/PLot_bias_and_variance_of_an_estimate.r     |   39 +
 rlfsm-1.0.0/rlfsm/R/Plot_function_for_empirical_distributions.R |   34 -
 rlfsm-1.0.0/rlfsm/R/functions_for_estimates.r                   |   22 -
 rlfsm-1.0.0/rlfsm/R/sample_path_generator.r                     |  114 ++---
 rlfsm-1.0.0/rlfsm/build/partial.rdb                             |binary
 rlfsm-1.0.0/rlfsm/man/MCestimLFSM.Rd                            |only
 rlfsm-1.0.0/rlfsm/man/Plot_dens.Rd                              |   10 
 rlfsm-1.0.0/rlfsm/man/Plot_vb.Rd                                |   16 
 rlfsm-1.0.0/rlfsm/man/path.Rd                                   |    2 
 rlfsm-1.0.0/rlfsm/man/paths.Rd                                  |    2 
 rlfsm-1.0.0/rlfsm/man/rlfsm-deprecated.Rd                       |only
 rlfsm-1.0.0/rlfsm/man/sf.Rd                                     |    2 
 rlfsm-1.0.0/rlfsm/tests/testthat/test_graphics.R                |only
 rlfsm-1.0.0/rlfsm/tests/testthat/test_increms.R                 |    2 
 rlfsm-1.0.0/rlfsm/tests/testthat/test_path_gens.R               |   43 +-
 rlfsm-1.0.0/rlfsm/tests/testthat/test_sf.R                      |    2 
 rlfsm-1.0.0/rlfsm/tests/testthat/test_stats.R                   |    2 
 24 files changed, 276 insertions(+), 290 deletions(-)

More information about rlfsm at CRAN
Permanent link

Package bpnreg updated to version 1.0.1 with previous version 1.0.0 dated 2018-02-27

Title: Bayesian Projected Normal Regression Models for Circular Data
Description: Fitting Bayesian multiple and mixed-effect regression models for circular data based on the projected normal distribution. Both continuous and categorical predictors can be included. Sampling from the posterior is performed via an MCMC algorithm. Posterior descriptives of all parameters, model fit statistics and Bayes factors for hypothesis tests for inequality constrained hypotheses are provided. See Cremers, Mulder & Klugkist (2018) <doi:10.1111/bmsp.12108> and Nuñez-Antonio & Guttiérez-Peña (2014) <doi:10.1016/j.csda.2012.07.025>.
Author: Jolien Cremers [aut, cre]
Maintainer: Jolien Cremers <joliencremers@gmail.com>

Diff between bpnreg versions 1.0.0 dated 2018-02-27 and 1.0.1 dated 2019-11-05

 DESCRIPTION               |   18 +++----
 MD5                       |  104 +++++++++++++++++++++++-----------------------
 NEWS.md                   |   24 ++++++++++
 R/RcppExports.R           |   28 ++++++++++++
 R/bpnreg.R                |   10 ++--
 R/classfunctions.R        |    2 
 R/lme4code.R              |   24 +++++-----
 R/mcmc.R                  |   18 +++++++
 R/regression.R            |   92 +++++++++++++++++++++++-----------------
 R/utils.R                 |   89 +++++++++++++++++++++++++++++++++++----
 README.md                 |   73 ++++++++++++++++++--------------
 man/DIC_reg.Rd            |    1 
 man/Dbd.Rd                |    1 
 man/Omega.f.Rd            |    1 
 man/RHSForm-set.Rd        |    1 
 man/RHSForm.Rd            |    1 
 man/anyBars.Rd            |    1 
 man/b.f.Rd                |    1 
 man/betaBlock.fRI.Rd      |    1 
 man/betaBlock.fRS.Rd      |    1 
 man/bpnme.Rd              |   36 ++++++++-------
 man/bpnr.Rd               |   30 +++++++------
 man/bpnreg.Rd             |   10 ++--
 man/cat_check.Rd          |    1 
 man/circ_coef_rcpp.Rd     |    1 
 man/coef_circ.bpnme.Rd    |    3 -
 man/coef_circ.bpnr.Rd     |    3 -
 man/eigen_val.Rd          |    1 
 man/eigen_vec.Rd          |    1 
 man/expandDoubleVerts.Rd  |    1 
 man/findbars.Rd           |    1 
 man/hmode.Rd              |    1 
 man/hmodeC.Rd             |    1 
 man/hmodeci.Rd            |    1 
 man/hmodeciC.Rd           |    1 
 man/isAnyArgBar.Rd        |    1 
 man/isBar.Rd              |    1 
 man/lik.Rd                |    1 
 man/mvrnorm_arma_eigen.Rd |    1 
 man/nobars.Rd             |    1 
 man/nobars_.Rd            |    1 
 man/pnr.Rd                |    1 
 man/reOnly.Rd             |    1 
 man/rho.Rd                |    1 
 man/safeDeparse.Rd        |    1 
 man/slice_r_me.Rd         |    1 
 man/slice_rcpp.Rd         |    1 
 man/subbars.Rd            |    1 
 man/summe.Rd              |    1 
 man/sumr.Rd               |    1 
 man/theta_bar.Rd          |    1 
 src/Makevars              |    7 +--
 src/Makevars.win          |    7 +--
 53 files changed, 413 insertions(+), 200 deletions(-)

More information about bpnreg at CRAN
Permanent link

Package processcheckR updated to version 0.1.2 with previous version 0.1.0 dated 2018-10-08

Title: Rule-Based Conformance Checking of Business Process Event Data
Description: Check compliance of event-data from (business) processes with respect to specified rules. Rules supported are of three types: frequency (activities that should (not) happen x number of times), order (succession between activities) and exclusiveness (and and exclusive choice between activities).
Author: Gert Janssenswillen [aut, cre]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>

Diff between processcheckR versions 0.1.0 dated 2018-10-08 and 0.1.2 dated 2019-11-05

 DESCRIPTION                 |   14 -
 MD5                         |   48 ++---
 NAMESPACE                   |    2 
 R/absent.R                  |   18 -
 R/check_rule.R              |    3 
 R/check_rules.R             |only
 R/contains_between.R        |    4 
 R/filter_rules.R            |only
 README.md                   |    8 
 build/vignette.rds          |binary
 inst/doc/processcheckr.Rmd  |    5 
 inst/doc/processcheckr.html |  415 +++++++++++++++++++++++++++++++++++---------
 man/absent.Rd               |    7 
 man/and.Rd                  |    1 
 man/check_rules.Rd          |only
 man/contains.Rd             |    1 
 man/contains_between.Rd     |    1 
 man/contains_exactly.Rd     |    1 
 man/ends.Rd                 |    1 
 man/filter_rules.Rd         |only
 man/precedence.Rd           |    1 
 man/responded_existence.Rd  |    1 
 man/response.Rd             |    1 
 man/starts.Rd               |    1 
 man/succession.Rd           |    1 
 man/xor.Rd                  |    1 
 vignettes/processcheckr.Rmd |    5 
 27 files changed, 415 insertions(+), 125 deletions(-)

More information about processcheckR at CRAN
Permanent link

Package UniprotR updated to version 1.1.0 with previous version 1.0.3 dated 2019-08-19

Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information.
Author: Mohamed Soudy [aut, cre], Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>

Diff between UniprotR versions 1.0.3 dated 2019-08-19 and 1.1.0 dated 2019-11-05

 UniprotR-1.0.3/UniprotR/R/GetPTM_Processsing.R     |only
 UniprotR-1.0.3/UniprotR/R/PlotSummaryInfo.R        |only
 UniprotR-1.0.3/UniprotR/man/GetPTM_Processsing.Rd  |only
 UniprotR-1.0.3/UniprotR/man/PlotSummaryInfo.Rd     |only
 UniprotR-1.1.0/UniprotR/DESCRIPTION                |   18 +++---
 UniprotR-1.1.0/UniprotR/MD5                        |   59 +++++++++++++--------
 UniprotR-1.1.0/UniprotR/NAMESPACE                  |   28 ++++++++-
 UniprotR-1.1.0/UniprotR/R/ConstructGenesTree.R     |only
 UniprotR-1.1.0/UniprotR/R/ConstructLocTree.R       |    9 +--
 UniprotR-1.1.0/UniprotR/R/ConstructPhylogeny.R     |only
 UniprotR-1.1.0/UniprotR/R/GetPTM_Processing.R      |only
 UniprotR-1.1.0/UniprotR/R/GetPathology_Biotech.R   |    2 
 UniprotR-1.1.0/UniprotR/R/GetProteoAnnotator.R     |    3 -
 UniprotR-1.1.0/UniprotR/R/GetSequences.R           |    1 
 UniprotR-1.1.0/UniprotR/R/GetpdbStructure.R        |    2 
 UniprotR-1.1.0/UniprotR/R/PlotChromosomeInfo.R     |only
 UniprotR-1.1.0/UniprotR/R/PlotGoInfo.R             |only
 UniprotR-1.1.0/UniprotR/R/PlotPhyscochemical.R     |only
 UniprotR-1.1.0/UniprotR/R/PlotProteinTaxa.R        |    9 +--
 UniprotR-1.1.0/UniprotR/R/PlotproteinExist.R       |only
 UniprotR-1.1.0/UniprotR/R/PlotproteinScore.R       |only
 UniprotR-1.1.0/UniprotR/R/PlotproteinStatus.R      |only
 UniprotR-1.1.0/UniprotR/R/ProcessAcc.R             |only
 UniprotR-1.1.0/UniprotR/R/UniprotR.r               |   12 +++-
 UniprotR-1.1.0/UniprotR/R/plotGoannotation.R       |only
 UniprotR-1.1.0/UniprotR/R/plot_GO.R                |   29 +++++++---
 UniprotR-1.1.0/UniprotR/man/ConstructGenesTree.Rd  |only
 UniprotR-1.1.0/UniprotR/man/ConstructLocTree.Rd    |    2 
 UniprotR-1.1.0/UniprotR/man/ConstructPhylogeny.Rd  |only
 UniprotR-1.1.0/UniprotR/man/GetPTM_Processing.Rd   |only
 UniprotR-1.1.0/UniprotR/man/Goparse.Rd             |only
 UniprotR-1.1.0/UniprotR/man/PlotChromosomeInfo.Rd  |only
 UniprotR-1.1.0/UniprotR/man/PlotGoInfo.Rd          |only
 UniprotR-1.1.0/UniprotR/man/PlotPhysicochemical.Rd |only
 UniprotR-1.1.0/UniprotR/man/PlotProteinGO_bio.Rd   |    2 
 UniprotR-1.1.0/UniprotR/man/PlotProteinGO_cel.Rd   |    2 
 UniprotR-1.1.0/UniprotR/man/PlotProteinGO_molc.Rd  |    2 
 UniprotR-1.1.0/UniprotR/man/PlotProteinTaxa.Rd     |    2 
 UniprotR-1.1.0/UniprotR/man/PlotproteinExist.Rd    |only
 UniprotR-1.1.0/UniprotR/man/PlotproteinScore.Rd    |only
 UniprotR-1.1.0/UniprotR/man/PlotproteinStatus.Rd   |only
 UniprotR-1.1.0/UniprotR/man/ProcessAcc.Rd          |only
 UniprotR-1.1.0/UniprotR/man/UniprotR.Rd            |   12 +++-
 UniprotR-1.1.0/UniprotR/man/plotGoannotation.Rd    |only
 44 files changed, 134 insertions(+), 60 deletions(-)

More information about UniprotR at CRAN
Permanent link

New package passt with initial version 0.1.0
Package: passt
Type: Package
Title: Probability Associator Time (PASS-T)
Version: 0.1.0
Authors@R: person("Johannes", "Titz", email = "johannes.titz@gmail.com", role = c("aut", "cre"))
Description: Simulates judgments of frequency and duration based on the Probability Associator Time (PASS-T) model. PASS-T is a memory model based on a simple competitive artificial neural network. It can imitate human judgments of frequency and duration, which have been extensively studied in cognitive psychology (e.g. Hintzman (1970) <doi:10.1037/h0028865>, Betsch et al. (2010) <https://psycnet.apa.org/record/2010-18204-003>). The PASS-T model is an extension of the PASS model (Sedlmeier, 2002, ISBN:0198508638). The package provides an easy way to run simulations, which can then be compared with empirical data in human judgments of frequency and duration.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
URL: https://github.com/johannes-titz/passt
BugReports: https://github.com/johannes-titz/passt/issues
Suggests: knitr, ggplot2, plyr, testthat (>= 2.1.0), covr
VignetteBuilder: knitr
Imports: magrittr,dplyr,tidyr,rlang
NeedsCompilation: no
Packaged: 2019-11-01 09:17:10 UTC; jt
Author: Johannes Titz [aut, cre]
Maintainer: Johannes Titz <johannes.titz@gmail.com>
Repository: CRAN
Date/Publication: 2019-11-05 10:00:02 UTC

More information about passt at CRAN
Permanent link

New package hilbertSimilarity with initial version 0.4.2
Package: hilbertSimilarity
Type: Package
Title: Hilbert Similarity Index for High Dimensional Data
Version: 0.4.2
Date: 2019-10-29
Authors@R: c(person('Yann','Abraham',email='yann.abraham@gmail.com',role=c('aut','cre')), person('Marilisa','Neri',email='marilisa.neri@gmail.com',role='aut'), person('John','Skilling',role='ctb'))
Description: Quantifying similarity between high-dimensional single cell samples is challenging, and usually requires some simplifying hypothesis to be made. By transforming the high dimensional space into a high dimensional grid, the number of cells in each sub-space of the grid is characteristic of a given sample. Using a Hilbert curve each sample can be visualized as a simple density plot, and the distance between samples can be calculated from the distribution of cells using the Jensen-Shannon distance. Bins that correspond to significant differences between samples can identified using a simple bootstrap procedure.
LinkingTo: Rcpp
Imports: Rcpp, entropy
Suggests: knitr, rmarkdown, ggplot2, dplyr, tidyr, reshape2, bodenmiller, abind
License: CC BY-NC-SA 4.0
LazyData: TRUE
Encoding: UTF-8
URL: http://github.com/yannabraham/hilbertSimilarity
BugReports: http://github.com/yannabraham/hilbertSimilarity/issues
VignetteBuilder: knitr
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-11-04 18:03:25 UTC; ayann
Author: Yann Abraham [aut, cre], Marilisa Neri [aut], John Skilling [ctb]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
Repository: CRAN
Date/Publication: 2019-11-05 09:40:02 UTC

More information about hilbertSimilarity at CRAN
Permanent link

New package designr with initial version 0.1.8
Package: designr
Type: Package
Title: Balanced Factorial Designs
Version: 0.1.8
Date: 2019-10-30
URL: https://maxrabe.com/designr
BugReports: https://github.com/mmrabe/designr/issues
Authors@R: c(person("Maximilian", "Rabe", email = "maximilian.rabe@uni-potsdam.de", role = c("aut", "cre")), person("Reinhold", "Kliegl", email = "kliegl@uni-potsdam.de", role = c("aut")), person("Schad", "Daniel", email = "schad@uni-potsdam.de", role = c("aut")))
Description: Generate balanced factorial designs with crossed and nested random and fixed effects <https://github.com/mmrabe/designr>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: MASS, tibble, crossdes, methods, dplyr
Suggests: knitr, rmarkdown, tidyverse, jsonlite, writexl
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-10-30 21:41:47 UTC; max
Author: Maximilian Rabe [aut, cre], Reinhold Kliegl [aut], Schad Daniel [aut]
Maintainer: Maximilian Rabe <maximilian.rabe@uni-potsdam.de>
Repository: CRAN
Date/Publication: 2019-11-05 09:20:02 UTC

More information about designr at CRAN
Permanent link

Package mlr3measures updated to version 0.1.1 with previous version 0.1.0 dated 2019-10-28

Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised learning. Includes over 40 measures for regression and classification. Additionally, meta information about the performance measures can be queried, e.g. what the best and worst possible performances scores are.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>

Diff between mlr3measures versions 0.1.0 dated 2019-10-28 and 0.1.1 dated 2019-11-05

 DESCRIPTION                   |   22 ++---
 MD5                           |  162 +++++++++++++++++++++---------------------
 NAMESPACE                     |    1 
 NEWS.md                       |    6 +
 R/binary_auc.R                |    2 
 R/binary_dor.R                |    2 
 R/binary_fbeta.R              |    4 -
 R/binary_fdr.R                |    2 
 R/binary_fn.R                 |    2 
 R/binary_fnr.R                |    2 
 R/binary_fomr.R               |    2 
 R/binary_fp.R                 |    2 
 R/binary_fpr.R                |    2 
 R/binary_mcc.R                |    2 
 R/binary_npv.R                |    2 
 R/binary_ppv.R                |    4 -
 R/binary_tn.R                 |    2 
 R/binary_tnr.R                |    4 -
 R/binary_tp.R                 |    2 
 R/binary_tpr.R                |    6 -
 R/classif_acc.R               |    2 
 R/classif_bacc.R              |only
 R/classif_ce.R                |    2 
 R/classif_logloss.R           |    6 -
 R/helper.R                    |    2 
 R/measures.R                  |    6 -
 R/regr_bias.R                 |    2 
 R/regr_ktau.R                 |    2 
 R/regr_mae.R                  |    2 
 R/regr_mape.R                 |    2 
 R/regr_maxae.R                |    4 -
 R/regr_maxse.R                |    2 
 R/regr_medae.R                |    2 
 R/regr_medse.R                |    2 
 R/regr_mse.R                  |    2 
 R/regr_msle.R                 |    2 
 R/regr_pbias.R                |    2 
 R/regr_rae.R                  |    2 
 R/regr_rmse.R                 |    2 
 R/regr_rmsle.R                |    2 
 R/regr_rrse.R                 |    2 
 R/regr_rse.R                  |    2 
 R/regr_rsq.R                  |    2 
 R/regr_sae.R                  |    2 
 R/regr_smape.R                |    4 -
 R/regr_srho.R                 |    2 
 R/regr_sse.R                  |    2 
 R/roxygen.R                   |    8 +-
 R/zzz.R                       |    2 
 README.md                     |    3 
 build/partial.rdb             |binary
 inst/references.bib           |  132 ++++++++++++++++++----------------
 man/acc.Rd                    |    4 -
 man/auc.Rd                    |    2 
 man/bacc.Rd                   |only
 man/binary_params.Rd          |    4 -
 man/ce.Rd                     |    2 
 man/classif_params.Rd         |    5 +
 man/confusion_matrix.Rd       |    4 -
 man/dor.Rd                    |    4 -
 man/fbeta.Rd                  |    6 -
 man/fdr.Rd                    |    4 -
 man/fn.Rd                     |    4 -
 man/fnr.Rd                    |    4 -
 man/fomr.Rd                   |    4 -
 man/fp.Rd                     |    4 -
 man/fpr.Rd                    |    4 -
 man/logloss.Rd                |    6 -
 man/maxae.Rd                  |    2 
 man/mcc.Rd                    |    4 -
 man/measures.Rd               |    2 
 man/mlr3measures-package.Rd   |    9 +-
 man/npv.Rd                    |    4 -
 man/ppv.Rd                    |    4 -
 man/smape.Rd                  |    2 
 man/tn.Rd                     |    4 -
 man/tnr.Rd                    |    4 -
 man/tp.Rd                     |    4 -
 man/tpr.Rd                    |    4 -
 tests/testthat/helper.R       |    7 -
 tests/testthat/test_binary.R  |   40 +++++++++-
 tests/testthat/test_classif.R |   28 ++++++-
 tests/testthat/test_regr.R    |    6 -
 83 files changed, 353 insertions(+), 274 deletions(-)

More information about mlr3measures at CRAN
Permanent link

Package VWPre updated to version 1.2.1 with previous version 1.2.0 dated 2019-07-09

Title: Tools for Preprocessing Visual World Data
Description: Gaze data from the Visual World Paradigm requires significant preprocessing prior to plotting and analyzing the data. This package provides functions for preparing visual world eye-tracking data for statistical analysis and plotting. It can prepare data for linear analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM). Additionally, it contains various plotting functions for creating grand average and conditional average plots. See the vignette for samples of the functionality. Currently, the functions in this package are designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer. While we would like to add functionality for data collected with other systems in the future, the current package is considered to be feature-complete; further updates will mainly entail maintenance and the addition of minor functionality.
Author: Vincent Porretta [aut, cre], Aki-Juhani Kyröläinen [aut], Jacolien van Rij [ctb], Juhani Järvikivi [ctb]
Maintainer: Vincent Porretta <vincentporretta@gmail.com>

Diff between VWPre versions 1.2.0 dated 2019-07-09 and 1.2.1 dated 2019-11-05

 VWPre-1.2.0/VWPre/LICENSE                                 |only
 VWPre-1.2.1/VWPre/DESCRIPTION                             |   10 
 VWPre-1.2.1/VWPre/MD5                                     |   27 
 VWPre-1.2.1/VWPre/R/calculations.R                        |    4 
 VWPre-1.2.1/VWPre/R/checking.R                            | 1282 +++++++-------
 VWPre-1.2.1/VWPre/R/formatting.R                          |   38 
 VWPre-1.2.1/VWPre/R/interactive.R                         | 1160 ++++++------
 VWPre-1.2.1/VWPre/R/plotting.R                            |   96 -
 VWPre-1.2.1/VWPre/R/trackloss.R                           |   10 
 VWPre-1.2.1/VWPre/build/vignette.rds                      |binary
 VWPre-1.2.1/VWPre/inst/NEWS                               |   30 
 VWPre-1.2.1/VWPre/inst/doc/VWPre_Basic_Preprocessing.html |  104 -
 VWPre-1.2.1/VWPre/inst/doc/VWPre_Interest_Areas.html      |   92 -
 VWPre-1.2.1/VWPre/inst/doc/VWPre_Message_Alignment.html   |   50 
 VWPre-1.2.1/VWPre/inst/doc/VWPre_Plotting.html            |  298 +--
 15 files changed, 1627 insertions(+), 1574 deletions(-)

More information about VWPre at CRAN
Permanent link

Package vegdata updated to version 0.9.7 with previous version 0.9.5 dated 2018-10-24

Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources ( Turboveg <http://www.synbiosys.alterra.nl/turboveg/>; the German national repository <http://www.vegetweb.de> and others. Taxonomic harmonization (given appropriate taxonomic lists, e.g. the German taxonomic standard list "GermanSL", <http://germansl.infinitenature.org>).
Author: Florian Jansen <florian.jansen@uni-rostock.de>
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>

Diff between vegdata versions 0.9.5 dated 2018-10-24 and 0.9.7 dated 2019-11-05

 DESCRIPTION                          |   11 
 MD5                                  |   98 
 NAMESPACE                            |   15 
 R/internal.r                         |   23 
 R/isc.r                              |   17 
 R/reShape.veg.r                      |    9 
 R/syntab.r                           |    6 
 R/tax.child.r                        |    5 
 R/tax.names.r                        |  101 
 R/tax.r                              |    2 
 R/tax.reflist.r                      |   43 
 R/taxval.r                           |   33 
 R/tv.biblio.r                        |only
 R/tv.compRefl.r                      |   23 
 R/tv.coverperc.r                     |    4 
 R/tv.home.r                          |   82 
 R/tv.readXML.r                       |  131 
 R/tv.site.r                          |   11 
 R/tv.traits.r                        |    2 
 R/tv.veg.r                           |    5 
 R/tv.write.r                         |   24 
 R/zzz.r                              |    7 
 build/vignette.rds                   |binary
 data/taxlevels.csv.gz                |only
 inst/ChangeLog                       |    7 
 inst/doc/vegdata.R                   |   36 
 inst/doc/vegdata.Rnw                 |   64 
 inst/doc/vegdata.pdf                 |binary
 inst/tvdata/Data/elbaue-esveg.xml    |only
 inst/tvdata/Data/elbaue.xml          | 5531 ++++++++++++-----------------------
 inst/tvdata/Data/elbaue/tvwin.dbf    |binary
 inst/tvdata/Data/taxatest/tvwin.dbf  |binary
 inst/tvdata/Data/warenkorb_leyer.xml |only
 man/elbaue.Rd                        |    3 
 man/lc.Rd                            |    3 
 man/monotypic.Rd                     |    6 
 man/syntab.Rd                        |    4 
 man/tax.Rd                           |   28 
 man/taxval.Rd                        |    3 
 man/tv.biblio.Rd                     |    5 
 man/tv.comprefl.Rd                   |    3 
 man/tv.coverperc.Rd                  |    7 
 man/tv.metadata.Rd                   |    5 
 man/tv.obs.Rd                        |    2 
 man/tv.readXML.Rd                    |    2 
 man/tv.site.Rd                       |    9 
 man/tv.traits.Rd                     |    6 
 man/tv.veg.Rd                        |    7 
 man/tv.write.Rd                      |    5 
 man/vegdata-internal.Rd              |    7 
 man/vegdata-package.Rd               |    9 
 vignettes/vegdata.Rnw                |   64 
 52 files changed, 2435 insertions(+), 4033 deletions(-)

More information about vegdata at CRAN
Permanent link

Package RSiteCatalyst updated to version 1.4.16 with previous version 1.4.15 dated 2018-04-21

Title: R Client for Adobe Analytics API V1.4
Description: Functions for interacting with the Adobe Analytics API V1.4 (<https://api.omniture.com/admin/1.4/rest/>).
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch <rzwitch+rsitecatalyst@gmail.com>

Diff between RSiteCatalyst versions 1.4.15 dated 2018-04-21 and 1.4.16 dated 2019-11-05

 DESCRIPTION                                           |   16 
 MD5                                                   |   74 +--
 R/QueueDataWarehouse.R                                |  364 +++++++++---------
 man/QueueDataWarehouse.Rd                             |  209 +++++-----
 tests/testthat/test-QueueSummary.R                    |   22 -
 tests/testthat/test-buildclassificationvaluesegment.R |   13 
 tests/testthat/test-buildrealtimereportstructure.R    |   19 
 tests/testthat/test-getactivation.R                   |   26 -
 tests/testthat/test-getaxlestartdate.R                |   26 -
 tests/testthat/test-getbasecurrency.R                 |   26 -
 tests/testthat/test-getbaseurl.R                      |   26 -
 tests/testthat/test-getcustomcalendar.R               |   26 -
 tests/testthat/test-getdefaultpage.R                  |   26 -
 tests/testthat/test-getdiscoverenabled.R              |   26 -
 tests/testthat/test-getfeed.R                         |   12 
 tests/testthat/test-getfunctions.R                    |   26 -
 tests/testthat/test-getgeosegmentation.R              |   26 -
 tests/testthat/test-getgroups.R                       |   26 -
 tests/testthat/test-getlocalization.R                 |   26 -
 tests/testthat/test-getlogin.R                        |   26 -
 tests/testthat/test-getlogins.R                       |   26 -
 tests/testthat/test-getmobileappreporting.R           |   26 -
 tests/testthat/test-getpreviousservercalls.R          |   34 -
 tests/testthat/test-getprivacysettings.R              |   36 -
 tests/testthat/test-getreport.R                       |   16 
 tests/testthat/test-getreportsbyids.R                 |   19 
 tests/testthat/test-getscheduledspike.R               |   26 -
 tests/testthat/test-gettimezone.R                     |   26 -
 tests/testthat/test-getversionaccess.R                |   26 -
 tests/testthat/test-getvideosettings.R                |   26 -
 tests/testthat/test-queuedatawarehouse.R              |   18 
 tests/testthat/test-queuefallout.R                    |   81 ++--
 tests/testthat/test-queueovertime.R                   |   60 +-
 tests/testthat/test-queuepathing.R                    |   38 -
 tests/testthat/test-queueranked.R                     |  102 ++---
 tests/testthat/test-queuetrended.R                    |  238 +++++------
 tests/testthat/test-saverealtimesettings.R            |   14 
 tests/testthat/test-submitjsonqueuereport.R           |   14 
 38 files changed, 953 insertions(+), 914 deletions(-)

More information about RSiteCatalyst at CRAN
Permanent link

Package ECoL updated to version 0.3.0 with previous version 0.2.0 dated 2019-02-26

Title: Complexity Measures for Supervised Problems
Description: Provides measures to characterize the complexity of classification and regression problems based on aspects that quantify the linearity of the data, the presence of informative feature, the sparsity and dimensionality of the datasets. This package provides bug fixes, generalizations and implementations of many state of the art measures. The measures are described in the papers: Lorena et al. (2019) <doi:10.1145/3347711> and Lorena et al. (2018) <doi:10.1007/s10994-017-5681-1>.
Author: Luis Garcia [aut, cre], Ana Lorena [aut, ctb]
Maintainer: Luis Garcia <lpfgarcia@icmc.usp.br>

Diff between ECoL versions 0.2.0 dated 2019-02-26 and 0.3.0 dated 2019-11-05

 ECoL-0.2.0/ECoL/README.md              |only
 ECoL-0.2.0/ECoL/man/linearity.class.Rd |only
 ECoL-0.2.0/ECoL/man/linearity.regr.Rd  |only
 ECoL-0.3.0/ECoL/DESCRIPTION            |   11 -
 ECoL-0.3.0/ECoL/MD5                    |   57 ++++----
 ECoL-0.3.0/ECoL/NAMESPACE              |   10 -
 ECoL-0.3.0/ECoL/R/balance.R            |    4 
 ECoL-0.3.0/ECoL/R/complexity.R         |   45 +++---
 ECoL-0.3.0/ECoL/R/correlation.R        |   40 +++--
 ECoL-0.3.0/ECoL/R/dimensionality.R     |    7 -
 ECoL-0.3.0/ECoL/R/internal.R           |    8 -
 ECoL-0.3.0/ECoL/R/linearity.R          |  231 +++++++++++++--------------------
 ECoL-0.3.0/ECoL/R/neighborhood.R       |   45 ++++--
 ECoL-0.3.0/ECoL/R/network.R            |   31 +++-
 ECoL-0.3.0/ECoL/R/overlapping.R        |   41 ++++-
 ECoL-0.3.0/ECoL/R/smoothness.R         |   42 ++++--
 ECoL-0.3.0/ECoL/R/summarization.R      |only
 ECoL-0.3.0/ECoL/man/balance.Rd         |   10 -
 ECoL-0.3.0/ECoL/man/complexity.Rd      |   22 +--
 ECoL-0.3.0/ECoL/man/correlation.Rd     |   22 +--
 ECoL-0.3.0/ECoL/man/dimensionality.Rd  |   12 -
 ECoL-0.3.0/ECoL/man/linearity.Rd       |only
 ECoL-0.3.0/ECoL/man/neighborhood.Rd    |   15 +-
 ECoL-0.3.0/ECoL/man/network.Rd         |   14 +-
 ECoL-0.3.0/ECoL/man/overlapping.Rd     |   15 +-
 ECoL-0.3.0/ECoL/man/smoothness.Rd      |   17 +-
 ECoL-0.3.0/ECoL/man/summarization.Rd   |only
 ECoL-0.3.0/ECoL/tests                  |only
 28 files changed, 387 insertions(+), 312 deletions(-)

More information about ECoL at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.