Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms of blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package.
Author: Fabien Llobell [aut, cre] (Oniris/XLSTAT),
Evelyne Vigneau [ctb] (Oniris),
Veronique Cariou [ctb] (Oniris),
El Mostafa Qannari [ctb] (Oniris)
Maintainer: Fabien Llobell <fabien.llobell@oniris-nantes.fr>
Diff between ClustBlock versions 2.0.0 dated 2019-07-08 and 2.1.0 dated 2019-11-06
DESCRIPTION | 10 ++--- MD5 | 59 ++++++++++++++++--------------- NAMESPACE | 1 NEWS | 8 ++-- R/choc.R | 2 - R/cluscata.R | 56 ++++++++++++++++++----------- R/cluscata_kmeans.R | 20 +++++++--- R/clustatis.R | 74 +++++++++++++++++++++++++-------------- R/clustatis_FreeSort.R | 13 ++++-- R/clustatis_FreeSort_kmeans.R |only R/clustatis_kmeans.R | 39 +++++++++++++------- R/consistency_cata.R | 2 - R/crit_cataXj.R | 30 ++++++--------- R/crit_statisWj.R | 28 +++++--------- R/plot.catatis.R | 2 - R/plot.cluscata.R | 2 - R/plot.clustatis.R | 2 - R/plot.statis.R | 2 - R/statis.R | 2 - inst |only man/choc.Rd | 2 - man/cluscata.Rd | 6 ++- man/cluscata_kmeans.Rd | 2 - man/clustatis.Rd | 9 +++- man/clustatis_FreeSort.Rd | 8 +++- man/clustatis_FreeSort_kmeans.Rd |only man/clustatis_kmeans.Rd | 6 +-- man/consistency_cata.Rd | 2 - man/plot.catatis.Rd | 2 - man/plot.cluscata.Rd | 2 - man/plot.clustatis.Rd | 2 - man/plot.statis.Rd | 2 - 32 files changed, 232 insertions(+), 163 deletions(-)
Title: Operationalizing Social Determinants of Health Data for
Researchers
Description: Accesses raw data via API and calculates social
determinants of health measures for user-specified locations in the
US, returning them in tidyverse- and sf-compatible data frames.
Author: Nik Krieger [aut, cre],
Jarrod Dalton [aut],
Cindy Wang [aut],
Adam Perzynski [aut],
National Institutes of Health/National Institute on Aging [fnd] (The
development of this software package was supported by a research
grant from the National Institutes of Health/National Institute on
Aging, (Principal Investigators: Jarrod E. Dalton, PhD and Adam T.
Perzynski, PhD; Grant Number: 5R01AG055480-02). All of its contents
are solely the responsibility of the authors and do not necessarily
represent the official views of the NIH.)
Maintainer: Nik Krieger <nk@case.edu>
Diff between sociome versions 1.2.0 dated 2019-09-16 and 1.3.0 dated 2019-11-06
DESCRIPTION | 18 - MD5 | 36 +- NAMESPACE | 4 NEWS.md | 9 R/calculate_adi.R | 50 +++ R/data_documentation.R | 33 +- R/get_adi.R | 67 +++-- R/get_geoids.R | 6 R/validation.R | 119 +++++---- data/acs_vars.rda |binary inst/extdata/census_variables_dataset_creator.Rmd | 277 +++++++++++----------- man/acs_vars.Rd | 31 +- man/calculate_adi.Rd | 11 man/get_adi.Rd | 27 +- man/get_geoids.Rd | 18 + tests/testthat/test_arg_tibble_acs.R | 103 ++++---- tests/testthat/test_arg_tibble_decennial1990.R | 39 +-- tests/testthat/test_arg_tibble_decennial2000.R | 27 +- tests/testthat/test_arg_tibble_decennial2010.R | 93 ++++--- 19 files changed, 547 insertions(+), 421 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [aut],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.3.9 dated 2019-10-04 and 0.4.0 dated 2019-11-06
DESCRIPTION | 6 +-- MD5 | 40 +++++++++++++++---------- NAMESPACE | 4 ++ NEWS.md | 24 +++++++++++++++ R/MazamaCoreUtils.R | 2 - R/dateSequence.R |only R/functionArgument_lintRules.R | 10 ++++-- R/loadDataFile.R |only R/parseDatetime.R | 51 +++++++++++++++++++++----------- R/stopIfNull.R | 2 - R/timeRange.R | 2 - R/timeStamp.R |only R/utils-flog.logger.R |only inst/doc/error-handling.html | 10 +++--- inst/doc/logging.html | 32 ++++++++++---------- man/MazamaCoreUtils.Rd | 2 - man/dateSequence.Rd |only man/flog.logger.Rd |only man/loadDataFile.Rd |only man/parseDatetime.Rd | 36 +++++++++++++++------- man/timeRange.Rd | 2 - man/timeStamp.Rd |only tests/testthat/test-dateSequence.R |only tests/testthat/test-initializeLogging.R | 1 tests/testthat/test-parseDatetime.R | 31 ++++++++++++++++++- tests/testthat/test-timeStamp.R |only 26 files changed, 179 insertions(+), 76 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.haxx.se/libcurl>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 0.8.4 dated 2019-08-02 and 0.9.0 dated 2019-11-06
DESCRIPTION | 9 +- MD5 | 39 +++++---- NAMESPACE | 4 NEWS.md | 17 ++++ R/body.R | 14 ++- R/client.R | 2 R/content-types.R |only R/crul-package.r | 15 +++ R/response.R | 124 ++++++++++++++++++++++++++---- R/upload.R | 3 README.md | 28 +++--- inst/doc/best-practices-api-packages.R | 41 +++++++++ inst/doc/best-practices-api-packages.Rmd | 75 +++++++++++++++++- inst/doc/best-practices-api-packages.html | 67 ++++++++++++---- man/HttpResponse.Rd | 72 ++++++++++++++--- man/content-types.Rd |only man/crul-package.Rd | 18 ++++ tests/testthat/test-client-get.R | 13 +++ tests/testthat/test-client-head.R | 14 +++ tests/testthat/test-client-verb.R | 13 +++ tests/testthat/test-content-type.R |only vignettes/best-practices-api-packages.Rmd | 75 +++++++++++++++++- 22 files changed, 553 insertions(+), 90 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake <jefflaake@gmail.com> with code contributions from Eldar
Rakhimberdiev, Ben Augustine, Daniel Turek and Brett McClintock and example data and analysis
from Bret Collier, Jay Rotella, David Pavlacky, Andrew Paul, Luke Eberhart-
Phillips, Jake Ivan, and Connor Wood.
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 2.2.6 dated 2019-02-04 and 2.2.7 dated 2019-11-06
DESCRIPTION | 10 MD5 | 66 ++-- NEWS | 27 + R/RMark-package.R | 408 ++++++++++++++++++++---------- R/compute.design.data.R | 44 ++- R/covariate.predictions.r | 19 - R/get.real.R | 8 R/make.design.data.R | 39 ++ R/make.mark.model.R | 184 ++++++++----- R/mark.R | 5 R/model.average.marklist.R | 3 R/process.data.R | 8 R/utility.r | 1 R/var.components.R | 2 data/Paradise_shelduck.rda |only inst/MarkModels.pdf |binary inst/extdata/RDMultScalOcc.sampledata.csv |only inst/models.txt | 1 inst/parameters.txt | 3 man/MS_popan.Rd | 7 man/Paradise_shelduck.Rd |only man/RDMultScalOcc.Rd |only man/compute.design.data.Rd | 13 man/compute.links.from.reals.Rd | 4 man/compute.real.Rd | 4 man/covariate.predictions.Rd | 9 man/make.mark.model.Rd | 15 - man/mallard.Rd | 262 ++++++++++--------- man/mark.Rd | 26 + man/mark.wrapper.Rd | 4 man/model.table.Rd | 6 man/process.data.Rd | 8 man/release.gof.Rd | 3 man/run.mark.model.Rd | 7 man/setup.parameters.Rd | 4 man/wwdo.popan.Rd | 12 36 files changed, 768 insertions(+), 444 deletions(-)
Title: Variance Function Program
Description: Variance function estimation for models proposed by W. Sadler in his variance function program
('VFP', <http://www.aacb.asn.au/resources/useful-tools/variance-function-program-v14>). Here, the idea is
to fit multiple variance functions to a data set and consequently assess which function reflects
the relationship 'Var ~ Mean' best. For 'in-vitro diagnostic' ('IVD') assays modeling this relationship
is of great importance when individual test-results are used for defining follow-up treatment of patients.
Author: Andre Schuetzenmeister [cre, aut],
Florian Dufey [aut],
Andrea Geistanger [ctb]
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between VFP versions 1.0 dated 2018-07-31 and 1.1 dated 2019-11-06
DESCRIPTION | 8 +- MD5 | 28 +++++---- NAMESPACE | 3 - R/vfp.R | 125 +++++++++++++++++++++++++++++++++++++++++++- inst/ChangLog.txt |only man/B2mIntra_98.Rd | 2 man/Glucose.Rd | 2 man/MulitLotReproResults.Rd | 2 man/RealData1.Rd | 2 man/ReproData.Rd | 2 man/T4S9_99.Rd | 2 man/VFP-Package.Rd | 6 +- man/addGrid.Rd | 3 - man/coef.VFP.Rd | 3 + man/deriveCx.Rd |only man/plot.VFP.Rd | 4 - 16 files changed, 160 insertions(+), 32 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write data from neuroimaging files in 'FreeSurfer' <http://freesurfer.net/> binary formats. This includes the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.3 dated 2019-10-15 and 0.1.4 dated 2019-11-06
DESCRIPTION | 7 +- MD5 | 65 ++++++++++++---------- NAMESPACE | 9 +++ R/optdata.R |only R/read_fs_annot.R | 2 R/read_fs_curv.R | 7 +- R/read_fs_label.R | 2 R/read_fs_mgh.R | 2 R/read_fs_surface.R | 15 ++--- R/write_fs_curv.R | 4 + R/write_fs_mgh.R | 6 +- R/write_fs_surface.R | 5 + inst/doc/freesurferformats.R | 9 ++- inst/doc/freesurferformats.Rmd | 19 +++++- inst/doc/freesurferformats.html | 19 +++++- man/delete_all_optional_data.Rd |only man/download_optional_data.Rd |only man/fs.get.morph.file.ext.for.format.Rd | 7 ++ man/fs.get.morph.file.format.from.filename.Rd | 7 ++ man/get_optional_data_filepath.Rd |only man/list_optional_data.Rd |only man/read.fs.annot.Rd | 1 man/read.fs.curv.Rd | 10 +++ man/read.fs.label.Rd | 1 man/read.fs.mgh.Rd | 8 ++ man/read.fs.morph.Rd | 11 +++ man/read.fs.surface.Rd | 9 +-- man/write.fs.curv.Rd | 8 ++ man/write.fs.mgh.Rd | 12 +++- man/write.fs.morph.Rd | 8 ++ man/write.fs.surface.Rd | 4 + tests/testthat/test-read-fs-mgh.R | 14 ++++ tests/testthat/test-read-fs-surface.R | 75 ++++++++++++++++++++++---- tests/testthat/test-write-fs-surface.R | 14 ++-- vignettes/freesurferformats.Rmd | 19 +++++- vignettes/rgl_brain_aparc.jpg |binary 36 files changed, 296 insertions(+), 83 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Bayesian Graphical Models using MCMC
Description: Interface to the JAGS MCMC library.
Author: Martyn Plummer [aut, cre],
Alexey Stukalov [ctb],
Matt Denwood [ctb]
Maintainer: Martyn Plummer <martyn.plummer@gmail.com>
Diff between rjags versions 4-9 dated 2019-08-19 and 4-10 dated 2019-11-06
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- src/init.c | 35 +---------------------------------- src/init.h |only src/jags.cc | 4 +++- src/jags.cc.orig |only 6 files changed, 13 insertions(+), 42 deletions(-)
More information about BifactorIndicesCalculator at CRAN
Permanent link
More information about RVerbalExpressions at CRAN
Permanent link
Title: Exchange Commands Between R and 'JavaScript'
Description: An 'httpuv' based bridge between R and 'JavaScript'. Provides an easy way to exchange commands and data between a web page and a currently running R session.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between jrc versions 0.2.0 dated 2019-10-02 and 0.2.1 dated 2019-11-06
DESCRIPTION | 10 ++++---- MD5 | 14 ++++++------ NAMESPACE | 1 NEWS.md | 11 +++++++++ R/jrc.R | 58 ++++++++++++++++++++++++++------------------------ inst/http_root/jrc.js | 16 +++++++++++-- man/callFunction.Rd | 2 - man/sendHTML.Rd | 5 +++- 8 files changed, 73 insertions(+), 44 deletions(-)
Title: Main Package of the EMU Speech Database Management System
Description: Provides the next iteration of the EMU Speech
Database Management System (EMU-SDMS) with database management, data
extraction, data preparation and data visualization facilities.
Author: Raphael Winkelmann [aut, cre],
Klaus Jaensch [aut, ctb],
Steve Cassidy [aut, ctb],
Jonathan Harrington [aut, ctb]
Maintainer: Raphael Winkelmann <raphael@phonetik.uni-muenchen.de>
Diff between emuR versions 2.0.3 dated 2019-09-02 and 2.0.4 dated 2019-11-06
DESCRIPTION | 6 MD5 | 30 +- NEWS.md | 13 - R/emuR-autoproc_annots.R | 4 R/emuR-create_seglists.R | 2 R/emuR-database.R | 28 +- R/emuR-database.caching.R | 4 R/emuR-emuRsegs.R | 9 R/emuR-export_TextGridCollection.R | 2 R/emuR-query.database.R | 2 R/emuR-requery.database.R | 8 R/emuR-server.R | 22 +- inst/doc/EQL.html | 4 inst/doc/emuR_intro.html | 4 tests/testthat/test_emuR-autoproc_annots.R | 281 ++++++++++++++-------------- tests/testthat/test_emuR-requery.database.R | 14 + 16 files changed, 240 insertions(+), 193 deletions(-)
Title: Graph Theory Analysis of Brain MRI Data
Description: A set of tools for performing graph theory analysis of brain MRI
data. It works with data from a Freesurfer analysis (cortical thickness,
volumes, local gyrification index, surface area), diffusion tensor
tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
DPABI). It contains a graphical user interface for graph visualization and
data exploration, along with several functions for generating useful
figures.
Author: Christopher G. Watson [aut, cre]
(<https://orcid.org/0000-0002-7082-7631>)
Maintainer: Christopher G. Watson <cgwatson@bu.edu>
Diff between brainGraph versions 2.2.0 dated 2018-05-29 and 2.7.2 dated 2019-11-06
brainGraph-2.2.0/brainGraph/R/brainGraph_init.R |only brainGraph-2.2.0/brainGraph/R/plot_brainGraph_list.R |only brainGraph-2.2.0/brainGraph/R/plot_corr_mat.R |only brainGraph-2.2.0/brainGraph/man/aal116.Rd |only brainGraph-2.2.0/brainGraph/man/aal2.120.Rd |only brainGraph-2.2.0/brainGraph/man/aal2.94.Rd |only brainGraph-2.2.0/brainGraph/man/aal90.Rd |only brainGraph-2.2.0/brainGraph/man/analysis_random_graphs.Rd |only brainGraph-2.2.0/brainGraph/man/bg_to_mediate.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_GLM.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_GLM_design.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_GLM_fit.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_boot.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_init.Rd |only brainGraph-2.2.0/brainGraph/man/brainGraph_mediate.Rd |only brainGraph-2.2.0/brainGraph/man/brainsuite.Rd |only brainGraph-2.2.0/brainGraph/man/color_vertices_edges.Rd |only brainGraph-2.2.0/brainGraph/man/corr.matrix.Rd |only brainGraph-2.2.0/brainGraph/man/craddock200.Rd |only brainGraph-2.2.0/brainGraph/man/destrieux.Rd |only brainGraph-2.2.0/brainGraph/man/destrieux.scgm.Rd |only brainGraph-2.2.0/brainGraph/man/dk.Rd |only brainGraph-2.2.0/brainGraph/man/dk.scgm.Rd |only brainGraph-2.2.0/brainGraph/man/dkt.Rd |only brainGraph-2.2.0/brainGraph/man/dkt.scgm.Rd |only brainGraph-2.2.0/brainGraph/man/dosenbach160.Rd |only brainGraph-2.2.0/brainGraph/man/get.resid.Rd |only brainGraph-2.2.0/brainGraph/man/hoa112.Rd |only brainGraph-2.2.0/brainGraph/man/is.brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/lpba40.Rd |only brainGraph-2.2.0/brainGraph/man/make_empty_brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/make_glm_brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/make_mediate_brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/make_nbs_brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/plot.bg_GLM.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_GLM.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_NBS.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_boot.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_mediate.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_mtpc.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_permute.Rd |only brainGraph-2.2.0/brainGraph/man/plot.brainGraph_resids.Rd |only brainGraph-2.2.0/brainGraph/man/plot.mtpc.Rd |only brainGraph-2.2.0/brainGraph/man/plot_brainGraph_list.Rd |only brainGraph-2.2.0/brainGraph/man/plot_corr_mat.Rd |only brainGraph-2.2.0/brainGraph/man/set_brainGraph_attr.Rd |only brainGraph-2.2.0/brainGraph/man/summary.bg_GLM.Rd |only brainGraph-2.2.0/brainGraph/man/summary.bg_mediate.Rd |only brainGraph-2.2.0/brainGraph/man/summary.brainGraph.Rd |only brainGraph-2.2.0/brainGraph/man/summary.brainGraph_permute.Rd |only brainGraph-2.2.0/brainGraph/man/xfm.weights.Rd |only brainGraph-2.7.2/brainGraph/DESCRIPTION | 26 brainGraph-2.7.2/brainGraph/MD5 | 279 +- brainGraph-2.7.2/brainGraph/NAMESPACE | 121 - brainGraph-2.7.2/brainGraph/NEWS.md | 180 + brainGraph-2.7.2/brainGraph/R/NBS.R | 283 -- brainGraph-2.7.2/brainGraph/R/analysis_random_graphs.R | 229 -- brainGraph-2.7.2/brainGraph/R/atlas.R |only brainGraph-2.7.2/brainGraph/R/auc.R |only brainGraph-2.7.2/brainGraph/R/boot_global.R | 145 - brainGraph-2.7.2/brainGraph/R/brainGraph_GLM.R | 1096 ++++------ brainGraph-2.7.2/brainGraph/R/brainGraph_mediate.R | 288 +- brainGraph-2.7.2/brainGraph/R/centr_lev.R | 26 brainGraph-2.7.2/brainGraph/R/communicability.R | 44 brainGraph-2.7.2/brainGraph/R/contract_brainGraph.R | 64 brainGraph-2.7.2/brainGraph/R/corr_matrix.R | 286 ++ brainGraph-2.7.2/brainGraph/R/count_edges.R | 80 brainGraph-2.7.2/brainGraph/R/create_graphs.R | 698 ++---- brainGraph-2.7.2/brainGraph/R/create_mats.R | 298 +- brainGraph-2.7.2/brainGraph/R/data.R |only brainGraph-2.7.2/brainGraph/R/data_tables.R | 132 - brainGraph-2.7.2/brainGraph/R/distances.R |only brainGraph-2.7.2/brainGraph/R/edge_asymmetry.R | 23 brainGraph-2.7.2/brainGraph/R/get_resid.R | 267 +- brainGraph-2.7.2/brainGraph/R/glm_design.R |only brainGraph-2.7.2/brainGraph/R/glm_methods.R |only brainGraph-2.7.2/brainGraph/R/glm_randomise.R |only brainGraph-2.7.2/brainGraph/R/glm_stats.R |only brainGraph-2.7.2/brainGraph/R/graph_efficiency.R | 72 brainGraph-2.7.2/brainGraph/R/hubs.R |only brainGraph-2.7.2/brainGraph/R/import.R |only brainGraph-2.7.2/brainGraph/R/individ_contrib.R | 375 ++- brainGraph-2.7.2/brainGraph/R/list.R |only brainGraph-2.7.2/brainGraph/R/method_helpers.R |only brainGraph-2.7.2/brainGraph/R/methods.R |only brainGraph-2.7.2/brainGraph/R/mtpc.R | 221 -- brainGraph-2.7.2/brainGraph/R/permute_group.R | 189 - brainGraph-2.7.2/brainGraph/R/plot_brainGraph.R | 563 ++--- brainGraph-2.7.2/brainGraph/R/plot_brainGraph_gui.R | 20 brainGraph-2.7.2/brainGraph/R/plot_brainGraph_multi.R | 244 +- brainGraph-2.7.2/brainGraph/R/plot_global.R | 121 - brainGraph-2.7.2/brainGraph/R/plot_group_means.R | 10 brainGraph-2.7.2/brainGraph/R/plot_rich_norm.R | 103 brainGraph-2.7.2/brainGraph/R/plot_vertex_measures.R | 62 brainGraph-2.7.2/brainGraph/R/random_graphs.R | 247 +- brainGraph-2.7.2/brainGraph/R/rich_club.R | 217 + brainGraph-2.7.2/brainGraph/R/robustness.R | 118 - brainGraph-2.7.2/brainGraph/R/s_core.R | 13 brainGraph-2.7.2/brainGraph/R/set_brainGraph_attributes.R | 421 ++- brainGraph-2.7.2/brainGraph/R/small_world.R | 91 brainGraph-2.7.2/brainGraph/R/spatial_dist.R | 17 brainGraph-2.7.2/brainGraph/R/sysdata.rda |binary brainGraph-2.7.2/brainGraph/R/update_brainGraph_gui.R | 43 brainGraph-2.7.2/brainGraph/R/utils.R | 379 +-- brainGraph-2.7.2/brainGraph/R/vertex_roles.R | 62 brainGraph-2.7.2/brainGraph/R/vulnerability.R | 48 brainGraph-2.7.2/brainGraph/R/write_brainnet.R | 72 brainGraph-2.7.2/brainGraph/R/zzz.R |only brainGraph-2.7.2/brainGraph/man/Bootstrapping.Rd |only brainGraph-2.7.2/brainGraph/man/NBS.Rd | 90 brainGraph-2.7.2/brainGraph/man/apply_thresholds.Rd | 14 brainGraph-2.7.2/brainGraph/man/atlas_helpers.Rd |only brainGraph-2.7.2/brainGraph/man/attributes.Rd |only brainGraph-2.7.2/brainGraph/man/auc_diff.Rd | 2 brainGraph-2.7.2/brainGraph/man/brainGraph.Rd |only brainGraph-2.7.2/brainGraph/man/brainGraphList.Rd |only brainGraph-2.7.2/brainGraph/man/brainGraph_permute.Rd | 68 brainGraph-2.7.2/brainGraph/man/brain_atlases.Rd |only brainGraph-2.7.2/brainGraph/man/centr_betw_comm.Rd | 9 brainGraph-2.7.2/brainGraph/man/centr_lev.Rd | 13 brainGraph-2.7.2/brainGraph/man/check_attributes.Rd |only brainGraph-2.7.2/brainGraph/man/choose.edges.Rd | 18 brainGraph-2.7.2/brainGraph/man/coeff_var.Rd | 3 brainGraph-2.7.2/brainGraph/man/communicability.Rd | 10 brainGraph-2.7.2/brainGraph/man/contract_brainGraph.Rd | 23 brainGraph-2.7.2/brainGraph/man/cor.diff.test.Rd | 27 brainGraph-2.7.2/brainGraph/man/correlation_matrices.Rd |only brainGraph-2.7.2/brainGraph/man/count_edges.Rd | 23 brainGraph-2.7.2/brainGraph/man/create_mats.Rd | 62 brainGraph-2.7.2/brainGraph/man/data_tables.Rd | 32 brainGraph-2.7.2/brainGraph/man/delete_all_attr.Rd | 2 brainGraph-2.7.2/brainGraph/man/dir2files.Rd |only brainGraph-2.7.2/brainGraph/man/edge_asymmetry.Rd | 5 brainGraph-2.7.2/brainGraph/man/efficiency.Rd | 26 brainGraph-2.7.2/brainGraph/man/get_lm_vars.Rd | 6 brainGraph-2.7.2/brainGraph/man/get_metadata.Rd |only brainGraph-2.7.2/brainGraph/man/get_rand_attrs.Rd |only brainGraph-2.7.2/brainGraph/man/get_thresholds.Rd |only brainGraph-2.7.2/brainGraph/man/glm.Rd |only brainGraph-2.7.2/brainGraph/man/glm_brainGraphList.Rd |only brainGraph-2.7.2/brainGraph/man/glm_design.Rd |only brainGraph-2.7.2/brainGraph/man/glm_fit.Rd |only brainGraph-2.7.2/brainGraph/man/glm_graph_plots.Rd |only brainGraph-2.7.2/brainGraph/man/glm_helpers.Rd | 80 brainGraph-2.7.2/brainGraph/man/glm_influence.Rd |only brainGraph-2.7.2/brainGraph/man/glm_info.Rd |only brainGraph-2.7.2/brainGraph/man/glm_model_select.Rd |only brainGraph-2.7.2/brainGraph/man/glm_stats.Rd |only brainGraph-2.7.2/brainGraph/man/hubness.Rd |only brainGraph-2.7.2/brainGraph/man/import_scn.Rd |only brainGraph-2.7.2/brainGraph/man/individ_contrib.Rd | 82 brainGraph-2.7.2/brainGraph/man/is_binary.Rd |only brainGraph-2.7.2/brainGraph/man/make_auc_brainGraph.Rd |only brainGraph-2.7.2/brainGraph/man/make_brainGraph.Rd | 233 +- brainGraph-2.7.2/brainGraph/man/make_ego_brainGraph.Rd | 11 brainGraph-2.7.2/brainGraph/man/matrix2list.Rd |only brainGraph-2.7.2/brainGraph/man/mean_distance_wt.Rd |only brainGraph-2.7.2/brainGraph/man/mediation.Rd |only brainGraph-2.7.2/brainGraph/man/methods.Rd |only brainGraph-2.7.2/brainGraph/man/mtpc.Rd | 107 brainGraph-2.7.2/brainGraph/man/partition.Rd | 38 brainGraph-2.7.2/brainGraph/man/plot.brainGraph.Rd | 120 - brainGraph-2.7.2/brainGraph/man/plot.brainGraphList.Rd |only brainGraph-2.7.2/brainGraph/man/plot_brainGraph_gui.Rd | 10 brainGraph-2.7.2/brainGraph/man/plot_brainGraph_multi.Rd | 131 - brainGraph-2.7.2/brainGraph/man/plot_global.Rd | 47 brainGraph-2.7.2/brainGraph/man/plot_mni.Rd |only brainGraph-2.7.2/brainGraph/man/plot_rich_norm.Rd | 24 brainGraph-2.7.2/brainGraph/man/plot_vertex_measures.Rd | 32 brainGraph-2.7.2/brainGraph/man/plot_volumetric.Rd | 14 brainGraph-2.7.2/brainGraph/man/random_graphs.Rd | 112 - brainGraph-2.7.2/brainGraph/man/randomise.Rd | 74 brainGraph-2.7.2/brainGraph/man/rename_levels.Rd |only brainGraph-2.7.2/brainGraph/man/residuals.Rd |only brainGraph-2.7.2/brainGraph/man/rich_club.Rd | 90 brainGraph-2.7.2/brainGraph/man/rich_club_attrs.Rd | 23 brainGraph-2.7.2/brainGraph/man/robustness.Rd | 38 brainGraph-2.7.2/brainGraph/man/rotation.Rd | 2 brainGraph-2.7.2/brainGraph/man/s_core.Rd | 9 brainGraph-2.7.2/brainGraph/man/set_graph_colors.Rd |only brainGraph-2.7.2/brainGraph/man/simpleCap.Rd |only brainGraph-2.7.2/brainGraph/man/small.world.Rd | 28 brainGraph-2.7.2/brainGraph/man/spatial_dist.Rd | 11 brainGraph-2.7.2/brainGraph/man/split_string.Rd |only brainGraph-2.7.2/brainGraph/man/subset_graph.Rd | 4 brainGraph-2.7.2/brainGraph/man/symmetrize_mats.Rd | 19 brainGraph-2.7.2/brainGraph/man/update_brainGraph_gui.Rd | 10 brainGraph-2.7.2/brainGraph/man/update_fs_names.Rd |only brainGraph-2.7.2/brainGraph/man/vertex_roles.Rd | 26 brainGraph-2.7.2/brainGraph/man/vif.bg_GLM.Rd |only brainGraph-2.7.2/brainGraph/man/vulnerability.Rd | 9 brainGraph-2.7.2/brainGraph/man/write_brainnet.Rd | 38 192 files changed, 5709 insertions(+), 4419 deletions(-)
Title: Functions for Analyzing and Plotting Estuary Monitoring Data
Description: Tools for performing routine analysis and plotting tasks with environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. This package builds
on the functionality of the SWMPr package <https://cran.r-project.org/web/packages/SWMPr/index.html>,
which is used to retrieve and organize the data. The combined set of tools
address common challenges associated with continuous time series data
for environmental decision making, and are intended for use in annual reporting activities.
References:
Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf>
Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>.
United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?dirEntryId=327030>.
United States Environmental Protection Agency (2012) <http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.646.1973&rep=rep1&type=pdf>.
Author: Julie Padilla [aut, ctb],
Marcus Beck [ctb],
Kimberly Cressman [ctb],
Dave Eslinger [cre, ctb],
Bob Rudis [ctb]
Maintainer: Dave Eslinger <dave.eslinger@noaa.gov>
Diff between SWMPrExtension versions 1.1.1 dated 2019-08-21 and 1.1.2 dated 2019-11-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ R/seasonal_dot.R | 47 +++++++++++++++++++++++++++++++++++------------ 4 files changed, 44 insertions(+), 18 deletions(-)
More information about SWMPrExtension at CRAN
Permanent link
Title: Calculating Concentration Risk under Solvency II
Description: Methods for determining spatial risk, in particular calculating the maximum value of insured fire risk policies of all buildings that are partly or fully located within circle of a radius of 200m.
Author: Martin Haringa
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.6.4 dated 2019-10-25 and 0.6.5 dated 2019-11-06
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++++---------- NAMESPACE | 10 ++++++++++ NEWS.md | 4 ++++ R/RcppExports.R | 4 ++-- R/haversine.R | 6 +++--- R/knmi_historic.R |only R/nl_gemeente.R | 19 +++++++++++++++++++ R/zzz.R | 3 ++- data/datalist | 1 + data/knmi_stations.rda |only man/knmi_historic_data.Rd |only man/knmi_stations.Rd |only src/RcppExports.cpp | 18 +++++++++--------- src/haversine_cpp.cpp | 28 +++++++++++++++++++++++++++- 15 files changed, 96 insertions(+), 31 deletions(-)
Title: Statistical Package for Analysis Related Cleaning Support
Description: To clean and analyze hospital data, and generate sets for statistical modeling.
Author: Wangjian Zhang, Bo Ye, Zhicheng Du, Ziqiang Lin, Jijin Yao, Yanan Jin, Wayne R. Lawrence, Yuantao Hao
Maintainer: Wangjian Zhang <wzhang27@albany.edu>
Diff between rSPARCS versions 0.0.6 dated 2019-09-26 and 0.0.7 dated 2019-11-06
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 2 +- R/FIPS.name.R | 2 +- R/mediationking.R |only man/mediationking.Rd |only 6 files changed, 11 insertions(+), 9 deletions(-)
Title: Scoring the EQ-5D Descriptive System
Description: EQ-5D is a standard instrument (<https://euroqol.org/eq-5d-instruments/>) that measures the quality of life
often used in clinical and economic evaluations of health care technologies. Both adult versions of EQ-5D (EQ-5D-3L and EQ-5D-5L)
contain a descriptive system and visual analog scale. The descriptive system measures the patient's health in 5 dimensions:
the 5L versions has 5 levels and 3L version has 3 levels. The descriptive system scores are usually converted to index values
using country specific values sets (that incorporates the country preferences). This package allows the calculation of both descriptive system
scores to the index value scores. The value sets for EQ-5D-3L are from the references mentioned in the website <https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/valuation/>
The value sets for EQ-5D-3L for a total of 31 countries are used for the valuation (see the user guide for a complete list of references).
The value sets for EQ-5D-5L are obtained from references mentioned in the <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/valuation-standard-value-sets/> and other sources.
The value sets for EQ-5D-5L for a total of 17 countries are used for the valuation (see the user guide for a complete list of references).
The package can also be used to map 5L scores to 3L index values for 10 countries: Denmark, France, Germany, Japan, Netherlands, Spain, Thailand, UK, USA, and Zimbabwe.
The value set and method for mapping are obtained from Van Hout et al (2012) <doi: 10.1016/j.jval.2012.02.008>.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between valueEQ5D versions 0.4.5 dated 2019-10-06 and 0.5.0 dated 2019-11-06
valueEQ5D-0.4.5/valueEQ5D/man/eq5dmap5Lto3L.Rd |only valueEQ5D-0.4.5/valueEQ5D/man/eq5dmap5Lto3LIndscores.Rd |only valueEQ5D-0.4.5/valueEQ5D/man/valueEQ5D3L.Rd |only valueEQ5D-0.4.5/valueEQ5D/man/valueEQ5D3LIndscores.Rd |only valueEQ5D-0.4.5/valueEQ5D/man/valueEQ5D5L.Rd |only valueEQ5D-0.4.5/valueEQ5D/man/valueEQ5D5LIndscores.Rd |only valueEQ5D-0.5.0/valueEQ5D/DESCRIPTION | 6 valueEQ5D-0.5.0/valueEQ5D/MD5 | 79 valueEQ5D-0.5.0/valueEQ5D/NAMESPACE | 48 valueEQ5D-0.5.0/valueEQ5D/R/basic_checks.R | 505 +- valueEQ5D-0.5.0/valueEQ5D/R/data.R | 2 valueEQ5D-0.5.0/valueEQ5D/R/eq5d.R | 1771 +++++----- valueEQ5D-0.5.0/valueEQ5D/README.md | 42 valueEQ5D-0.5.0/valueEQ5D/build/vignette.rds |binary valueEQ5D-0.5.0/valueEQ5D/inst/doc/User_Guide.R | 168 valueEQ5D-0.5.0/valueEQ5D/inst/doc/User_Guide.Rmd | 58 valueEQ5D-0.5.0/valueEQ5D/inst/doc/User_Guide.html | 1222 +++--- valueEQ5D-0.5.0/valueEQ5D/inst/extdata |only valueEQ5D-0.5.0/valueEQ5D/man/EQ5D3L_indexvalues.df.Rd | 188 - valueEQ5D-0.5.0/valueEQ5D/man/EQ5D3L_tariffs_TTO.df.Rd | 130 valueEQ5D-0.5.0/valueEQ5D/man/EQ5D3L_tariffs_VAS.df.Rd | 74 valueEQ5D-0.5.0/valueEQ5D/man/EQ5D5L_crosswalk_indexvalues.df.Rd | 44 valueEQ5D-0.5.0/valueEQ5D/man/EQ5D5L_indexvalues.df.Rd | 102 valueEQ5D-0.5.0/valueEQ5D/man/EQ5D5L_tariffs.df.Rd | 98 valueEQ5D-0.5.0/valueEQ5D/man/Probability_matrix_crosswalk.df.Rd | 38 valueEQ5D-0.5.0/valueEQ5D/man/checkColumnExist.Rd | 44 valueEQ5D-0.5.0/valueEQ5D/man/checkScores3L.Rd | 58 valueEQ5D-0.5.0/valueEQ5D/man/checkScores5L.Rd | 57 valueEQ5D-0.5.0/valueEQ5D/man/convertNumberToIndividualDigits.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/descriptiveStatDataColumn.Rd | 48 valueEQ5D-0.5.0/valueEQ5D/man/dot-correctImplausibleOrdering.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/getColNumExistingColNames.Rd | 48 valueEQ5D-0.5.0/valueEQ5D/man/getColumnNoColNames.Rd | 44 valueEQ5D-0.5.0/valueEQ5D/man/getFrequencyTable.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/getModeForVec.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/map5Lto3L.Rd |only valueEQ5D-0.5.0/valueEQ5D/man/map5Lto3LInd.Rd |only valueEQ5D-0.5.0/valueEQ5D/man/replaceSpaceUnderscore.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/subsetGenderAgeToGroup.Rd | 52 valueEQ5D-0.5.0/valueEQ5D/man/testDataNumNorange.Rd | 44 valueEQ5D-0.5.0/valueEQ5D/man/testFileExistRead.Rd | 40 valueEQ5D-0.5.0/valueEQ5D/man/value3L.Rd |only valueEQ5D-0.5.0/valueEQ5D/man/value3LInd.Rd |only valueEQ5D-0.5.0/valueEQ5D/man/value5L.Rd |only valueEQ5D-0.5.0/valueEQ5D/man/value5LInd.Rd |only valueEQ5D-0.5.0/valueEQ5D/tests/testthat/testthat.R | 1104 ++---- valueEQ5D-0.5.0/valueEQ5D/vignettes/User_Guide.Rmd | 58 47 files changed, 3122 insertions(+), 3250 deletions(-)
Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 1.7.4 dated 2019-10-10 and 1.7.5 dated 2019-11-06
DESCRIPTION | 17 +++------ MD5 | 76 +++++++++++++++++++++++++++++++++++++++---- R/wrapPoly.R | 3 + data/worldMap.RData |only inst/doc/mapmisc.pdf |binary inst/doc/north.html | 10 ++--- inst/extdata/wmflabs.org.osm |only inst/extdoc/mapLayers.Rmd |only inst/extsrc/world.R |only man/geocode.Rd | 4 +- man/worldMap.Rd |only tests/worldMap.R | 37 +++++++++++--------- vignettes/mapmiscCache |only 13 files changed, 107 insertions(+), 40 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-18 0.5.2
2018-07-03 0.5.0
2016-02-10 0.2
2016-01-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-22 0.2.2
2019-05-23 0.2.1
2019-05-14 0.2.0
2019-04-27 0.1.1
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre],
Florian Schwendinger [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.5.2 dated 2019-05-10 and 0.5.3 dated 2019-11-06
DESCRIPTION | 8 - MD5 | 10 +- NEWS.md | 8 + R/ecos.R | 15 +-- build/vignette.rds |binary inst/doc/examples.html | 236 ++++++++++++++++++++++++++++++++++++++++++++----- 6 files changed, 237 insertions(+), 40 deletions(-)
Title: Read, Validate, Analyze, and Map Files in the General Transit
Feed Specification
Description: Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <http://gtfs.org/>.
Author: Flavio Poletti [aut],
Tom Buckley [aut, cre],
Danton Noriega-Goodwin [aut],
Mark Padgham [aut],
Elaine McVey [ctb],
Charles Hans Thompson [ctb],
Michael Sumner [ctb],
Patrick Hausmann [ctb],
Bob Rudis [ctb],
James Lamb [ctb],
Angela Li [ctb],
Kearey Smith [ctb],
Dave Vautin [ctb],
Kyle Walker [ctb]
Maintainer: Tom Buckley <tom@tbuckl.com>
Diff between tidytransit versions 0.6 dated 2019-10-14 and 0.6.1 dated 2019-11-06
tidytransit-0.6.1/tidytransit/DESCRIPTION | 19 - tidytransit-0.6.1/tidytransit/MD5 | 114 +++--- tidytransit-0.6.1/tidytransit/NAMESPACE | 10 tidytransit-0.6.1/tidytransit/R/data.R | 2 tidytransit-0.6.1/tidytransit/R/frequencies.R | 33 - tidytransit-0.6.1/tidytransit/R/import.R | 144 +++---- tidytransit-0.6.1/tidytransit/R/joins.R | 9 tidytransit-0.6.1/tidytransit/R/plot.R | 18 tidytransit-0.6.1/tidytransit/R/raptor.R | 52 +- tidytransit-0.6.1/tidytransit/R/service.R | 2 tidytransit-0.6.1/tidytransit/R/spatial.R | 183 +++++----- tidytransit-0.6.1/tidytransit/R/summary.R | 26 - tidytransit-0.6.1/tidytransit/R/time.R | 18 tidytransit-0.6.1/tidytransit/R/transitfeeds.R | 73 ++- tidytransit-0.6.1/tidytransit/R/utils.R | 36 + tidytransit-0.6.1/tidytransit/R/validate.R | 3 tidytransit-0.6.1/tidytransit/data/gtfs_duke.rda |only tidytransit-0.6.1/tidytransit/inst/doc/frequency.R | 14 tidytransit-0.6.1/tidytransit/inst/doc/frequency.Rmd | 34 + tidytransit-0.6.1/tidytransit/inst/doc/frequency.html | 121 ++++-- tidytransit-0.6.1/tidytransit/inst/doc/introduction.Rmd | 4 tidytransit-0.6.1/tidytransit/inst/doc/introduction.html | 41 +- tidytransit-0.6.1/tidytransit/inst/doc/servicepatterns.R | 2 tidytransit-0.6.1/tidytransit/inst/doc/servicepatterns.Rmd | 2 tidytransit-0.6.1/tidytransit/inst/doc/servicepatterns.html | 35 + tidytransit-0.6.1/tidytransit/inst/doc/timetable.R | 2 tidytransit-0.6.1/tidytransit/inst/doc/timetable.Rmd | 2 tidytransit-0.6.1/tidytransit/inst/doc/timetable.html | 35 + tidytransit-0.6.1/tidytransit/man/agency_info.Rd |only tidytransit-0.6.1/tidytransit/man/feed_contains.Rd |only tidytransit-0.6.1/tidytransit/man/filter_stop_times.Rd | 5 tidytransit-0.6.1/tidytransit/man/filter_stop_times_by_hour.Rd | 3 tidytransit-0.6.1/tidytransit/man/filter_stops.Rd | 2 tidytransit-0.6.1/tidytransit/man/get_feedlist.Rd | 2 tidytransit-0.6.1/tidytransit/man/get_route_frequency.Rd | 8 tidytransit-0.6.1/tidytransit/man/get_route_geometry.Rd | 21 - tidytransit-0.6.1/tidytransit/man/get_stop_frequency.Rd | 13 tidytransit-0.6.1/tidytransit/man/get_trip_geometry.Rd |only tidytransit-0.6.1/tidytransit/man/gtfs_as_sf.Rd | 12 tidytransit-0.6.1/tidytransit/man/gtfs_duke.Rd |only tidytransit-0.6.1/tidytransit/man/plot.gtfs.Rd | 3 tidytransit-0.6.1/tidytransit/man/raptor.Rd | 19 - tidytransit-0.6.1/tidytransit/man/read_gtfs.Rd | 16 tidytransit-0.6.1/tidytransit/man/set_date_service_table.Rd | 5 tidytransit-0.6.1/tidytransit/man/set_hms_times.Rd | 7 tidytransit-0.6.1/tidytransit/man/shapes_as_sf.Rd |only tidytransit-0.6.1/tidytransit/man/stops_as_sf.Rd |only tidytransit-0.6.1/tidytransit/man/summary.gtfs.Rd | 2 tidytransit-0.6.1/tidytransit/man/travel_times.Rd | 16 tidytransit-0.6.1/tidytransit/man/unzip_file.Rd | 2 tidytransit-0.6.1/tidytransit/tests/testthat/test-headways.R | 15 tidytransit-0.6.1/tidytransit/tests/testthat/test-import-gtfs.R | 6 tidytransit-0.6.1/tidytransit/tests/testthat/test-raptor.R | 125 +++--- tidytransit-0.6.1/tidytransit/tests/testthat/test-spatial.R | 72 +++ tidytransit-0.6.1/tidytransit/tests/testthat/test-utils.R | 4 tidytransit-0.6.1/tidytransit/vignettes/frequency.Rmd | 34 + tidytransit-0.6.1/tidytransit/vignettes/introduction.Rmd | 4 tidytransit-0.6.1/tidytransit/vignettes/servicepatterns.Rmd | 2 tidytransit-0.6.1/tidytransit/vignettes/timetable.Rmd | 2 tidytransit-0.6/tidytransit/data/gtfs_obj.rda |only tidytransit-0.6/tidytransit/man/get_stop_geometry.Rd |only tidytransit-0.6/tidytransit/man/gtfs_obj.Rd |only tidytransit-0.6/tidytransit/man/planner_buffer.Rd |only tidytransit-0.6/tidytransit/man/shapes_as_sfg.Rd |only 64 files changed, 872 insertions(+), 562 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and R maintainer until
2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.44-1.1 dated 2019-04-01 and 3.1-6 dated 2019-11-06
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Title: The Unifed Distribution
Description: Probability functions, family for glm() and Stan code for working with the unifed distribution (Quijano Xacur, 2019; <doi:10.1186/s40488-019-0102-6>).
Author: Oscar Alberto Quijano Xacur [aut,cre]
Maintainer: Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>
Diff between unifed versions 1.1.1 dated 2019-07-30 and 1.1.2 dated 2019-11-06
ChangeLog | 4 DESCRIPTION | 10 MD5 | 20 R/dunifed.R | 3 R/unifed.kappa.R | 3 build/vignette.rds |binary inst/CITATION | 17 inst/doc/introduction_unifed.html | 922 ++++++++++++-------------------------- man/dunifed.Rd | 3 man/unifed.kappa.Rd | 3 vignettes/bibliography.bib | 19 11 files changed, 366 insertions(+), 638 deletions(-)
Title: Shadow Text Grob and Layer
Description: Implement shadowtextGrob() for 'grid' and geom_shadowtext() layer for 'ggplot2'.
These functions create/draw text grob with background shadow.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between shadowtext versions 0.0.6 dated 2019-09-09 and 0.0.7 dated 2019-11-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/shadowtext-grob.R | 4 ++-- inst/doc/shadowtext.html | 8 ++++---- 4 files changed, 12 insertions(+), 12 deletions(-)