Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-03 2.0.1
Title: Simulate Genetic Sequence Data for Pedigrees
Description: Methods to simulate genetic sequence data for pedigrees, with
functionality to simulate genetic heterogeneity among pedigrees.
Christina Nieuwoudt, Angela Brooks-Wilson,
and Jinko Graham (2019) <doi:10.1101/534552>.
Author: Christina Nieuwoudt [aut, cre],
Jinko Graham [aut]
Maintainer: Christina Nieuwoudt <cnieuwou@sfu.ca>
Diff between SimRVSequences versions 0.2.2 dated 2019-12-07 and 0.2.3 dated 2020-01-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/doc/SimRVSequences.html | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about SimRVSequences at CRAN
Permanent link
Title: Estimate Parameters of Mixtures of Logistic Regressions
Description: Mixture of logistic regressions parameters (H)estimation with
(U)spectral methods. The main methods take d-dimensional inputs and a vector
of binary outputs, and return parameters according to the GLMs mixture model
(General Linear Model). For more details see chapter 3 in the PhD thesis of
Mor-Absa Loum: <http://www.theses.fr/s156435>, available here
<https://tel.archives-ouvertes.fr/tel-01877796/document>.
Author: Benjamin Auder <Benjamin.Auder@u-psud.fr> [aut,cre],
Mor-Absa Loum <Mor-Absa.Loum@u-psud.fr> [aut]
Maintainer: Benjamin Auder <Benjamin.Auder@u-psud.fr>
Diff between morpheus versions 1.0-0 dated 2020-01-10 and 1.0-1 dated 2020-01-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/Makevars | 4 ++-- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: C Resource Cleanup via Exit Handlers
Description: Wrapper of .Call() that runs exit handlers to clean up
C resources. Helps managing C (non-R) resources while using the
R API.
Author: Lionel Henry [aut],
Gábor Csárdi [aut, cre] (<https://orcid.org/0000-0001-7098-9676>),
RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between cleancall versions 0.1.0 dated 2019-05-20 and 0.1.1 dated 2020-01-11
cleancall-0.1.0/cleancall/inst/README.markdown |only cleancall-0.1.1/cleancall/DESCRIPTION | 6 +- cleancall-0.1.1/cleancall/MD5 | 10 +-- cleancall-0.1.1/cleancall/NEWS.md | 4 + cleancall-0.1.1/cleancall/README.md |only cleancall-0.1.1/cleancall/src/invoke.c | 2 cleancall-0.1.1/cleancall/src/test.c | 64 +++++++++++++++---------- 7 files changed, 53 insertions(+), 33 deletions(-)
Title: Streamline Bioacoustic Analysis
Description: Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. Users can collect open-access avian recordings or enter their own data into a workflow that facilitates spectrographic visualization and measurement of acoustic parameters. 'warbleR' makes use of the basic sound analysis tools from the package 'seewave', and offers new tools for acoustic structure analysis. The main features of the package are the use of loops to apply tasks through acoustic signals referenced in a selection (annotation) table and the production of spectrograms in image files that allow to organize data and verify acoustic analyzes. The package offers functions to explore, organize and manipulate multiple sound files, explore and download 'Xeno-Canto' recordings, detect signals automatically, create spectrograms of complete recordings or individual signals, run different measures of acoustic signal structure, evaluate the performance of measurement methods, catalog signals, characterize different structural levels in acoustic signals, run statistical analysis of duet coordination and consolidate databases and annotation tables, among others.
Author: Marcelo Araya-Salas [aut, cre]
(<https://orcid.org/0000-0003-3594-619X>),
Grace Smith-Vidaurre [aut]
Maintainer: Marcelo Araya-Salas <marceloa27@gmail.com>
Diff between warbleR versions 1.1.19 dated 2019-12-17 and 1.1.20 dated 2020-01-11
DESCRIPTION | 10 MD5 | 78 +- NAMESPACE | 4 NEWS.md | 17 R/catalog.R | 2 R/comp_matrix-data.R |only R/find_annotations.R |only R/find_peaks.R |only R/image_to_wave.R |only R/lbh_selec_table-data.R | 4 R/lbh_selec_table2-data.R |only R/rename_waves_est.R | 4 R/selection_table.R | 8 R/seltailor.R | 121 ++- R/sig2noise.R | 19 R/sim_songs.R | 229 +++--- R/specreator.R | 4 R/spectro_wrblr_int2.R | 4 R/warbleR-package.R | 7 R/wpd_feature_wrblr_int.R | 31 R/xcorr.R | 218 ++++-- build/vignette.rds |binary data/comp_matrix.rda |only data/lbh_selec_table2.rda |only data/selec.table.rda |binary data/sim.coor.sing.rda |binary inst/doc/Intro_to_warbleR.html | 1312 -------------------------------------- inst/doc/warbleR_workflow_01.R | 2 inst/doc/warbleR_workflow_01.Rmd | 2 inst/doc/warbleR_workflow_01.html | 1289 ------------------------------------- inst/doc/warbleR_workflow_02.html | 1289 ------------------------------------- inst/doc/warbleR_workflow_03.html | 1297 ------------------------------------- man/comp_matrix.Rd |only man/find_annotations.Rd |only man/find_peaks.Rd |only man/image_to_wave.Rd |only man/lbh_selec_table.Rd | 4 man/lbh_selec_table2.Rd |only man/rename_waves_est.Rd | 2 man/seltailor.Rd | 2 man/sim_songs.Rd | 43 - man/specreator.Rd | 4 man/warbleR.Rd | 4 man/x_corr.Rd | 9 man/xcorr.Rd | 40 - vignettes/warbleR_workflow_01.Rmd | 2 46 files changed, 621 insertions(+), 5440 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.21 dated 2019-08-20 and 0.4.21-1 dated 2020-01-11
DESCRIPTION | 12 +- MD5 | 82 +++++++------- NAMESPACE | 2 NEWS | 7 + R/photobiologyInOut.r | 4 R/read-tuv-file.r | 5 README.md | 13 +- build/vignette.rds |binary inst/doc/user-guide.R | 36 +++--- inst/doc/user-guide.Rmd | 36 +++--- inst/doc/user-guide.html | 134 +++++++++++------------- man/as.colorSpec.Rd | 141 ++++++++++++------------- man/as.generic_mspct.Rd | 40 +++---- man/as.generic_spct.Rd | 40 +++---- man/colorSpec2mspct.Rd | 214 +++++++++++++++++++-------------------- man/hyperSpec2mspct.Rd | 160 ++++++++++++++--------------- man/photobiologyInOut-package.Rd | 104 +++++++++--------- man/read_ASTER_txt.Rd | 111 ++++++++++---------- man/read_FReD_csv.Rd | 96 +++++++++-------- man/read_avaspec_csv.Rd | 110 +++++++++++--------- man/read_csi_dat.Rd | 96 +++++++++-------- man/read_fmi2mspct.Rd | 99 +++++++++--------- man/read_fmi_cum.Rd | 164 ++++++++++++++++------------- man/read_licor_prn.Rd | 151 ++++++++++++++------------- man/read_macam_dta.Rd | 92 ++++++++-------- man/read_oo_jazirrad.Rd | 162 ++++++++++++++++------------- man/read_oo_pidata.Rd | 123 +++++++++++----------- man/read_oo_ssirrad.Rd | 108 ++++++++++--------- man/read_qtuv_txt.Rd | 99 +++++++++--------- man/read_tuv_usrout.Rd | 122 ++++++++++++---------- man/read_uvspec_disort.Rd | 119 +++++++++++---------- man/read_uvspec_disort_vesa.Rd | 107 ++++++++++--------- man/read_yoctopuce_csv.Rd | 98 +++++++++-------- man/rspec2mspct.Rd | 153 ++++++++++++++------------- tests/testthat/test-aster.R | 5 tests/testthat/test-avantes.R | 8 - tests/testthat/test-fred.R | 3 tests/testthat/test-licor.R | 9 + tests/testthat/test-macam.R | 3 tests/testthat/test-oo.R | 36 ++++-- tests/testthat/test-tuv.R | 29 +++-- vignettes/user-guide.Rmd | 36 +++--- 42 files changed, 1672 insertions(+), 1497 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.common versions 0.2.4 dated 2019-10-19 and 0.2.5 dated 2020-01-11
DESCRIPTION | 20 +++--- MD5 | 48 ++++++++-------- NAMESPACE | 2 NEWS.md | 4 + R/config.R | 21 +++++++ R/credential_providers.R | 44 ++++++++++++++ R/credentials.R | 15 +++-- R/custom_rds.R |only R/handlers_ec2query.R | 4 - R/handlers_query.R | 14 ++-- R/handlers_rest.R | 4 - R/signer_v4.R | 67 +++++++++++++++++++--- R/url.R | 26 ++++++-- man/get_config.Rd | 50 ++++++++-------- man/handlers.Rd | 72 ++++++++++++------------ man/is_empty.Rd | 52 ++++++++--------- man/new_handlers.Rd | 8 +- man/new_operation.Rd | 17 ++++- man/new_request.Rd | 8 +- man/new_service.Rd | 12 ++-- man/populate.Rd | 52 ++++++++--------- man/send_request.Rd | 8 +- man/set_config.Rd | 94 +++++++++++++++---------------- man/tags.Rd | 116 +++++++++++++++++++-------------------- tests/testthat/test_custom_rds.R |only tests/testthat/test_signer_v4.R | 25 +++++++- 26 files changed, 474 insertions(+), 309 deletions(-)
Title: Run 'roxygen2' on (Chunks of) Single Code Files
Description: Have you ever been tempted to create 'roxygen2'-style documentation
comments for one of your functions that was not part of one of your
packages (yet)?
This is exactly what this package is about: running 'roxygen2' on
(chunks of) a single code file.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between document versions 3.1.0 dated 2018-11-25 and 3.2.0 dated 2020-01-11
document-3.1.0/document/inst/runit |only document-3.2.0/document/DESCRIPTION | 12 document-3.2.0/document/LICENSE | 2 document-3.2.0/document/MD5 | 52 +-- document-3.2.0/document/NEWS.md | 5 document-3.2.0/document/R/document.R | 1 document-3.2.0/document/R/file_parsing.R | 1 document-3.2.0/document/R/utils.R | 3 document-3.2.0/document/README.md | 155 +++++----- document-3.2.0/document/build/vignette.rds |binary document-3.2.0/document/inst/doc/Introduction_to_document.R | 18 - document-3.2.0/document/inst/doc/Introduction_to_document.Rmd | 8 document-3.2.0/document/inst/doc/Introduction_to_document.html | 51 ++- document-3.2.0/document/inst/expected_files/simple.R | 2 document-3.2.0/document/inst/expected_files/simple.txt | 8 document-3.2.0/document/inst/files/simple.R | 2 document-3.2.0/document/inst/runit_tests |only document-3.2.0/document/man/check_package.Rd | 9 document-3.2.0/document/man/document.Rd | 22 - document-3.2.0/document/man/fake_package.Rd | 3 document-3.2.0/document/man/get_dpd.Rd | 1 document-3.2.0/document/man/get_lines_between_tags.Rd | 12 document-3.2.0/document/man/write_the_docs.Rd | 11 document-3.2.0/document/tests/runit.R | 36 +- document-3.2.0/document/tests/testthat.R | 2 document-3.2.0/document/tests/testthat/test_check.R | 4 document-3.2.0/document/tests/testthat/test_parse.R | 4 document-3.2.0/document/vignettes/Introduction_to_document.Rmd | 8 28 files changed, 247 insertions(+), 185 deletions(-)
Title: Various R Programming Tools for Plotting Data
Description: Various R programming tools for plotting data, including:
- calculating and plotting locally smoothed summary function as
('bandplot', 'wapply'),
- enhanced versions of standard plots ('barplot2', 'boxplot2',
'heatmap.2', 'smartlegend'),
- manipulating colors ('col2hex', 'colorpanel', 'redgreen',
'greenred', 'bluered', 'redblue', 'rich.colors'),
- calculating and plotting two-dimensional data summaries ('ci2d',
'hist2d'),
- enhanced regression diagnostic plots ('lmplot2', 'residplot'),
- formula-enabled interface to 'stats::lowess' function ('lowess'),
- displaying textual data in plots ('textplot', 'sinkplot'),
- plotting a matrix where each cell contains a dot whose size
reflects the relative magnitude of the elements ('balloonplot'),
- plotting "Venn" diagrams ('venn'),
- displaying Open-Office style plots ('ooplot'),
- plotting multiple data on same region, with separate axes
('overplot'),
- plotting means and confidence intervals ('plotCI', 'plotmeans'),
- spacing points in an x-y plot so they don't overlap ('space').
Author: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert
Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin
Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill
Venables
Maintainer: ORPHANED
Diff between gplots versions 3.0.1.1 dated 2019-01-27 and 3.0.1.2 dated 2020-01-11
DESCRIPTION | 12 ++++++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/venn.pdf |binary tests/heatmap2Test.R | 2 ++ tests/heatmap2Test.Rout.save | 12 +++++++----- 6 files changed, 22 insertions(+), 14 deletions(-)
Title: Tools for Analysing UK Politics
Description: Provides various tools for analysing UK political data, including
election result datasets, hexagonal cartograms and functions to
retrieve council member data.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between parlitools versions 0.3.4 dated 2019-09-15 and 0.4.0 dated 2020-01-11
DESCRIPTION | 10 MD5 | 49 NEWS.md | 6 R/data.R | 35 build/vignette.rds |binary data/bes_2017.rda |binary data/bes_2019.rda |only data/datalist | 1 data/leave_votes_west.rda |binary data/ni_ge_2017.rda |binary data/west_hex_map.rda |binary inst/doc/bes-2015.html | 34 inst/doc/bes-2017.html | 34 inst/doc/bes-2019.Rmd |only inst/doc/bes-2019.html |only inst/doc/census-11.html | 34 inst/doc/introduction.R | 94 - inst/doc/introduction.Rmd | 115 - inst/doc/introduction.html | 4035 --------------------------------------------- man/bes_2015.Rd | 4 man/bes_2017.Rd | 4 man/bes_2019.Rd |only man/census_11.Rd | 4 man/council_seats.Rd | 3 man/mps_on_date.Rd | 10 man/parlitools.Rd | 1 vignettes/bes-2019.Rmd |only vignettes/introduction.Rmd | 115 - 28 files changed, 213 insertions(+), 4375 deletions(-)
Title: Sensitivity Analysis of Neural Networks
Description: Analysis functions to quantify inputs importance in neural network models.
Functions are available for calculating and plotting the inputs importance and obtaining
the activation function of each neuron layer and its derivatives. The importance of a given
input is defined as the distribution of the derivatives of the output with respect to that
input in each training data point.
Author: José Portela González [aut],
Antonio Muñoz San Roque [aut],
Jaime Pizarroso Gonzalo [ctb, cre]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@comillas.edu>
Diff between NeuralSens versions 0.1.0 dated 2019-11-11 and 0.1.3 dated 2020-01-11
DESCRIPTION | 10 MD5 | 40 +- NAMESPACE | 2 R/SensTimePlot.R | 26 + R/SensitivityPlots.R | 31 + R/data.R | 18 data/DAILY_DEMAND_TR.rdata |binary data/DAILY_DEMAND_TV.rdata |binary data/simdata.rdata |binary man/ActFunc.Rd | 56 +- man/CombineSens.Rd | 64 +-- man/DAILY_DEMAND_TR.Rd | 38 - man/DAILY_DEMAND_TV.Rd | 36 - man/DerActFunc.Rd | 56 +- man/NeuralSens.Rd | 19 man/SensAnalysisMLP.Rd | 856 ++++++++++++++++++++++++--------------------- man/SensFeaturePlot.Rd | 128 +++--- man/SensTimePlot.Rd | 157 ++++---- man/SensitivityPlots.Rd | 139 +++---- man/simdata.Rd | 69 +-- man/syntheticdata.Rd | 88 ++-- 21 files changed, 974 insertions(+), 859 deletions(-)
Title: OpenWeatherMap API Wrapper
Description: Accesses OpenWeatherMap's (owm) <https://openweathermap.org/> API.
'owm' itself is a service providing weather data in the past, in the future and now.
Furthermore, 'owm' serves weather map layers usable in frameworks like 'leaflet'.
In order to access the API, you need to sign up for an API key. There are free and paid plans.
Beside functions for fetching weather data from 'owm', 'owmr' supplies
tools to tidy up fetched data (for fast and simple access) and to show it on leaflet maps.
Author: Stefan Kuethe [aut, cre],
Amanda Dobbyn [ctb]
Maintainer: Stefan Kuethe <crazycapivara@gmail.com>
Diff between owmr versions 0.8.1 dated 2018-11-03 and 0.8.2 dated 2020-01-11
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 20 ++++++++++++-------- R/response-to-tibble.R | 5 +++-- man/owmr_as_tibble.Rd | 3 --- man/reexports.Rd | 1 - 6 files changed, 25 insertions(+), 24 deletions(-)
Title: Low-Rank Methods for MVN and MVT Probabilities
Description: Implementation of the classic Genz algorithm and a novel tile-low-rank algorithm for computing relatively high-dimensional multivariate normal (MVN) and Student-t (MVT) probabilities.
References used for this package:
Foley, James, Andries van Dam, Steven Feiner, and John Hughes.
"Computer Graphics: Principle and Practice". Addison-Wesley
Publishing Company. Reading, Massachusetts (1987, ISBN:0-201-84840-6 1);
Genz, A., "Numerical computation of multivariate
normal probabilities," Journal of Computational and
Graphical Statistics, 1, 141-149 (1992) <doi:10.1080/10618600.1992.10477010>;
Cao, J., Genton, M. G., Keyes, D. E., & Turkiyyah, G. M. "Exploiting Low
Rank Covariance Structures for Computing High-Dimensional Normal and Student-
t Probabilities" (2019) <https://marcgenton.github.io/2019.CGKT.manuscript.pdf>.
Author: Jian Cao, Marc Genton, David Keyes, George Turkiyyah
Maintainer: Jian Cao <jian.cao@kaust.edu.sa>
Diff between tlrmvnmvt versions 1.0.0 dated 2019-11-04 and 1.0.1 dated 2020-01-11
DESCRIPTION | 8 +- MD5 | 30 ++++---- NEWS.md | 8 ++ R/RcppExports.R | 16 ++-- R/mvt.R | 8 +- R/tlrmvn.R | 8 +- R/tlrmvt.R | 15 +--- build/partial.rdb |binary src/RcppExports.cpp | 36 +++++----- src/cov_kernel.cpp | 5 - src/internal_r_func.cpp | 162 +++++++++++++++++++++++++++--------------------- src/mvt.cpp | 5 + src/mvt.h | 3 src/tlrmvt.cpp | 5 + src/tlrmvt.h | 5 - tests/mv_tlr.R | 1 16 files changed, 178 insertions(+), 137 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-15 4.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-18 1.4.3.1
2019-11-15 1.4.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-08 1.0.4
2013-03-20 1.0.3
2012-09-28 1.0.2
2012-04-23 1.0.1
2012-04-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-04 4.1-5
2019-09-22 4.1-4
2019-05-25 4.1-3
2019-05-08 4.1-2
2019-05-01 4.1-1
2019-03-13 4.1-0
2019-01-07 4.0-0
2018-06-03 3.2-1
2018-04-18 3.2-0
2018-04-10 3.1-2
2018-03-14 3.1-1
2016-09-22 3.1-0
2016-09-18 3.0-0
2016-07-15 2.5-0
2016-07-03 2.4-0
2016-06-03 2.3-0
2015-05-17 2.2-2
2015-03-08 2.2-1
2015-02-25 2.2-0
2015-01-11 2.1-1
2015-01-04 2.1-0
2014-12-15 2.0-0
2013-12-01 1.3-11
2013-08-03 1.3-10
2013-07-07 1.3-9
2013-06-23 1.3-8
2013-05-27 1.3-7
2013-04-22 1.3-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-05 1.0-73
2012-03-01 1.0-71
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-22 0.9.5.1
2014-11-06 0.9.1
2011-10-01 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-23 2.0.1
2018-11-01 2.0.0
2017-10-23 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-15 2.3.1
2018-03-26 2.3
2018-02-09 2.2
2014-03-21 2.000
2014-03-14 1.172
2012-10-13 1.171
2012-10-12 1.16.1
2010-03-13 1.16
2008-07-11 1.15
2008-05-14 1.1
2008-01-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-11 2.4.5
2015-12-18 2.4.4
2014-03-07 2.4.3
2013-10-31 2.4.2
2013-04-17 2.4.1
2013-02-26 2.4
2012-10-16 2.3
2012-08-20 2.2
2012-07-10 2.1
2012-02-10 2.0
2012-01-30 1.3
2011-11-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-15 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-12 1.1.7
2019-08-21 1.1.6
2017-01-19 1.1.5
2016-12-06 1.1.3
2014-12-03 1.1.2
2013-07-02 1.1.1
2013-06-13 1.1
2011-12-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-27 0.3.2
2018-01-31 0.2.1
2017-10-20 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-31 1.1.9
2016-01-13 1.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-29 1.3.0
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre],
Mike Johnson [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 0.3.11 dated 2019-11-07 and 0.3.12 dated 2020-01-11
nhdplusTools-0.3.11/nhdplusTools/man/calculate_levelpaths.Rd |only nhdplusTools-0.3.12/nhdplusTools/DESCRIPTION | 17 nhdplusTools-0.3.12/nhdplusTools/MD5 | 99 +- nhdplusTools-0.3.12/nhdplusTools/NAMESPACE | 27 nhdplusTools-0.3.12/nhdplusTools/NEWS.md | 10 nhdplusTools-0.3.12/nhdplusTools/R/calc_network.R | 169 ---- nhdplusTools-0.3.12/nhdplusTools/R/downloading_tools.R | 4 nhdplusTools-0.3.12/nhdplusTools/R/get_codes.R |only nhdplusTools-0.3.12/nhdplusTools/R/get_network.R | 22 nhdplusTools-0.3.12/nhdplusTools/R/get_nhdplus.R | 154 --- nhdplusTools-0.3.12/nhdplusTools/R/get_nhdplushr.R |only nhdplusTools-0.3.12/nhdplusTools/R/get_nldi.R | 71 + nhdplusTools-0.3.12/nhdplusTools/R/get_paths.R |only nhdplusTools-0.3.12/nhdplusTools/R/nhdplusTools.R | 59 - nhdplusTools-0.3.12/nhdplusTools/R/plot_nhdplus.R |only nhdplusTools-0.3.12/nhdplusTools/R/prep_nhdplus.R | 24 nhdplusTools-0.3.12/nhdplusTools/R/subset_nhdplus.R | 358 +++++---- nhdplusTools-0.3.12/nhdplusTools/build/vignette.rds |binary nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplusTools.R | 393 +++++----- nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplusTools.Rmd | 53 - nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplusTools.html | 215 ----- nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplushr.R |only nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplushr.Rmd |only nhdplusTools-0.3.12/nhdplusTools/inst/doc/nhdplushr.html |only nhdplusTools-0.3.12/nhdplusTools/inst/doc/plot_nhdplus.R | 268 +++--- nhdplusTools-0.3.12/nhdplusTools/inst/doc/plot_nhdplus.Rmd | 62 + nhdplusTools-0.3.12/nhdplusTools/inst/doc/plot_nhdplus.html | 119 +-- nhdplusTools-0.3.12/nhdplusTools/inst/doc/point_indexing.R | 154 +-- nhdplusTools-0.3.12/nhdplusTools/inst/doc/point_indexing.html | 16 nhdplusTools-0.3.12/nhdplusTools/inst/extdata/nhdplushr_data.R | 52 - nhdplusTools-0.3.12/nhdplusTools/man/calculate_arbolate_sum.Rd | 4 nhdplusTools-0.3.12/nhdplusTools/man/calculate_total_drainage_area.Rd | 4 nhdplusTools-0.3.12/nhdplusTools/man/discover_nldi_navigation.Rd | 13 nhdplusTools-0.3.12/nhdplusTools/man/download_nhdplushr.Rd | 2 nhdplusTools-0.3.12/nhdplusTools/man/download_nhdplusv2.Rd | 2 nhdplusTools-0.3.12/nhdplusTools/man/download_wbd.Rd | 2 nhdplusTools-0.3.12/nhdplusTools/man/get_hr_data.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_levelpaths.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_nhdplushr.Rd | 40 - nhdplusTools-0.3.12/nhdplusTools/man/get_nldi_feature.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_pathlength.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_pfaf.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_streamorder.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/get_terminal.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/make_standalone.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/navigate_nldi.Rd | 2 nhdplusTools-0.3.12/nhdplusTools/man/plot_nhdplus.Rd |only nhdplusTools-0.3.12/nhdplusTools/man/subset_nhdplus.Rd | 45 - nhdplusTools-0.3.12/nhdplusTools/tests/testthat/helper.R | 7 nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_align_nhdplus_names.R | 5 nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_calc_network.R |only nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_get_network.R | 23 nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_get_nhdplus.R | 31 nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_get_nhdplushr.R |only nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_get_nldi.R | 38 nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_nhdplusTools.R | 64 - nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_plot_nhdplus.R |only nhdplusTools-0.3.12/nhdplusTools/tests/testthat/test_subset.R | 158 +++- nhdplusTools-0.3.12/nhdplusTools/vignettes/nhdplusTools.Rmd | 53 - nhdplusTools-0.3.12/nhdplusTools/vignettes/nhdplushr.Rmd |only nhdplusTools-0.3.12/nhdplusTools/vignettes/plot_nhdplus.Rmd | 62 + 61 files changed, 1445 insertions(+), 1456 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-02 1.22.1
2015-09-03 1.22
2014-04-30 1.20
2013-10-28 1.18
2013-10-08 1.17
2013-03-14 1.16
2012-07-26 1.15
2012-06-17 1.14
2012-05-29 1.13
2012-02-03 1.12
2012-01-25 1.10
2011-08-02 1.08
2011-07-22 1.07
2011-03-09 1.06
2010-10-24 1.03
2010-08-12 1.02
2009-11-25 1.01
2009-08-23 1.00
2009-06-05 0.99-3
2009-05-24 0.99-2
2009-05-14 0.99-1
2009-01-14 0.98
2008-01-04 0.97
2008-01-01 0.96
2007-08-11 0.95
2007-05-29 0.94
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-18 0.58
2018-04-03 0.57
2015-08-20 0.56
2014-08-23 0.55
2013-11-26 0.52
2012-10-31 0.51
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-16 0.8-4
2012-01-25 0.8-3
2011-02-09 0.8-2
2011-01-03 0.8-1
2010-08-08 0.8-0
2010-07-31 0.7-9
2010-07-27 0.7-8
2009-06-05 0.7-7
2009-04-19 0.7-6
2009-03-29 0.7-5
2009-01-12 0.7-4
2008-11-07 0.7-0
2007-10-09 0.6-9
2007-10-01 0.6-8
2007-09-24 0.6-7
2007-07-23 0.6-5
2007-04-23 0.6-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-07 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-09 0.1.4
2018-03-07 0.1.2
2018-03-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-20 0.8.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-24 2.0.19
2018-12-15 2.0.18
2018-09-19 2.0.17
2018-07-09 2.0.15
2016-11-12 2.0.12
2016-05-09 2.0.9
2016-04-07 2.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-05 0.2
2015-12-23 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-06 0.1
Title: Character String Processing Facilities
Description: Fast, correct, consistent, portable and convenient character
string/text processing in every locale and any native encoding.
Owing to the use of the 'ICU' (International Components for Unicode)
library, the package provides 'R' users with platform-independent functions
known to 'Java', 'Perl', 'Python', 'PHP' and 'Ruby' programmers. Available
features include: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation,
Unicode normalization, date-time formatting and parsing and many more.
Author: Marek Gagolewski [aut, cre] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb]
and other contributors (stringi source code);
IBM, Unicode, Inc. and other contributors (ICU4C source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.4.4 dated 2020-01-09 and 1.4.5 dated 2020-01-11
DESCRIPTION | 11 ++++++----- INSTALL | 12 ++++++------ MD5 | 10 +++++----- NEWS | 6 ++++++ configure | 2 +- configure.ac | 2 +- 6 files changed, 25 insertions(+), 18 deletions(-)
Title: A Universal Foreach Parallel Adapter using the Future API of the
'future' Package
Description: Provides a '%dopar%' adapter such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.8.2 dated 2019-10-30 and 0.9.0 dated 2020-01-11
DESCRIPTION | 12 ++++++------ MD5 | 34 +++++++++++++++++----------------- NEWS | 12 ++++++++++++ R/doFuture-package.R | 1 + R/doFuture.R | 23 +++++++++++++++++++++-- R/registerDoFuture.R | 2 +- R/utils.R | 9 +++++++++ build/vignette.rds |binary inst/tests2/glmnet/examples.R | 9 +++++++++ man/doFuture.Rd | 6 +++--- man/makeChunks.Rd | 8 ++++++-- tests/foreach,errors.R | 9 +++------ tests/foreach,nested.R | 2 +- tests/foreach,nested_dopar.R | 4 ++-- tests/foreach.R | 3 +-- tests/future.BatchJobs.R | 6 ++---- tests/future.batchtools.R | 6 ++---- tests/times.R | 7 +++++-- 18 files changed, 101 insertions(+), 52 deletions(-)
Title: Identification and Analysis of ceRNA Regulation
Description: Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, For predictive ceRNA relationship pairs, this package
provides several downstream analysis algorithms, including regulatory network
analysis and functional annotation analysis, as well as survival prognosis analysis
based on expression of ceRNA ternary pair.
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer: Mengying Zhang <zhangmengying@hrbmu.edu.cn>
Diff between CeRNASeek versions 2.1 dated 2019-07-20 and 2.1.2 dated 2020-01-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/ceRNA.cernia.R | 2 +- R/ceRNA.cmi.R | 1 + R/ceRNA.surv.R | 2 +- R/surv.plot.R | 2 +- data/dataset.rda |binary 7 files changed, 14 insertions(+), 13 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Aust Frederik [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Ellis Valentiner [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Joyce Robbins [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Nathan Werth [ctb],
Noam Ross [ctb],
Peter Hickey [ctb],
Romain Lesur [ctb] (<https://orcid.org/0000-0002-0721-5595>),
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>),
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
Zeno Rocha [cph] (clipboard.js library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.16 dated 2019-11-22 and 0.17 dated 2020-01-11
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + R/ebook.R | 1 + R/html.R | 33 +++++++++++++++++++++++++-------- R/latex.R | 10 ++++++---- R/utils.R | 12 +++++++----- R/word.R | 18 ++++++++++++------ inst/templates/default.html | 3 +-- inst/templates/gitbook.html | 2 +- man/html_document2.Rd | 9 ++++++--- 11 files changed, 74 insertions(+), 43 deletions(-)
Title: House Price Indexes
Description: Compute house price indexes and series using a variety of different methods and
models common through the real estate literature. Evaluate index 'goodness' based
on accuracy, volatility and revision statistics. Background on basic model construction
for repeat sales models can be found at: Case and Quigley (1991)
<https://www.jstor.org/stable/2109686> and for hedonic pricing models at:
Bourassa et al (2006) <doi:10.1016/j.jhe.2006.03.001>. The package author's working paper on the
random forest approach to house price indexes can be found at: <http://www.github.com/andykrause/hpi_research>.
Author: Andy Krause [aut, cre]
Maintainer: Andy Krause <andyxkrause@gmail.com>
Diff between hpiR versions 0.2.0 dated 2018-08-08 and 0.3.0 dated 2020-01-11
hpiR-0.2.0/hpiR/man/hpiModel.heddata.Rd |only hpiR-0.2.0/hpiR/man/hpiModel.rtdata.Rd |only hpiR-0.3.0/hpiR/DESCRIPTION | 24 hpiR-0.3.0/hpiR/MD5 | 188 - hpiR-0.3.0/hpiR/NAMESPACE | 202 - hpiR-0.3.0/hpiR/NEWS.md | 27 hpiR-0.3.0/hpiR/R/calcAccuracy.R | 647 ++--- hpiR-0.3.0/hpiR/R/calcForecastError.R | 539 ++-- hpiR-0.3.0/hpiR/R/calcInSampleError.R | 243 - hpiR-0.3.0/hpiR/R/calcKFoldError.R | 553 ++-- hpiR-0.3.0/hpiR/R/calcRevision.R | 230 - hpiR-0.3.0/hpiR/R/calcVolatility.R | 453 +-- hpiR-0.3.0/hpiR/R/createSeries.R | 239 - hpiR-0.3.0/hpiR/R/dateToPeriod.R | 558 ++-- hpiR-0.3.0/hpiR/R/hedCreateTrans.R | 200 - hpiR-0.3.0/hpiR/R/hedIndex.R | 303 +- hpiR-0.3.0/hpiR/R/hedModel.R | 346 +- hpiR-0.3.0/hpiR/R/hpiModel.R | 728 +++-- hpiR-0.3.0/hpiR/R/hpiR.R | 20 hpiR-0.3.0/hpiR/R/hpir_data.R | 126 hpiR-0.3.0/hpiR/R/modelToIndex.R | 246 + hpiR-0.3.0/hpiR/R/plotFunctions.R | 1107 ++++---- hpiR-0.3.0/hpiR/R/rfIndex.R |only hpiR-0.3.0/hpiR/R/rfModel.R |only hpiR-0.3.0/hpiR/R/rtCreateTrans.R | 421 +-- hpiR-0.3.0/hpiR/R/rtIndex.R | 259 -- hpiR-0.3.0/hpiR/R/rtModel.R | 404 +-- hpiR-0.3.0/hpiR/R/rtTimeMatrix.R | 118 hpiR-0.3.0/hpiR/R/smoothIndex.R | 374 +- hpiR-0.3.0/hpiR/README.md | 129 - hpiR-0.3.0/hpiR/build/vignette.rds |binary hpiR-0.3.0/hpiR/data/datalist | 4 hpiR-0.3.0/hpiR/inst/doc/classstructure.R | 752 ++--- hpiR-0.3.0/hpiR/inst/doc/classstructure.Rmd | 1250 ++++----- hpiR-0.3.0/hpiR/inst/doc/classstructure.html | 1657 ++++++------- hpiR-0.3.0/hpiR/inst/doc/introduction.R | 1095 ++++---- hpiR-0.3.0/hpiR/inst/doc/introduction.Rmd | 1894 +++++++------- hpiR-0.3.0/hpiR/inst/doc/introduction.html | 2276 +++++++++--------- hpiR-0.3.0/hpiR/man/buildForecastIDs.Rd | 108 hpiR-0.3.0/hpiR/man/buildForecastIDs.heddata.Rd | 42 hpiR-0.3.0/hpiR/man/buildForecastIDs.rtdata.Rd | 42 hpiR-0.3.0/hpiR/man/calcAccuracy.Rd | 154 - hpiR-0.3.0/hpiR/man/calcForecastError.Rd | 175 - hpiR-0.3.0/hpiR/man/calcInSampleError.Rd | 122 hpiR-0.3.0/hpiR/man/calcInSampleError.heddata.Rd | 36 hpiR-0.3.0/hpiR/man/calcInSampleError.rtdata.Rd | 36 hpiR-0.3.0/hpiR/man/calcKFoldError.Rd | 145 - hpiR-0.3.0/hpiR/man/calcRevision.Rd | 136 - hpiR-0.3.0/hpiR/man/calcSeriesAccuracy.Rd | 151 - hpiR-0.3.0/hpiR/man/calcSeriesVolatility.Rd | 121 hpiR-0.3.0/hpiR/man/calcVolatility.Rd | 132 - hpiR-0.3.0/hpiR/man/checkDate.Rd | 56 hpiR-0.3.0/hpiR/man/createKFoldData.Rd | 108 hpiR-0.3.0/hpiR/man/createKFoldData.rtdata.Rd | 36 hpiR-0.3.0/hpiR/man/createSeries.Rd | 118 hpiR-0.3.0/hpiR/man/dateToPeriod.Rd | 108 hpiR-0.3.0/hpiR/man/ex_sales.Rd | 78 hpiR-0.3.0/hpiR/man/hedCreateTrans.Rd | 98 hpiR-0.3.0/hpiR/man/hedIndex.Rd | 121 hpiR-0.3.0/hpiR/man/hedModel.Rd | 96 hpiR-0.3.0/hpiR/man/hedModel.base.Rd | 50 hpiR-0.3.0/hpiR/man/hedModel.robust.Rd | 56 hpiR-0.3.0/hpiR/man/hedModel.weighted.Rd | 50 hpiR-0.3.0/hpiR/man/hpiModel.Rd | 123 hpiR-0.3.0/hpiR/man/hpiModel.hed.Rd |only hpiR-0.3.0/hpiR/man/hpiModel.rf.Rd |only hpiR-0.3.0/hpiR/man/hpiModel.rt.Rd |only hpiR-0.3.0/hpiR/man/hpiR.Rd | 22 hpiR-0.3.0/hpiR/man/matchKFold.Rd | 56 hpiR-0.3.0/hpiR/man/matchKFold.heddata.Rd | 32 hpiR-0.3.0/hpiR/man/matchKFold.rtdata.Rd | 32 hpiR-0.3.0/hpiR/man/modelToIndex.Rd | 100 hpiR-0.3.0/hpiR/man/plot.hpi.Rd | 100 hpiR-0.3.0/hpiR/man/plot.hpiaccuracy.Rd | 109 hpiR-0.3.0/hpiR/man/plot.hpiindex.Rd | 99 hpiR-0.3.0/hpiR/man/plot.indexvolatility.Rd | 96 hpiR-0.3.0/hpiR/man/plot.seriesaccuracy.Rd | 110 hpiR-0.3.0/hpiR/man/plot.serieshpi.Rd | 102 hpiR-0.3.0/hpiR/man/plot.seriesrevision.Rd | 108 hpiR-0.3.0/hpiR/man/rfIndex.Rd |only hpiR-0.3.0/hpiR/man/rfModel.Rd |only hpiR-0.3.0/hpiR/man/rfModel.pdp.Rd |only hpiR-0.3.0/hpiR/man/rfSimDf.Rd |only hpiR-0.3.0/hpiR/man/rtCreateTrans.Rd | 122 hpiR-0.3.0/hpiR/man/rtIndex.Rd | 104 hpiR-0.3.0/hpiR/man/rtModel.Rd | 115 hpiR-0.3.0/hpiR/man/rtModel.base.Rd | 54 hpiR-0.3.0/hpiR/man/rtModel.robust.Rd | 57 hpiR-0.3.0/hpiR/man/rtModel.weighted.Rd | 54 hpiR-0.3.0/hpiR/man/rtTimeMatrix.Rd | 78 hpiR-0.3.0/hpiR/man/seattle_sales.Rd | 74 hpiR-0.3.0/hpiR/man/smoothIndex.Rd | 122 hpiR-0.3.0/hpiR/man/smoothSeries.Rd | 110 hpiR-0.3.0/hpiR/tests/testthat/test_1_prepfunctions.R | 587 ++-- hpiR-0.3.0/hpiR/tests/testthat/test_2_repeatsales.R | 1893 +++++++------- hpiR-0.3.0/hpiR/tests/testthat/test_3_hedonicmodel.R | 1976 +++++++-------- hpiR-0.3.0/hpiR/tests/testthat/test_4_analysis.R | 1410 +++++------ hpiR-0.3.0/hpiR/tests/testthat/test_5_viz.R | 271 +- hpiR-0.3.0/hpiR/tests/testthat/test_6_randomforest.R |only hpiR-0.3.0/hpiR/vignettes/classstructure.Rmd | 1250 ++++----- hpiR-0.3.0/hpiR/vignettes/introduction.Rmd | 1894 +++++++------- 101 files changed, 15923 insertions(+), 15324 deletions(-)
Title: General Purpose Interface to 'Elasticsearch'
Description: Connect to 'Elasticsearch', a 'NoSQL' database built on the 'Java'
Virtual Machine. Interacts with the 'Elasticsearch' 'HTTP' API
(<https://www.elastic.co/products/elasticsearch>), including functions for
setting connection details to 'Elasticsearch' instances, loading bulk data,
searching for documents with both 'HTTP' query variables and 'JSON' based body
requests. In addition, 'elastic' provides functions for interacting with API's
for 'indices', documents, nodes, clusters, an interface to the cat API, and
more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between elastic versions 1.0.0 dated 2019-04-11 and 1.1.0 dated 2020-01-11
DESCRIPTION | 20 +- LICENSE | 2 MD5 | 212 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 25 +++ R/Elasticsearch.R | 26 ++- R/Search_uri.R | 9 - R/alias.R | 5 R/bulk_ci_generator.R | 43 ++---- R/bulk_df_fun_generator.R | 5 R/cat.r | 1 R/count.r | 10 - R/docs_bulk.r | 81 ++++++----- R/docs_bulk_create.R | 12 - R/docs_bulk_delete.R | 76 ++++++----- R/docs_bulk_index.R | 17 +- R/docs_bulk_prep.R | 33 ++-- R/docs_bulk_update.R | 76 ++++++----- R/docs_bulk_utils.R | 60 +++++--- R/docs_create.R | 61 ++++---- R/docs_delete.R | 24 ++- R/docs_delete_by_query.R | 4 R/docs_get.r | 40 ++--- R/docs_mget.r | 96 +++++++------ R/docs_update.R | 68 +++++---- R/docs_update_by_query.R | 35 ++--- R/explain.R | 91 +++++++------ R/httr-verbs.R | 5 R/index.R | 43 +++++- R/index_templates.R | 4 R/ingest.R | 15 +- R/mapping.R | 67 ++++++--- R/msearch.R | 1 R/mtermvectors.R | 55 ++----- R/nodes.R | 1 R/percolater.R | 66 +++++++++ R/reindex.R | 1 R/scroll-http.R | 2 R/search.r | 6 R/tasks.R | 2 R/termvectors.R | 23 ++- R/tokenizer_set.R | 1 R/validate.R | 7 - R/zzz.r | 20 ++ README.md | 120 ++++++----------- build/vignette.rds |binary inst/examples/bar.json | 12 - inst/examples/foo.json | 12 - man/Search.Rd | 227 +++++++++++++++++++-------------- man/Search_template.Rd | 5 man/Search_uri.Rd | 114 ++++++++++------ man/alias.Rd | 18 +- man/cat.Rd | 203 +++++++++++++++++++++++------ man/cluster.Rd | 60 ++++++-- man/connect.Rd | 32 ++++ man/count.Rd | 13 - man/docs_bulk.Rd | 84 +++++++----- man/docs_bulk_create.Rd | 43 ++++-- man/docs_bulk_delete.Rd | 49 +++++-- man/docs_bulk_index.Rd | 45 ++++-- man/docs_bulk_prep.Rd | 56 ++++---- man/docs_bulk_update.Rd | 44 ++++-- man/docs_create.Rd | 43 ++++-- man/docs_delete.Rd | 34 +++- man/docs_delete_by_query.Rd | 28 +++- man/docs_get.Rd | 51 ++++--- man/docs_mget.Rd | 50 ++++--- man/docs_update.Rd | 50 ++++--- man/docs_update_by_query.Rd | 33 +++- man/elastic.Rd | 8 - man/es_parse.Rd | 42 ++---- man/explain.Rd | 95 ++++++++----- man/field_stats.Rd | 12 + man/index_template.Rd | 14 +- man/indices.Rd | 132 ++++++++++++++----- man/ingest.Rd | 12 - man/mapping.Rd | 69 ++++++---- man/msearch.Rd | 4 man/mtermvectors.Rd | 82 +++++------ man/nodes.Rd | 15 +- man/percolate.Rd | 95 ++++++++++++- man/reindex.Rd | 14 +- man/scroll.Rd | 13 + man/search_body.Rd | 11 + man/search_shards.Rd | 11 + man/tasks.Rd | 34 +++- man/termvectors.Rd | 38 ++++- man/validate.Rd | 4 tests/testthat/helper-elastic.R | 17 ++ tests/testthat/test-alias.R | 2 tests/testthat/test-cat.R | 2 tests/testthat/test-cluster.R | 2 tests/testthat/test-count.R | 7 - tests/testthat/test-docs.R | 128 ++++++++++++------ tests/testthat/test-docs_bulk.R | 150 +++++++++++++++------ tests/testthat/test-docs_bulk_update.R | 38 ++++- tests/testthat/test-explain.R | 3 tests/testthat/test-indices.R | 9 + tests/testthat/test-mappings.R | 71 +++++----- tests/testthat/test-msearch.R | 2 tests/testthat/test-mtermvectors.R | 2 tests/testthat/test-scroll.R | 2 tests/testthat/test-search.r | 21 +-- tests/testthat/test-search_template.R | 17 +- tests/testthat/test-search_uri.R | 11 + tests/testthat/test-termvectors.R | 4 tests/testthat/test-validate.R | 7 - 107 files changed, 2590 insertions(+), 1488 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-27 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-30 1.5.3
2018-10-25 1.5.2
2018-06-07 1.5.1
2018-05-06 1.5.0
2018-03-25 1.4.9
2018-03-12 1.4.8
2017-10-22 1.4.7
2017-05-26 1.4.6
2017-03-31 1.4.5
2017-03-14 1.4.4
2017-02-21 1.4.3
2016-10-13 1.4.2
2016-09-20 1.4.1
2016-08-27 1.4.0
2016-07-16 1.3.0
2016-06-30 1.2.2
2016-04-15 1.2.1
2016-04-11 1.2.0
2016-03-31 1.1.0
2016-02-03 1.0.9
2015-11-12 1.0.8
2015-10-27 1.0.6
2015-09-10 1.0.5