Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Diff between FactoMineR versions 2.0 dated 2019-11-25 and 2.1 dated 2020-01-17
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS |only R/HCPC.R | 27 +++++++++++++++------------ R/MFA.R | 2 +- R/PCA.R | 19 +++++++++++++------ R/plot.CA.R | 2 +- R/plot.HCPC.R | 6 ++++-- R/plot.PCA.R | 47 +++++++++++++++++++++++++++-------------------- 9 files changed, 73 insertions(+), 53 deletions(-)
Title: Statistical Modeling of Animal Movements
Description: Animal movement models including moving-resting process
with embedded Brownian motion according to
Yan et al. (2014) <doi:10.1007/s10144-013-0428-8>,
Pozdnyakov et al. (2017) <doi:10.1007/s11009-017-9547-6>,
Brownian motion with measurement error according to
Pozdnyakov et al. (2014) <doi:10.1890/13-0532.1>,
and moving-resting-handling process with embedded Brownian motion,
Pozdnyakov et al. (2018) <arXiv:1806.00849>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [aut],
Jun Yan [aut]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between smam versions 0.5.2 dated 2020-01-16 and 0.5.3 dated 2020-01-17
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 15 +++++---------- configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 4 ++-- src/MRME_approx.cpp | 10 +++++----- 7 files changed, 32 insertions(+), 37 deletions(-)
Title: Create Interactive Linked Charts with Minimal Code
Description: An easy-to-use tool to employ interactivity in every-day exploratory analysis. It contains
a collection of most commonly used types of charts (such as scatter plots, line plots, heatmaps, bar charts),
which can be linked to each other or to other interactive elements with just few lines of code.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between rlc versions 0.1.0 dated 2019-10-18 and 0.2.0 dated 2020-01-17
rlc-0.1.0/rlc/man/addDefaultLayout.Rd |only rlc-0.2.0/rlc/DESCRIPTION | 15 rlc-0.2.0/rlc/MD5 | 55 rlc-0.2.0/rlc/NAMESPACE | 8 rlc-0.2.0/rlc/NEWS.md |only rlc-0.2.0/rlc/R/lc.R | 2716 +++++++++++++--------- rlc-0.2.0/rlc/README.md | 11 rlc-0.2.0/rlc/inst/http_root/linked-charts.css | 3 rlc-0.2.0/rlc/inst/http_root/linked-charts.min.js | 2 rlc-0.2.0/rlc/inst/http_root/rlc.js | 28 rlc-0.2.0/rlc/man/LCApp.Rd |only rlc-0.2.0/rlc/man/chartEvent.Rd | 38 rlc-0.2.0/rlc/man/closePage.Rd | 5 rlc-0.2.0/rlc/man/dat.Rd | 6 rlc-0.2.0/rlc/man/getMarked.Rd | 19 rlc-0.2.0/rlc/man/getPage.Rd |only rlc-0.2.0/rlc/man/lc_bars.Rd | 62 rlc-0.2.0/rlc/man/lc_colourSlider.Rd | 27 rlc-0.2.0/rlc/man/lc_heatmap.Rd | 41 rlc-0.2.0/rlc/man/lc_hist.Rd | 48 rlc-0.2.0/rlc/man/lc_html.Rd | 29 rlc-0.2.0/rlc/man/lc_input.Rd | 41 rlc-0.2.0/rlc/man/lc_line.Rd | 133 - rlc-0.2.0/rlc/man/lc_scatter.Rd | 76 rlc-0.2.0/rlc/man/listCharts.Rd | 5 rlc-0.2.0/rlc/man/mark.Rd | 20 rlc-0.2.0/rlc/man/openPage.Rd | 61 rlc-0.2.0/rlc/man/removeChart.Rd | 10 rlc-0.2.0/rlc/man/removeLayer.Rd |only rlc-0.2.0/rlc/man/setProperties.Rd | 22 rlc-0.2.0/rlc/man/updateCharts.Rd | 40 31 files changed, 2108 insertions(+), 1413 deletions(-)
Title: Panel Generalized Linear Models
Description: Estimation of panel models for glm-like models: this includes binomial models (logit and probit) count models (poisson and negbin) and ordered models (logit and probit), as described in Baltagi (2013) Econometric Analysis of Panel Data, ISBN-13:978-1-118-67232-7,
Hsiao (2014) Analysis of Panel Data <doi:10.1017/CBO9781139839327> and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN:978-1-118-94918-4.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between pglm versions 0.2-1 dated 2017-11-02 and 0.2-2 dated 2020-01-17
DESCRIPTION | 18 +- MD5 | 22 +- NAMESPACE | 2 R/pglm.R | 46 ++--- R/start.R | 413 +++++++++++++++++++++++++-------------------------- data/Fairness.rda |binary data/HealthIns.rda |binary data/PatentsRD.rda |binary data/PatentsRDUS.rda |binary data/UnionWage.rda |binary man/PatentsRD.Rd | 2 man/UnionWage.Rd | 2 12 files changed, 250 insertions(+), 255 deletions(-)
Title: Functional Data Analysis and Partial Differential Equations;
Statistical Analysis of Functional and Spatial Data, Based on
Regression with Partial Differential Equation Regularization
Description: An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization.
Author: Eardi Lila [aut],
Laura M. Sangalli [aut],
Eleonora Arnone [aut, cre],
Jim Ramsay [aut],
Luca Formaggia [aut],
Alessandra Colli [ctb],
Luca Colombo [ctb],
Carlo de Falco [ctb]
Maintainer: Eleonora Arnone <eleonora.arnone@polimi.it>
Diff between fdaPDE versions 0.1-6 dated 2019-10-14 and 1.0 dated 2020-01-17
fdaPDE-0.1-6/fdaPDE/LICENSE.note |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.checkParameters.R |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.locator.R |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.objects.R |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.smoothing.R |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.smoothing_CPP.R |only fdaPDE-0.1-6/fdaPDE/R/fdaPDE.smoothing_R.R |only fdaPDE-0.1-6/fdaPDE/R/mesh.2D.R |only fdaPDE-0.1-6/fdaPDE/R/zzz.R |only fdaPDE-0.1-6/fdaPDE/data/MeuseBorder.rda |only fdaPDE-0.1-6/fdaPDE/data/MeuseData.rda |only fdaPDE-0.1-6/fdaPDE/data/mesh.2D.rectangular.rda |only fdaPDE-0.1-6/fdaPDE/data/mesh.2D.simple.rda |only fdaPDE-0.1-6/fdaPDE/man/MeuseBorder.Rd |only fdaPDE-0.1-6/fdaPDE/man/MeuseData.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_elementProperties.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_eval.FEM.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_eval.FEM.basis.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_mass.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_smooth.FEM.basis.Rd |only fdaPDE-0.1-6/fdaPDE/man/R_stiff.Rd |only fdaPDE-0.1-6/fdaPDE/man/create.MESH.2D.Rd |only fdaPDE-0.1-6/fdaPDE/man/mesh.2D.rectangular.Rd |only fdaPDE-0.1-6/fdaPDE/man/mesh.2D.simple.Rd |only fdaPDE-0.1-6/fdaPDE/man/plot.MESH2D.Rd |only fdaPDE-0.1-6/fdaPDE/man/refine.MESH.2D.Rd |only fdaPDE-0.1-6/fdaPDE/man/smooth.FEM.PDE.basis.Rd |only fdaPDE-0.1-6/fdaPDE/man/smooth.FEM.PDE.sv.basis.Rd |only fdaPDE-0.1-6/fdaPDE/man/smooth.FEM.basis.Rd |only fdaPDE-0.1-6/fdaPDE/tests |only fdaPDE-1.0/fdaPDE/DESCRIPTION | 45 fdaPDE-1.0/fdaPDE/MD5 | 139 +- fdaPDE-1.0/fdaPDE/NAMESPACE | 36 fdaPDE-1.0/fdaPDE/NEWS.md |only fdaPDE-1.0/fdaPDE/R/FEMevaluator.R |only fdaPDE-1.0/fdaPDE/R/FEMobjects.R |only fdaPDE-1.0/fdaPDE/R/checkFPCAParameters.R |only fdaPDE-1.0/fdaPDE/R/checkSmoothingParameters.R |only fdaPDE-1.0/fdaPDE/R/datasets.R | 125 +- fdaPDE-1.0/fdaPDE/R/deprecated.R |only fdaPDE-1.0/fdaPDE/R/mesh.R |only fdaPDE-1.0/fdaPDE/R/plot.R |only fdaPDE-1.0/fdaPDE/R/smoothFPCA.R |only fdaPDE-1.0/fdaPDE/R/smoothFPCA_CPP.R |only fdaPDE-1.0/fdaPDE/R/smoothing.R |only fdaPDE-1.0/fdaPDE/R/smoothing_CPP.R |only fdaPDE-1.0/fdaPDE/R/smoothing_manifold_CPP.R |only fdaPDE-1.0/fdaPDE/R/smoothing_volume_CPP.R |only fdaPDE-1.0/fdaPDE/R/testFunctions.R |only fdaPDE-1.0/fdaPDE/README.md |only fdaPDE-1.0/fdaPDE/data/horseshoe2D.RData |only fdaPDE-1.0/fdaPDE/data/hub2.5D.RData |only fdaPDE-1.0/fdaPDE/data/quasicircle2D.RData |only fdaPDE-1.0/fdaPDE/data/quasicircle2Dareal.RData |only fdaPDE-1.0/fdaPDE/man/FEM.Rd | 35 fdaPDE-1.0/fdaPDE/man/FPCA.FEM.Rd |only fdaPDE-1.0/fdaPDE/man/covs.test.Rd |only fdaPDE-1.0/fdaPDE/man/create.FEM.basis.Rd | 61 - fdaPDE-1.0/fdaPDE/man/create.mesh.2.5D.Rd |only fdaPDE-1.0/fdaPDE/man/create.mesh.2D.Rd |only fdaPDE-1.0/fdaPDE/man/eval.FEM.Rd | 53 fdaPDE-1.0/fdaPDE/man/fdaPDE-deprecated.Rd |only fdaPDE-1.0/fdaPDE/man/fs.test.Rd |only fdaPDE-1.0/fdaPDE/man/horseshoe2D.Rd |only fdaPDE-1.0/fdaPDE/man/hub2.5D.Rd |only fdaPDE-1.0/fdaPDE/man/image.FEM.Rd | 42 fdaPDE-1.0/fdaPDE/man/plot.FEM.Rd | 45 fdaPDE-1.0/fdaPDE/man/plot.mesh.2.5D.Rd |only fdaPDE-1.0/fdaPDE/man/plot.mesh.2D.Rd |only fdaPDE-1.0/fdaPDE/man/quasicircle2D.Rd |only fdaPDE-1.0/fdaPDE/man/quasicircle2Dareal.Rd |only fdaPDE-1.0/fdaPDE/man/refine.mesh.2D.Rd |only fdaPDE-1.0/fdaPDE/man/smooth.FEM.Rd |only fdaPDE-1.0/fdaPDE/src/FEMeval.cpp | 190 ++- fdaPDE-1.0/fdaPDE/src/FPCAData.h |only fdaPDE-1.0/fdaPDE/src/FPCAData_imp.h |only fdaPDE-1.0/fdaPDE/src/FPCAObject.h |only fdaPDE-1.0/fdaPDE/src/FPCAObject_imp.h |only fdaPDE-1.0/fdaPDE/src/Factory.h |only fdaPDE-1.0/fdaPDE/src/Proxy.h |only fdaPDE-1.0/fdaPDE/src/evaluator.h | 122 ++ fdaPDE-1.0/fdaPDE/src/evaluator_imp.h | 227 +++- fdaPDE-1.0/fdaPDE/src/fdaPDE.cpp | 645 +++++++---- fdaPDE-1.0/fdaPDE/src/fdaPDE.h | 8 fdaPDE-1.0/fdaPDE/src/finite_element.h | 157 ++ fdaPDE-1.0/fdaPDE/src/finite_element_imp.h | 250 ++++ fdaPDE-1.0/fdaPDE/src/integratePsi.h |only fdaPDE-1.0/fdaPDE/src/integration.cpp | 23 fdaPDE-1.0/fdaPDE/src/integration.h | 20 fdaPDE-1.0/fdaPDE/src/matrix_assembler.h | 326 +++-- fdaPDE-1.0/fdaPDE/src/matrix_assembler_imp.h | 248 +++- fdaPDE-1.0/fdaPDE/src/mesh.h | 312 ++++- fdaPDE-1.0/fdaPDE/src/mesh_imp.h | 418 ++++++- fdaPDE-1.0/fdaPDE/src/mesh_objects.cpp | 74 - fdaPDE-1.0/fdaPDE/src/mesh_objects.h | 386 +++++- fdaPDE-1.0/fdaPDE/src/mesh_objects_imp.h | 411 ++++++- fdaPDE-1.0/fdaPDE/src/mixedFEFPCA.h |only fdaPDE-1.0/fdaPDE/src/mixedFEFPCA_imp.h |only fdaPDE-1.0/fdaPDE/src/mixedFEFPCAfactory.h |only fdaPDE-1.0/fdaPDE/src/mixedFERegression.h | 181 +-- fdaPDE-1.0/fdaPDE/src/mixedFERegression_imp.h | 1162 +++++++++++---------- fdaPDE-1.0/fdaPDE/src/regressionData.h | 125 +- fdaPDE-1.0/fdaPDE/src/regressionData_imp.h | 110 + fdaPDE-1.0/fdaPDE/src/solver.h | 47 fdaPDE-1.0/fdaPDE/src/solverdefinitions.h |only fdaPDE-1.0/fdaPDE/src/timing.h |only 106 files changed, 4261 insertions(+), 1762 deletions(-)
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie, Astrid Monge, Francois Husson
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between Factoshiny versions 2.0 dated 2019-12-10 and 2.1 dated 2020-01-17
DESCRIPTION | 8 MD5 | 40 +-- R/HCPCshiny.R | 8 R/MFAshiny.R | 2 R/catdesshiny.R | 4 inst/FactoApp/server.R | 57 +++- inst/FactoApp/ui.R | 6 inst/FactoHCPCapp2/global.R | 16 + inst/FactoHCPCapp2/server.R | 398 +++++++++++++++++++++++++++++++-- inst/FactoHCPCapp2/ui.R | 43 +++ inst/FactoMCAapp2/global.R | 6 inst/FactoMCAapp2/server.R | 53 ++-- inst/FactoMCAapp2/ui.R | 1 inst/FactoMFAapp/global.R | 1 inst/FactoMFAapp/server.R | 78 ++++++ inst/FactoMFAapp/ui.R | 41 +++ inst/Factocatdesapp/server.R | 186 +++++---------- inst/Factocatdesapp/ui.R | 75 +----- inst/doc/Factoshiny.pdf |binary inst/po/fr/LC_MESSAGES/R-Factoshiny.mo |binary po/R-Fr.po | 71 +++++ 21 files changed, 816 insertions(+), 278 deletions(-)
Title: Quantize Floating-Point Numbers for Improved Compressibility
Description: Provides a implementation of floating-point quantization algorithms for use in precision-preserving
compression, similar to the approach taken in the 'netCDF operators' (NCO) software package and
described in Zender (2016) <doi:10.5194/gmd-2016-63>.
Author: Daniel Baston <dbaston@gmail.com>
Maintainer: Daniel Baston <dbaston@gmail.com>
Diff between bitsqueezr versions 0.1.0 dated 2019-01-30 and 0.1.1 dated 2020-01-17
DESCRIPTION | 10 ++++++---- MD5 | 7 ++++--- NEWS.md |only README.md | 10 ++++++++-- man/squeeze_bits.Rd | 6 +++++- 5 files changed, 23 insertions(+), 10 deletions(-)
Title: Selection of Samples and Parameter Estimation in Finite
Population
Description: Allows the user to draw probabilistic samples and make inferences from a finite population based on several sampling designs.
Author: Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>
Maintainer: Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>
Diff between TeachingSampling versions 3.6.0 dated 2019-11-18 and 4.0.1 dated 2020-01-17
DESCRIPTION | 14 +++++++------- MD5 | 22 ++++++++++++++-------- NAMESPACE | 7 +++++++ R/E.1SI.R |only R/E.STPPS.r | 10 +++++----- R/E.STpiPS.R | 4 ++-- R/E.Trim.R |only R/E.UC.R |only R/S.STSI.r | 2 +- R/S.STpiPS.R | 5 ++--- data/BigCity.RData |binary man/BigCity.Rd | 2 +- man/E.1SI.Rd |only man/E.Trim.Rd |only man/E.UC.Rd |only 15 files changed, 39 insertions(+), 27 deletions(-)
More information about TeachingSampling at CRAN
Permanent link
Title: Sample Size Calculations for Complex Surveys
Description: Computes the required sample size for estimation of totals, means
and proportions under complex sampling designs.
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>
Diff between samplesize4surveys versions 3.7.5.1 dated 2019-06-23 and 4.1.1 dated 2020-01-17
DESCRIPTION | 13 +-- MD5 | 150 ++++++++++++++++++------------------ NAMESPACE | 5 + R/DEFF.R | 2 R/ICC.R | 2 R/b4S2.R | 2 R/b4ddm.R | 2 R/b4ddp.R | 2 R/b4dm.R | 2 R/b4dp.R | 2 R/b4m.R | 2 R/b4p.R | 2 R/e4S2.R | 2 R/e4ddm.R | 2 R/e4ddp.R | 2 R/e4dm.R | 2 R/e4dp.R | 2 R/e4m.R | 2 R/e4p.R | 63 +++++++++------ R/ss2s4m.R | 88 ++++++++++++++------- R/ss2s4p.R | 57 ++++++------- R/ss4HHSm.R |only R/ss4HHSp.R |only R/ss4S2.R | 2 R/ss4S2H.R | 2 R/ss4ddm.R | 2 R/ss4ddmH.R | 2 R/ss4ddp.R | 2 R/ss4ddpH.R | 2 R/ss4dm.R | 2 R/ss4dmH.R | 2 R/ss4dp.R | 2 R/ss4dpH.R | 2 R/ss4m.R | 93 +++++++++++++--------- R/ss4mH.R | 2 R/ss4p.R | 98 ++++++++++++++--------- R/ss4pH.R | 2 R/ss4pLN.R | 2 R/ss4stm.R | 2 build/vignette.rds |binary inst/doc/Power-and-sample-size.R | 4 inst/doc/Power-and-sample-size.html | 13 +-- man/DEFF.Rd | 2 man/ICC.Rd | 2 man/b4S2.Rd | 5 - man/b4ddm.Rd | 22 ++++- man/b4ddp.Rd | 2 man/b4dm.Rd | 5 - man/b4dp.Rd | 2 man/b4m.Rd | 2 man/b4p.Rd | 2 man/e4S2.Rd | 2 man/e4ddm.Rd | 21 ++++- man/e4ddp.Rd | 2 man/e4dm.Rd | 5 - man/e4dp.Rd | 5 - man/e4m.Rd | 2 man/e4p.Rd | 4 man/ss2s4m.Rd | 64 +++++++++++---- man/ss2s4p.Rd | 38 ++++----- man/ss4HHSm.Rd |only man/ss4HHSp.Rd |only man/ss4S2.Rd | 5 - man/ss4S2H.Rd | 5 - man/ss4ddm.Rd | 23 ++++- man/ss4ddmH.Rd | 23 ++++- man/ss4ddp.Rd | 18 +++- man/ss4ddpH.Rd | 18 +++- man/ss4dm.Rd | 18 +++- man/ss4dmH.Rd | 18 +++- man/ss4dp.Rd | 16 +++ man/ss4dpH.Rd | 16 +++ man/ss4m.Rd | 30 ++++--- man/ss4mH.Rd | 5 - man/ss4p.Rd | 21 ++--- man/ss4pH.Rd | 2 man/ss4pLN.Rd | 2 man/ss4stm.Rd | 2 78 files changed, 661 insertions(+), 390 deletions(-)
More information about samplesize4surveys at CRAN
Permanent link
Title: Dynamic OpenAPI/Swagger Client
Description: Access services specified in OpenAPI (formerly Swagger) format.
It is not a code generator. Client is generated dynamically as a list of R
functions.
Author: Darko Bergant [aut, cre]
Maintainer: Darko Bergant <darko.bergant@gmail.com>
Diff between rapiclient versions 0.1.2 dated 2017-02-13 and 0.1.3 dated 2020-01-17
DESCRIPTION | 10 +- MD5 | 45 +++++---- NAMESPACE | 1 R/operations.R | 145 +++++++++++++++++++++++++++----- R/print.R | 36 +++++-- inst/extdata/sample_specs/petstore.yaml |only man/build_op_url.Rd | 1 man/default_arguments.Rd | 3 man/get_api.Rd | 7 - man/get_message_body.Rd | 22 +++- man/get_operation_definitions.Rd | 1 man/get_operations.Rd | 2 man/get_parameters.Rd | 1 man/get_schema_graphviz_dot.Rd | 5 - man/get_schema_structure.Rd | 1 man/get_schemas.Rd | 1 man/print.rapi_api.Rd | 1 man/print.rapi_operation.Rd | 1 man/print.rapi_schema_function.Rd | 1 man/print_wrap.Rd |only man/rapiclient-package.Rd | 4 man/result_handlers.Rd | 6 - tests/testthat/test_external_api.R | 26 +++++ tests/testthat/test_petstore_api.R | 6 + tests/testthat/test_post.R |only 25 files changed, 241 insertions(+), 85 deletions(-)
Title: R Tools for Data Copy-Pasta
Description: RStudio addins and R functions that make copy-pasting vectors and tables to text painless.
Author: Miles McBain [aut, cre] (<https://orcid.org/0000-0003-2865-2548>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
Mark Dulhunty [ctb],
Andrew Collier [ctb],
Sharla Gelfand [aut],
Suthira Owlarn [aut] (<https://orcid.org/0000-0002-3258-1415>),
Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>)
Maintainer: Miles McBain <miles.mcbain@gmail.com>
Diff between datapasta versions 3.0.0 dated 2018-01-24 and 3.1.0 dated 2020-01-17
datapasta-3.0.0/datapasta/R/df_paste.R |only datapasta-3.0.0/datapasta/man/df_construct.Rd |only datapasta-3.1.0/datapasta/DESCRIPTION | 38 datapasta-3.1.0/datapasta/MD5 | 63 - datapasta-3.1.0/datapasta/NAMESPACE | 7 datapasta-3.1.0/datapasta/NEWS.md | 17 datapasta-3.1.0/datapasta/R/clip.R |only datapasta-3.1.0/datapasta/R/dfdt_paste.R |only datapasta-3.1.0/datapasta/R/dfiddle.R | 9 datapasta-3.1.0/datapasta/R/dpasta.R | 6 datapasta-3.1.0/datapasta/R/tribble_paste.R | 204 ++- datapasta-3.1.0/datapasta/R/utils.R | 6 datapasta-3.1.0/datapasta/R/vector_paste.R | 39 datapasta-3.1.0/datapasta/README.md | 9 datapasta-3.1.0/datapasta/build/vignette.rds |binary datapasta-3.1.0/datapasta/inst/doc/datapasta-in-the-cloud.R |only datapasta-3.1.0/datapasta/inst/doc/datapasta-in-the-cloud.Rmd |only datapasta-3.1.0/datapasta/inst/doc/datapasta-in-the-cloud.html |only datapasta-3.1.0/datapasta/inst/doc/how-to-datapasta.Rmd | 12 datapasta-3.1.0/datapasta/inst/doc/how-to-datapasta.html | 573 ++++++---- datapasta-3.1.0/datapasta/inst/rstudio/addins.dcf | 7 datapasta-3.1.0/datapasta/man/custom_context.Rd | 8 datapasta-3.1.0/datapasta/man/df_format.Rd | 2 datapasta-3.1.0/datapasta/man/df_paste.Rd | 2 datapasta-3.1.0/datapasta/man/dfdt_construct.Rd |only datapasta-3.1.0/datapasta/man/dt_format.Rd |only datapasta-3.1.0/datapasta/man/dt_paste.Rd |only datapasta-3.1.0/datapasta/man/read_clip_tbl_guess.Rd | 2 datapasta-3.1.0/datapasta/man/tortellini.Rd | 8 datapasta-3.1.0/datapasta/tests/testthat/athletes.txt |only datapasta-3.1.0/datapasta/tests/testthat/escapes.txt |only datapasta-3.1.0/datapasta/tests/testthat/iso_dates.txt |only datapasta-3.1.0/datapasta/tests/testthat/non_valid_colnames.txt |only datapasta-3.1.0/datapasta/tests/testthat/test-clip.R |only datapasta-3.1.0/datapasta/tests/testthat/test_dfpaste.R | 111 + datapasta-3.1.0/datapasta/tests/testthat/test_dtpaste.R |only datapasta-3.1.0/datapasta/tests/testthat/test_rstudio.R | 1 datapasta-3.1.0/datapasta/tests/testthat/test_tribble.R | 107 + datapasta-3.1.0/datapasta/tests/testthat/test_vector.R | 47 datapasta-3.1.0/datapasta/vignettes/datapasta-in-the-cloud.Rmd |only datapasta-3.1.0/datapasta/vignettes/how-to-datapasta.Rmd | 12 41 files changed, 917 insertions(+), 373 deletions(-)
Title: Arrange Elements on the R's Drawing Area or Inside the
PowerPoint's Slide
Description: Create complicated drawing areas for multiple elements by combining much simpler layouts. It is an extended version of layout function from the 'graphics' package, but it also works with 'grid' graphics. It also supports arranging elements inside 'PowerPoint' slides created using the 'officer' package.
Author: Zygmunt Zawadzki [aut, cre]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between customLayout versions 0.3.0 dated 2018-10-31 and 0.3.1 dated 2020-01-17
DESCRIPTION | 13 MD5 | 68 - NAMESPACE | 6 R/asserts.R | 2 R/flextable.R | 5 R/officer.R | 85 - README.md | 4 build/vignette.rds |binary inst/doc/Roadmap.R | 2 inst/doc/Roadmap.html | 358 +++-- inst/doc/customlayout-cookbook.R | 6 inst/doc/customlayout-cookbook.html | 657 ++++++---- inst/doc/layouts-for-officer-power-point-document.R | 26 inst/doc/layouts-for-officer-power-point-document.html | 803 +++++++------ man/phl_layout.Rd | 16 man/phl_with_gg.Rd | 2 man/phl_with_table.Rd | 2 tests/figs/basic-bind-col.svg | 92 - tests/figs/basic-bind-row.svg | 92 - tests/figs/basic-grid-layout.svg | 642 +++++----- tests/figs/deps.txt | 8 tests/figs/reps-functions/rep-by-col.svg | 140 +- tests/figs/reps-functions/rep-by-row.svg | 140 +- tests/figs/split-field/basic-split-field-1.svg | 80 - tests/figs/split-field/basic-split-field-2.svg | 80 - tests/figs/split-field/basic-split-field-3.svg | 80 - tests/figs/split-field/basic-split-field-4.svg | 80 - tests/pptx/phl_with_flextable.pptx |binary tests/pptx/phl_with_gg.pptx |binary tests/pptx/phl_with_vg.pptx |binary tests/pptx/test_phl_with_flextable_large_tables_warns.pptx |binary tests/pptx/test_phl_with_table.pptx |binary tests/testthat.R | 160 ++ tests/testthat/test-flextable.R | 62 - tests/testthat/test-officer.R | 87 - 35 files changed, 2046 insertions(+), 1752 deletions(-)
Title: General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction; Evaluation of Failure-Time Surrogate Endpoints
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package:
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of the joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed.
5) Joint general frailty models in the context of the joint modelling for recurrent events with terminal event data with two independent frailty terms.
6) Joint Nested frailty models in the context of the joint modelling for recurrent events with terminal event, for hierarchically clustered data (with two levels of clustering) by including two iid gamma random effects.
7) Multivariate joint frailty models for two types of recurrent events and a terminal event.
8) Joint models for longitudinal data and a terminal event.
9) Trivariate joint models for longitudinal data, recurrent events and a terminal event.
10) Joint frailty models for the validation of surrogate endpoints in multiple randomized clinical trials with failure-time endpoints
11) Two-part joint model for longitudinal semicontinuous data and a terminal event.
Prediction values are available (for a terminal event or for a new recurrent event). Left-truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata are allowed. In each model, the random effects have the gamma or normal distribution. Now, you can also consider time-varying covariates effects in Cox, shared and joint frailty models (1-5). The package includes concordance measures for Cox proportional hazards models and for shared frailty models.
Moreover, the package can be used with its shiny application, in a local mode or by following the link below.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Amadou Diakite, Alexandre Laurent, Myriam Lopez,
Agnieszka Krol, Casimir L. Sofeu, Julien Dumerc, Denis Rustand
Maintainer: Virginie Rondeau <Virginie.Rondeau@inserm.fr>
Diff between frailtypack versions 3.1.0 dated 2020-01-16 and 3.1.0.1 dated 2020-01-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Makevars | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.1.1 dated 2019-09-13 and 1.1.2 dated 2020-01-17
sjlabelled-1.1.1/sjlabelled/R/to_label.R |only sjlabelled-1.1.1/sjlabelled/R/to_value.R |only sjlabelled-1.1.1/sjlabelled/man/get_term_labels.Rd |only sjlabelled-1.1.1/sjlabelled/man/reexports.Rd |only sjlabelled-1.1.2/sjlabelled/DESCRIPTION | 15 sjlabelled-1.1.2/sjlabelled/MD5 | 137 ++-- sjlabelled-1.1.2/sjlabelled/NAMESPACE | 25 sjlabelled-1.1.2/sjlabelled/NEWS.md | 23 sjlabelled-1.1.2/sjlabelled/R/add_labels.R | 45 - sjlabelled-1.1.2/sjlabelled/R/as_character.R |only sjlabelled-1.1.2/sjlabelled/R/as_factor.R | 23 sjlabelled-1.1.2/sjlabelled/R/as_label.R |only sjlabelled-1.1.2/sjlabelled/R/as_labelled.R | 1 sjlabelled-1.1.2/sjlabelled/R/as_numeric.R |only sjlabelled-1.1.2/sjlabelled/R/convert_case.R | 3 sjlabelled-1.1.2/sjlabelled/R/copy_labels.R | 12 sjlabelled-1.1.2/sjlabelled/R/drop_labels.R | 7 sjlabelled-1.1.2/sjlabelled/R/fill_labels.R | 4 sjlabelled-1.1.2/sjlabelled/R/get_label.R | 8 sjlabelled-1.1.2/sjlabelled/R/get_labels.R | 7 sjlabelled-1.1.2/sjlabelled/R/get_model_labels.R | 102 +-- sjlabelled-1.1.2/sjlabelled/R/get_na.R | 7 sjlabelled-1.1.2/sjlabelled/R/get_values.R | 9 sjlabelled-1.1.2/sjlabelled/R/helpfunctions.R | 21 sjlabelled-1.1.2/sjlabelled/R/label_to_colnames.R |only sjlabelled-1.1.2/sjlabelled/R/read.R | 23 sjlabelled-1.1.2/sjlabelled/R/remove_all_labels.R | 1 sjlabelled-1.1.2/sjlabelled/R/remove_label.R | 6 sjlabelled-1.1.2/sjlabelled/R/remove_labels.R | 11 sjlabelled-1.1.2/sjlabelled/R/select_helpers.R | 11 sjlabelled-1.1.2/sjlabelled/R/set_label.R | 3 sjlabelled-1.1.2/sjlabelled/R/set_labels.R | 15 sjlabelled-1.1.2/sjlabelled/R/set_na.R | 14 sjlabelled-1.1.2/sjlabelled/R/tidy_labels.R | 11 sjlabelled-1.1.2/sjlabelled/R/unlabel.R | 2 sjlabelled-1.1.2/sjlabelled/R/utils_get_dots.R |only sjlabelled-1.1.2/sjlabelled/R/val_labels.R | 9 sjlabelled-1.1.2/sjlabelled/R/var_labels.R | 11 sjlabelled-1.1.2/sjlabelled/R/write.R | 6 sjlabelled-1.1.2/sjlabelled/R/zap_labels.R | 18 sjlabelled-1.1.2/sjlabelled/build/vignette.rds |binary sjlabelled-1.1.2/sjlabelled/inst/doc/intro_sjlabelled.R | 65 +- sjlabelled-1.1.2/sjlabelled/inst/doc/intro_sjlabelled.Rmd | 1 sjlabelled-1.1.2/sjlabelled/inst/doc/intro_sjlabelled.html | 130 ++-- sjlabelled-1.1.2/sjlabelled/inst/doc/labelleddata.R | 16 sjlabelled-1.1.2/sjlabelled/inst/doc/labelleddata.html | 7 sjlabelled-1.1.2/sjlabelled/inst/doc/quasiquotation.R | 14 sjlabelled-1.1.2/sjlabelled/inst/doc/quasiquotation.html | 75 +- sjlabelled-1.1.2/sjlabelled/man/add_labels.Rd | 235 +++---- sjlabelled-1.1.2/sjlabelled/man/as_factor.Rd | 176 ++--- sjlabelled-1.1.2/sjlabelled/man/as_label.Rd | 376 ++++++------ sjlabelled-1.1.2/sjlabelled/man/as_labelled.Rd | 120 +-- sjlabelled-1.1.2/sjlabelled/man/as_numeric.Rd | 213 +++--- sjlabelled-1.1.2/sjlabelled/man/convert_case.Rd | 81 +- sjlabelled-1.1.2/sjlabelled/man/copy_labels.Rd | 122 ++- sjlabelled-1.1.2/sjlabelled/man/efc.Rd | 64 +- sjlabelled-1.1.2/sjlabelled/man/get_label.Rd | 174 ++--- sjlabelled-1.1.2/sjlabelled/man/get_labels.Rd | 269 ++++---- sjlabelled-1.1.2/sjlabelled/man/get_na.Rd | 122 +-- sjlabelled-1.1.2/sjlabelled/man/get_values.Rd | 122 +-- sjlabelled-1.1.2/sjlabelled/man/is_labelled.Rd | 34 - sjlabelled-1.1.2/sjlabelled/man/label_to_colnames.Rd |only sjlabelled-1.1.2/sjlabelled/man/read_spss.Rd | 191 +++--- sjlabelled-1.1.2/sjlabelled/man/remove_all_labels.Rd | 63 -- sjlabelled-1.1.2/sjlabelled/man/remove_label.Rd | 81 +- sjlabelled-1.1.2/sjlabelled/man/set_label.Rd | 239 +++---- sjlabelled-1.1.2/sjlabelled/man/set_labels.Rd | 407 ++++++------- sjlabelled-1.1.2/sjlabelled/man/set_na.Rd | 313 +++++---- sjlabelled-1.1.2/sjlabelled/man/term_labels.Rd |only sjlabelled-1.1.2/sjlabelled/man/tidy_labels.Rd | 109 +-- sjlabelled-1.1.2/sjlabelled/man/unlabel.Rd | 60 - sjlabelled-1.1.2/sjlabelled/man/write_spss.Rd | 58 - sjlabelled-1.1.2/sjlabelled/man/zap_labels.Rd | 281 ++++---- sjlabelled-1.1.2/sjlabelled/man/zap_na_tags.Rd | 89 +- sjlabelled-1.1.2/sjlabelled/vignettes/intro_sjlabelled.Rmd | 1 75 files changed, 2496 insertions(+), 2402 deletions(-)
Title: Read and Write 'SAS' 'XPORT' Files
Description: Functions for reading, listing
the contents of, and writing 'SAS' 'xport' format files.
The functions support reading and writing of either
individual data frames or sets of data frames. Further,
a mechanism has been provided for customizing how
variables of different data types are stored.
Author: Gregory R. Warnes <greg@warnes.net>
--
Unless otherwise noted, the contents of this package were written by
Gregory R. Warnes <greg@warnes.net> and are provided under the
terms of the GNU General Public License, version 2.0 or later.
--
The files 'src/ieee2ibm.c' and 'src/ibm2ieee.c' were extracted from
BRL-CAD file /brlcad/src/libbu/htond.c written by Michael John
Muuss, Copyright (c) 2004-2007 United States Government as
represented by the U.S. Army Research Laboratory, and is utilized
and redistributed under the terms of the GNU Lesser General Public
License, version 2.1.
--
The file 'R/read.xport.R' is adapted from the 'Hmisc' package created
by Frank E. Harrell, Jr. <f.harrell@vanderbilt.edu>, and is utilized
and redistributed under the terms of the GNU General Public License,
version 2.0 or later.
--
The files 'R/xport.R', 'src/SASxport.c', 'src/SASxport.h', and
'src/foreign.h' are copied or adapted from the 'R' 'foreign' package
created by Douglas M. Bates <bates@stat.wisc.edu> and Saikat DebRoy
<saikat@stat.wisc.edu>, and are utilized and redistributed under the
terms of the GNU General Public License, version 2.0 or later.
--
The creation of this package was partially funded by Metrum Institute
<http://metruminstitute.org>.
Maintainer: Gregory R. Warnes <greg@warnes.net>
Diff between SASxport versions 1.6.0 dated 2018-02-26 and 1.6.0.1 dated 2020-01-17
DESCRIPTION | 6 +- MD5 | 10 ++-- man/write.xport.Rd | 2 tests/testExamples.R | 2 tests/testExamples.Rout.save | 70 +++++++++++++++++----------------- tests/testUnnamedComponents.Rout.save | 56 +++++++++++++-------------- 6 files changed, 76 insertions(+), 70 deletions(-)
Title: Client for 'mapshaper' for 'Geospatial' Operations
Description: Edit and simplify 'geojson', 'Spatial', and 'sf' objects.
This is wrapper around the 'mapshaper' 'JavaScript' library by Matthew Bloch
<https://github.com/mbloch/mapshaper/> to perform topologically-aware
polygon simplification, as well as other operations such as clipping,
erasing, dissolving, and converting 'multi-part' to 'single-part' geometries.
It relies on the 'geojsonio' package for working with 'geojson' objects, the 'sf'
package for working with 'sf' objects, and the 'sp' and 'rgdal' packages for
working with 'Spatial' objects.
Author: Andy Teucher [aut, cre],
Kenton Russell [aut] (JavaScript support),
Matthew Bloch [cph] (mapshaper Javascript library)
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between rmapshaper versions 0.4.1 dated 2018-10-16 and 0.4.2 dated 2020-01-17
DESCRIPTION | 12 - MD5 | 54 ++++---- NEWS.md | 9 + R/clip_erase.R | 3 R/utils.R | 24 ++- README.md | 16 +- build/vignette.rds |binary inst/doc/rmapshaper.R | 18 +- inst/doc/rmapshaper.html | 192 ++++++++++++++++++----------- inst/mapshaper/mapshaper-browserify.min.js | 2 man/ms_clip.Rd | 16 +- man/ms_dissolve.Rd | 13 + man/ms_erase.Rd | 40 +++--- man/ms_explode.Rd | 12 - man/ms_filter_fields.Rd | 10 - man/ms_filter_islands.Rd | 30 ++-- man/ms_points.Rd | 32 ++-- man/ms_simplify.Rd | 18 ++ man/rmapshaper.Rd | 1 tests/testthat/test-dissolve.R | 1 tests/testthat/test-filter_fields.R | 1 tests/testthat/test-filter_islands.R | 8 - tests/testthat/test-innerlines.R | 12 - tests/testthat/test-lines.R | 17 +- tests/testthat/test-points.R | 24 +-- tests/testthat/test-simplify.R | 6 tests/testthat/test-utils.R | 16 ++ tools/readme/unnamed-chunk-4-1.png |binary 28 files changed, 364 insertions(+), 223 deletions(-)
Title: Handling Missing Values with Multivariate Data Analysis
Description: Imputation of incomplete continuous or categorical datasets; Missing values are imputed with a principal component analysis (PCA), a multiple correspondence analysis (MCA) model or a multiple factor analysis (MFA) model; Perform multiple imputation with and in PCA or MCA.
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between missMDA versions 1.15 dated 2019-11-20 and 1.16 dated 2020-01-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot.MIMCA.R | 13 ++++++------- R/plot.MIPCA.R | 8 ++++---- 4 files changed, 17 insertions(+), 18 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico Caeiro [ctb],
Stephane Champely [ctb],
Daniel Chessel [ctb],
Leanne Chhay [ctb],
Clint Cummins [ctb],
Michael Dewey [ctb],
Harold C. Doran [ctb],
Stephane Dray [ctb],
Charles Dupont [ctb],
Dirk Eddelbuettel [ctb],
Jeff Enos [ctb],
Claus Ekstrom [ctb],
Martin Elff [ctb],
Kamil Erguler [ctb],
Richard W. Farebrother [ctb],
John Fox [ctb],
Romain Francois [ctb],
Michael Friendly [ctb],
Tal Galili [ctb],
Matthias Gamer [ctb],
Joseph L. Gastwirth [ctb],
Yulia R. Gel [ctb],
Vilmantas Gegzna [ctb],
Juergen Gross [ctb],
Gabor Grothendieck [ctb],
Frank E. Harrell Jr [ctb],
Richard Heiberger [ctb],
Michael Hoehle [ctb],
Christian W. Hoffmann [ctb],
Soeren Hojsgaard [ctb],
Torsten Hothorn [ctb],
Markus Huerzeler [ctb],
Wallace W. Hui [ctb],
Pete Hurd [ctb],
Rob J. Hyndman [ctb],
Pablo J. Villacorta Iglesias [ctb],
Christopher Jackson [ctb],
Matthias Kohl [ctb],
Mikko Korpela [ctb],
Max Kuhn [ctb],
Detlew Labes [ctb],
Duncan Temple Lang [ctb],
Friederich Leisch [ctb],
Jim Lemon [ctb],
Dong Li [ctb],
Martin Maechler [ctb],
Arni Magnusson [ctb],
Daniel Malter [ctb],
George Marsaglia [ctb],
John Marsaglia [ctb],
Alina Matei [ctb],
David Meyer [ctb],
Weiwen Miao [ctb],
Giovanni Millo [ctb],
Yongyi Min [ctb],
David Mitchell [ctb],
Franziska Mueller [ctb],
Markus Naepflin [ctb],
Daniel Navarro [ctb],
Henric Nilsson [ctb],
Klaus Nordhausen [ctb],
Derek Ogle [ctb],
Hong Ooi [ctb],
Nick Parsons [ctb],
Sandrine Pavoine [ctb],
Tony Plate [ctb],
Roland Rapold [ctb],
William Revelle [ctb],
Tyler Rinker [ctb],
Brian D. Ripley [ctb],
Caroline Rodriguez [ctb],
Nathan Russell [ctb],
Nick Sabbe [ctb],
Venkatraman E. Seshan [ctb],
Greg Snow [ctb],
Michael Smithson [ctb],
Karline Soetaert [ctb],
Werner A. Stahel [ctb],
Alec Stephenson [ctb],
Mark Stevenson [ctb],
Ralf Stubner [ctb],
Matthias Templ [ctb],
Terry Therneau [ctb],
Yves Tille [ctb],
Luis Torgo [ctb],
Adrian Trapletti [ctb],
Joshua Ulrich [ctb],
Kevin Ushey [ctb],
Jeremy VanDerWal [ctb],
Bill Venables [ctb],
John Verzani [ctb],
Gregory R. Warnes [ctb],
Stefan Wellek [ctb],
Hadley Wickham [ctb],
Rand R. Wilcox [ctb],
Peter Wolf [ctb],
Daniel Wollschlaeger [ctb],
Joseph Wood [ctb],
Ying Wu [ctb],
Thomas Yee [ctb],
Achim Zeileis [ctb]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.31 dated 2019-12-02 and 0.99.32 dated 2020-01-17
DESCRIPTION | 12 +- MD5 | 42 +++++----- NAMESPACE | 8 + NEWS | 27 ++++++ R/Desc.R | 2 R/DescTools.r | 157 +++++++++++++++++++++++++++++-------- R/Imputation.R |only R/LinMod.R | 167 ++++++++++++++++++++++++++-------------- R/StatsAndCIs.r | 78 ++++++++++++------ build/vignette.rds |binary inst/doc/Combinatorics.pdf |binary inst/doc/DescToolsCompanion.pdf |binary inst/doc/TablesInR.pdf |binary man/CentralValue.Rd |only man/ColToHex.Rd | 5 - man/Divisors.Rd | 5 + man/KnnImputation.Rd |only man/PlotPairs.Rd | 4 man/Recode.Rd | 20 ++-- man/RgbOpaque.Rd |only man/TMod.Rd | 18 ++-- man/Untable.Rd | 3 man/WrdCellRange.Rd | 8 - man/WrdTableBorders.Rd | 5 - 24 files changed, 387 insertions(+), 174 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: CRAN Team [ctb] (de facto maintainer since 2013),
Duncan Temple Lang [aut, cre] (<https://orcid.org/0000-0003-0159-1546>),
Tomas Kalibera [ctb]
Maintainer: ORPHANED
Diff between XML versions 3.98-1.20 dated 2019-06-06 and 3.99-0.1 dated 2020-01-17
XML-3.98-1.20/XML/Bug.R |only XML-3.98-1.20/XML/Bugs |only XML-3.98-1.20/XML/Bugs.html |only XML-3.98-1.20/XML/Changes |only XML-3.98-1.20/XML/Check |only XML-3.98-1.20/XML/CodeDetails |only XML-3.98-1.20/XML/DESCRIPTION.in |only XML-3.98-1.20/XML/Docs |only XML-3.98-1.20/XML/FAQ.html |only XML-3.98-1.20/XML/FIXME_NOW |only XML-3.98-1.20/XML/GNUmakefile |only XML-3.98-1.20/XML/GNUmakefile.admin |only XML-3.98-1.20/XML/Makevars.in |only XML-3.98-1.20/XML/MemoryBug.R |only XML-3.98-1.20/XML/NAMESPACE.in |only XML-3.98-1.20/XML/NodeFuns |only XML-3.98-1.20/XML/Notes |only XML-3.98-1.20/XML/QuestionSolutions |only XML-3.98-1.20/XML/R/SAXMethods.S |only XML-3.98-1.20/XML/R/schema.S |only XML-3.98-1.20/XML/R/toString.S |only XML-3.98-1.20/XML/README.windows |only XML-3.98-1.20/XML/Rsamples |only XML-3.98-1.20/XML/TAGS |only XML-3.98-1.20/XML/Todo-orig.html |only XML-3.98-1.20/XML/Todo.xml |only XML-3.98-1.20/XML/VersionInfo |only XML-3.98-1.20/XML/addFinalizer |only XML-3.98-1.20/XML/checkLinks |only XML-3.98-1.20/XML/dotCalls |only XML-3.98-1.20/XML/expat |only XML-3.98-1.20/XML/index.html |only XML-3.98-1.20/XML/index.html.in |only XML-3.98-1.20/XML/inst/examples/itunes.xml |only XML-3.98-1.20/XML/inst/examples/yeast_small-01.xml |only XML-3.98-1.20/XML/libxml |only XML-3.98-1.20/XML/libxml2.9.R |only XML-3.98-1.20/XML/man/xmlFlatListTree.Rd |only XML-3.98-1.20/XML/scrapingData.xml |only XML-3.98-1.20/XML/src/SPlus |only XML-3.98-1.20/XML/testRemoveFinalizers.R |only XML-3.98-1.20/XML/testRemoveFinalizers.c |only XML-3.98-1.20/XML/xpathPointer.xml |only XML-3.99-0.1/XML/ChangeLog |only XML-3.99-0.1/XML/DESCRIPTION | 26 + XML-3.99-0.1/XML/LICENSE | 2 XML-3.99-0.1/XML/MD5 | 180 ++--------- XML-3.99-0.1/XML/NAMESPACE | 28 + XML-3.99-0.1/XML/R/SAXMethods.R |only XML-3.99-0.1/XML/R/XMLClasses.R | 218 +++++++------ XML-3.99-0.1/XML/R/flatTree.R | 52 +-- XML-3.99-0.1/XML/R/getRelativeURL.R | 16 XML-3.99-0.1/XML/R/nodeAccessors.R | 78 ++-- XML-3.99-0.1/XML/R/readHTMLTable.R | 32 - XML-3.99-0.1/XML/R/reflection.R | 87 ++++- XML-3.99-0.1/XML/R/schema.R |only XML-3.99-0.1/XML/R/toString.R |only XML-3.99-0.1/XML/R/version.R | 10 XML-3.99-0.1/XML/R/xmlEventParse.R | 70 ++-- XML-3.99-0.1/XML/R/xmlInternalSource.R | 167 +++++++--- XML-3.99-0.1/XML/R/xmlNodes.R | 299 +++++++++--------- XML-3.99-0.1/XML/R/xmlTreeParse.R | 36 +- XML-3.99-0.1/XML/inst/FAQ.html |only XML-3.99-0.1/XML/man/asXMLTreeNode.Rd | 5 XML-3.99-0.1/XML/man/getNodeSet.Rd | 52 ++- XML-3.99-0.1/XML/man/getRelativeURL.Rd | 5 XML-3.99-0.1/XML/man/getXIncludes.Rd | 3 XML-3.99-0.1/XML/man/makeClassTemplate.Rd | 4 XML-3.99-0.1/XML/man/replaceNodeWithChildren.Rd |only XML-3.99-0.1/XML/man/xmlClone.Rd | 3 XML-3.99-0.1/XML/man/xmlEventParse.Rd | 8 XML-3.99-0.1/XML/man/xmlHashTree.Rd |only XML-3.99-0.1/XML/man/xmlToS4.Rd | 4 XML-3.99-0.1/XML/src/DocParse.c | 8 XML-3.99-0.1/XML/src/EventParse.c | 14 XML-3.99-0.1/XML/src/EventParse.h | 2 XML-3.99-0.1/XML/src/RUtils.c | 7 XML-3.99-0.1/XML/src/Utils.h | 6 XML-3.99-0.1/XML/src/XMLEventParse.c | 15 XML-3.99-0.1/XML/src/XMLTree.c | 44 ++ XML-3.99-0.1/XML/src/schema.c | 2 XML-3.99-0.1/XML/src/xmlsecurity.c | 3 XML-3.99-0.1/XML/src/xpath.c | 343 ++++++++++++++++++++- 83 files changed, 1193 insertions(+), 636 deletions(-)
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe),
'let()'
(converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools:strmacro()' and 'base::bquote()'),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder),
and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.9.3 dated 2019-11-03 and 1.9.4 dated 2020-01-17
DESCRIPTION | 14 +-- MD5 | 156 ++++++++++++++++++------------------- NAMESPACE | 1 NEWS.md | 6 + R/bquotefn.R | 11 -- R/compare_frames.R | 26 +++++- R/run_package_tests.R | 2 R/stop_if_dot_args.R | 5 + README.md | 1 inst/doc/CornerCases.R | 4 inst/doc/CornerCases.html | 7 - inst/doc/DebugFnW.R | 16 +-- inst/doc/DebugFnW.html | 9 -- inst/doc/FrameTools.R | 20 ++-- inst/doc/FrameTools.html | 7 - inst/doc/Function_Objects.R | 26 +++--- inst/doc/Function_Objects.html | 7 - inst/doc/Named_Arguments.R | 2 inst/doc/Named_Arguments.html | 11 +- inst/doc/QuotingConcatinate.R | 14 +-- inst/doc/QuotingConcatinate.html | 7 - inst/doc/SubstitutionModes.R | 6 - inst/doc/SubstitutionModes.html | 7 - inst/doc/bquote.R | 14 +-- inst/doc/bquote.Rmd | 2 inst/doc/bquote.html | 23 ++--- inst/doc/dot_pipe.R | 8 - inst/doc/dot_pipe.html | 7 - inst/doc/lambda.R | 12 +- inst/doc/lambda.html | 16 +-- inst/doc/let.R | 10 +- inst/doc/let.html | 7 - inst/doc/named_map_builder.R | 6 - inst/doc/named_map_builder.html | 7 - inst/doc/wrapr_applicable.R | 10 +- inst/doc/wrapr_applicable.html | 7 - man/ApplyTo.Rd | 7 - man/VectorizeM.Rd | 9 +- man/apply_left.Collector.Rd | 10 +- man/apply_left.Rd | 10 +- man/apply_left.UnaryFn.Rd | 10 +- man/apply_left.default.Rd | 10 +- man/apply_left.locum.Rd | 10 +- man/apply_left_default.Rd | 10 +- man/apply_right.Rd | 10 +- man/apply_right.UnaryFn.Rd | 10 +- man/apply_right.default.Rd | 10 +- man/apply_right.locum.Rd | 10 +- man/apply_right_S4.Rd | 10 +- man/bquote_function.Rd | 8 - man/check_equiv_frames.Rd | 6 + man/clean_fit_glm.Rd | 15 ++- man/clean_fit_lm.Rd | 11 ++ man/draw_frame.Rd | 9 +- man/draw_framec.Rd | 3 man/execute_parallel.Rd | 11 ++ man/grepdf.Rd | 13 ++- man/grepv.Rd | 12 ++ man/let.Rd | 13 ++- man/map_to_char.Rd | 3 man/mk_formula.Rd | 13 ++- man/mk_tmp_name_source.Rd | 9 +- man/named_map_builder.Rd | 2 man/orderv.Rd | 9 +- man/partition_tables.Rd | 11 ++ man/pipe_impl.Rd | 3 man/qc.Rd | 3 man/returnCapture.Rd | 9 +- man/run_package_tests.Rd | 20 +++- man/run_wrapr_tests.Rd | 17 ++-- man/show-PartialFunction-method.Rd | 1 man/show-PartialNamedFn-method.Rd | 1 man/show-SrcFunction-method.Rd | 1 man/show-UnaryFnList-method.Rd | 1 man/sinterp.Rd | 13 ++- man/sortv.Rd | 10 +- man/strsplit_capture.Rd | 11 ++ man/wrapr.Rd | 1 vignettes/bquote.Rmd | 2 79 files changed, 532 insertions(+), 329 deletions(-)
Title: FWER and FDR Controlling Procedures for Multiple Correlation
Tests
Description: Different multiple testing procedures for correlation tests are implemented. These procedures were shown to theoretically control asymptotically the Family Wise Error Rate (Roux (2018) <https://tel.archives-ouvertes.fr/tel-01971574v1>) or the False Discovery Rate (Cai & Liu (2016) <doi:10.1080/01621459.2014.999157>). The package gather four test statistics used in correlation testing, four FWER procedures with either single step or stepdown versions, and four FDR procedures.
Author: Gannaz Irene [aut, cre],
Roux Marine [aut]
Maintainer: Gannaz Irene <irene.gannaz@insa-lyon.fr>
Diff between TestCor versions 0.0.1.0 dated 2019-07-06 and 0.0.1.1 dated 2020-01-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/FwerMethods.R | 4 ++-- R/FwerMethodsSD.R | 6 +++--- R/SimuFwer.R | 2 +- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Improved Standard Evaluation Interfaces for Common Data
Manipulation Tasks
Description: The 'seplyr' (standard evaluation plying) package supplies improved
standard evaluation adapter methods for important common 'dplyr' data manipulation tasks.
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), 'add_group_indices()' (which adds
per-group identifiers to a 'data.frame' without depending on row-order),
'partition_mutate_qt()' (which optimizes mutate sequences), and 'if_else_device()'
(which simulates per-row if-else blocks in expression sequences).
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.8.4 dated 2019-07-24 and 0.8.5 dated 2020-01-17
DESCRIPTION | 14 +-- MD5 | 58 ++++++++-------- NAMESPACE | 2 NEWS.md | 4 + R/group_mutate.R |only R/group_summarize.R | 2 R/group_transmute.R |only build/vignette.rds |binary inst/doc/MutatePartitioner.R | 8 +- inst/doc/MutatePartitioner.html | 63 +++++++++-------- inst/doc/named_map_builder.R | 10 +- inst/doc/named_map_builder.html | 13 ++- inst/doc/rename_se.R | 8 +- inst/doc/rename_se.html | 55 ++++++--------- inst/doc/seplyr.R | 12 +-- inst/doc/seplyr.html | 15 ++-- inst/doc/using_seplyr.R | 24 +++--- inst/doc/using_seplyr.html | 141 ++++++++++++++++++++-------------------- man/add_group_sub_indices.Rd | 10 ++ man/gather_se.Rd | 14 +++ man/group_mutate.Rd |only man/group_summarize.Rd | 20 ++++- man/group_transmute.Rd |only man/mutate_nse.Rd | 11 ++- man/mutate_se.Rd | 11 ++- man/reexports.Rd | 2 man/seplyr.Rd | 1 man/spread_se.Rd | 12 ++- man/summarize_nse.Rd | 6 - man/summarize_se.Rd | 6 - man/transmute_nse.Rd | 8 +- tests/testthat/test_basic.R | 23 ++++++ 32 files changed, 314 insertions(+), 239 deletions(-)
Title: Species Distribution Modelling
Description: An extensible framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time. For more information, please check the following paper:
Naimi, B., Araujo, M.B. (2016) <doi:10.1111/ecog.01881>.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.0-67 dated 2019-02-26 and 1.0-81 dated 2020-01-17
DESCRIPTION | 8 MD5 | 74 +- R/AAAClasses.R | 521 -------------------- R/ensemble.R | 1146 +++++++++++++++++++++++++++++++++++++-------- R/modelFrame.R | 6 R/plot.R | 78 ++- R/responseCurve.R | 51 +- R/sdm.R | 15 R/sdmData.R | 10 R/sdmFormula.R | 100 --- R/show.R | 10 R/varImp.R | 145 ++++- README.md | 7 build/vignette.rds |binary inst/methods/sdm/brt.R | 6 inst/methods/sdm/mlp.R | 10 man/add.Rd | 3 man/arithm.Rd | 4 man/boxplot.Rd | 3 man/calibration.Rd | 3 man/coordinates.Rd | 1 man/density.Rd | 3 man/ensemble.Rd | 41 + man/evaluates.Rd | 4 man/featuresFrame-class.Rd | 4 man/getModelInfo.Rd | 3 man/gui.Rd | 1 man/installAll.Rd | 2 man/niche.Rd | 4 man/predict.Rd | 4 man/read.sdm.Rd | 3 man/response.Rd | 3 man/roc.Rd | 4 man/sdm.Rd | 5 man/sdmData.Rd | 4 man/sdmSetting.Rd | 5 man/sdmdata-class.Rd | 5 man/varImportance.Rd | 2 38 files changed, 1364 insertions(+), 934 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy to remember set of tidy functions for exploratory data analysis. Introduces three main verbs. explore() to graphically explore a variable or table, describe() to describe a variable or table and report() to create an automated report.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 0.5.2 dated 2019-11-22 and 0.5.3 dated 2020-01-17
DESCRIPTION | 12 +- MD5 | 29 ++-- NAMESPACE | 3 NEWS.md | 12 ++ R/describe.R | 15 +- R/explore.R | 189 ++++++++++++++++++++++++------- R/report.R | 5 R/tools.R | 257 ++++++++++++++++++++++++++----------------- inst/doc/explore.html | 51 ++++---- inst/doc/explore_mtcars.html | 32 ++--- man/clean_var.Rd | 5 man/count_pct.Rd |only man/describe_all.Rd | 2 man/explore_bar.Rd | 6 - man/explore_targetpct.Rd |only man/figures/hex_explore.png |binary man/rescale01.Rd |only 17 files changed, 410 insertions(+), 208 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the function inventory to create a structure of directories and template scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>),
Daniel Schuch [ctb] (<https://orcid.org/0000-0001-5977-4519>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.8.0 dated 2019-09-17 and 0.8.5 dated 2020-01-17
vein-0.8.0/vein/man/emis_wrf-deprecated.Rd |only vein-0.8.0/vein/man/figures |only vein-0.8.0/vein/tests |only vein-0.8.5/vein/DESCRIPTION | 10 vein-0.8.5/vein/MD5 | 328 +++++++-------- vein-0.8.5/vein/NAMESPACE | 14 vein-0.8.5/vein/NEWS.md | 27 + vein-0.8.5/vein/R/EmissionFactors.R | 38 - vein-0.8.5/vein/R/EmissionFactorsList.R | 8 vein-0.8.5/vein/R/Emissions.R | 64 +- vein-0.8.5/vein/R/EmissionsArray.R | 88 ++-- vein-0.8.5/vein/R/EmissionsList.R | 80 --- vein-0.8.5/vein/R/Evaporative.R | 28 - vein-0.8.5/vein/R/GriddedEmissionsArray.R | 38 - vein-0.8.5/vein/R/Speed.R | 12 vein-0.8.5/vein/R/Vehicles.R | 27 - vein-0.8.5/vein/R/add_polid.R | 63 +- vein-0.8.5/vein/R/adt.R | 2 vein-0.8.5/vein/R/age.R | 25 - vein-0.8.5/vein/R/age_hdv.R | 8 vein-0.8.5/vein/R/age_ldv.R | 7 vein-0.8.5/vein/R/age_moto.R | 9 vein-0.8.5/vein/R/celsius.R | 5 vein-0.8.5/vein/R/cold_mileage.R | 2 vein-0.8.5/vein/R/ef_cetesb.R | 6 vein-0.8.5/vein/R/ef_china.R | 4 vein-0.8.5/vein/R/ef_evap.R | 24 - vein-0.8.5/vein/R/ef_fun.R | 2 vein-0.8.5/vein/R/ef_hdv_scaled.R | 2 vein-0.8.5/vein/R/ef_hdv_speed.R | 2 vein-0.8.5/vein/R/ef_im.R | 8 vein-0.8.5/vein/R/ef_ive.R | 2 vein-0.8.5/vein/R/ef_ldv_cold.R | 12 vein-0.8.5/vein/R/ef_ldv_cold_list.R | 2 vein-0.8.5/vein/R/ef_ldv_scaled.R | 2 vein-0.8.5/vein/R/ef_ldv_speed.R | 2 vein-0.8.5/vein/R/ef_nitro.R | 2 vein-0.8.5/vein/R/ef_wear.R | 6 vein-0.8.5/vein/R/ef_whe.R | 4 vein-0.8.5/vein/R/emis.R | 440 ++++++++++++++------ vein-0.8.5/vein/R/emis_chem.R | 44 +- vein-0.8.5/vein/R/emis_cold.R | 176 ++++---- vein-0.8.5/vein/R/emis_cold_td.R | 359 +++++++++++++--- vein-0.8.5/vein/R/emis_det.R | 4 vein-0.8.5/vein/R/emis_dist.R | 35 - vein-0.8.5/vein/R/emis_evap.R | 578 +++++++++++++-------------- vein-0.8.5/vein/R/emis_evap2.R | 33 - vein-0.8.5/vein/R/emis_grid.R | 58 ++ vein-0.8.5/vein/R/emis_hot_td.R | 555 ++++++++++++++++++++----- vein-0.8.5/vein/R/emis_order.R | 53 +- vein-0.8.5/vein/R/emis_paved.R | 12 vein-0.8.5/vein/R/emis_post.R | 20 vein-0.8.5/vein/R/emis_source.R | 13 vein-0.8.5/vein/R/emis_to_streets.R | 2 vein-0.8.5/vein/R/emis_wear.R | 114 ++--- vein-0.8.5/vein/R/emis_wrf.R | 114 ----- vein-0.8.5/vein/R/fuel_corr.R | 2 vein-0.8.5/vein/R/grid_emis.R | 193 +++------ vein-0.8.5/vein/R/invcop.R | 237 +++++------ vein-0.8.5/vein/R/inventory.R | 68 +-- vein-0.8.5/vein/R/long_to_wide.R | 13 vein-0.8.5/vein/R/make_grid.R | 4 vein-0.8.5/vein/R/matvect.R | 4 vein-0.8.5/vein/R/my_age.R | 6 vein-0.8.5/vein/R/netspeed.R | 23 - vein-0.8.5/vein/R/remove_units.R | 6 vein-0.8.5/vein/R/speciate.R | 13 vein-0.8.5/vein/R/split_emis.R | 5 vein-0.8.5/vein/R/st_explode.R |only vein-0.8.5/vein/R/temp_fact.R | 9 vein-0.8.5/vein/R/to_latex.R | 6 vein-0.8.5/vein/R/vein_notes.R | 2 vein-0.8.5/vein/R/vkm.R | 8 vein-0.8.5/vein/R/wide_to_long.R | 2 vein-0.8.5/vein/inst/README.Rmd | 28 - vein-0.8.5/vein/inst/README.html | 35 - vein-0.8.5/vein/man/EmissionFactors.Rd | 2 vein-0.8.5/vein/man/EmissionFactorsList.Rd | 2 vein-0.8.5/vein/man/Emissions.Rd | 15 vein-0.8.5/vein/man/EmissionsArray.Rd | 7 vein-0.8.5/vein/man/GriddedEmissionsArray.Rd | 20 vein-0.8.5/vein/man/Speed.Rd | 2 vein-0.8.5/vein/man/Vehicles.Rd | 3 vein-0.8.5/vein/man/add_polid.Rd | 19 vein-0.8.5/vein/man/adt.Rd | 2 vein-0.8.5/vein/man/age.Rd | 6 vein-0.8.5/vein/man/age_hdv.Rd | 2 vein-0.8.5/vein/man/age_ldv.Rd | 2 vein-0.8.5/vein/man/age_moto.Rd | 2 vein-0.8.5/vein/man/celsius.Rd | 5 vein-0.8.5/vein/man/cold_mileage.Rd | 2 vein-0.8.5/vein/man/ef_cetesb.Rd | 2 vein-0.8.5/vein/man/ef_china.Rd | 2 vein-0.8.5/vein/man/ef_evap.Rd | 18 vein-0.8.5/vein/man/ef_fun.Rd | 2 vein-0.8.5/vein/man/ef_hdv_scaled.Rd | 2 vein-0.8.5/vein/man/ef_hdv_speed.Rd | 2 vein-0.8.5/vein/man/ef_im.Rd | 2 vein-0.8.5/vein/man/ef_ive.Rd | 2 vein-0.8.5/vein/man/ef_ldv_cold.Rd | 2 vein-0.8.5/vein/man/ef_ldv_cold_list.Rd | 2 vein-0.8.5/vein/man/ef_ldv_scaled.Rd | 2 vein-0.8.5/vein/man/ef_ldv_speed.Rd | 2 vein-0.8.5/vein/man/ef_nitro.Rd | 2 vein-0.8.5/vein/man/ef_whe.Rd | 2 vein-0.8.5/vein/man/emis.Rd | 146 ++++-- vein-0.8.5/vein/man/emis_chem.Rd | 9 vein-0.8.5/vein/man/emis_cold.Rd | 40 + vein-0.8.5/vein/man/emis_cold_td.Rd | 69 ++- vein-0.8.5/vein/man/emis_det.Rd | 2 vein-0.8.5/vein/man/emis_dist.Rd | 4 vein-0.8.5/vein/man/emis_evap.Rd | 2 vein-0.8.5/vein/man/emis_evap2.Rd | 2 vein-0.8.5/vein/man/emis_grid.Rd | 19 vein-0.8.5/vein/man/emis_hot_td.Rd | 141 +++++- vein-0.8.5/vein/man/emis_order.Rd | 37 + vein-0.8.5/vein/man/emis_paved.Rd | 2 vein-0.8.5/vein/man/emis_post.Rd | 2 vein-0.8.5/vein/man/emis_to_streets.Rd | 2 vein-0.8.5/vein/man/emis_wear.Rd | 2 vein-0.8.5/vein/man/emis_wrf.Rd |only vein-0.8.5/vein/man/fuel_corr.Rd | 2 vein-0.8.5/vein/man/grid_emis.Rd | 29 - vein-0.8.5/vein/man/inventory.Rd | 10 vein-0.8.5/vein/man/long_to_wide.Rd | 6 vein-0.8.5/vein/man/make_grid.Rd | 2 vein-0.8.5/vein/man/my_age.Rd | 2 vein-0.8.5/vein/man/netspeed.Rd | 11 vein-0.8.5/vein/man/remove_units.Rd | 4 vein-0.8.5/vein/man/speciate.Rd | 2 vein-0.8.5/vein/man/split_emis.Rd | 2 vein-0.8.5/vein/man/st_explode.Rd |only vein-0.8.5/vein/man/temp_fact.Rd | 2 vein-0.8.5/vein/man/to_latex.Rd | 6 vein-0.8.5/vein/man/vein-deprecated.Rd | 25 - vein-0.8.5/vein/man/vein-package.Rd | 2 vein-0.8.5/vein/man/vein_notes.Rd | 2 vein-0.8.5/vein/man/vkm.Rd | 2 vein-0.8.5/vein/man/wide_to_long.Rd | 2 vein-0.8.5/vein/src |only 140 files changed, 2850 insertions(+), 2112 deletions(-)
Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other
'dplyr' inspired syntactic style when calculating summary statistics on survey
data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre],
Thomas Lumley [ctb],
Tomasz Żółtak [ctb],
Ben Schneider [ctb]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>
Diff between srvyr versions 0.3.6 dated 2019-10-05 and 0.3.7 dated 2020-01-17
DESCRIPTION | 10 MD5 | 71 ++--- NAMESPACE | 413 +++++++++++++++---------------- NEWS.md | 10 R/manip.r | 17 + R/subset_svy_vars.R | 2 R/survey_statistics.r | 18 - build/vignette.rds |binary inst/doc/extending-srvyr.R | 10 inst/doc/extending-srvyr.html | 261 ++++++++++--------- inst/doc/srvyr-database.R | 18 - inst/doc/srvyr-database.html | 385 +++++++++++++++------------- inst/doc/srvyr-vs-survey.R | 26 - inst/doc/srvyr-vs-survey.html | 273 +++++++++++--------- man/as_survey_design.Rd | 36 ++ man/as_survey_rep.Rd | 74 ++++- man/as_survey_twophase.Rd | 14 - man/as_tibble.Rd | 2 man/collect.Rd | 2 man/current_svy.Rd | 2 man/dplyr_single.Rd | 4 man/get_var_est.Rd | 11 man/pipe.Rd | 2 man/srvyr-se-deprecated.Rd | 56 +++- man/srvyr.Rd | 1 man/survey_mean.Rd | 16 - man/survey_quantile.Rd | 37 ++ man/survey_ratio.Rd | 14 - man/survey_tally.Rd | 21 + man/survey_total.Rd | 12 man/survey_var.Rd | 11 man/svychisq.Rd | 4 man/tbl_vars.Rd | 2 tests/testthat/test_as_survey_rep.r | 10 tests/testthat/test_as_survey_twophase.r | 8 tests/testthat/test_dplyr_verbs.R |only tests/testthat/test_survey_statistics.r | 60 +++- 37 files changed, 1101 insertions(+), 812 deletions(-)
Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling. Functions include models for species population density, download
utilities for climate and global deforestation spatial products, spatial
smoothing, multivariate separability, point process model for creating pseudo-
absences and sub-sampling, polygon and point-distance landscape metrics,
auto-logistic model, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>
Diff between spatialEco versions 1.2-1 dated 2019-10-03 and 1.3-0 dated 2020-01-17
DESCRIPTION | 23 +-- MD5 | 284 ++++++++++++++++++++----------------- NAMESPACE | 260 ++++++++++++++++++---------------- R/ClassStat.R |only R/PatchStat.R |only R/asc.from.raster.R |only R/concordance.R | 11 - R/connected.pixels.R |only R/crossCorrelation.R | 15 - R/download.prism.R | 4 R/explode.R |only R/focal.lmetrics.R | 7 R/grid.info.R |only R/knn.R | 90 ++++++++--- R/land.metrics.R | 21 +- R/nth.values.R |only R/overlap.R |only R/pseudo.absence.R | 3 R/random.raster.R | 4 R/sp.kde.R | 139 ++++++++---------- R/spatial.select.R |only R/spheroid.distance.R |only R/zonal.stats.R | 75 ++++----- inst/CITATION | 4 inst/NEWS | 21 ++ man/ClassStat.Rd |only man/DAYMET_tiles.Rd | 42 ++--- man/PatchStat.Rd |only man/annulus.matrix.Rd | 85 +++++------ man/ants.Rd | 48 +++--- man/asc.from.raster.Rd |only man/bearing.distance.Rd | 66 ++++---- man/breeding.density.Rd | 131 ++++++++--------- man/class.comparison.Rd | 187 ++++++++++++------------ man/classBreaks.Rd | 102 ++++++------- man/concordance.Rd | 93 +++++------- man/conf.interval.Rd | 106 ++++++------- man/connected.pixels.Rd |only man/correlogram.Rd | 113 +++++++------- man/crossCorrelation.Rd | 296 ++++++++++++++++++++------------------- man/csi.Rd | 116 +++++++-------- man/curvature.Rd | 155 ++++++++++---------- man/daymet.point.Rd | 105 +++++++------ man/daymet.tiles.Rd | 130 ++++++++--------- man/dispersion.Rd | 110 +++++++------- man/dissection.Rd | 72 ++++----- man/divergence.Rd | 64 ++++---- man/download.daymet.Rd | 164 +++++++++++---------- man/download.hansen.Rd | 156 ++++++++++---------- man/download.prism.Rd | 140 +++++++++--------- man/effect.size.Rd | 100 ++++++------- man/elev.Rd | 48 +++--- man/erase.point.Rd | 92 ++++++------ man/explode.Rd |only man/focal.lmetrics.Rd | 210 +++++++++++++-------------- man/fuzzySum.Rd | 66 ++++---- man/gaussian.kernel.Rd | 68 ++++---- man/grid.info.Rd |only man/group.pdf.Rd | 92 ++++++------ man/hexagons.Rd | 76 +++++----- man/hli.Rd | 80 +++++----- man/hsp.Rd | 98 ++++++------ man/hybrid.kmeans.Rd | 118 +++++++-------- man/idw.smoothing.Rd | 90 +++++------ man/insert.values.Rd | 80 +++++----- man/kde.2D.Rd | 28 +-- man/kendall.Rd | 145 ++++++++++--------- man/kl.divergence.Rd | 82 +++++----- man/knn.Rd | 146 +++++++++++-------- man/land.metrics.Rd | 273 ++++++++++++++++++----------------- man/local.min.max.Rd | 96 ++++++------ man/loess.boot.Rd | 148 +++++++++---------- man/loess.ci.Rd | 114 +++++++-------- man/logistic.regression.Rd | 266 ++++++++++++++++++----------------- man/moments.Rd | 120 +++++++-------- man/morans.plot.Rd | 167 +++++++++++----------- man/mwCorr.Rd | 28 +-- man/nni.Rd | 88 +++++------ man/nth.values.Rd |only man/o.ring.Rd | 82 +++++----- man/oli.asw.Rd | 142 +++++++++--------- man/optimal.k.Rd | 111 +++++++------- man/optimized.sample.variance.Rd | 136 ++++++++--------- man/outliers.Rd | 80 +++++----- man/overlap.Rd |only man/parea.sample.Rd | 111 +++++++------- man/parse.bits.Rd | 140 +++++++++--------- man/plot.effect.size.Rd | 38 ++--- man/plot.loess.boot.Rd | 72 ++++----- man/point.in.poly.Rd | 202 +++++++++++++------------- man/poly.regression.Rd | 149 ++++++++++--------- man/polyPerimeter.Rd | 60 +++---- man/pp.subsample.Rd | 165 +++++++++++---------- man/print.cross.cor.Rd | 32 ++-- man/print.effect.size.Rd | 32 ++-- man/print.loess.boot.Rd | 32 ++-- man/proximity.index.Rd | 129 ++++++++-------- man/pseudo.absence.Rd | 236 ++++++++++++++++--------------- man/pu.Rd | 128 ++++++++-------- man/random.raster.Rd | 152 ++++++++++---------- man/raster.Zscore.Rd | 88 +++++------ man/raster.change.Rd | 213 ++++++++++++++-------------- man/raster.deviation.Rd | 105 ++++++------- man/raster.downscale.Rd | 115 ++++++++------- man/raster.entropy.Rd | 118 ++++++++------- man/raster.gaussian.smooth.Rd | 104 ++++++------- man/raster.invert.Rd | 74 ++++----- man/raster.kendall.Rd | 142 +++++++++--------- man/raster.mds.Rd | 108 +++++++------- man/raster.modifed.ttest.Rd | 191 +++++++++++++------------ man/raster.modified.ttest.Rd | 191 +++++++++++++------------ man/raster.moments.Rd | 86 +++++------ man/raster.transformation.Rd | 110 +++++++------- man/raster.vol.Rd | 118 +++++++-------- man/rasterCorrelation.Rd | 89 +++++------ man/remove.holes.Rd | 74 ++++----- man/sa.trans.Rd | 121 ++++++++------- man/sample.annulus.Rd | 100 ++++++------- man/sample.line.Rd | 164 +++++++++++---------- man/sample.poly.Rd | 84 +++++------ man/sampleTransect.Rd | 80 +++++----- man/sar.Rd | 74 ++++----- man/se.news.Rd | 28 +-- man/separability.Rd | 158 ++++++++++---------- man/sg.smooth.Rd | 148 +++++++++---------- man/shannons.Rd | 98 ++++++------ man/shift.Rd | 64 ++++---- man/similarity.Rd | 126 ++++++++-------- man/smooth.time.series.Rd | 110 +++++++------- man/sobal.Rd | 92 ++++++------ man/sp.kde.Rd | 166 ++++++++++++--------- man/sp.na.omit.Rd | 94 ++++++------ man/spatial.select.Rd |only man/spherical.sd.Rd | 130 ++++++++--------- man/spheroid.distance.Rd |only man/srr.Rd | 74 ++++----- man/stratified.random.Rd | 150 +++++++++---------- man/subsample.distance.Rd | 143 +++++++++--------- man/summary.cross.cor.Rd | 32 ++-- man/summary.effect.size.Rd | 32 ++-- man/summary.loess.boot.Rd | 32 ++-- man/swvi.Rd | 213 ++++++++++++++-------------- man/topo.distance.Rd | 130 ++++++++--------- man/tpi.Rd | 101 ++++++------- man/trasp.Rd | 72 ++++----- man/trend.line.Rd | 86 +++++------ man/tri.Rd | 124 ++++++++-------- man/vrm.Rd | 80 +++++----- man/winsorize.Rd | 107 +++++++------- man/wt.centroid.Rd | 86 +++++------ man/zonal.stats.Rd | 130 ++++++++--------- src |only 152 files changed, 7138 insertions(+), 6807 deletions(-)
Title: Shadow-Test Approach to Computerized Adaptive Testing
Description: As an advanced approach to computerized adaptive testing (CAT),
shadow testing (van der Linden(2005) <doi:10.1007/0-387-29054-0>) dynamically
assembles entire shadow tests as a part of
selecting items throughout the testing process.
Selecting items from shadow tests guarantees the compliance of all content
constraints defined by the blueprint. 'RSCAT' is an R package for the
shadow-test approach to CAT. The objective of
'RSCAT' is twofold: 1) Enhancing the effectiveness of shadow-test CAT simulation;
2) Contributing to the academic and scientific community for CAT research.
Author: Bingnan Jiang [aut, cre],
ACT, Inc. [cph]
Maintainer: Bingnan Jiang <bnjiangece@gmail.com>
Diff between RSCAT versions 1.0.0 dated 2019-04-12 and 1.1.0 dated 2020-01-17
RSCAT-1.0.0/RSCAT/inst/java/RSCAT-1.0.0.jar |only RSCAT-1.0.0/RSCAT/java/src/main/java/org/act/cat/ScoringMethodConfig.java |only RSCAT-1.1.0/RSCAT/DESCRIPTION | 8 RSCAT-1.1.0/RSCAT/MD5 | 123 - RSCAT-1.1.0/RSCAT/NAMESPACE | 1 RSCAT-1.1.0/RSCAT/R/SimResult.R | 6 RSCAT-1.1.0/RSCAT/R/configClasses.R | 3 RSCAT-1.1.0/RSCAT/R/runSim.R | 11 RSCAT-1.1.0/RSCAT/R/shinyAppServer.R | 3 RSCAT-1.1.0/RSCAT/R/shinyAppUI.R | 3 RSCAT-1.1.0/RSCAT/R/utilFunctions.R | 26 RSCAT-1.1.0/RSCAT/README.md | 11 RSCAT-1.1.0/RSCAT/inst/java/RSCAT-1.1.0.jar |only RSCAT-1.1.0/RSCAT/java/pom.xml | 180 - RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/AbstractScoringMethodConfig.java |only RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatConfig.java | 10 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatConfigStandard.java | 16 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatEngine.java | 121 - RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatEngineStandard.java | 35 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatFunctions.java | 563 ++-- RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatHelper.java | 8 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatInputStandard.java | 2 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/CatItemsToAdminister.java | 4 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/EBIMethod.java |only RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ExposureControlData.java | 2 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ExposureControlFunctions.java | 55 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ItemScores.java | 6 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ItemSelectionMethod.java |only RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ItemSelectionMethodFactory.java |only RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/MaxFisherInformationMethod.java |only RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/PassageOrItemEligibilityOverall.java | 2 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ScoringMethodConfigEap.java | 2 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ScoringMethodEap.java | 10 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/cat/ThetaRange.java | 9 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/mip/SolverOutput.java | 15 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/sim/CatSimulationStandard.java | 10 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/sim/CatSimulationTaskStandard.java | 21 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/sol/ShadowTestRun.java | 7 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/sol/TestAssembly.java | 81 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/testdef/Item.java | 8 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/testdef/Passage.java | 240 +- RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/ContentTable.java | 18 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/CsvUtils.java | 24 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/ProbDistribution.java | 4 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/RHelper.java | 34 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/UniDimNormalDistribution.java | 2 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/UniDimUniformDistribution.java | 4 RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/Xprm.java | 198 - RSCAT-1.1.0/RSCAT/java/src/main/java/org/act/util/package-info.java | 8 RSCAT-1.1.0/RSCAT/java/src/main/resources/org/act/mosel/shadow_test.mos | 1153 +++++----- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/InfeasibleSimTest.java | 247 +- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimTest720ItemsEBITest.java |only RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimTest720ItemsEcNoConstTest.java | 303 +- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimTest720ItemsEcTest.java | 470 ++-- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimTest720ItemsTest.java | 436 +-- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimpleSimTest.java | 233 +- RSCAT-1.1.0/RSCAT/java/src/test/java/org/act/sim/SimpleSimTestWithEcTest.java | 243 +- RSCAT-1.1.0/RSCAT/man/CATConfig-class.Rd | 2 RSCAT-1.1.0/RSCAT/man/SimConfig-class.Rd | 54 RSCAT-1.1.0/RSCAT/man/SimResult-class.Rd | 98 RSCAT-1.1.0/RSCAT/man/launchApp.Rd | 30 RSCAT-1.1.0/RSCAT/man/result2CSV.Rd | 32 RSCAT-1.1.0/RSCAT/man/runSim.Rd | 132 - RSCAT-1.1.0/RSCAT/man/scoreMethodConfig.Rd | 57 RSCAT-1.1.0/RSCAT/man/shinyAppServer.Rd | 36 RSCAT-1.1.0/RSCAT/man/shinyAppUI.Rd | 26 RSCAT-1.1.0/RSCAT/man/summary-SimResult-method.Rd | 29 67 files changed, 2728 insertions(+), 2747 deletions(-)
Title: Rolling Statistics
Description: Fast and efficient computation of rolling statistics for time-series data.
Author: Jason Foster
Maintainer: Jason Foster <jason.j.foster@gmail.com>
Diff between roll versions 1.1.3 dated 2019-10-04 and 1.1.4 dated 2020-01-17
DESCRIPTION | 10 - MD5 | 54 ++--- NEWS.md | 20 +- README.md | 6 build/partial.rdb |binary man/roll-package.Rd | 2 man/roll_all.Rd | 82 ++++---- man/roll_any.Rd | 82 ++++---- man/roll_cor.Rd | 121 ++++++------ man/roll_cov.Rd | 121 ++++++------ man/roll_idxmax.Rd | 93 +++++---- man/roll_idxmin.Rd | 93 +++++---- man/roll_lm.Rd | 118 ++++++----- man/roll_max.Rd | 93 +++++---- man/roll_mean.Rd | 93 +++++---- man/roll_median.Rd | 93 +++++---- man/roll_min.Rd | 93 +++++---- man/roll_prod.Rd | 93 +++++---- man/roll_scale.Rd | 128 ++++++------- man/roll_sd.Rd | 109 +++++------ man/roll_sum.Rd | 93 +++++---- man/roll_var.Rd | 109 +++++------ src/roll.cpp | 423 +++++++++++++++++++++---------------------- src/roll_mat.h | 405 +++++++++++++++-------------------------- src/roll_vec.h | 327 ++++++++++++--------------------- tests/testthat/helper-roll.R | 4 tests/testthat/test-roll.R | 70 +++---- tests/testthat/test-zoo.R | 62 +++--- 28 files changed, 1471 insertions(+), 1526 deletions(-)
Title: Control the Number of Threads on 'BLAS'
Description: Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL').
And possible to control the number of threads in 'OpenMP'.
Get a number of logical cores and physical cores if feasible.
Author: Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama <nakama@ki.rim.or.jp>
Maintainer: Ei-ji Nakama <nakama@ki.rim.or.jp>
Diff between RhpcBLASctl versions 0.18-205 dated 2018-07-24 and 0.20-17 dated 2020-01-17
ChangeLog | 6 ++++++ DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- configure | 35 ----------------------------------- configure.ac | 33 --------------------------------- man/RhpcBLASctl-package.Rd | 30 +++++++++++++++++++++--------- src/Makevars.in | 4 ++-- src/blasctl.c | 18 ++++++++---------- src/blasctl.h | 2 +- 9 files changed, 51 insertions(+), 103 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>),
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.4.0 dated 2020-01-14 and 0.4.1 dated 2020-01-17
DESCRIPTION | 13 +- MD5 | 138 ++++++++++++++--------------- NAMESPACE | 2 NEWS.md | 6 + R/bootstrap_model.R | 2 R/check_clusterstructure.R | 2 R/describe_distribution.R | 2 R/factor_analysis.R | 2 R/format_algorithm.R | 2 R/format_bf.R | 2 R/format_model.R | 2 R/format_parameters.R | 2 R/format_pd.R | 2 R/format_rope.R | 2 R/model_parameters.BFBayesFactor.R | 2 R/model_parameters.BayesFM.R | 4 R/model_parameters.aov.R | 4 R/model_parameters.bayesian.R | 4 R/model_parameters.htest.R | 4 R/model_parameters.kmeans.R | 2 R/model_parameters.lavaan.R | 4 R/model_parameters.psych.R | 2 R/model_parameters.zeroinfl.R | 4 R/model_parameters_default.R | 2 R/model_parameters_mixed.R | 4 R/n_clusters.R | 2 R/n_factors.R | 4 R/n_parameters.R | 2 R/parameters_table.R | 6 - R/parameters_type.R | 4 R/principal_components.R | 2 R/reduce_parameters.R | 12 -- R/select_parameters.R | 81 ----------------- R/simulate_model.R | 2 R/simulate_parameters.R | 2 R/standard_error.R | 2 build/partial.rdb |binary man/bootstrap_model.Rd | 2 man/check_clusterstructure.Rd | 2 man/describe_distribution.Rd | 2 man/factor_analysis.Rd | 2 man/format_algorithm.Rd | 4 man/format_bf.Rd | 4 man/format_model.Rd | 4 man/format_parameters.Rd | 4 man/format_pd.Rd | 4 man/format_rope.Rd | 4 man/model_parameters.BFBayesFactor.Rd | 2 man/model_parameters.aov.Rd | 4 man/model_parameters.befa.Rd | 4 man/model_parameters.default.Rd | 2 man/model_parameters.htest.Rd | 4 man/model_parameters.kmeans.Rd | 2 man/model_parameters.lavaan.Rd | 4 man/model_parameters.merMod.Rd | 4 man/model_parameters.principal.Rd | 2 man/model_parameters.stanreg.Rd | 4 man/model_parameters.zeroinfl.Rd | 4 man/n_clusters.Rd | 2 man/n_factors.Rd | 4 man/n_parameters.Rd | 2 man/parameters_table.Rd | 8 - man/parameters_type.Rd | 6 - man/principal_components.Rd | 2 man/reduce_parameters.Rd | 11 -- man/select_parameters.Rd | 11 -- man/simulate_model.Rd | 2 man/simulate_parameters.Rd | 2 man/standard_error.Rd | 2 tests/testthat/test-parameters_selection.R | 16 +-- 70 files changed, 183 insertions(+), 287 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modality diagnosis for Gaussian
mixtures. For an overview see package?fpc.
Author: Christian Hennig <christian.hennig@unibo.it>
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-3 dated 2019-06-28 and 2.2-4 dated 2020-01-17
fpc-2.2-3/fpc/R/cquality18.R |only fpc-2.2-4/fpc/DESCRIPTION | 8 fpc-2.2-4/fpc/MD5 | 42 - fpc-2.2-4/fpc/R/addclustermethods.R | 2 fpc-2.2-4/fpc/R/clusterboot.R | 6 fpc-2.2-4/fpc/R/cquality19.R |only fpc-2.2-4/fpc/R/fpc.R | 2 fpc-2.2-4/fpc/R/lcmixed.R | 2 fpc-2.2-4/fpc/man/cgrestandard.Rd | 14 fpc-2.2-4/fpc/man/clusterbenchstats.Rd | 31 fpc-2.2-4/fpc/man/clusterboot.Rd | 2 fpc-2.2-4/fpc/man/extract.mixturepars.Rd | 12 fpc-2.2-4/fpc/man/fpc-package.Rd | 10 fpc-2.2-4/fpc/man/kmeansCBI.Rd | 2 fpc-2.2-4/fpc/man/plot.valstat.Rd | 35 - fpc-2.2-4/fpc/man/randomclustersim.Rd | 51 + fpc-2.2-4/fpc/man/stupidkaven.Rd |only fpc-2.2-4/fpc/man/stupidkcentroids.Rd | 8 fpc-2.2-4/fpc/man/stupidkfn.Rd |only fpc-2.2-4/fpc/man/stupidknn.Rd | 8 fpc-2.2-4/fpc/man/valstat.object.Rd | 7 fpc-2.2-4/fpc/tests/Examples/fpc-Ex.Rout.save | 775 ++++++++++++------------ fpc-2.2-4/fpc/tests/fpctests_notallin.R | 7 fpc-2.2-4/fpc/tests/fpctests_notallin.Rout.save | 171 ++--- 24 files changed, 641 insertions(+), 554 deletions(-)
Title: Feature Extraction And Statistics for Time Series
Description: Provides a collection of features, decompositions, statistical
summaries and graphics functions for the analysing tidy time series data.
The package name 'feasts' is an acronym comprising of its key features:
Feature Extraction And Statistics for Time Series.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
Thiyanga Talagala [ctb] (Correlation features),
Leanne Chhay [ctb] (Guerrero's method)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between feasts versions 0.1.1 dated 2019-09-02 and 0.1.2 dated 2020-01-17
DESCRIPTION | 14 +-- MD5 | 90 ++++++++++---------- NAMESPACE | 19 +++- NEWS.md | 25 +++++ R/acf.R | 3 R/classical.R | 46 +++++++--- R/feasts.R | 2 R/features.R | 29 ++++-- R/graphics.R | 143 +++++++++++++++++---------------- R/seats.R | 32 +++++-- R/stl.R | 39 ++++++--- R/utils.R | 120 +++++++++++++++++++++++++++ R/x11.R | 34 ++++++- README.md | 64 +++++++------- build/vignette.rds |binary inst/doc/feasts.R | 32 +++---- inst/doc/feasts.Rmd | 6 - inst/doc/feasts.html | 80 +++++++++--------- man/ACF.Rd | 9 +- man/STL.Rd | 8 - man/classical_decomposition.Rd | 21 ++-- man/feasts-package.Rd | 2 man/feat_spectral.Rd | 4 man/figures/README-dcmp-plot-1.png |binary man/figures/README-extreme-1.png |binary man/figures/README-features-plot-1.png |binary man/figures/README-graphics-1.png |binary man/figures/README-graphics-2.png |binary man/figures/README-graphics-3.png |binary man/figures/README-graphics-4.png |binary man/gg_lag.Rd | 15 +++ man/gg_season.Rd | 12 ++ man/gg_tsdisplay.Rd | 13 ++- man/n_crossing_points.Rd | 3 man/reexports.Rd | 2 man/stat_arch_lm.Rd | 3 man/unitroot.Rd | 12 +- man/unitroot_ndiffs.Rd | 20 +++- tests/testthat/Rplots.pdf |binary tests/testthat/test-classical.R | 4 tests/testthat/test-features.R | 11 +- tests/testthat/test-graphics.R | 8 - tests/testthat/test-seats.R | 14 +-- tests/testthat/test-stl.R | 6 - tests/testthat/test-x11.R | 12 +- vignettes/feasts.Rmd | 6 - 46 files changed, 639 insertions(+), 324 deletions(-)
Title: Copula-Based Estimation and Statistical Process Control for
Serially Correlated Time Series
Description: Estimation and statistical process control are performed under
copula-based time-series models.
Available are statistical methods in Long and Emura (2014 JCSA),
Emura et al. (2017 Commun Stat-Simul) <DOI:10.1080/03610918.2015.1073303>,
Huang and Emura (2019 Commun Stat-Simul) <DOI:10.1080/03610918.2019.1602647> and Huang, Chen and Emura (2019-, in revision).
Author: Takeshi Emura, Xinwei Huang, Weiru Chen, Ting-Hsuan Long
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.Markov versions 2.6 dated 2020-01-08 and 2.7 dated 2020-01-17
DESCRIPTION | 8 MD5 | 16 - R/Clayton.Markov.GOF.R | 6 R/Clayton.Markov.GOF.binom.R | 14 R/Clayton.Markov.MLE.R | 564 ++++++++++++++++++++-------------------- R/Clayton.Markov.MLE.binom.R | 377 +++++++++++++------------- man/Clayton.Markov.GOF.Rd | 3 man/Clayton.Markov.GOF.binom.Rd | 3 man/Copula.Markov-package.Rd | 4 9 files changed, 500 insertions(+), 495 deletions(-)
Title: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski <jaroslaw.w.tuszynski@saic.com>
Maintainer: Michael Dietze <mdietze@gfz-potsdam.de>
Diff between caTools versions 1.17.1.4 dated 2020-01-13 and 1.18.0 dated 2020-01-17
DESCRIPTION | 17 - MD5 | 16 - NAMESPACE | 2 NEWS |only man/GIF.Rd | 492 +++++++++++++++++++++++++---------------------------- man/LogitBoost.Rd | 189 +++++++++----------- man/base64.Rd | 235 ++++++++++++------------- man/colAUC.Rd | 376 ++++++++++++++++++++-------------------- man/sumexact.Rd | 163 ++++++++--------- src/caTools_init.c |only 10 files changed, 728 insertions(+), 762 deletions(-)
Title: Time Series Regression Models with Distributed Lag Models
Description: Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Baltagi (2011) <doi:10.1007/978-3-642-20059-5> for more information.
Author: Haydar Demirhan [aut, cre, cph] (<https://orcid.org/0000-0002-8565-4710>)
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between dLagM versions 1.0.19 dated 2019-10-23 and 1.0.21 dated 2020-01-17
dLagM-1.0.19/dLagM/R/summary.ardlDlm.R |only dLagM-1.0.19/dLagM/R/summary.dlm.R |only dLagM-1.0.19/dLagM/R/summary.koyckDlm.R |only dLagM-1.0.19/dLagM/R/summary.polyDlm.R |only dLagM-1.0.19/dLagM/man/MASE.Rd |only dLagM-1.0.21/dLagM/DESCRIPTION | 8 - dLagM-1.0.21/dLagM/MD5 | 89 ++++++------ dLagM-1.0.21/dLagM/NAMESPACE | 20 ++ dLagM-1.0.21/dLagM/NEWS.md | 7 dLagM-1.0.21/dLagM/R/ardlBound.R | 21 +- dLagM-1.0.21/dLagM/R/ardlBoundOrders.R | 56 +++++-- dLagM-1.0.21/dLagM/R/ardlDlm.default.R | 74 ++++++++-- dLagM-1.0.21/dLagM/R/ardlDlm.main.R | 8 - dLagM-1.0.21/dLagM/R/dlm.default.R | 29 +++- dLagM-1.0.21/dLagM/R/dlm.main.R | 187 +++++++++++++------------- dLagM-1.0.21/dLagM/R/dlmForecast.main.R | 100 ++++++------- dLagM-1.0.21/dLagM/R/finiteDLMauto.default.R | 4 dLagM-1.0.21/dLagM/R/finiteDLMauto.main.R | 64 ++++---- dLagM-1.0.21/dLagM/R/forecast.ardlDlm.R | 34 ++-- dLagM-1.0.21/dLagM/R/forecast.dlm.R | 34 ++-- dLagM-1.0.21/dLagM/R/forecast.koyckDlm.R | 28 +-- dLagM-1.0.21/dLagM/R/forecast.polyDlm.R | 30 ++-- dLagM-1.0.21/dLagM/R/koyckDlm.default.R | 6 dLagM-1.0.21/dLagM/R/koyckDlm.main.R | 30 ++-- dLagM-1.0.21/dLagM/R/koyckDlmForecast.main.R | 14 - dLagM-1.0.21/dLagM/R/poly.dlm.tests.R | 38 ++--- dLagM-1.0.21/dLagM/R/polyDlm.R | 2 dLagM-1.0.21/dLagM/R/polyDlm.default.R | 8 - dLagM-1.0.21/dLagM/R/polyDlm.main.R | 36 ++--- dLagM-1.0.21/dLagM/R/polyDlmForecast.main.R | 34 ++-- dLagM-1.0.21/dLagM/R/rolCorplot.R | 24 ++- dLagM-1.0.21/dLagM/R/sortScore.R | 2 dLagM-1.0.21/dLagM/R/summaryFunctions.R |only dLagM-1.0.21/dLagM/README.md | 2 dLagM-1.0.21/dLagM/build/partial.rdb |binary dLagM-1.0.21/dLagM/data/seaLevelTempSOI.RData |only dLagM-1.0.21/dLagM/data/sunspotTemp.RData |only dLagM-1.0.21/dLagM/man/GoF.Rd |only dLagM-1.0.21/dLagM/man/ardlBound.Rd | 7 dLagM-1.0.21/dLagM/man/ardlDlm.Rd | 20 +- dLagM-1.0.21/dLagM/man/dLagM-package.Rd | 4 dLagM-1.0.21/dLagM/man/dlm.Rd | 47 +++--- dLagM-1.0.21/dLagM/man/finiteDLMauto.Rd | 20 -- dLagM-1.0.21/dLagM/man/forecast.Rd | 27 +-- dLagM-1.0.21/dLagM/man/koyckDlm.Rd | 17 +- dLagM-1.0.21/dLagM/man/polyDlm.Rd | 10 - dLagM-1.0.21/dLagM/man/rolCorPlot.Rd | 15 +- dLagM-1.0.21/dLagM/man/sdPercentiles.Rd | 4 dLagM-1.0.21/dLagM/man/seaLevelTempSOI.Rd |only dLagM-1.0.21/dLagM/man/sort.score.Rd | 11 - dLagM-1.0.21/dLagM/man/sunspotTemp.Rd |only 51 files changed, 655 insertions(+), 516 deletions(-)
Title: Spatial Implementation of Bayesian Networks and Mapping
Description: Allows spatial implementation of Bayesian networks and mapping in geographical space. It makes maps of expected value (or most likely state) given known and unknown conditions, maps of uncertainty measured as coefficient of variation or Shannon index (entropy), maps of probability associated to any states of any node of the network. Some additional features are provided as well: parallel processing options, data discretization routines and function wrappers designed for users with minimal knowledge of the R language. Outputs can be exported to any common GIS format.
Author: Dario Masante [aut, cre]
Maintainer: Dario Masante <dario.masante@gmail.com>
Diff between bnspatial versions 1.1 dated 2019-08-03 and 1.1.1 dated 2020-01-17
DESCRIPTION | 13 + MD5 | 61 ++++---- NAMESPACE | 2 NEWS.md | 11 + R/linkNode.R | 2 R/loadNetwork.R | 9 - R/mapTarget.R | 9 + R/queryNet.R | 21 ++- R/setClasses.R | 2 R/zzz.R | 4 build/vignette.rds |binary data/ConwyData.RData |binary inst/doc/bnspatial.R | 63 ++++----- inst/doc/bnspatial.Rmd | 46 +++--- inst/doc/bnspatial.html | 58 +++----- inst/extdata/Conwy.dbf |binary inst/extdata/Conwy.prj | 2 inst/extdata/Conwy.shp |binary inst/extdata/Conwy.shx |binary inst/extdata/ConwyLU.tif.aux.xml |only inst/extdata/ConwySlope.tif.aux.xml |only inst/extdata/ConwyStatus.tif.aux.xml |only man/ConwyData.Rd | 113 ++++++++-------- man/aoi.Rd | 140 ++++++++++---------- man/bnspatial.Rd | 244 ++++++++++++++++++----------------- man/dataDiscretize.Rd | 172 ++++++++++++------------ man/extractByMask.Rd | 84 ++++++------ man/linkNode.Rd | 165 ++++++++++++----------- man/loadNetwork.Rd | 76 +++++----- man/mapTarget.Rd | 239 +++++++++++++++++----------------- man/queryNet.Rd | 120 ++++++++--------- man/setClasses.Rd | 142 ++++++++++---------- vignettes/bnspatial.Rmd | 46 +++--- 33 files changed, 951 insertions(+), 893 deletions(-)
Title: Bayesian Logistic Regression with Heavy-Tailed Priors
Description: Efficient Bayesian multinomial logistic regression based on heavy-tailed
(hyper-LASSO, non-convex) priors. The posterior of coefficients and hyper-parameters
is sampled with restricted Gibbs sampling for leveraging the high-dimensionality and
Hamiltonian Monte Carlo for handling the high-correlation among coefficients. A detailed
description of the method: Li and Yao (2018),
Journal of Statistical Computation and Simulation, 88:14, 2827-2851, <arXiv:1405.3319>.
Author: Longhai Li [aut, cre] (<https://orcid.org/0000-0002-3074-8584>),
Steven Liu [aut]
Maintainer: Longhai Li <longhai@math.usask.ca>
Diff between HTLR versions 0.4-1 dated 2019-10-08 and 0.4-2 dated 2020-01-17
HTLR-0.4-1/HTLR/man/as.matrix.htlrfit.Rd |only HTLR-0.4-1/HTLR/man/predict.htlrfit.Rd |only HTLR-0.4-1/HTLR/man/summary.htlrfit.Rd |only HTLR-0.4-2/HTLR/DESCRIPTION | 19 ++--- HTLR-0.4-2/HTLR/MD5 | 78 +++++++++++--------- HTLR-0.4-2/HTLR/NAMESPACE | 11 +- HTLR-0.4-2/HTLR/NEWS.md | 34 ++++++++- HTLR-0.4-2/HTLR/R/RcppExports.R | 24 +++++- HTLR-0.4-2/HTLR/R/bplrhmc.r | 51 ++++++++----- HTLR-0.4-2/HTLR/R/data.R | 34 ++++++++- HTLR-0.4-2/HTLR/R/gendata.r | 37 ++------- HTLR-0.4-2/HTLR/R/htlr.R | 12 ++- HTLR-0.4-2/HTLR/R/mccoef.r | 12 +-- HTLR-0.4-2/HTLR/R/predict.R | 5 - HTLR-0.4-2/HTLR/R/std.R |only HTLR-0.4-2/HTLR/R/util.r | 98 +++++++++++--------------- HTLR-0.4-2/HTLR/README.md | 45 +++++++---- HTLR-0.4-2/HTLR/data/diabetes392.rda |only HTLR-0.4-2/HTLR/inst/doc/simu.Rmd | 2 HTLR-0.4-2/HTLR/inst/doc/simu.html | 94 ++++++++++++------------ HTLR-0.4-2/HTLR/man/as.matrix.htlr.fit.Rd |only HTLR-0.4-2/HTLR/man/colon.Rd | 2 HTLR-0.4-2/HTLR/man/diabetes392.Rd |only HTLR-0.4-2/HTLR/man/evaluate_pred.Rd | 3 HTLR-0.4-2/HTLR/man/figures |only HTLR-0.4-2/HTLR/man/gendata_FAM.Rd | 6 - HTLR-0.4-2/HTLR/man/gendata_MLR.Rd | 2 HTLR-0.4-2/HTLR/man/htlr.Rd | 34 +++++++-- HTLR-0.4-2/HTLR/man/htlr_fit.Rd | 35 +++++++-- HTLR-0.4-2/HTLR/man/htlr_predict.Rd | 10 ++ HTLR-0.4-2/HTLR/man/htlr_prior.Rd | 8 +- HTLR-0.4-2/HTLR/man/lasso_deltas.Rd | 11 ++ HTLR-0.4-2/HTLR/man/nzero_idx.Rd | 2 HTLR-0.4-2/HTLR/man/predict.htlr.fit.Rd |only HTLR-0.4-2/HTLR/man/split_data.Rd | 4 - HTLR-0.4-2/HTLR/man/std.Rd |only HTLR-0.4-2/HTLR/man/summary.htlr.fit.Rd |only HTLR-0.4-2/HTLR/src/RcppExports.cpp | 75 ++++++++++++++++++- HTLR-0.4-2/HTLR/src/gibbs.cpp | 48 ++++-------- HTLR-0.4-2/HTLR/src/gibbs.h | 26 +++--- HTLR-0.4-2/HTLR/src/main.cpp | 10 +- HTLR-0.4-2/HTLR/src/utils.cpp | 92 +++++++++++++++++++----- HTLR-0.4-2/HTLR/src/utils.h | 14 ++- HTLR-0.4-2/HTLR/tests/testthat/test-bplrhmc.r | 14 +++ HTLR-0.4-2/HTLR/tests/testthat/test-util.r |only HTLR-0.4-2/HTLR/vignettes/simu.Rmd | 2 46 files changed, 610 insertions(+), 344 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-18 0.2.0
2018-01-08 0.1.1
2017-11-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-19 1.2.0
2017-12-12 1.1.0