Title: Mosquito Gene Drive Explorer
Description: Provides a model designed to be a reliable testbed where various gene
drive interventions for mosquito-borne diseases control. It is being developed to
accommodate the use of various mosquito-specific gene drive systems within a
population dynamics framework that allows migration of individuals between patches
in landscape. Previous work developing the population dynamics can be found in Deredec et al.
(2001) <doi:10.1073/pnas.1110717108> and Hancock & Godfray (2007) <doi:10.1186/1475-2875-6-98>,
and extensions to accommodate basic CRISPR homing dynamics in Marshall et al. (2017)
<doi:10.1038/s41598-017-02744-7>.
Author: Héctor Manuel Sánchez Castellanos [aut, cre],
Jared Bennett [aut],
Sean Wu [aut],
John M. Marshall [aut]
Maintainer: Héctor Manuel Sánchez Castellanos <sanchez.hmsc@berkeley.edu>
Diff between MGDrivE versions 1.1.0 dated 2019-08-19 and 1.5.0 dated 2020-01-29
MGDrivE-1.1.0/MGDrivE/R/Network-Migration.R |only MGDrivE-1.1.0/MGDrivE/R/Patch-Releases.R |only MGDrivE-1.1.0/MGDrivE/man/accumulate_ADMnew_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/calcAquaticStagesSurvivalProbability.Rd |only MGDrivE-1.1.0/MGDrivE/man/calcMemoryWindow.Rd |only MGDrivE-1.1.0/MGDrivE/man/close_allConnections_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/createNamedPopMatrix.Rd |only MGDrivE-1.1.0/MGDrivE/man/createNamedPopVector.Rd |only MGDrivE-1.1.0/MGDrivE/man/getOmega.Rd |only MGDrivE-1.1.0/MGDrivE/man/getOmega_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_ADMdly_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_ADMnew_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_AF1dly_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_AF1new_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_AdPopEQ_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_EGG_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_EGGdly_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_F_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_LAR_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_LARdly_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_Leq_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_M_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_NetworkPointer_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_PUP_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_PUPdly_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_dayPopGrowth_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_directory_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_drivecubegenotype_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_g_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_genPopGrowth_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_migrationFemale_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_migrationMale_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_patchID_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_patch_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_patches_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_releaseType_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_simTime_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_thetaAq_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_wildType_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/get_windowSize_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/initPopMatrixArray.Rd |only MGDrivE-1.1.0/MGDrivE/man/initPopVectorArray.Rd |only MGDrivE-1.1.0/MGDrivE/man/initStagesDurations.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_admPupating_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_admPupating_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_admSurvival_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_admSurvival_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Mating_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Mating_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Pupation_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Pupation_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Survival_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_af1Survival_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_calcCumulativeLarvalDensityDependentFactor_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_calcCumulativePupaDensityDependentFactor_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_calcLarvalDensityDependentFactor_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_eggReleases2adults_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_eggReleases2eggs_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_eggsFract2_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_eggsFract2_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_femaleReleases_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_hatchingFract_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_hatchingFract_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larHatching_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larHatching_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larPupating_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larPupating_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larSurvival_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_larSurvival_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_maleReleases_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_numMaleFemale_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_numMaleFemale_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_ovipositG1_deterministic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_ovipositG1_stochastic_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/oneDay_updatePopulation_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/primePopMatrixArray.Rd |only MGDrivE-1.1.0/MGDrivE/man/primePopVectorArray.Rd |only MGDrivE-1.1.0/MGDrivE/man/set_ADMnew_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/set_AF1new_Patch.Rd |only MGDrivE-1.1.0/MGDrivE/man/set_migrationFemale_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/set_migrationMale_Network.Rd |only MGDrivE-1.1.0/MGDrivE/man/shiftAndUpdatePopVector.Rd |only MGDrivE-1.1.0/MGDrivE/man/turnStochasticityOnOrOff.Rd |only MGDrivE-1.5.0/MGDrivE/DESCRIPTION | 11 MGDrivE-1.5.0/MGDrivE/MD5 | 349 +-- MGDrivE-1.5.0/MGDrivE/NAMESPACE | 9 MGDrivE-1.5.0/MGDrivE/NEWS.md | 37 MGDrivE-1.5.0/MGDrivE/R/Cube-1LocusTA.R | 5 MGDrivE-1.5.0/MGDrivE/R/Cube-2LocusTA.R | 4 MGDrivE-1.5.0/MGDrivE/R/Cube-Auxiliary.R | 122 + MGDrivE-1.5.0/MGDrivE/R/Cube-CRISPR1RA.R | 9 MGDrivE-1.5.0/MGDrivE/R/Cube-CRISPR2MF.R | 8 MGDrivE-1.5.0/MGDrivE/R/Cube-KillerRescue.R | 2 MGDrivE-1.5.0/MGDrivE/R/Cube-MEDEA.R | 5 MGDrivE-1.5.0/MGDrivE/R/Cube-RIDL.R | 4 MGDrivE-1.5.0/MGDrivE/R/Cube-RecTrans.R | 2 MGDrivE-1.5.0/MGDrivE/R/Cube-SMendelian.R | 5 MGDrivE-1.5.0/MGDrivE/R/Cube-SplitDrive.R |only MGDrivE-1.5.0/MGDrivE/R/Cube-Wolbachia.R | 4 MGDrivE-1.5.0/MGDrivE/R/Cube-tGD.R |only MGDrivE-1.5.0/MGDrivE/R/Cube-tGDX.R |only MGDrivE-1.5.0/MGDrivE/R/MGDrivE-Auxiliary.R | 557 ++--- MGDrivE-1.5.0/MGDrivE/R/MGDrivE-Graphics.R | 149 - MGDrivE-1.5.0/MGDrivE/R/MGDrivE-Releases.R | 241 +- MGDrivE-1.5.0/MGDrivE/R/MGDrivE-Setup.R | 256 -- MGDrivE-1.5.0/MGDrivE/R/MGDrivE.R | 235 +- MGDrivE-1.5.0/MGDrivE/R/Network-Class.R | 417 +--- MGDrivE-1.5.0/MGDrivE/R/Network-Parameters.R | 417 ++-- MGDrivE-1.5.0/MGDrivE/R/Network-Simulation.R | 199 -- MGDrivE-1.5.0/MGDrivE/R/Patch-Class.R | 488 +---- MGDrivE-1.5.0/MGDrivE/R/Patch-Methods.R | 297 ++- MGDrivE-1.5.0/MGDrivE/R/Patch-Migration.R | 168 - MGDrivE-1.5.0/MGDrivE/R/Patch-Simulation.R | 939 ++++------ MGDrivE-1.5.0/MGDrivE/R/RcppExports.R | 61 MGDrivE-1.5.0/MGDrivE/R/data.R | 10 MGDrivE-1.5.0/MGDrivE/R/zzz.R | 4 MGDrivE-1.5.0/MGDrivE/build/partial.rdb |binary MGDrivE-1.5.0/MGDrivE/build/vignette.rds |binary MGDrivE-1.5.0/MGDrivE/inst/CITATION | 18 MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_examples.R | 578 ++---- MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_examples.Rmd | 663 +++---- MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_examples.html | 684 +++---- MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_math.R | 2 MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_math.Rmd | 32 MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_math.html | 34 MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_run.R | 126 - MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_run.Rmd | 77 MGDrivE-1.5.0/MGDrivE/inst/doc/mgdrive_run.html | 194 +- MGDrivE-1.5.0/MGDrivE/man/MGDrivE-Cube.Rd | 35 MGDrivE-1.5.0/MGDrivE/man/MGDrivE-Model.Rd | 162 + MGDrivE-1.5.0/MGDrivE/man/MGDrivE.Rd | 70 MGDrivE-1.5.0/MGDrivE/man/Network.Rd | 45 MGDrivE-1.5.0/MGDrivE/man/Patch.Rd | 122 - MGDrivE-1.5.0/MGDrivE/man/aggregateFemales.Rd | 16 MGDrivE-1.5.0/MGDrivE/man/aggregateOutput.Rd | 5 MGDrivE-1.5.0/MGDrivE/man/basicBatchMigration.Rd | 20 MGDrivE-1.5.0/MGDrivE/man/basicRepeatedReleases.Rd | 51 MGDrivE-1.5.0/MGDrivE/man/calcAquaticStageSurvivalProbability.Rd | 7 MGDrivE-1.5.0/MGDrivE/man/calcAverageGenerationTime.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/calcDensityDependentDeathRate.Rd | 22 MGDrivE-1.5.0/MGDrivE/man/calcExpKernel.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/calcGammaKernel.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/calcHurdleExpKernel.Rd | 25 MGDrivE-1.5.0/MGDrivE/man/calcLarvalDist.Rd |only MGDrivE-1.5.0/MGDrivE/man/calcLarvalPopEquilibrium.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/calcLarvalStageMortalityRate.Rd | 19 MGDrivE-1.5.0/MGDrivE/man/calcLognormalKernel.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/calcOmega.Rd |only MGDrivE-1.5.0/MGDrivE/man/calcPopulationGrowthRate.Rd | 7 MGDrivE-1.5.0/MGDrivE/man/calcQuantiles.Rd | 9 MGDrivE-1.5.0/MGDrivE/man/calcVinEll.Rd | 10 MGDrivE-1.5.0/MGDrivE/man/calcZeroInflation.Rd | 8 MGDrivE-1.5.0/MGDrivE/man/cube2csv.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/cubeHoming1RA.Rd | 17 MGDrivE-1.5.0/MGDrivE/man/cubeHomingDrive.Rd | 24 MGDrivE-1.5.0/MGDrivE/man/cubeKillerRescue.Rd | 13 MGDrivE-1.5.0/MGDrivE/man/cubeMEDEA.Rd | 13 MGDrivE-1.5.0/MGDrivE/man/cubeMendelian.Rd | 13 MGDrivE-1.5.0/MGDrivE/man/cubeModifiers.Rd | 13 MGDrivE-1.5.0/MGDrivE/man/cubeOneLocusTA.Rd | 12 MGDrivE-1.5.0/MGDrivE/man/cubeRIDL.Rd | 12 MGDrivE-1.5.0/MGDrivE/man/cubeReciprocalTranslocations.Rd | 10 MGDrivE-1.5.0/MGDrivE/man/cubeSplitDrive.Rd |only MGDrivE-1.5.0/MGDrivE/man/cubeTGD.Rd |only MGDrivE-1.5.0/MGDrivE/man/cubeTGDX.Rd |only MGDrivE-1.5.0/MGDrivE/man/cubeTwoLocusTA.Rd | 12 MGDrivE-1.5.0/MGDrivE/man/cubeWolbachia.Rd | 10 MGDrivE-1.5.0/MGDrivE/man/eraseDirectory.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/generateReleaseVector.Rd | 20 MGDrivE-1.5.0/MGDrivE/man/get_alpha_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_batchLocRow_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_batchProbs_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_batchSex_Network.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/get_conF_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_drivecubeindex_Network.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/get_eta_Network.Rd | 9 MGDrivE-1.5.0/MGDrivE/man/get_femaleMigration_Patch.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/get_migrationFemaleRow_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_migrationMaleRow_Network.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/get_omega_Network.Rd |only MGDrivE-1.5.0/MGDrivE/man/get_patchReleases_Network.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/get_timeAq_Network.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/ggColUtility.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/moveMatAll2.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/moveMatTriDiagonal.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/multRun_Network.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/normalise.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/oneDay_Migration_Network.Rd | 5 MGDrivE-1.5.0/MGDrivE/man/oneDay_Network.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/oneDay_PopDynamics_Patch.Rd | 13 MGDrivE-1.5.0/MGDrivE/man/oneDay_adultDeath_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_adultDeath_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_eggDM_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_eggDM_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_eggReleases_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_initOutput_Patch.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/oneDay_larvaDM_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_larvaDM_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_mating_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_mating_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_migrationIn_Patch.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/oneDay_migrationOut_deterministic_Patch.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/oneDay_migrationOut_stochastic_Patch.Rd | 17 MGDrivE-1.5.0/MGDrivE/man/oneDay_oviposit_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_oviposit_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_pupaDM_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_pupaDM_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_pupation_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_pupation_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_releases_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/oneDay_writeOutput_Patch.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/oneRun_Network.Rd | 6 MGDrivE-1.5.0/MGDrivE/man/parameterizeMGDrivE.Rd | 72 MGDrivE-1.5.0/MGDrivE/man/plotMGDrivEMult.Rd | 8 MGDrivE-1.5.0/MGDrivE/man/plotMGDrivESingle.Rd | 9 MGDrivE-1.5.0/MGDrivE/man/rDirichlet.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/reset_Network.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/retrieveOutput.Rd | 3 MGDrivE-1.5.0/MGDrivE/man/set_NetworkPointer_Patch.Rd | 2 MGDrivE-1.5.0/MGDrivE/man/set_initialPopulation_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/set_population_deterministic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/set_population_stochastic_Patch.Rd |only MGDrivE-1.5.0/MGDrivE/man/setupMGDrivE.Rd | 4 MGDrivE-1.5.0/MGDrivE/man/splitOutput.Rd | 12 MGDrivE-1.5.0/MGDrivE/src/MGDrivE-Auxilary.cpp | 80 MGDrivE-1.5.0/MGDrivE/src/MGDrivE-DistanceFunctions.cpp | 19 MGDrivE-1.5.0/MGDrivE/src/MGDrivE-Kernels.cpp | 65 MGDrivE-1.5.0/MGDrivE/src/RcppExports.cpp | 22 MGDrivE-1.5.0/MGDrivE/vignettes/mgdrive_examples.Rmd | 663 +++---- MGDrivE-1.5.0/MGDrivE/vignettes/mgdrive_math.Rmd | 32 MGDrivE-1.5.0/MGDrivE/vignettes/mgdrive_run.Rmd | 77 231 files changed, 4499 insertions(+), 4952 deletions(-)
Title: Interface to 'Interpretable AI' Modules
Description: An interface to the algorithms of 'Interpretable AI'
<https://www.interpretable.ai> from the R programming language.
'Interpretable AI' provides various modules, including 'Optimal Trees' for
classification, regression, prescription and survival analysis, 'Optimal
Imputation' for missing data imputation and outlier detection, and 'Optimal
Feature Selection' for exact sparse regression. The 'iai' package is an
open-source project. The 'Interpretable AI' software modules are proprietary
products, but free academic and evaluation licenses are available.
Author: Jack Dunn [aut, cre],
Ying Zhuo [aut],
Interpretable AI LLC [cph]
Maintainer: Jack Dunn <jack@interpretable.ai>
Diff between iai versions 1.1.0 dated 2019-09-13 and 1.2.0 dated 2020-01-29
DESCRIPTION | 10 - MD5 | 200 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 7 R/iaibase.R | 85 ++++++++--- R/iaitrees.R | 150 ++++++++++----------- R/interface.R | 52 +++++-- R/optimalfeatureselection.R | 12 - R/optimaltrees.R | 10 - R/optimpute.R | 18 +- R/utils.R | 6 README.md | 2 inst/julia/convert.jl | 7 man/apply.Rd | 2 man/apply_nodes.Rd | 2 man/as.mixeddata.Rd | 2 man/clone.Rd | 2 man/decision_path.Rd | 2 man/delete_rich_output_param.Rd | 2 man/fit.Rd | 2 man/fit_cv.Rd | 2 man/fit_transform.Rd | 7 man/fit_transform_cv.Rd | 2 man/get_best_params.Rd | 2 man/get_classification_label.Rd | 4 man/get_classification_proba.Rd | 4 man/get_depth.Rd | 4 man/get_grid_results.Rd | 2 man/get_learner.Rd | 2 man/get_lower_child.Rd | 4 man/get_num_nodes.Rd | 4 man/get_num_samples.Rd | 4 man/get_params.Rd | 2 man/get_parent.Rd | 4 man/get_prediction_constant.Rd | 4 man/get_prediction_weights.Rd | 4 man/get_prescription_treatment_rank.Rd | 4 man/get_regression_constant.Rd | 4 man/get_regression_weights.Rd | 4 man/get_rich_output_params.Rd | 2 man/get_split_categories.Rd | 4 man/get_split_feature.Rd | 4 man/get_split_threshold.Rd | 4 man/get_split_weights.Rd | 4 man/get_survival_curve.Rd | 4 man/get_survival_curve_data.Rd | 6 man/get_upper_child.Rd | 4 man/grid_search.Rd | 2 man/imputation_learner.Rd | 2 man/impute.Rd | 2 man/impute_cv.Rd | 2 man/is_categoric_split.Rd | 4 man/is_hyperplane_split.Rd | 4 man/is_leaf.Rd | 4 man/is_mixed_ordinal_split.Rd | 4 man/is_mixed_parallel_split.Rd | 4 man/is_ordinal_split.Rd | 4 man/is_parallel_split.Rd | 4 man/mean_imputation_learner.Rd | 2 man/missing_goes_lower.Rd | 4 man/multi_questionnaire.Rd | 4 man/multi_tree_plot.Rd | 4 man/opt_knn_imputation_learner.Rd | 2 man/opt_svm_imputation_learner.Rd | 2 man/opt_tree_imputation_learner.Rd | 2 man/optimal_feature_selection_classifier.Rd | 2 man/optimal_feature_selection_regressor.Rd | 2 man/optimal_tree_classifier.Rd | 2 man/optimal_tree_prescription_maximizer.Rd | 2 man/optimal_tree_prescription_minimizer.Rd | 2 man/optimal_tree_regressor.Rd | 2 man/optimal_tree_survivor.Rd | 2 man/predict.Rd | 2 man/predict_hazard.Rd |only man/predict_outcomes.Rd | 2 man/predict_proba.Rd | 2 man/print_path.Rd | 2 man/questionnaire.Rd | 4 man/rand_imputation_learner.Rd | 2 man/read_json.Rd | 2 man/reset_display_label.Rd | 2 man/roc_curve.Rd | 2 man/score.Rd | 2 man/set_display_label.Rd | 2 man/set_params.Rd | 2 man/set_rich_output_param.Rd | 2 man/set_threshold.Rd | 4 man/show_in_browser.Rd | 2 man/show_questionnaire.Rd | 2 man/single_knn_imputation_learner.Rd | 2 man/split_data.Rd | 2 man/transform.Rd | 2 man/tree_plot.Rd | 4 man/variable_importance.Rd | 4 man/write_dot.Rd | 4 man/write_html.Rd | 4 man/write_json.Rd | 2 man/write_png.Rd | 4 man/write_questionnaire.Rd | 4 tests/testthat/helper.R |only tests/testthat/test_iaitrees.R | 30 +++- tests/testthat/test_optimpute.R | 35 ++-- 102 files changed, 485 insertions(+), 391 deletions(-)
Title: Access EPA 'ECHO' Data
Description: An R interface to United States Environmental
Protection Agency (EPA) Environmental Compliance
History Online ('ECHO') Application Program Interface
(API). 'ECHO' provides information about EPA permitted
facilities, discharges, and other reporting info
associated with permitted entities. Data are obtained
from <https://echo.epa.gov/>.
Author: Michael Schramm [aut, cre]
Maintainer: Michael Schramm <michael.schramm@ag.tamu.edu>
Diff between echor versions 0.1.3 dated 2019-09-18 and 0.1.4 dated 2020-01-29
echor-0.1.3/echor/tests/testthat/api/air_rest_services.get_download-f52100.csv |only echor-0.1.3/echor/tests/testthat/api/air_rest_services.get_geojson-e6d42a.json |only echor-0.1.3/echor/tests/testthat/api/caa_poll_rpt_rest_services.get_caapr-280d2c.json |only echor-0.1.3/echor/tests/testthat/api/cwa_rest_services.get_download-07b0ad.csv |only echor-0.1.3/echor/tests/testthat/api/cwa_rest_services.get_download-61e6f7.csv |only echor-0.1.3/echor/tests/testthat/api/cwa_rest_services.get_geojson-4597be.json |only echor-0.1.3/echor/tests/testthat/api/eff_rest_services.download_effluent_chart-ed441f.csv |only echor-0.1.3/echor/tests/testthat/api/mocks.R |only echor-0.1.3/echor/tests/testthat/api/sdw_rest_services.get_download-cd324d.csv |only echor-0.1.3/echor/vignettes/int/0/air_rest_services.get_download-7b219f.csv |only echor-0.1.3/echor/vignettes/int/0/caa_poll_rpt_rest_services.get_caapr-280d2c.json |only echor-0.1.3/echor/vignettes/int/0/cwa_rest_services.get_download-f318cb.csv |only echor-0.1.3/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-3e061a.csv |only echor-0.1.3/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-b968e1.csv |only echor-0.1.3/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-ed441f.csv |only echor-0.1.4/echor/DESCRIPTION | 17 echor-0.1.4/echor/MD5 | 109 echor-0.1.4/echor/NAMESPACE | 2 echor-0.1.4/echor/NEWS.md | 9 echor-0.1.4/echor/R/air.R | 2 echor-0.1.4/echor/R/echoGetFacilities.R | 2 echor-0.1.4/echor/R/echoGetReports.R | 2 echor-0.1.4/echor/R/helpers.R | 28 echor-0.1.4/echor/R/water.R | 2 echor-0.1.4/echor/README.md | 264 echor-0.1.4/echor/build/vignette.rds |binary echor-0.1.4/echor/inst/WORDLIST |only echor-0.1.4/echor/inst/doc/introduction.R | 28 echor-0.1.4/echor/inst/doc/introduction.Rmd | 14 echor-0.1.4/echor/inst/doc/introduction.html | 1467 +- echor-0.1.4/echor/man/downloadDMRs.Rd | 66 echor-0.1.4/echor/man/echoAirGetFacilityInfo.Rd | 82 echor-0.1.4/echor/man/echoAirGetMeta.Rd | 48 echor-0.1.4/echor/man/echoGetCAAPR.Rd | 56 echor-0.1.4/echor/man/echoGetEffluent.Rd | 58 echor-0.1.4/echor/man/echoGetFacilities.Rd | 44 echor-0.1.4/echor/man/echoGetReports.Rd | 44 echor-0.1.4/echor/man/echoSDWGetMeta.Rd | 48 echor-0.1.4/echor/man/echoSDWGetSystems.Rd | 50 echor-0.1.4/echor/man/echoWaterGetFacilityInfo.Rd | 84 echor-0.1.4/echor/man/echoWaterGetMeta.Rd | 48 echor-0.1.4/echor/man/echoWaterGetParams.Rd | 60 echor-0.1.4/echor/man/figures/README-example3-1.png |binary echor-0.1.4/echor/man/figures/README-unnamed-chunk-2-1.png |binary echor-0.1.4/echor/tests/spelling.R |only echor-0.1.4/echor/tests/testthat/api/air_rest_services.get_download-f98011.csv |only echor-0.1.4/echor/tests/testthat/api/air_rest_services.get_facility_info-96582d.json | 6 echor-0.1.4/echor/tests/testthat/api/air_rest_services.get_facility_info-fdcbbc.json | 6 echor-0.1.4/echor/tests/testthat/api/air_rest_services.get_geojson-4d487a.json |only echor-0.1.4/echor/tests/testthat/api/caa_poll_rpt_rest_services.get_caapr-75a2fe.json |only echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_download-279954.csv |only echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_download-371b75.csv |only echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_facility_info-3c5df1.json | 6 echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_facility_info-3ebb0f.json | 6 echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_facility_info-5daf35.json | 6 echor-0.1.4/echor/tests/testthat/api/cwa_rest_services.get_geojson-1b9acd.json |only echor-0.1.4/echor/tests/testthat/api/eff_rest_services.download_effluent_chart-81e3b7.csv |only echor-0.1.4/echor/tests/testthat/api/sdw_rest_services.get_download-cd93dc.csv |only echor-0.1.4/echor/tests/testthat/api/sdw_rest_services.get_systems-c651ad.json | 6 echor-0.1.4/echor/tests/testthat/test-expected_objects.R | 13 echor-0.1.4/echor/vignettes/int/0/air_rest_services.get_download-73d811.csv |only echor-0.1.4/echor/vignettes/int/0/air_rest_services.get_facility_info-dd2056.json | 164 echor-0.1.4/echor/vignettes/int/0/air_rest_services.metadata-a4f118.json | 312 echor-0.1.4/echor/vignettes/int/0/caa_poll_rpt_rest_services.get_caapr-75a2fe.json |only echor-0.1.4/echor/vignettes/int/0/cwa_rest_services.get_download-fbdc39.csv |only echor-0.1.4/echor/vignettes/int/0/cwa_rest_services.get_facility_info-29a83a.json | 6244 ++++++---- echor-0.1.4/echor/vignettes/int/0/cwa_rest_services.metadata-a4f118.json | 872 - echor-0.1.4/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-1ca27d.csv |only echor-0.1.4/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-79e012.csv |only echor-0.1.4/echor/vignettes/int/0/eff_rest_services.download_effluent_chart-a94450.json |only echor-0.1.4/echor/vignettes/introduction.Rmd | 14 71 files changed, 6783 insertions(+), 3506 deletions(-)
Title: An Individual-Based Population Genetic Simulation Environment
Description: An interface between R and the metasim simulation engine.
The simulation environment is documented in: "Strand, A.(2002) <DOI:10.1046/j.1471-8286.2002.00208.x> Metasim 1.0: an individual-based environment for simulating population genetics of
complex population dynamics. Mol. Ecol. Notes.
Please see the vignettes CreatingLandscapes and Simulating to get some ideas on how to use the packages.
See the rmetasim vignette to get an overview and to see important changes to the
code in the most recent version.
Author: Allan Strand <stranda@cofc.edu>,
James Niehaus
Maintainer: Allan Strand <stranda@cofc.edu>
Diff between rmetasim versions 3.1.7 dated 2018-02-15 and 3.1.13 dated 2020-01-29
CHANGELOG | 8 DESCRIPTION | 8 MD5 | 45 +- NAMESPACE | 2 R/graphics.R | 4 R/is_landscape.R | 357 +++++++++--------- R/landscape.mig.matrix.R | 2 R/landscape.setallelefreq.R |only R/loci.R | 10 build/vignette.rds |binary inst/doc/ApplyCarryToStage.html | 417 +++++++++++++++------- inst/doc/CreatingLandscapes.html | 699 ++++++++++++++++++++++++------------- inst/doc/Sexuality-and-mating.R | 6 inst/doc/Sexuality-and-mating.Rmd | 6 inst/doc/Sexuality-and-mating.html | 260 ++++++++++--- inst/doc/Simulating.html | 514 ++++++++++++++++++--------- inst/doc/rmetasim.html | 241 ++++++++++-- man/is.landscape.Rd | 3 man/landscape.locus.Rd | 3 man/landscape.locus.states.Rd | 3 man/landscape.setallelefreq.Rd |only man/landscape.setpopfreq.Rd |only man/landscape.write.foreign.Rd | 2 src/Makevars | 2 vignettes/Sexuality-and-mating.Rmd | 6 25 files changed, 1739 insertions(+), 859 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.9-9 dated 2019-12-19 and 4.10-0 dated 2020-01-29
DESCRIPTION | 8 - MD5 | 82 ++++++++------- NAMESPACE | 6 + NEWS | 27 +++++ R/asin2ir.R | 18 ++- R/asin2p.R | 71 +++++++++---- R/backtransf.R | 32 ++++-- R/bubble.R | 9 - R/bylabel.R | 5 R/catmeth.R | 210 ++++++++++++++++++++++------------------ R/chkchar.R | 22 +--- R/chkcolor.R | 6 - R/crtitle.R | 15 +- R/drapery.R |only R/forest.R | 242 +++++++++++++++++++++++------------------------ R/format.p.R | 23 ++-- R/formatCI.R | 10 - R/formatPT.R | 12 +- R/funnel.R | 22 ++-- R/is.installed.package.R | 53 ++++------ R/kentau.R | 5 R/labbe.R | 6 - R/meta-internal.R | 9 - R/meta-package.R | 10 + R/metabias.R | 5 R/metabin.R | 43 +++++++- R/metabind.R | 45 ++++---- R/metacum.R | 3 R/p.ci.R | 16 +-- R/print.meta.R | 14 +- R/read.rm5.R | 56 ++++++---- R/setchar.R | 9 - R/settings.meta.R | 21 ++-- R/setunit.R | 20 --- R/summary.meta.R | 161 ++++++++++++++++--------------- R/trimfill.R | 6 - R/update.meta.R | 2 R/warnarg.R | 21 +--- R/xlab.R | 80 ++++++--------- man/drapery.Rd |only man/forest.Rd | 2 man/funnel.Rd | 10 - man/labbe.Rd | 6 - 43 files changed, 769 insertions(+), 654 deletions(-)
Title: Inference Tool for Antibody Haplotype
Description: Infers V-D-J haplotypes and gene deletions from AIRR-seq data,
based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
Author: Ayelet Peres [aut, cre],
Moriah Gidoni [aut],
Gur Yaari [aut, cph]
Maintainer: Ayelet Peres <peresay@biu.ac.il>
Diff between rabhit versions 0.1.1 dated 2019-05-08 and 0.1.4 dated 2020-01-29
rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_7feefaacda100e5bc8c0d5ab0e2e197a.RData |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_7feefaacda100e5bc8c0d5ab0e2e197a.rdb |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_7feefaacda100e5bc8c0d5ab0e2e197a.rdx |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_4a12901b7eaa05ed13d88577ae6dbb6c.RData |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_4a12901b7eaa05ed13d88577ae6dbb6c.rdb |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_4a12901b7eaa05ed13d88577ae6dbb6c.rdx |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_4357c1c46762e1ab592877e098eee4ff.RData |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_4357c1c46762e1ab592877e098eee4ff.rdb |only rabhit-0.1.1/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_4357c1c46762e1ab592877e098eee4ff.rdx |only rabhit-0.1.4/rabhit/DESCRIPTION | 27 rabhit-0.1.4/rabhit/MD5 | 127 - rabhit-0.1.4/rabhit/NAMESPACE | 20 rabhit-0.1.4/rabhit/NEWS.md | 20 rabhit-0.1.4/rabhit/R/Data.R | 59 rabhit-0.1.4/rabhit/R/functions.R | 28 rabhit-0.1.4/rabhit/R/graphic_functions.R | 835 +++++++--- rabhit-0.1.4/rabhit/R/internal_functions.R | 425 ++++- rabhit-0.1.4/rabhit/R/rabhit.R | 55 rabhit-0.1.4/rabhit/R/sysdata.rda |binary rabhit-0.1.4/rabhit/R/zzz.R |only rabhit-0.1.4/rabhit/build/vignette.rds |binary rabhit-0.1.4/rabhit/data/GERM.rda |only rabhit-0.1.4/rabhit/data/HDGERM.rda |binary rabhit-0.1.4/rabhit/data/HJGERM.rda |binary rabhit-0.1.4/rabhit/data/HVGERM.rda |binary rabhit-0.1.4/rabhit/data/KJGERM.rda |only rabhit-0.1.4/rabhit/data/KVGERM.rda |only rabhit-0.1.4/rabhit/data/LJGERM.rda |only rabhit-0.1.4/rabhit/data/LVGERM.rda |only rabhit-0.1.4/rabhit/inst/doc/RAbHIT-vignette.R | 52 rabhit-0.1.4/rabhit/inst/doc/RAbHIT-vignette.Rmd | 26 rabhit-0.1.4/rabhit/inst/doc/RAbHIT-vignette.pdf |binary rabhit-0.1.4/rabhit/man/GERM.Rd |only rabhit-0.1.4/rabhit/man/KJGERM.Rd |only rabhit-0.1.4/rabhit/man/KVGERM.Rd |only rabhit-0.1.4/rabhit/man/LJGERM.Rd |only rabhit-0.1.4/rabhit/man/createFullHaplotype.Rd | 19 rabhit-0.1.4/rabhit/man/deletionHeatmap.Rd | 12 rabhit-0.1.4/rabhit/man/deletionsByBinom.Rd | 7 rabhit-0.1.4/rabhit/man/deletionsByVpooled.Rd | 15 rabhit-0.1.4/rabhit/man/dot-onAttach.Rd |only rabhit-0.1.4/rabhit/man/hapDendo.Rd | 11 rabhit-0.1.4/rabhit/man/hapHeatmap.Rd | 43 rabhit-0.1.4/rabhit/man/plotDeletionsByBinom.Rd | 10 rabhit-0.1.4/rabhit/man/plotDeletionsByVpooled.Rd | 10 rabhit-0.1.4/rabhit/man/plotHaplotype.Rd | 13 rabhit-0.1.4/rabhit/man/rabhit.Rd | 1 rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette.Rmd | 26 rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-10_d579511fdbcb1285e73198003ec33b32.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-10_d579511fdbcb1285e73198003ec33b32.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-10_d579511fdbcb1285e73198003ec33b32.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-11_106fec055fee0a67f7bec70bad4e4b25.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-11_106fec055fee0a67f7bec70bad4e4b25.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-11_106fec055fee0a67f7bec70bad4e4b25.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-12_ded83787596a509ff5e9d39c3b7b4fe9.RData |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_8ad96d7f70992f7dbb2d690525106c0d.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_8ad96d7f70992f7dbb2d690525106c0d.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-13_8ad96d7f70992f7dbb2d690525106c0d.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-14_c3ba92c9c2b4025023b598256ef2b363.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-14_c3ba92c9c2b4025023b598256ef2b363.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-14_c3ba92c9c2b4025023b598256ef2b363.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-15_8675d15094393d08136075d459480092.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-15_8675d15094393d08136075d459480092.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-15_8675d15094393d08136075d459480092.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-16_7985331a070cc9e8be2972e2f3db0191.RData |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_f628aec5e7ff84e1ecb8b9876b33fb4d.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_f628aec5e7ff84e1ecb8b9876b33fb4d.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-17_f628aec5e7ff84e1ecb8b9876b33fb4d.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-18_7344768fc51efc58ec2f30a474049a8e.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-18_7344768fc51efc58ec2f30a474049a8e.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-18_7344768fc51efc58ec2f30a474049a8e.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_bbb06ada84478addf695d6d3d4e5df0b.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_bbb06ada84478addf695d6d3d4e5df0b.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-19_bbb06ada84478addf695d6d3d4e5df0b.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-20_45245e273080562cb4ae0c33570a9737.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-20_45245e273080562cb4ae0c33570a9737.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-20_45245e273080562cb4ae0c33570a9737.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-21_e28abdc2df4ddbb98bf5db209cf5effb.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-21_e28abdc2df4ddbb98bf5db209cf5effb.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-21_e28abdc2df4ddbb98bf5db209cf5effb.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-9_5959d33c84e8b18a44dfb73f97315bf1.RData |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-9_5959d33c84e8b18a44dfb73f97315bf1.rdb |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_cache/latex/unnamed-chunk-9_5959d33c84e8b18a44dfb73f97315bf1.rdx |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-10-1.pdf |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-11-1.pdf |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-12-1.pdf |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-18-1.pdf |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-19-1.pdf |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-20-1.pdf |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-21-1.pdf |only rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-4-1.pdf |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-8-1.pdf |binary rabhit-0.1.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-9-1.pdf |binary 93 files changed, 1371 insertions(+), 470 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints
objects are provided. Non-Gaussian models are fit using INLA, and Gaussian
geostatistical models use Maximum Likelihood Estimation. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.7.8 dated 2019-04-16 and 1.8.0 dated 2020-01-29
geostatsp-1.7.8/geostatsp/vignettes/Makefile |only geostatsp-1.8.0/geostatsp/DESCRIPTION | 11 +-- geostatsp-1.8.0/geostatsp/MD5 | 78 +++++++++++----------- geostatsp-1.8.0/geostatsp/R/0gm.R | 79 +++++++++++++++++------ geostatsp-1.8.0/geostatsp/R/RFsimulate.R | 12 +-- geostatsp-1.8.0/geostatsp/R/glgm.R | 50 ++++++++++---- geostatsp-1.8.0/geostatsp/R/grfConditional.R | 6 - geostatsp-1.8.0/geostatsp/R/informationLgm.R | 3 geostatsp-1.8.0/geostatsp/R/krige.R | 9 +- geostatsp-1.8.0/geostatsp/R/lgm.Raster.R | 6 - geostatsp-1.8.0/geostatsp/R/loglikGmrf.R | 50 ++++++++------ geostatsp-1.8.0/geostatsp/R/loglikLgm.R | 18 ++--- geostatsp-1.8.0/geostatsp/R/param.R | 2 geostatsp-1.8.0/geostatsp/R/priorInla.R | 19 ++++- geostatsp-1.8.0/geostatsp/R/profLlgm.R | 4 - geostatsp-1.8.0/geostatsp/R/spdfToBrick.R | 2 geostatsp-1.8.0/geostatsp/R/stackRasterList.R | 16 ++-- geostatsp-1.8.0/geostatsp/build/geostatsp.pdf |binary geostatsp-1.8.0/geostatsp/build/vignette.rds |binary geostatsp-1.8.0/geostatsp/data/gambiaUTM.RData |binary geostatsp-1.8.0/geostatsp/data/loaloa.RData |binary geostatsp-1.8.0/geostatsp/data/murder.RData |binary geostatsp-1.8.0/geostatsp/data/rongelapUTM.RData |binary geostatsp-1.8.0/geostatsp/data/swissRain.RData |binary geostatsp-1.8.0/geostatsp/data/swissRainR.RData |binary geostatsp-1.8.0/geostatsp/data/torontoPop.RData |binary geostatsp-1.8.0/geostatsp/data/wheat.RData |binary geostatsp-1.8.0/geostatsp/inst/doc/glgm.R |only geostatsp-1.8.0/geostatsp/inst/doc/glgm.pdf |binary geostatsp-1.8.0/geostatsp/inst/doc/lgcp.R |only geostatsp-1.8.0/geostatsp/inst/doc/lgcp.pdf |binary geostatsp-1.8.0/geostatsp/man/RFsimulate.Rd | 5 - geostatsp-1.8.0/geostatsp/man/conditionalGmrf.Rd | 2 geostatsp-1.8.0/geostatsp/man/krige.Rd | 2 geostatsp-1.8.0/geostatsp/man/lgm.Rd | 2 geostatsp-1.8.0/geostatsp/man/profLlgm.Rd | 4 - geostatsp-1.8.0/geostatsp/man/simLgcp.Rd | 3 geostatsp-1.8.0/geostatsp/man/stackRasterList.Rd | 2 geostatsp-1.8.0/geostatsp/tests/lgmRaster.R | 11 +-- geostatsp-1.8.0/geostatsp/tests/likfitLgm.R | 4 - geostatsp-1.8.0/geostatsp/tests/profLlgm.R | 2 geostatsp-1.8.0/geostatsp/vignettes/xxMakefilexx |only 42 files changed, 244 insertions(+), 158 deletions(-)
Title: Heuristics Tools Based on Mutual Information for Variable
Ranking
Description: A computational toolbox of heuristics approaches for performing variable ranking and feature selection based on mutual information well adapted for multivariate system epidemiology datasets. The core function is a general implementation of the minimum redundancy maximum relevance model. R. Battiti (1994) <doi:10.1109/72.298224>. Continuous variables are discretized using a large choice of rule. Variables ranking can be learned with a sequential forward/backward search algorithm. The two main problems that can be addressed by this package is the selection of the most representative variable within a group of variables of interest (i.e. dimension reduction) and variable ranking with respect to a set of features of interest.
Author: Gilles Kratzer [aut, cre] (<https://orcid.org/0000-0002-5929-8935>),
Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Gilles Kratzer <gilles.kratzer@math.uzh.ch>
Diff between varrank versions 0.2 dated 2018-12-20 and 0.3 dated 2020-01-29
DESCRIPTION | 11 - MD5 | 32 ++-- NEWS.md | 7 - R/infotheo-toolbox.R | 14 +- R/plot-varrank.R | 318 +++++++++++++++++++++++++++---------------------- R/varrank.R | 29 +++- build/vignette.rds |binary data |only inst/CITATION | 4 inst/doc/varrank.R | 37 ----- inst/doc/varrank.Rmd | 45 ------ inst/doc/varrank.html | 96 +++----------- man/nassCDS.Rd |only man/plot-varrank.Rd | 3 man/print-varrank.Rd | 2 man/summary-varrank.Rd | 4 man/varrank.Rd | 13 +- vignettes/varrank.Rmd | 45 ------ 18 files changed, 287 insertions(+), 373 deletions(-)
Title: The Ranking Project: Visualizations for Comparing Populations
Description: Functions to generate plots and tables for comparing independently-
sampled populations. Companion package to "A Primer on Visualizations
for Comparing Populations, Including the Issue of Overlapping Confidence
Intervals" by Wright, Klein, and Wieczorek (2019)
<DOI:10.1080/00031305.2017.1392359> and "A Joint Confidence Region for an
Overall Ranking of Populations" by Klein, Wright, and Wieczorek (2020, in
press).
Author: Jerzy Wieczorek [cre, aut],
Joel Beard [ctb],
Andy Liaw [ctb],
Robert Gentleman [ctb],
Martin Maechler [ctb]
Maintainer: Jerzy Wieczorek <jerzywieczorek@gmail.com>
Diff between RankingProject versions 0.1.1 dated 2017-03-16 and 0.2.0 dated 2020-01-29
RankingProject-0.1.1/RankingProject/vignettes/tikzDictionary |only RankingProject-0.2.0/RankingProject/DESCRIPTION | 15 RankingProject-0.2.0/RankingProject/MD5 | 56 RankingProject-0.2.0/RankingProject/NAMESPACE | 56 RankingProject-0.2.0/RankingProject/NEWS | 14 RankingProject-0.2.0/RankingProject/NEWS.md |only RankingProject-0.2.0/RankingProject/R/RankPlot.R | 918 +++++----- RankingProject-0.2.0/RankingProject/R/RankPlotWithTable.R | 246 +- RankingProject-0.2.0/RankingProject/R/RankTable.R | 224 +- RankingProject-0.2.0/RankingProject/R/RankingProject.R | 88 RankingProject-0.2.0/RankingProject/R/Utils.R | 570 +++--- RankingProject-0.2.0/RankingProject/R/data.R | 67 RankingProject-0.2.0/RankingProject/README | 160 - RankingProject-0.2.0/RankingProject/build/vignette.rds |binary RankingProject-0.2.0/RankingProject/data/TravelTime2011.1dec.rda |only RankingProject-0.2.0/RankingProject/inst/doc/intro.R | 218 +- RankingProject-0.2.0/RankingProject/inst/doc/intro.Rmd | 370 ++-- RankingProject-0.2.0/RankingProject/inst/doc/intro.html | 846 ++++++--- RankingProject-0.2.0/RankingProject/inst/doc/joint.R |only RankingProject-0.2.0/RankingProject/inst/doc/joint.Rmd |only RankingProject-0.2.0/RankingProject/inst/doc/joint.pdf |only RankingProject-0.2.0/RankingProject/inst/doc/primer.R | 244 +- RankingProject-0.2.0/RankingProject/inst/doc/primer.Rmd | 367 ++- RankingProject-0.2.0/RankingProject/inst/doc/primer.pdf |binary RankingProject-0.2.0/RankingProject/man/RankPlot.Rd | 361 ++- RankingProject-0.2.0/RankingProject/man/RankPlotWithTable.Rd | 15 RankingProject-0.2.0/RankingProject/man/RankTable.Rd | 22 RankingProject-0.2.0/RankingProject/man/RankingProject.Rd | 2 RankingProject-0.2.0/RankingProject/man/TravelTime2011.1dec.Rd |only RankingProject-0.2.0/RankingProject/man/TravelTime2011.Rd | 1 RankingProject-0.2.0/RankingProject/vignettes/intro.Rmd | 370 ++-- RankingProject-0.2.0/RankingProject/vignettes/joint.Rmd |only RankingProject-0.2.0/RankingProject/vignettes/primer.Rmd | 367 ++- 33 files changed, 2975 insertions(+), 2622 deletions(-)
More information about RankingProject at CRAN
Permanent link
Title: Request <https://openblender.io> API Services
Description: Interface to make HTTP requests to 'OpenBlender' API services. Go to <https://openblender.io> for more information.
Author: Open Blender Inc. [cph],
Daniel V. Pinacho [aut, cre]
Maintainer: Daniel V. Pinacho <danielvpinacho@gmail.com>
Diff between openblender versions 0.3.4 dated 2019-12-11 and 0.3.5 dated 2020-01-29
DESCRIPTION | 9 ++-- MD5 | 8 ++-- NAMESPACE | 7 +-- R/get_observations.R | 4 ++ tests/testthat.R | 96 ++++++++++++++++++++++++--------------------------- 5 files changed, 61 insertions(+), 63 deletions(-)
Title: Easy Model-Builder Functions for 'OpenMx'
Description: Utilities for building certain kinds of common matrices and models in
the extended structural equation modeling package, 'OpenMx'.
Author: Michael D. Hunter [aut, cre],
Joshua N. Pritikin [ctb]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between EasyMx versions 0.2-1 dated 2017-10-19 and 0.2-11 dated 2020-01-29
DESCRIPTION | 10 +-- MD5 | 16 ++--- R/emxBehaviorGenetics.R | 105 ++++++++++++++++++++++++++-------- R/emxMatrixBuilders.R | 16 ++--- demo/jointFactor.R | 2 man/emxCholeskyComponent.Rd | 7 +- man/emxCommonPathwayComponent.Rd |only man/emxIndependentPathwayComponent.Rd |only man/emxMixtureModel.Rd | 23 +++++++ man/emxTwinModel.Rd | 7 +- 10 files changed, 136 insertions(+), 50 deletions(-)
Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 1.2.5 dated 2020-01-12 and 1.2.6 dated 2020-01-29
rqdatatable-1.2.5/rqdatatable/man/ex_data_table.default.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_drop_columns.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_extend.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_natural_join.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_non_sql.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_null_replace.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_order_expr.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_orderby.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_project.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_rename_columns.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_select_columns.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_select_rows.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_set_indicator.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_sql.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_table_source.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_theta_join.Rd |only rqdatatable-1.2.5/rqdatatable/man/ex_data_table.relop_unionall.Rd |only rqdatatable-1.2.6/rqdatatable/DESCRIPTION | 12 rqdatatable-1.2.6/rqdatatable/MD5 | 123 +++++----- rqdatatable-1.2.6/rqdatatable/NAMESPACE | 35 +- rqdatatable-1.2.6/rqdatatable/NEWS.md | 5 rqdatatable-1.2.6/rqdatatable/R/data_table_exports.R | 2 rqdatatable-1.2.6/rqdatatable/R/execute_parallel.R | 6 rqdatatable-1.2.6/rqdatatable/R/relop_drop_columns.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_extend.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_natural_join.R | 12 rqdatatable-1.2.6/rqdatatable/R/relop_non_sql.R | 30 +- rqdatatable-1.2.6/rqdatatable/R/relop_null_replace.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_order_expr.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_orderby.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_project.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_rename_columns.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_select_columns.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_select_rows.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_set_indicator.R | 10 rqdatatable-1.2.6/rqdatatable/R/relop_sql.R | 14 - rqdatatable-1.2.6/rqdatatable/R/relop_table_source.R | 14 - rqdatatable-1.2.6/rqdatatable/R/relop_theta_join.R | 12 rqdatatable-1.2.6/rqdatatable/R/relop_unionall.R | 8 rqdatatable-1.2.6/rqdatatable/R/rquery_fns.R | 108 +++++++- rqdatatable-1.2.6/rqdatatable/README.md | 35 +- rqdatatable-1.2.6/rqdatatable/inst/doc/GroupedSampling.html | 32 +- rqdatatable-1.2.6/rqdatatable/inst/doc/R_mapping.html | 4 rqdatatable-1.2.6/rqdatatable/inst/doc/logisticexample.html | 10 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_assoc.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_colon.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_d_bind_frames.R |only rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_df_types.R |only rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_drop_columns.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_natural_join.R | 6 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_non_sql.R | 6 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_null_replace.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_orderby.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_rename_columns.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_select_columns.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_select_rows.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_table_source.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_relop_unionall.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_rquery_fns.R | 2 rqdatatable-1.2.6/rqdatatable/inst/unit_tests/test_select_narrowing.R | 4 rqdatatable-1.2.6/rqdatatable/man/ex_data_table.Rd | 31 +- rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.default.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_drop_columns.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_extend.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_natural_join.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_non_sql.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_null_replace.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_order_expr.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_orderby.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_project.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_rename_columns.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_select_columns.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_select_rows.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_set_indicator.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_sql.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_table_source.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_theta_join.Rd |only rqdatatable-1.2.6/rqdatatable/man/ex_data_table_step.relop_unionall.Rd |only rqdatatable-1.2.6/rqdatatable/man/rq_df_funciton_node.Rd | 4 rqdatatable-1.2.6/rqdatatable/man/rq_df_grouped_funciton_node.Rd | 4 81 files changed, 360 insertions(+), 279 deletions(-)
Title: Diversity Forests
Description: Implements diversity forests as described in an
upcoming paper by the author of the package.
This package is a fork of the R package 'ranger' (main author:
Marvin N. Wright) that implements random forests using an efficient C++
implementation. More precisely, 'diversityForest' was written by modifying
the code of 'ranger', version 0.11.0. Therefore, details on further
functionalities of the code that are not presented in the help pages of
'diversityForest' are found in the help pages of 'ranger' (version 0.11.0).
The code in the example sections of the 'diversityForest' manual can be used
as a template for all basic application scenarios with respect to
classification, regression and survival prediction using univariate,
binary splitting. Some function arguments adopted from the 'ranger'
package are not be useable with diversity forests (for the current
package version).
Author: Roman Hornung [aut, cre], Marvin N. Wright [ctb, cph]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between diversityForest versions 0.1.0 dated 2020-01-08 and 0.2.0 dated 2020-01-29
diversityForest-0.1.0/diversityForest/inst/CITATION |only diversityForest-0.2.0/diversityForest/DESCRIPTION | 15 diversityForest-0.2.0/diversityForest/MD5 | 40 - diversityForest-0.2.0/diversityForest/NAMESPACE | 4 diversityForest-0.2.0/diversityForest/NEWS |only diversityForest-0.2.0/diversityForest/R/divfor.R | 71 ++- diversityForest-0.2.0/diversityForest/R/predict.R | 16 diversityForest-0.2.0/diversityForest/R/print.R | 38 + diversityForest-0.2.0/diversityForest/R/tunedivfor.R | 6 diversityForest-0.2.0/diversityForest/build/partial.rdb |binary diversityForest-0.2.0/diversityForest/man/divfor.Rd | 43 + diversityForest-0.2.0/diversityForest/man/predict.divfor.Rd | 15 diversityForest-0.2.0/diversityForest/man/print.divfor.Rd |only diversityForest-0.2.0/diversityForest/man/print.divfor.forest.Rd |only diversityForest-0.2.0/diversityForest/man/print.divfor.prediction.Rd |only diversityForest-0.2.0/diversityForest/man/print.tunedivfor.Rd |only diversityForest-0.2.0/diversityForest/man/tunedivfor.Rd | 6 diversityForest-0.2.0/diversityForest/src/Tree.cpp | 230 ++++------ diversityForest-0.2.0/diversityForest/src/TreeClassification.cpp | 67 -- diversityForest-0.2.0/diversityForest/src/TreeClassification.h | 4 diversityForest-0.2.0/diversityForest/src/TreeRegression.cpp | 135 +++++ diversityForest-0.2.0/diversityForest/src/TreeRegression.h | 4 diversityForest-0.2.0/diversityForest/src/TreeSurvival.cpp | 128 +++++ diversityForest-0.2.0/diversityForest/src/TreeSurvival.h | 2 24 files changed, 555 insertions(+), 269 deletions(-)
More information about diversityForest at CRAN
Permanent link
Title: Direct Labels for Multicolor Plots
Description: An extensible framework
for automatically placing direct labels onto multicolor 'lattice' or
'ggplot2' plots.
Label positions are described using Positioning Methods
which can be re-used across several different plots.
There are heuristics for examining "trellis" and "ggplot" objects
and inferring an appropriate Positioning Method.
Author: Toby Dylan Hocking
Maintainer: ORPHANED
Diff between directlabels versions 2018.05.22 dated 2018-05-25 and 2018.05.22.1 dated 2020-01-29
DESCRIPTION | 15 ++++++++++----- MD5 | 12 +++++++----- data/prostate.RData |only man/dl.combine.Rd | 2 -- man/positioning.functions.Rd | 4 ++-- man/prostate.Rd |only man/reduce.cex.lr.Rd | 2 +- tests/lasso.R | 7 +++---- 8 files changed, 23 insertions(+), 19 deletions(-)
Title: Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Description: Retrieve, map and summarize data from the 'VertNet.org'
archives (<http://vertnet.org/>). Functions allow searching by many
parameters, including 'taxonomic' names, places, and dates. In addition,
there is an interface for conducting spatially delimited searches, and
another for requesting large 'datasets' via email.
Author: Scott Chamberlain [aut, cre] (0000-0003-1444-9135),
Chris Ray [ctb],
Vijay Barve [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rvertnet versions 0.7.0 dated 2018-04-17 and 0.8.0 dated 2020-01-29
rvertnet-0.7.0/rvertnet/inst/doc/rvertnet_vignette.Rmd |only rvertnet-0.7.0/rvertnet/inst/doc/rvertnet_vignette.html |only rvertnet-0.7.0/rvertnet/inst/vign/rvertnet_vignette.Rmd |only rvertnet-0.7.0/rvertnet/inst/vign/rvertnet_vignette.md |only rvertnet-0.7.0/rvertnet/vignettes/rvertnet_vignette.Rmd |only rvertnet-0.8.0/rvertnet/DESCRIPTION | 18 rvertnet-0.8.0/rvertnet/LICENSE | 2 rvertnet-0.8.0/rvertnet/MD5 | 89 +- rvertnet-0.8.0/rvertnet/NAMESPACE | 1 rvertnet-0.8.0/rvertnet/NEWS.md | 17 rvertnet-0.8.0/rvertnet/R/bigsearch.R | 39 - rvertnet-0.8.0/rvertnet/R/rvertnet-package.R | 10 rvertnet-0.8.0/rvertnet/R/searchbyterm.R | 322 +++++++--- rvertnet-0.8.0/rvertnet/R/spatialsearch.R | 29 rvertnet-0.8.0/rvertnet/R/zzz.R | 4 rvertnet-0.8.0/rvertnet/README.md | 161 ++--- rvertnet-0.8.0/rvertnet/build/vignette.rds |binary rvertnet-0.8.0/rvertnet/inst/doc/rvertnet.Rmd |only rvertnet-0.8.0/rvertnet/inst/doc/rvertnet.html |only rvertnet-0.8.0/rvertnet/inst/vign/figure/unnamed-chunk-13-1.png |binary rvertnet-0.8.0/rvertnet/inst/vign/rvertnet.Rmd |only rvertnet-0.8.0/rvertnet/inst/vign/rvertnet.md |only rvertnet-0.8.0/rvertnet/man/bigsearch.Rd | 84 -- rvertnet-0.8.0/rvertnet/man/dump-defunct.Rd | 2 rvertnet-0.8.0/rvertnet/man/figures |only rvertnet-0.8.0/rvertnet/man/rvertnet-defunct.Rd | 12 rvertnet-0.8.0/rvertnet/man/rvertnet-package.Rd | 19 rvertnet-0.8.0/rvertnet/man/searchbyterm.Rd | 303 ++++++--- rvertnet-0.8.0/rvertnet/man/spatialsearch.Rd | 40 - rvertnet-0.8.0/rvertnet/man/traitsearch.Rd | 27 rvertnet-0.8.0/rvertnet/man/vert_id.Rd | 12 rvertnet-0.8.0/rvertnet/man/vertmap.Rd | 23 rvertnet-0.8.0/rvertnet/man/vertsearch.Rd | 23 rvertnet-0.8.0/rvertnet/man/vertsummary.Rd | 4 rvertnet-0.8.0/rvertnet/tests/fixtures |only rvertnet-0.8.0/rvertnet/tests/testthat.R | 2 rvertnet-0.8.0/rvertnet/tests/testthat/helper-rvertnet.R |only rvertnet-0.8.0/rvertnet/tests/testthat/test-bigsearch.R | 24 rvertnet-0.8.0/rvertnet/tests/testthat/test-searchbyterm.R | 78 +- rvertnet-0.8.0/rvertnet/tests/testthat/test-spatialsearch.R | 6 rvertnet-0.8.0/rvertnet/tests/testthat/test-traitsearch.R | 8 rvertnet-0.8.0/rvertnet/tests/testthat/test-vert_id.R | 10 rvertnet-0.8.0/rvertnet/tests/testthat/test-vertmap.R | 14 rvertnet-0.8.0/rvertnet/tests/testthat/test-vertsummary.R | 42 - rvertnet-0.8.0/rvertnet/vignettes/rvertnet.Rmd |only 45 files changed, 880 insertions(+), 545 deletions(-)
Title: Exploratory Graph Analysis - A Framework for Estimating the
Number of Dimensions in Multivariate Data Using Network
Psychometrics
Description: An implementation of the Exploratory Graph Analysis (EGA) framework for dimensionality assessment. EGA is part of a new area called network psychometrics that focuses on the estimation of undirected network models in psychological datasets. EGA estimates the number of dimensions or factors using graphical lasso or Triangulated Maximally Filtered Graph (TMFG) and a weighted network community analysis. A bootstrap method for verifying the stability of the estimation is also available. The fit of the structure suggested by EGA can be verified using confirmatory factor analysis and a direct way to convert the EGA structure to a confirmatory factor model is also implemented. Documentation and examples are available. Golino, H. F., & Epskamp, S. (2017) <doi:10.1371/journal.pone.0174035>. Golino, H. F., & Demetriou, A. (2017) <doi:10.1016/j.intell.2017.02.007> Golino, H., Shi, D., Garrido, L. E., Christensen, A. P., Nieto, M. D., Sadana, R., & Thiyagarajan, J. A. (2018) <doi:10.31234/osf.io/gzcre>. Christensen, A. P. & Golino, H.F. (2019) <doi:10.31234/osf.io/9deay>.
Author: Hudson Golino [aut, cre] (<https://orcid.org/0000-0002-1601-1447>),
Alexander Christensen [aut] (<https://orcid.org/0000-0002-9798-7037>),
Robert Moulder [ctb] (<https://orcid.org/0000-0001-7504-9560>)
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 0.9.0 dated 2020-01-18 and 0.9.1 dated 2020-01-29
DESCRIPTION | 23 ++++++++++------------ MD5 | 8 +++---- R/node.redundant.combine.R | 43 ++++++++++++++++++++++++++++++++++-------- inst/doc/Network_Scores.html | 4 +-- inst/doc/Redundant_Nodes.html | 4 +-- 5 files changed, 54 insertions(+), 28 deletions(-)
Title: Reproducible Research with a Table of R Codes
Description: Makes documents containing plots and tables from a table of R codes.
Can make "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents with or without R code.
In the package, modularized 'shiny' app codes are provided. These modules are intended for reuse across applications.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between rrtable versions 0.1.0 dated 2018-07-27 and 0.1.6 dated 2020-01-29
rrtable-0.1.0/rrtable/inst/doc/sampleData2.docx |only rrtable-0.1.0/rrtable/inst/doc/sampleData2.pdf |only rrtable-0.1.0/rrtable/inst/doc/sampleData2.pptx |only rrtable-0.1.0/rrtable/inst/doc/sampleData3.docx |only rrtable-0.1.0/rrtable/inst/doc/sampleData3.pdf |only rrtable-0.1.0/rrtable/inst/doc/sampleData3.pptx |only rrtable-0.1.6/rrtable/DESCRIPTION | 12 - rrtable-0.1.6/rrtable/MD5 | 146 +++++++++------ rrtable-0.1.6/rrtable/NAMESPACE | 34 ++- rrtable-0.1.6/rrtable/NEWS.md | 42 ++++ rrtable-0.1.6/rrtable/R/add_2ggplots.R | 117 +++++------- rrtable-0.1.6/rrtable/R/add_2plots.R |only rrtable-0.1.6/rrtable/R/add_Rcode.R | 89 +++++++++ rrtable-0.1.6/rrtable/R/add_flextable.R | 11 - rrtable-0.1.6/rrtable/R/add_ggplot.R | 19 +- rrtable-0.1.6/rrtable/R/add_img.R | 4 rrtable-0.1.6/rrtable/R/add_plot.R | 23 +- rrtable-0.1.6/rrtable/R/add_title_slide.R | 4 rrtable-0.1.6/rrtable/R/data2HTML.R | 27 +- rrtable-0.1.6/rrtable/R/data2office.R | 72 +++++-- rrtable-0.1.6/rrtable/R/data2pdf.R | 221 ------------------------ rrtable-0.1.6/rrtable/R/data2plotzip.R | 4 rrtable-0.1.6/rrtable/R/df2flextable.R | 50 ++++- rrtable-0.1.6/rrtable/R/file2pdf.R |only rrtable-0.1.6/rrtable/R/flextable2ztable.R | 12 - rrtable-0.1.6/rrtable/R/mytable2flextable.R | 2 rrtable-0.1.6/rrtable/R/plot2pptx.R |only rrtable-0.1.6/rrtable/R/pptxList.R | 177 ++++++++++++++++--- rrtable-0.1.6/rrtable/R/table2office.R |only rrtable-0.1.6/rrtable/R/writeCSVComment.R | 11 + rrtable-0.1.6/rrtable/R/ztable2.R | 2 rrtable-0.1.6/rrtable/R/ztable2flextable.R |only rrtable-0.1.6/rrtable/README.md | 16 - rrtable-0.1.6/rrtable/build/vignette.rds |binary rrtable-0.1.6/rrtable/inst/doc/Update.R |only rrtable-0.1.6/rrtable/inst/doc/Update.Rmd |only rrtable-0.1.6/rrtable/inst/doc/Update.html |only rrtable-0.1.6/rrtable/inst/doc/rrtable.R | 38 ++-- rrtable-0.1.6/rrtable/inst/doc/rrtable.Rmd | 16 - rrtable-0.1.6/rrtable/inst/doc/rrtable.html | 177 ++++++++++++------- rrtable-0.1.6/rrtable/inst/doc_examples |only rrtable-0.1.6/rrtable/inst/pptxList/app.R | 3 rrtable-0.1.6/rrtable/man/Rcode2df2.Rd |only rrtable-0.1.6/rrtable/man/Rcode2docx.Rd |only rrtable-0.1.6/rrtable/man/Rcode2flextable.Rd | 2 rrtable-0.1.6/rrtable/man/Rcode2office.Rd |only rrtable-0.1.6/rrtable/man/Rcode2pptx.Rd |only rrtable-0.1.6/rrtable/man/add_2flextables.Rd | 8 rrtable-0.1.6/rrtable/man/add_2ggplots.Rd | 15 + rrtable-0.1.6/rrtable/man/add_2plots.Rd | 25 +- rrtable-0.1.6/rrtable/man/add_Rcode.Rd | 2 rrtable-0.1.6/rrtable/man/add_anyplot.Rd |only rrtable-0.1.6/rrtable/man/add_flextable.Rd | 5 rrtable-0.1.6/rrtable/man/add_ggplot.Rd | 5 rrtable-0.1.6/rrtable/man/add_img.Rd | 12 + rrtable-0.1.6/rrtable/man/add_plot.Rd | 9 rrtable-0.1.6/rrtable/man/add_text.Rd | 15 + rrtable-0.1.6/rrtable/man/add_title.Rd | 3 rrtable-0.1.6/rrtable/man/data2HTML.Rd | 20 +- rrtable-0.1.6/rrtable/man/data2docx.Rd | 2 rrtable-0.1.6/rrtable/man/data2office.Rd | 21 +- rrtable-0.1.6/rrtable/man/data2pdf.Rd | 24 -- rrtable-0.1.6/rrtable/man/data2plotzip.Rd | 19 +- rrtable-0.1.6/rrtable/man/data2pptx.Rd | 2 rrtable-0.1.6/rrtable/man/df2flextable.Rd | 27 ++ rrtable-0.1.6/rrtable/man/exportCSV.Rd | 8 rrtable-0.1.6/rrtable/man/file2HTML.Rd |only rrtable-0.1.6/rrtable/man/file2docx.Rd |only rrtable-0.1.6/rrtable/man/file2pdf.Rd |only rrtable-0.1.6/rrtable/man/file2plotzip.Rd |only rrtable-0.1.6/rrtable/man/file2pptx.Rd |only rrtable-0.1.6/rrtable/man/flextable2ztable.Rd | 6 rrtable-0.1.6/rrtable/man/is_ggplot.Rd |only rrtable-0.1.6/rrtable/man/myplot2.Rd | 15 + rrtable-0.1.6/rrtable/man/mytable2flextable.Rd | 2 rrtable-0.1.6/rrtable/man/open_doc.Rd |only rrtable-0.1.6/rrtable/man/plot2docx.Rd |only rrtable-0.1.6/rrtable/man/plot2office.Rd |only rrtable-0.1.6/rrtable/man/plot2pptx.Rd |only rrtable-0.1.6/rrtable/man/plotPDF2.Rd | 11 - rrtable-0.1.6/rrtable/man/plotPNG2.Rd | 11 - rrtable-0.1.6/rrtable/man/pptxList.Rd | 9 rrtable-0.1.6/rrtable/man/readCSVComment.Rd |only rrtable-0.1.6/rrtable/man/table2docx.Rd |only rrtable-0.1.6/rrtable/man/table2office.Rd |only rrtable-0.1.6/rrtable/man/table2pptx.Rd |only rrtable-0.1.6/rrtable/man/ztable2flextable.Rd |only rrtable-0.1.6/rrtable/vignettes/Update.Rmd |only rrtable-0.1.6/rrtable/vignettes/rrtable.Rmd | 16 - 89 files changed, 990 insertions(+), 633 deletions(-)
Title: Optimos Prime Helps Calculate Autoecological Data for Biological
Species
Description: Calculates autoecological data (optima and tolerance ranges) of a biological species
given an environmental matrix. The package calculates by weighted averaging, using the number of occurrences to adjust the
tolerance assigned to each taxon to estimate optima and tolerance range in cases where taxa
have unequal occurrences. See the detailed methodology by Birks et al. (1990) <doi:10.1098/rstb.1990.0062>, and a
case example by Potapova and Charles (2003) <doi:10.1046/j.1365-2427.2003.01080.x>.
Author: María Belén Sathicq [aut],
María Mercedes Nicolosi Gelis [aut],
Joaquín Cochero [cre]
Maintainer: Joaquín Cochero <jcochero@ilpla.edu.ar>
Diff between optimos.prime versions 0.1.1 dated 2019-12-17 and 0.1.2 dated 2020-01-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/op_calculate.R | 18 ++++++++++++++++++ R/op_plot.R | 10 +++++++++- 4 files changed, 33 insertions(+), 7 deletions(-)
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autocomplete addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing' API;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre]
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 0.3.0 dated 2020-01-07 and 0.3.1 dated 2020-01-29
hereR-0.3.0/hereR/R/traffic.R |only hereR-0.3.0/hereR/man/traffic.Rd |only hereR-0.3.0/hereR/tests/testthat/test-traffic_flow.R |only hereR-0.3.0/hereR/tests/testthat/test-traffic_incidents.R |only hereR-0.3.1/hereR/DESCRIPTION | 8 hereR-0.3.1/hereR/MD5 | 45 +-- hereR-0.3.1/hereR/NAMESPACE | 2 hereR-0.3.1/hereR/NEWS.md | 7 hereR-0.3.1/hereR/R/checks.R | 17 - hereR-0.3.1/hereR/R/deprecated.R |only hereR-0.3.1/hereR/R/flow.R |only hereR-0.3.1/hereR/R/incident.R |only hereR-0.3.1/hereR/R/route_matrix.R | 37 +- hereR-0.3.1/hereR/R/sysdata.rda |binary hereR-0.3.1/hereR/README.md | 4 hereR-0.3.1/hereR/inst/doc/geocoder.html | 8 hereR-0.3.1/hereR/inst/doc/routing.html | 120 ++++----- hereR-0.3.1/hereR/inst/doc/traffic.R | 22 - hereR-0.3.1/hereR/inst/doc/traffic.Rmd | 24 - hereR-0.3.1/hereR/inst/doc/traffic.html | 32 +- hereR-0.3.1/hereR/inst/doc/transit.html | 66 ++--- hereR-0.3.1/hereR/inst/doc/weather.html | 183 +++++++------- hereR-0.3.1/hereR/man/flow.Rd |only hereR-0.3.1/hereR/man/hereR-deprecated.Rd |only hereR-0.3.1/hereR/man/incident.Rd |only hereR-0.3.1/hereR/man/route_matrix.Rd | 8 hereR-0.3.1/hereR/man/traffic-deprecated.Rd |only hereR-0.3.1/hereR/tests/testthat/test-flow.R |only hereR-0.3.1/hereR/tests/testthat/test-incident.R |only hereR-0.3.1/hereR/vignettes/traffic.Rmd | 24 - 30 files changed, 300 insertions(+), 307 deletions(-)
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/services/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] (Original framework for dplyr/database
interface),
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.0.4 dated 2019-10-26 and 1.0.5 dated 2020-01-29
AzureKusto-1.0.4/AzureKusto/tests/testthat/test_escape.R |only AzureKusto-1.0.5/AzureKusto/DESCRIPTION | 6 AzureKusto-1.0.5/AzureKusto/MD5 | 18 - AzureKusto-1.0.5/AzureKusto/NEWS.md | 4 AzureKusto-1.0.5/AzureKusto/R/kql-build.R | 10 AzureKusto-1.0.5/AzureKusto/build/vignette.rds |binary AzureKusto-1.0.5/AzureKusto/inst/doc/AzureKusto.html | 209 ++++++------ AzureKusto-1.0.5/AzureKusto/man/az_kusto.Rd | 2 AzureKusto-1.0.5/AzureKusto/man/az_kusto_database.Rd | 2 AzureKusto-1.0.5/AzureKusto/tests/testthat/test_escape.r |only AzureKusto-1.0.5/AzureKusto/tests/testthat/test_translate.r | 6 11 files changed, 132 insertions(+), 125 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Alvaro Florez Poveda, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 1.5 dated 2019-12-06 and 1.6 dated 2020-01-29
DESCRIPTION | 6 +++--- MD5 | 10 ++++++---- NAMESPACE | 7 +++++-- NEWS | 3 +++ R/CbC.R |only man/BimixedCbCContCont.Rd |only man/summary.gen.Rd | 2 ++ 7 files changed, 19 insertions(+), 9 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp'
for solving problems in combinatorics and computational mathematics.
Utilizes parallel programming via 'RcppThread' for maximal performance.
Also makes use of the RMatrix class from the 'RcppParallel' library.
There are combination/permutation functions with constraint parameters
that allow for generation of all combinations/permutations of a vector
meeting specific criteria (e.g. generating integer partitions/compositions
or finding all combinations such that the sum is between two bounds).
Capable of generating specific combinations/permutations (e.g. retrieve
only the nth lexicographical result) which sets up nicely for
parallelization as well as random sampling. Gmp support permits exploration
where the total number of results is large (e.g. comboSample(10000, 500,
n = 4)). Additionally, there are several high performance number theoretic
functions that are useful for problems common in computational mathematics.
Some of these functions make use of the fast integer division library
'libdivide'. The primeSieve function is based on the segmented sieve of
Eratosthenes implementation by Kim Walisch. It is also efficient for large
numbers by using the cache friendly improvements originally developed by
Tomás Oliveira. Finally, there is a prime counting function that implements
Legendre's formula based on the work of Kim Walisch.
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.3.5 dated 2020-01-26 and 2.3.6 dated 2020-01-29
DESCRIPTION | 8 +-- MD5 | 14 ++--- inst/NEWS.Rd | 10 +++- inst/doc/CombinatorialSampling.Rmd | 2 inst/doc/CombinatorialSampling.html | 2 src/ConstraintsMaster.cpp | 12 +++-- tests/testthat/testComboGeneral.R | 86 +++++++++++++++++++++--------------- vignettes/CombinatorialSampling.Rmd | 2 8 files changed, 83 insertions(+), 53 deletions(-)
Title: Generalized Ridge Trace Plots for Ridge Regression
Description: The genridge package introduces generalizations of the standard univariate
ridge trace plot used in ridge regression and related methods. These graphical methods
show both bias (actually, shrinkage) and precision, by plotting the covariance ellipsoids of the estimated
coefficients, rather than just the estimates themselves. 2D and 3D plotting methods are provided,
both in the space of the predictor variables and in the transformed space of the PCA/SVD of the
predictors.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between genridge versions 0.6-6 dated 2017-10-06 and 0.6.7 dated 2020-01-29
DESCRIPTION | 10 +++--- MD5 | 22 +++++++------ NEWS | 3 + R/biplot.pcaridge.R | 29 +++++++++-------- R/contourf.R | 79 +++++++++++++++++++++++------------------------- data/prostate.RData |only man/Detroit.Rd | 2 - man/genridge-package.Rd | 11 +++--- man/pairs.ridge.Rd | 13 +++---- man/plot.ridge.Rd | 15 ++++----- man/prostate.Rd |only man/ridge.Rd | 24 ++++++-------- man/traceplot.Rd | 2 - 13 files changed, 104 insertions(+), 106 deletions(-)
Title: Multiple Imputation by Chained Equations with Random Forests
Description: Multiple Imputation has been shown to
be a flexible method to impute missing values by
Van Buuren (2007) <doi:10.1177/0962280206074463>.
Expanding on this, random forests have been shown
to be an accurate model by Stekhoven and Buhlmann
<arXiv:1105.0828> to impute missing values in datasets.
They have the added benefits of returning out of bag
error and variable importance estimates, as well as
being simple to run in parallel.
Author: Sam Wilson [aut, cre]
Maintainer: Sam Wilson <samwilson303@gmail.com>
Diff between miceRanger versions 1.2.0 dated 2020-01-20 and 1.3.0 dated 2020-01-29
miceRanger-1.2.0/miceRanger/tests/testthat/test-completeData.R |only miceRanger-1.3.0/miceRanger/DESCRIPTION | 6 miceRanger-1.3.0/miceRanger/MD5 | 57 ++- miceRanger-1.3.0/miceRanger/NAMESPACE | 6 miceRanger-1.3.0/miceRanger/NEWS.md | 9 miceRanger-1.3.0/miceRanger/R/addDatasets.R | 52 ++- miceRanger-1.3.0/miceRanger/R/addIterations.R | 35 +- miceRanger-1.3.0/miceRanger/R/fillMissing.R |only miceRanger-1.3.0/miceRanger/R/getVarImps.R | 59 +++- miceRanger-1.3.0/miceRanger/R/impute.R |only miceRanger-1.3.0/miceRanger/R/imputeFromPred.R | 21 - miceRanger-1.3.0/miceRanger/R/miceRanger.R | 96 ++++-- miceRanger-1.3.0/miceRanger/R/plotDistributions.R | 7 miceRanger-1.3.0/miceRanger/R/plotImputationVariance.R | 30 +- miceRanger-1.3.0/miceRanger/R/print.R | 26 + miceRanger-1.3.0/miceRanger/R/runIterations.R | 16 - miceRanger-1.3.0/miceRanger/build/vignette.rds |binary miceRanger-1.3.0/miceRanger/data/sampleMiceDefs.RData |binary miceRanger-1.3.0/miceRanger/inst/doc/diagnosticPlotting.R |only miceRanger-1.3.0/miceRanger/inst/doc/diagnosticPlotting.Rmd |only miceRanger-1.3.0/miceRanger/inst/doc/diagnosticPlotting.html |only miceRanger-1.3.0/miceRanger/inst/doc/miceAlgorithm.R |only miceRanger-1.3.0/miceRanger/inst/doc/miceAlgorithm.Rmd |only miceRanger-1.3.0/miceRanger/inst/doc/miceAlgorithm.html |only miceRanger-1.3.0/miceRanger/inst/doc/usingMiceRanger.R | 63 +--- miceRanger-1.3.0/miceRanger/inst/doc/usingMiceRanger.Rmd | 147 ++-------- miceRanger-1.3.0/miceRanger/inst/doc/usingMiceRanger.html | 138 ++------- miceRanger-1.3.0/miceRanger/man/getVarImps.Rd | 15 - miceRanger-1.3.0/miceRanger/man/impute.Rd |only miceRanger-1.3.0/miceRanger/man/miceRanger.Rd | 48 +-- miceRanger-1.3.0/miceRanger/tests/testthat/test-imputeNew.R |only miceRanger-1.3.0/miceRanger/tests/testthat/test-miceRanger.R | 5 miceRanger-1.3.0/miceRanger/tests/testthat/test-sampleMiceObj.R | 29 + miceRanger-1.3.0/miceRanger/vignettes/diagnosticPlotting.Rmd |only miceRanger-1.3.0/miceRanger/vignettes/miceAlgorithm.Rmd |only miceRanger-1.3.0/miceRanger/vignettes/usingMiceRanger.Rmd | 147 ++-------- 36 files changed, 498 insertions(+), 514 deletions(-)
Title: Maps, Data and Methods Related to Guerry (1833) "Moral
Statistics of France"
Description: Maps of France in 1830, multivariate datasets from A.-M. Guerry and others, and statistical and
graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and
development of statistical and graphic methods for multivariate data in a geo-spatial context of historical interest.
Author: Michael Friendly [aut, cre],
Stephane Dray [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between Guerry versions 1.6-1 dated 2014-09-26 and 1.7.0 dated 2020-01-29
DESCRIPTION | 26 +++++++++++++------------- MD5 | 21 +++++++++++---------- NEWS | 12 ++++++++++++ build |only data/Angeville.RData |binary data/Guerry.RData |binary data/gfrance.RData |binary data/gfrance85.RData |binary man/Guerry-package.Rd | 43 +++++++++++++++++++------------------------ man/Guerry.Rd | 18 +++++++++--------- man/gfrance.Rd | 16 ++++++++++------ man/gfrance85.Rd | 10 ++++------ 12 files changed, 78 insertions(+), 68 deletions(-)
Title: Spatial Prediction for Function Value Data
Description: Kriging based methods are used for predicting functional data
(curves) with spatial dependence.
Author: Ramon Giraldo <rgiraldoh@unal.edu.co>, Pedro Delicado
<pedro.delicado@upc.edu>, Jorge Mateu <mateu@mat.uji.es>
Maintainer: Pedro Delicado <pedro.delicado@upc.edu>
Diff between geofd versions 1.0 dated 2015-10-05 and 2.0 dated 2020-01-29
DESCRIPTION | 10 MD5 | 20 NAMESPACE | 6 R/fit.tracevariog.R | 10 R/geofd-internal.R | 1025 ++++++++++++++++++++++++++++++++++++++++++------- R/plot.geofd.R | 4 man/fit.tracevariog.Rd | 27 - man/geofd-package.Rd | 3 man/okfd.Rd | 18 man/okfd.cv.Rd | 18 man/trace.variog.Rd | 14 11 files changed, 974 insertions(+), 181 deletions(-)
Title: Auxiliary Functions to Estimate Centers of Biodiversity
Description: Provides some easy-to-use functions to interpolate species range based on species occurrences and to estimate centers of biodiversity.
Author: Maximilian Lange, Sven Lautenbach, Claudia Raedig
Maintainer: Maximilian Lange <maximilian-lange@t-online.de>
Diff between sperich versions 1.5-7 dated 2015-07-08 and 1.5-8 dated 2020-01-29
DESCRIPTION | 13 ++++++------- MD5 | 14 ++++++++------ R/cclFun.R |only R/searchClusters.R | 10 +++------- man/cclFun.Rd |only man/dataset.all.species.Rd | 1 - man/dataset.height.Rd | 1 - man/dataset.landwater.Rd | 1 - man/exportAsGDAL.Rd | 2 ++ 9 files changed, 19 insertions(+), 23 deletions(-)
Title: Expressions with Statistical Details
Description: Statistical processing backend for 'ggstatsplot',
this package creates expressions with details from statistical tests.
Currently, it supports only the most common types of statistical
tests: parametric, nonparametric, robust, and bayesian versions of
t-test/anova, correlation analyses, contingency table analysis, and
meta-analysis.
Author: Indrajeet Patil [cre, aut, ctb]
(<https://orcid.org/0000-0003-1995-6531>),
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 0.2.1 dated 2020-01-23 and 0.3.0 dated 2020-01-29
DESCRIPTION | 21 +- MD5 | 47 ++-- NAMESPACE | 12 - NEWS.md | 10 - R/helpers_anova_expressions.R | 17 - R/helpers_bf_tests.R | 70 ++++--- R/helpers_effsize_ci.R | 58 +++++ R/helpers_meta_analysis_expressions.R | 80 ++++++++ R/reexports.R | 19 - R/specify_decimal_p.R |only README.md | 35 ++- inst/WORDLIST | 2 inst/doc/stats_details.html | 4 inst/doc/tests_and_coverage.Rmd | 157 ++++++++-------- inst/doc/tests_and_coverage.html | 282 ++++++++++++++++------------- man/bf_expr.Rd | 6 man/bf_meta.Rd | 11 + man/expr_meta_bayes.Rd |only man/reexports.Rd | 6 man/specify_decimal_p.Rd |only tests/README.md | 159 ++++++++-------- tests/testthat/test-expr_meta_bayes.R |only tests/testthat/test-expr_meta_parametric.R | 10 - tests/testthat/test-expr_meta_robust.R | 16 + tests/testthat/test-helpers_bf_tests.R | 6 tests/testthat/test-specify_decimal_p.R |only vignettes/tests_and_coverage.Rmd | 157 ++++++++-------- 27 files changed, 702 insertions(+), 483 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Monte Carlo Standard Errors for MCMC
Description: Provides tools for computing Monte Carlo standard
errors (MCSE) in Markov chain Monte Carlo (MCMC) settings. MCSE
computation for expectation and quantile estimators is
supported as well as multivariate estimations. The package also provides
functions for computing effective sample size and for plotting
Monte Carlo estimates versus sample size.
Author: James M. Flegal <jflegal@ucr.edu>,
John Hughes <j.hughes@ucdenver.edu>,
Dootika Vats <dootika@iitk.ac.in>, and
Ning Dai <daixx224@umn.edu>
Maintainer: Dootika Vats <dootika@iitk.ac.in>
Diff between mcmcse versions 1.3-2 dated 2017-07-04 and 1.4-1 dated 2020-01-29
mcmcse-1.3-2/mcmcse/tests |only mcmcse-1.3-2/mcmcse/vignettes/mcmcse_vignette-concordance.tex |only mcmcse-1.4-1/mcmcse/DESCRIPTION | 17 mcmcse-1.4-1/mcmcse/MD5 | 57 - mcmcse-1.4-1/mcmcse/NAMESPACE | 2 mcmcse-1.4-1/mcmcse/R/RcppExports.R | 18 mcmcse-1.4-1/mcmcse/R/confRegion.R | 29 mcmcse-1.4-1/mcmcse/R/mcmcse.R | 163 ++++- mcmcse-1.4-1/mcmcse/R/mcse.R |only mcmcse-1.4-1/mcmcse/R/mcse_initseq.R | 35 - mcmcse-1.4-1/mcmcse/R/mcse_multi.R | 295 ++++++++-- mcmcse-1.4-1/mcmcse/README.md |only mcmcse-1.4-1/mcmcse/build/vignette.rds |binary mcmcse-1.4-1/mcmcse/inst/doc/mcmcse_vignette.R | 88 +- mcmcse-1.4-1/mcmcse/inst/doc/mcmcse_vignette.Rnw | 92 +-- mcmcse-1.4-1/mcmcse/inst/doc/mcmcse_vignette.pdf |binary mcmcse-1.4-1/mcmcse/man/batchSize.Rd |only mcmcse-1.4-1/mcmcse/man/confRegion.Rd | 2 mcmcse-1.4-1/mcmcse/man/ess.Rd | 11 mcmcse-1.4-1/mcmcse/man/mcmcse-package.Rd | 18 mcmcse-1.4-1/mcmcse/man/mcse.Rd | 24 mcmcse-1.4-1/mcmcse/man/mcse.initseq.Rd | 14 mcmcse-1.4-1/mcmcse/man/mcse.mat.Rd | 23 mcmcse-1.4-1/mcmcse/man/mcse.multi.Rd | 23 mcmcse-1.4-1/mcmcse/man/minESS.Rd | 3 mcmcse-1.4-1/mcmcse/src/RcppExports.cpp | 56 + mcmcse-1.4-1/mcmcse/src/init.c | 20 mcmcse-1.4-1/mcmcse/src/mbmc.cpp | 2 mcmcse-1.4-1/mcmcse/src/mobmc.cpp |only mcmcse-1.4-1/mcmcse/src/msvec.cpp | 2 mcmcse-1.4-1/mcmcse/vignettes/mcmcse_vignette.Rnw | 92 +-- mcmcse-1.4-1/mcmcse/vignettes/mcse.bib | 41 + 32 files changed, 729 insertions(+), 398 deletions(-)
Title: Visualise Clusterings at Different Resolutions
Description: Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
clusterings as resolution increases.
Author: Luke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>),
Alicia Oshlack [aut] (<https://orcid.org/0000-0001-9788-5690>),
Andrea Rau [ctb],
Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>)
Maintainer: Luke Zappia <luke@lazappi.id.au>
Diff between clustree versions 0.4.1 dated 2019-08-21 and 0.4.2 dated 2020-01-29
DESCRIPTION | 17 +- MD5 | 51 +++--- NAMESPACE | 1 NEWS.md | 244 +++++++++++++++++++------------ R/clustree.R | 8 - R/clustree_overlay.R | 42 +++-- R/datasets.R | 3 README.md | 18 +- build/vignette.rds |binary data/sc_example.rda |binary inst/doc/clustree.R | 58 +++---- inst/doc/clustree.html | 203 +++++++++++-------------- man/add_node_labels.Rd | 10 + man/assert_colour_node_aes.Rd | 11 + man/assert_numeric_node_aes.Rd | 11 + man/build_tree_graph.Rd | 10 + man/calc_sc3_stability_cluster.Rd | 4 man/clustree.Rd | 56 +++++-- man/clustree_overlay.Rd | 79 +++++++--- man/iris_clusts.Rd | 4 man/overlay_node_points.Rd | 10 + man/plot_overlay_side.Rd | 24 ++- man/sc_example.Rd | 3 tests/testthat/test-aesthetics.R | 59 ++++++- tests/testthat/test-clustree-overlay.R | 97 ++++++++++++ tests/testthat/test-clustree.R | 60 +++++++ tests/testthat/test-overlay-aesthetics.R |only 27 files changed, 736 insertions(+), 347 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z (2007) <doi:10.1177/1536867X0700700203> ). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between chest versions 0.2.0 dated 2019-12-16 and 0.3.1 dated 2020-01-29
DESCRIPTION | 30 +++-- MD5 | 47 +++++---- NAMESPACE | 12 +- NEWS.md |only R/chest.R | 23 +++- R/chest_clogit.R | 90 ++++------------- R/chest_cox.R | 78 +++------------ R/chest_forest.R |only R/chest_glm.R | 98 ++++--------------- R/chest_lm.R | 90 ++++------------- R/chest_nb.R |only R/chest_plot.R |only R/chest_speedglm.R | 147 ++++++++--------------------- README.md | 10 - build/vignette.rds |binary inst/doc/chest-vignette.R | 91 +++++++++++++----- inst/doc/chest-vignette.Rmd | 113 ++++++++++++++++------ inst/doc/chest-vignette.html | 217 ++++++++++++++++++++----------------------- man/chest.Rd | 11 +- man/chest_clogit.Rd | 43 -------- man/chest_cox.Rd | 36 ------- man/chest_forest.Rd |only man/chest_glm.Rd | 48 --------- man/chest_lm.Rd | 39 ------- man/chest_nb.Rd |only man/chest_plot.Rd |only man/chest_speedglm.Rd | 56 ----------- vignettes/chest-vignette.Rmd | 113 ++++++++++++++++------ 28 files changed, 568 insertions(+), 824 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-17 1.0
2019-10-14 0.1-6
Title: Calculation and Visualization of the Impact Effect Size Measure
Description: A non-parametric effect size measure capturing changes in central tendency or shape of data distributions. The package provides the necessary functions to calculate and plot the Impact effect size measure between two groups.
Author: Jorn Lotsch[aut,cre], Alfred Ultsch[aut]
Maintainer: Jorn Lotsch <j.loetsch@em.uni-frankfurt.de>
Diff between ImpactEffectsize versions 0.3.0 dated 2020-01-14 and 0.3.1 dated 2020-01-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Impact.R | 28 ++++++++++++++++++++++------ 3 files changed, 27 insertions(+), 11 deletions(-)
More information about ImpactEffectsize at CRAN
Permanent link
Title: Forecasting Models for Tidy Time Series
Description: Provides a collection of commonly used univariate and multivariate
time series forecasting models including automatically selected exponential
smoothing (ETS) and autoregressive integrated moving average (ARIMA) models.
These models work within the 'fable' framework provided by the 'fabletools'
package, which provides the tools to evaluate, visualise, and combine models
in a workflow consistent with the tidyverse.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Gabriel Caceres [ctb] (NNETAR implementation)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fable versions 0.1.1 dated 2019-12-06 and 0.1.2 dated 2020-01-29
DESCRIPTION | 10 ++++---- MD5 | 46 ++++++++++++++++++++++----------------- NAMESPACE | 5 ++++ NEWS.md | 13 +++++++++++ R/00_specials.R | 2 - R/arima.R | 29 +++++++++++++++++++++--- R/croston.R |only R/ets.R | 9 ++++--- R/nnetar.R | 9 +++++-- R/utils.R | 4 ++- R/var.R | 8 ++++-- README.md | 6 +---- build/vignette.rds |binary inst/WORDLIST | 12 ++++++---- inst/doc/fable.R | 2 - inst/doc/fable.Rmd | 2 - inst/doc/fable.html | 17 +++++--------- inst/doc/transformations.html | 11 +++------ man/ARIMA.Rd | 22 +++++++++++++++++- man/CROSTON.Rd |only man/ETS.Rd | 4 +-- man/figures/README-example-1.png |binary man/fitted.croston.Rd |only man/forecast.croston.Rd |only man/residuals.croston.Rd |only man/tidy.croston.Rd |only vignettes/fable.Rmd | 2 - 27 files changed, 141 insertions(+), 72 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 42 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between distr6 versions 1.3.2 dated 2020-01-12 and 1.3.3 dated 2020-01-29
distr6-1.3.2/distr6/man/as.data.table.Rd |only distr6-1.3.3/distr6/DESCRIPTION | 16 distr6-1.3.3/distr6/MD5 | 256 +++++----- distr6-1.3.3/distr6/NAMESPACE | 5 distr6-1.3.3/distr6/NEWS.md | 65 -- distr6-1.3.3/distr6/R/Distribution.R | 12 distr6-1.3.3/distr6/R/Distribution_Kernel.R | 1 distr6-1.3.3/distr6/R/ParameterSet.R | 23 distr6-1.3.3/distr6/R/SDistribution_Multinomial.R | 3 distr6-1.3.3/distr6/R/SDistribution_MultivariateNormal.R | 3 distr6-1.3.3/distr6/R/Wrapper.R | 8 distr6-1.3.3/distr6/R/Wrapper_VectorDistribution.R | 24 distr6-1.3.3/distr6/R/distrSimulate.R |only distr6-1.3.3/distr6/R/lines.R | 3 distr6-1.3.3/distr6/R/plot.R | 41 + distr6-1.3.3/distr6/R/zzz.R | 15 distr6-1.3.3/distr6/build/vignette.rds |binary distr6-1.3.3/distr6/inst/doc/distr6.html | 6 distr6-1.3.3/distr6/man/Arcsine.Rd | 157 ++---- distr6-1.3.3/distr6/man/ArrayDistribution-deprecated.Rd | 104 ++-- distr6-1.3.3/distr6/man/Bernoulli.Rd | 153 ++--- distr6-1.3.3/distr6/man/Beta.Rd | 152 ++--- distr6-1.3.3/distr6/man/BetaNoncentral.Rd | 153 ++--- distr6-1.3.3/distr6/man/Binomial.Rd | 154 ++---- distr6-1.3.3/distr6/man/Categorical.Rd | 161 ++---- distr6-1.3.3/distr6/man/Cauchy.Rd | 161 ++---- distr6-1.3.3/distr6/man/ChiSquared.Rd | 152 ++--- distr6-1.3.3/distr6/man/ChiSquaredNoncentral.Rd | 153 ++--- distr6-1.3.3/distr6/man/Complex.Rd | 6 distr6-1.3.3/distr6/man/Cosine.Rd | 107 ++-- distr6-1.3.3/distr6/man/Degenerate.Rd | 159 ++---- distr6-1.3.3/distr6/man/Dirichlet.Rd | 153 ++--- distr6-1.3.3/distr6/man/DiscreteUniform.Rd | 153 ++--- distr6-1.3.3/distr6/man/Distribution.Rd | 148 ++--- distr6-1.3.3/distr6/man/DistributionWrapper.Rd | 118 ++-- distr6-1.3.3/distr6/man/Empirical.Rd | 160 ++---- distr6-1.3.3/distr6/man/Epanechnikov.Rd | 107 ++-- distr6-1.3.3/distr6/man/Exponential.Rd | 153 ++--- distr6-1.3.3/distr6/man/ExtendedReals.Rd | 6 distr6-1.3.3/distr6/man/FDistribution.Rd | 152 ++--- distr6-1.3.3/distr6/man/FDistributionNoncentral.Rd | 153 ++--- distr6-1.3.3/distr6/man/Frechet.Rd | 157 ++---- distr6-1.3.3/distr6/man/Gamma.Rd | 155 ++---- distr6-1.3.3/distr6/man/Geometric.Rd | 162 ++---- distr6-1.3.3/distr6/man/Gompertz.Rd | 157 ++---- distr6-1.3.3/distr6/man/Gumbel.Rd | 161 ++---- distr6-1.3.3/distr6/man/HuberizedDistribution.Rd | 104 ++-- distr6-1.3.3/distr6/man/Hypergeometric.Rd | 155 ++---- distr6-1.3.3/distr6/man/Integers.Rd | 8 distr6-1.3.3/distr6/man/Interval.Rd | 56 +- distr6-1.3.3/distr6/man/InverseGamma.Rd | 157 ++---- distr6-1.3.3/distr6/man/Kernel.Rd | 121 ++-- distr6-1.3.3/distr6/man/Laplace.Rd | 154 ++---- distr6-1.3.3/distr6/man/Logarithmic.Rd | 156 ++---- distr6-1.3.3/distr6/man/Logistic.Rd | 154 ++---- distr6-1.3.3/distr6/man/LogisticKernel.Rd | 107 ++-- distr6-1.3.3/distr6/man/Loglogistic.Rd | 157 ++---- distr6-1.3.3/distr6/man/Lognormal.Rd | 162 +++--- distr6-1.3.3/distr6/man/MixtureDistribution.Rd | 104 ++-- distr6-1.3.3/distr6/man/Multinomial.Rd | 156 ++---- distr6-1.3.3/distr6/man/MultivariateNormal.Rd | 155 ++---- distr6-1.3.3/distr6/man/Naturals.Rd | 8 distr6-1.3.3/distr6/man/NegIntegers.Rd | 8 distr6-1.3.3/distr6/man/NegRationals.Rd | 8 distr6-1.3.3/distr6/man/NegReals.Rd | 8 distr6-1.3.3/distr6/man/NegativeBinomial.Rd | 164 ++---- distr6-1.3.3/distr6/man/Normal.Rd | 162 ++---- distr6-1.3.3/distr6/man/NormalKernel.Rd | 107 ++-- distr6-1.3.3/distr6/man/ParameterSet.Rd | 22 distr6-1.3.3/distr6/man/Pareto.Rd | 153 ++--- distr6-1.3.3/distr6/man/Poisson.Rd | 152 ++--- distr6-1.3.3/distr6/man/PosIntegers.Rd | 8 distr6-1.3.3/distr6/man/PosNaturals.Rd | 6 distr6-1.3.3/distr6/man/PosRationals.Rd | 8 distr6-1.3.3/distr6/man/PosReals.Rd | 8 distr6-1.3.3/distr6/man/ProductDistribution.Rd | 104 ++-- distr6-1.3.3/distr6/man/Quartic.Rd | 107 ++-- distr6-1.3.3/distr6/man/Rationals.Rd | 8 distr6-1.3.3/distr6/man/Rayleigh.Rd | 152 ++--- distr6-1.3.3/distr6/man/Reals.Rd | 8 distr6-1.3.3/distr6/man/SDistribution.Rd | 146 ++--- distr6-1.3.3/distr6/man/Set.Rd | 50 - distr6-1.3.3/distr6/man/SetInterval.Rd | 52 +- distr6-1.3.3/distr6/man/Sigmoid.Rd | 107 ++-- distr6-1.3.3/distr6/man/Silverman.Rd | 107 ++-- distr6-1.3.3/distr6/man/StudentT.Rd | 152 ++--- distr6-1.3.3/distr6/man/StudentTNoncentral.Rd | 153 ++--- distr6-1.3.3/distr6/man/Triangular.Rd | 155 ++---- distr6-1.3.3/distr6/man/TriangularKernel.Rd | 107 ++-- distr6-1.3.3/distr6/man/Tricube.Rd | 107 ++-- distr6-1.3.3/distr6/man/Triweight.Rd | 107 ++-- distr6-1.3.3/distr6/man/TruncatedDistribution.Rd | 104 ++-- distr6-1.3.3/distr6/man/Uniform.Rd | 153 ++--- distr6-1.3.3/distr6/man/UniformKernel.Rd | 107 ++-- distr6-1.3.3/distr6/man/VectorDistribution.Rd | 108 ++-- distr6-1.3.3/distr6/man/Wald.Rd | 153 ++--- distr6-1.3.3/distr6/man/Weibull.Rd | 154 ++---- distr6-1.3.3/distr6/man/WeightedDiscrete.Rd | 160 ++---- distr6-1.3.3/distr6/man/as.data.table.ParameterSet.Rd |only distr6-1.3.3/distr6/man/cdf.Rd | 6 distr6-1.3.3/distr6/man/complement.SetInterval.Rd | 2 distr6-1.3.3/distr6/man/distr6-deprecated.Rd | 6 distr6-1.3.3/distr6/man/distrSimulate.Rd |only distr6-1.3.3/distr6/man/pdf.Rd | 8 distr6-1.3.3/distr6/man/power.SetInterval.Rd | 2 distr6-1.3.3/distr6/man/product.SetInterval.Rd | 2 distr6-1.3.3/distr6/man/quantile.Distribution.Rd | 4 distr6-1.3.3/distr6/man/setOperation.Rd | 2 distr6-1.3.3/distr6/man/setSymbol.Rd | 2 distr6-1.3.3/distr6/man/testContinuous.Rd | 4 distr6-1.3.3/distr6/man/testDiscrete.Rd | 4 distr6-1.3.3/distr6/man/testDistribution.Rd | 4 distr6-1.3.3/distr6/man/testDistributionList.Rd | 4 distr6-1.3.3/distr6/man/testLeptokurtic.Rd | 4 distr6-1.3.3/distr6/man/testMatrixvariate.Rd | 4 distr6-1.3.3/distr6/man/testMesokurtic.Rd | 4 distr6-1.3.3/distr6/man/testMixture.Rd | 4 distr6-1.3.3/distr6/man/testMultivariate.Rd | 4 distr6-1.3.3/distr6/man/testNegativeSkew.Rd | 4 distr6-1.3.3/distr6/man/testNoSkew.Rd | 4 distr6-1.3.3/distr6/man/testPlatykurtic.Rd | 4 distr6-1.3.3/distr6/man/testPositiveSkew.Rd | 4 distr6-1.3.3/distr6/man/testSymmetric.Rd | 4 distr6-1.3.3/distr6/man/testUnivariate.Rd | 4 distr6-1.3.3/distr6/man/union.SetInterval.Rd | 2 distr6-1.3.3/distr6/tests/testthat/Rplots.pdf |binary distr6-1.3.3/distr6/tests/testthat/test-DistMultinomial.R | 3 distr6-1.3.3/distr6/tests/testthat/test-DistMultivariateNormal.R | 8 distr6-1.3.3/distr6/tests/testthat/test-R62S3.R |only distr6-1.3.3/distr6/tests/testthat/test-distrSimulate.R |only distr6-1.3.3/distr6/tests/testthat/test-lines.R | 6 distr6-1.3.3/distr6/tests/testthat/test-plot.R | 40 + 132 files changed, 4715 insertions(+), 5075 deletions(-)
Title: Store and Operate with Arbitrarily Large Integers
Description: Multi-precision library that allows to store and operate with arbitrarily big integers without
loss of precision. It includes a large list of tools to work with them, like:
- Arithmetic and logic operators
- Modular-arithmetic operators
- Computer Number Theory utilities
- Probabilistic primality tests
- Factorization algorithms
- Random generators of diferent types of integers.
Author: Javier Leiva Cuadrado
Maintainer: Javier Leiva Cuadrado <jleivacuadrado@gmail.com>
Diff between VeryLargeIntegers versions 0.1.6 dated 2018-02-21 and 0.1.8 dated 2020-01-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/roots.R | 2 ++ man/roots.Rd | 4 +++- 4 files changed, 12 insertions(+), 8 deletions(-)
More information about VeryLargeIntegers at CRAN
Permanent link
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut] (<https://orcid.org/0000-0002-1642-628X>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Hilmar Lapp [aut] (<https://orcid.org/0000-0001-9107-0714>),
Kseniia Shumelchyk [aut],
Rutger Vos [aut] (<https://orcid.org/0000-0001-9254-7318>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.4.0 dated 2019-11-08 and 2.4.2 dated 2020-01-29
RNeXML-2.4.0/RNeXML/inst/doc/S4.R |only RNeXML-2.4.0/RNeXML/inst/doc/intro.R |only RNeXML-2.4.0/RNeXML/inst/doc/metadata.R |only RNeXML-2.4.0/RNeXML/inst/doc/simmap.R |only RNeXML-2.4.0/RNeXML/inst/doc/sparql.R |only RNeXML-2.4.2/RNeXML/DESCRIPTION | 8 RNeXML-2.4.2/RNeXML/MD5 | 110 RNeXML-2.4.2/RNeXML/NEWS.md | 5 RNeXML-2.4.2/RNeXML/R/nexml_write.R | 1 RNeXML-2.4.2/RNeXML/R/taxize_nexml.R | 2 RNeXML-2.4.2/RNeXML/build/vignette.rds |binary RNeXML-2.4.2/RNeXML/inst/doc/S4.Rmd | 96 RNeXML-2.4.2/RNeXML/inst/doc/S4.html | 53 RNeXML-2.4.2/RNeXML/inst/doc/intro.Rmd | 204 - RNeXML-2.4.2/RNeXML/inst/doc/intro.html | 156 RNeXML-2.4.2/RNeXML/inst/doc/metadata.Rmd | 1255 ++++++ RNeXML-2.4.2/RNeXML/inst/doc/metadata.html | 2396 +++++-------- RNeXML-2.4.2/RNeXML/inst/doc/simmap.Rmd | 42 RNeXML-2.4.2/RNeXML/inst/doc/simmap.html | 13 RNeXML-2.4.2/RNeXML/inst/doc/sparql.Rmd | 34 RNeXML-2.4.2/RNeXML/inst/doc/sparql.html | 16 RNeXML-2.4.2/RNeXML/man/add_basic_meta.Rd | 13 RNeXML-2.4.2/RNeXML/man/add_characters.Rd | 3 RNeXML-2.4.2/RNeXML/man/add_meta.Rd | 10 RNeXML-2.4.2/RNeXML/man/c-meta.Rd | 1 RNeXML-2.4.2/RNeXML/man/c-nexml-method.Rd | 1 RNeXML-2.4.2/RNeXML/man/figures/Figure1-1.png |only RNeXML-2.4.2/RNeXML/man/figures/unnamed-chunk-5-1.png |only RNeXML-2.4.2/RNeXML/man/figures/unnamed-chunk-8-1.png |only RNeXML-2.4.2/RNeXML/man/get_characters.Rd | 9 RNeXML-2.4.2/RNeXML/man/meta.Rd | 12 RNeXML-2.4.2/RNeXML/man/nexml-class.Rd | 6 RNeXML-2.4.2/RNeXML/man/nexml_add.Rd | 8 RNeXML-2.4.2/RNeXML/man/nexml_figshare.Rd | 13 RNeXML-2.4.2/RNeXML/man/nexml_get.Rd | 9 RNeXML-2.4.2/RNeXML/man/nexml_write.Rd | 11 RNeXML-2.4.2/RNeXML/man/simmap_to_nexml.Rd | 2 RNeXML-2.4.2/RNeXML/man/slot-ResourceMeta-method.Rd | 1 RNeXML-2.4.2/RNeXML/man/summary-nexml-method.Rd | 1 RNeXML-2.4.2/RNeXML/man/taxize_nexml.Rd | 10 RNeXML-2.4.2/RNeXML/tests/test-all.R | 1 RNeXML-2.4.2/RNeXML/tests/testthat/Rplots.pdf |binary RNeXML-2.4.2/RNeXML/tests/testthat/test_02_summary.R | 4 RNeXML-2.4.2/RNeXML/tests/testthat/test_ape.R | 35 RNeXML-2.4.2/RNeXML/tests/testthat/test_comp_analysis.R | 12 RNeXML-2.4.2/RNeXML/tests/testthat/test_meta.R | 47 RNeXML-2.4.2/RNeXML/tests/testthat/test_parsing.R | 16 RNeXML-2.4.2/RNeXML/tests/testthat/test_serializing.R | 16 RNeXML-2.4.2/RNeXML/tests/testthat/test_taxonomy.R | 17 RNeXML-2.4.2/RNeXML/tests/testthat/test_toplevel_api.R | 12 RNeXML-2.4.2/RNeXML/tests/testthat/test_validate.R | 14 RNeXML-2.4.2/RNeXML/vignettes/S4.Rmd | 96 RNeXML-2.4.2/RNeXML/vignettes/S4.Rmd.orig |only RNeXML-2.4.2/RNeXML/vignettes/intro-unnamed-chunk-5-1.png |only RNeXML-2.4.2/RNeXML/vignettes/intro.Rmd | 204 - RNeXML-2.4.2/RNeXML/vignettes/intro.Rmd.orig |only RNeXML-2.4.2/RNeXML/vignettes/metadata.Rmd | 1255 ++++++ RNeXML-2.4.2/RNeXML/vignettes/metadata.Rmd.orig |only RNeXML-2.4.2/RNeXML/vignettes/simmap-Figure1-1.png |only RNeXML-2.4.2/RNeXML/vignettes/simmap.Rmd | 42 RNeXML-2.4.2/RNeXML/vignettes/simmap.Rmd.orig |only RNeXML-2.4.2/RNeXML/vignettes/sparql-unnamed-chunk-8-1.png |only RNeXML-2.4.2/RNeXML/vignettes/sparql.Rmd | 34 RNeXML-2.4.2/RNeXML/vignettes/sparql.Rmd.orig |only 64 files changed, 4514 insertions(+), 1792 deletions(-)
Title: Czekanowski's Diagrams
Description: Allows for production of Czekanowski's Diagrams. See A. Vasterlund (2019) Master thesis, Linkoping University.
Author: Albin Vasterlund [aut],
Krzysztof Bartoszek [cre, aut, ths]
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between RMaCzek versions 1.2.0 dated 2020-01-21 and 1.3 dated 2020-01-29
RMaCzek-1.2.0/RMaCzek/data/skull_distances.RData |only RMaCzek-1.3/RMaCzek/DESCRIPTION | 9 +++-- RMaCzek-1.3/RMaCzek/MD5 | 36 ++++++++++++---------- RMaCzek-1.3/RMaCzek/NAMESPACE | 15 ++++++++- RMaCzek-1.3/RMaCzek/R/Um_factor.R | 21 ++++++------ RMaCzek-1.3/RMaCzek/R/czek_matrix.R | 20 +++++++++--- RMaCzek-1.3/RMaCzek/R/plot.czek_matrix.R | 7 +--- RMaCzek-1.3/RMaCzek/R/seriate_ga.R | 5 +-- RMaCzek-1.3/RMaCzek/R/utils_czek_matrix.R |only RMaCzek-1.3/RMaCzek/data/skulls_distances.RData |only RMaCzek-1.3/RMaCzek/man/RMaCzek-internal.Rd | 1 RMaCzek-1.3/RMaCzek/man/RMaCzek.Rd | 4 +- RMaCzek-1.3/RMaCzek/man/Um_factor.Rd | 4 +- RMaCzek-1.3/RMaCzek/man/czek_matrix.Rd | 18 ++++++++--- RMaCzek-1.3/RMaCzek/man/internet_availability.Rd | 2 - RMaCzek-1.3/RMaCzek/man/manual_reorder.Rd |only RMaCzek-1.3/RMaCzek/man/plot.czek_matrix.Rd | 7 +--- RMaCzek-1.3/RMaCzek/man/print.czek_matrix.Rd |only RMaCzek-1.3/RMaCzek/man/print.czek_matrix_dist.Rd |only RMaCzek-1.3/RMaCzek/man/seals_similarities.Rd | 6 +-- RMaCzek-1.3/RMaCzek/man/skulls_distances.Rd | 2 - RMaCzek-1.3/RMaCzek/man/urns.Rd | 4 +- 22 files changed, 98 insertions(+), 63 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between av versions 0.4.0 dated 2020-01-19 and 0.5.0 dated 2020-01-29
DESCRIPTION | 21 +++--- LICENSE | 2 MD5 | 51 +++++++-------- NAMESPACE | 2 NEWS | 8 ++ R/capture.R | 9 +- R/demo.R | 2 R/encode.R | 2 R/fft.R | 82 ++++++++++++++++-------- R/images.R | 2 R/info.R | 7 +- cleanup |only configure | 20 +++--- man/capturing.Rd | 5 - man/demo.Rd | 3 man/encoding.Rd | 3 man/formats.Rd | 3 man/info.Rd | 6 + man/logging.Rd | 3 man/read_audio.Rd | 54 ++++++++++------ src/fft.c | 145 +++++++++++++++++++++++++++++++++++++++----- src/info.c | 8 +- src/init.c | 6 + src/video.c | 21 ++---- tests/testthat/test-audio.R | 19 ++++- tests/testthat/test-fft.R | 31 ++++++++- tests/testthat/test-video.R | 16 ++-- 27 files changed, 375 insertions(+), 156 deletions(-)
Title: Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Description: Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A), a snow accumulation and melt model (CemaNeige) and the associated functions for their calibration and evaluation. Use help(airGR) for package description and references.
Author: Laurent Coron [aut, trl] (<https://orcid.org/0000-0002-1503-6204>),
Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>),
Guillaume Thirel [aut] (<https://orcid.org/0000-0002-1444-1830>),
Charles Perrin [aut, ths] (<https://orcid.org/0000-0001-8552-1881>),
Claude Michel [aut, ths],
Vazken Andréassian [ctb, ths] (<https://orcid.org/0000-0001-7124-9303>),
François Bourgin [ctb] (<https://orcid.org/0000-0002-2820-7260>,
'Parameter estimation' vignettes),
Pierre Brigode [ctb] (<https://orcid.org/0000-0001-8257-0741>),
Nicolas Le Moine [ctb],
Thibaut Mathevet [ctb] (<https://orcid.org/0000-0002-4142-4454>),
Safouane Mouelhi [ctb],
Ludovic Oudin [ctb] (<https://orcid.org/0000-0002-3712-0933>),
Raji Pushpalatha [ctb],
Audrey Valéry [ctb]
Maintainer: Olivier Delaigue <airGR@inrae.fr>
Diff between airGR versions 1.4.3.52 dated 2020-01-21 and 1.4.3.60 dated 2020-01-29
DESCRIPTION | 8 +-- MD5 | 86 ++++++++++++++++++------------------ NEWS.md | 12 ++++- R/Imax.R | 2 README.md | 11 ++-- inst/CITATION | 3 - inst/doc/V01_get_started.R | 8 ++- inst/doc/V01_get_started.Rmd | 15 +++--- inst/doc/V01_get_started.html | 31 ++++++++++-- man/BasinInfo.Rd | 16 +++--- man/Calibration.Rd | 17 +++---- man/Calibration_Michel.Rd | 20 ++++---- man/CreateCalibOptions.Rd | 16 +++--- man/CreateIniStates.Rd | 19 ++++--- man/CreateInputsCrit.Rd | 18 +++---- man/CreateInputsModel.Rd | 14 ++--- man/CreateRunOptions.Rd | 22 ++++----- man/DataAltiExtrapolation_Valery.Rd | 14 ++--- man/ErrorCrit.Rd | 9 ++- man/ErrorCrit_KGE.Rd | 10 ++-- man/ErrorCrit_KGE2.Rd | 10 ++-- man/ErrorCrit_NSE.Rd | 10 ++-- man/ErrorCrit_RMSE.Rd | 12 ++--- man/Imax.Rd | 13 ++--- man/Param_Sets_GR4J.Rd | 14 ++--- man/RunModel.Rd | 12 ++--- man/RunModel_CemaNeige.Rd | 10 ++-- man/RunModel_CemaNeigeGR4H.Rd | 10 ++-- man/RunModel_CemaNeigeGR4J.Rd | 10 ++-- man/RunModel_CemaNeigeGR5H.Rd | 10 ++-- man/RunModel_CemaNeigeGR5J.Rd | 10 ++-- man/RunModel_CemaNeigeGR6J.Rd | 10 ++-- man/RunModel_GR1A.Rd | 10 ++-- man/RunModel_GR2M.Rd | 10 ++-- man/RunModel_GR4H.Rd | 10 ++-- man/RunModel_GR4J.Rd | 10 ++-- man/RunModel_GR5H.Rd | 10 ++-- man/RunModel_GR5J.Rd | 10 ++-- man/RunModel_GR6J.Rd | 10 ++-- man/SeriesAggreg.Rd | 20 ++++---- man/TransfoParam.Rd | 10 ++-- man/airGR.Rd | 8 +-- man/plot.OutputsModel.Rd | 24 +++++----- vignettes/V01_get_started.Rmd | 15 +++--- 44 files changed, 338 insertions(+), 291 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Alexandros Kokkalis [ctb],
Ibrahim Umar [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 3.3-2 dated 2020-01-07 and 3.3-3 dated 2020-01-29
icesTAF-3.3-2/icesTAF/data/catage.long.rda |only icesTAF-3.3-2/icesTAF/data/catage.taf.rda |only icesTAF-3.3-2/icesTAF/data/catage.xtab.rda |only icesTAF-3.3-2/icesTAF/data/summary.taf.rda |only icesTAF-3.3-2/icesTAF/data/taf.colors.rda |only icesTAF-3.3-3/icesTAF/DESCRIPTION | 8 icesTAF-3.3-3/icesTAF/MD5 | 48 ++-- icesTAF-3.3-3/icesTAF/NEWS | 9 icesTAF-3.3-3/icesTAF/R/download.R | 3 icesTAF-3.3-3/icesTAF/R/download.github.R | 3 icesTAF-3.3-3/icesTAF/R/draft.data.R | 8 icesTAF-3.3-3/icesTAF/R/draft.software.R | 3 icesTAF-3.3-3/icesTAF/R/icesTAF-package.R | 3 icesTAF-3.3-3/icesTAF/R/msg.R | 2 icesTAF-3.3-3/icesTAF/R/process.bib.R | 135 -------------- icesTAF-3.3-3/icesTAF/R/taf.bootstrap.R | 2 icesTAF-3.3-3/icesTAF/data/catage.long.R |only icesTAF-3.3-3/icesTAF/data/catage.taf.R |only icesTAF-3.3-3/icesTAF/data/catage.xtab.R |only icesTAF-3.3-3/icesTAF/data/summary.taf.R |only icesTAF-3.3-3/icesTAF/data/taf.colors.R |only icesTAF-3.3-3/icesTAF/man/download.Rd | 3 icesTAF-3.3-3/icesTAF/man/download.github.Rd | 3 icesTAF-3.3-3/icesTAF/man/draft.data.Rd | 8 icesTAF-3.3-3/icesTAF/man/draft.software.Rd | 3 icesTAF-3.3-3/icesTAF/man/icesTAF-package.Rd | 3 icesTAF-3.3-3/icesTAF/man/msg.Rd | 2 icesTAF-3.3-3/icesTAF/man/process.bib.Rd | 135 -------------- icesTAF-3.3-3/icesTAF/man/taf.bootstrap.Rd | 2 icesTAF-3.3-3/icesTAF/tests/Examples/icesTAF-Ex.Rout.save | 6 30 files changed, 75 insertions(+), 314 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for developing models and time series functions for 'fable' and extension packages. These tools support a consistent and tidy interface for time series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
George Athanasopoulos [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.1.1 dated 2019-09-16 and 0.1.2 dated 2020-01-29
fabletools-0.1.1/fabletools/man/definitions.Rd |only fabletools-0.1.1/fabletools/man/new-dcmp-class.Rd |only fabletools-0.1.1/fabletools/man/new_decomposition_definition.Rd |only fabletools-0.1.1/fabletools/man/scale_tsibble.Rd |only fabletools-0.1.2/fabletools/DESCRIPTION | 17 - fabletools-0.1.2/fabletools/MD5 | 110 ++++------ fabletools-0.1.2/fabletools/NAMESPACE | 16 - fabletools-0.1.2/fabletools/NEWS.md | 25 ++ fabletools-0.1.2/fabletools/R/accuracy.R | 14 + fabletools-0.1.2/fabletools/R/dable.R | 12 - fabletools-0.1.2/fabletools/R/definitions.R | 109 --------- fabletools-0.1.2/fabletools/R/fable.R | 10 fabletools-0.1.2/fabletools/R/features.R | 2 fabletools-0.1.2/fabletools/R/forecast.R | 3 fabletools-0.1.2/fabletools/R/frequency.R | 11 - fabletools-0.1.2/fabletools/R/ggplot_scales.R | 46 ---- fabletools-0.1.2/fabletools/R/hilo.R | 1 fabletools-0.1.2/fabletools/R/interpolate.R | 6 fabletools-0.1.2/fabletools/R/mable.R | 18 + fabletools-0.1.2/fabletools/R/model.R | 23 +- fabletools-0.1.2/fabletools/R/model_combination.R | 15 + fabletools-0.1.2/fabletools/R/model_decomposition.R | 29 +- fabletools-0.1.2/fabletools/R/model_null.R | 5 fabletools-0.1.2/fabletools/R/plot.R | 46 +++- fabletools-0.1.2/fabletools/R/reconciliation.R | 44 ++++ fabletools-0.1.2/fabletools/R/stream.R | 22 -- fabletools-0.1.2/fabletools/R/utils.R | 1 fabletools-0.1.2/fabletools/build/fabletools.pdf |binary fabletools-0.1.2/fabletools/inst/WORDLIST | 6 fabletools-0.1.2/fabletools/man/MAAPE.Rd |only fabletools-0.1.2/fabletools/man/accuracy.Rd | 6 fabletools-0.1.2/fabletools/man/aggregate_key.Rd | 2 fabletools-0.1.2/fabletools/man/as-dable.Rd | 6 fabletools-0.1.2/fabletools/man/autoplot.dcmp_ts.Rd | 6 fabletools-0.1.2/fabletools/man/autoplot.fbl_ts.Rd | 6 fabletools-0.1.2/fabletools/man/combination_model.Rd | 3 fabletools-0.1.2/fabletools/man/dable.Rd | 3 fabletools-0.1.2/fabletools/man/decomposition_model.Rd | 15 - fabletools-0.1.2/fabletools/man/fcdist.Rd | 3 fabletools-0.1.2/fabletools/man/feature_set.Rd | 2 fabletools-0.1.2/fabletools/man/forecast.Rd | 3 fabletools-0.1.2/fabletools/man/freq_tools.Rd | 3 fabletools-0.1.2/fabletools/man/generate.mdl_df.Rd | 8 fabletools-0.1.2/fabletools/man/geom_forecast.Rd | 30 +- fabletools-0.1.2/fabletools/man/guide_level.Rd | 4 fabletools-0.1.2/fabletools/man/min_trace.Rd | 7 fabletools-0.1.2/fabletools/man/model.Rd | 9 fabletools-0.1.2/fabletools/man/new-model-class.Rd | 19 + fabletools-0.1.2/fabletools/man/point_accuracy_measures.Rd | 12 - fabletools-0.1.2/fabletools/man/reexports.Rd | 4 fabletools-0.1.2/fabletools/man/register_feature.Rd | 2 fabletools-0.1.2/fabletools/man/scale_level.Rd | 24 +- fabletools-0.1.2/fabletools/man/stream.Rd | 3 fabletools-0.1.2/fabletools/man/traverse.Rd | 9 fabletools-0.1.2/fabletools/tests/testthat/Rplots.pdf |only fabletools-0.1.2/fabletools/tests/testthat/setup-data.R | 6 fabletools-0.1.2/fabletools/tests/testthat/test-accuracy.R | 10 fabletools-0.1.2/fabletools/tests/testthat/test-decomposition-model.R | 2 fabletools-0.1.2/fabletools/tests/testthat/test-mable.R | 9 59 files changed, 422 insertions(+), 385 deletions(-)
Title: Explore Your Data Interactively
Description: Provides a shiny-based front end (the 'ExPanD' app) and
a set of functions for exploratory data analysis. Run as a web-based
app, 'ExPanD' enables users to assess the robustness of empirical evidence
without providing them access to the underlying data. You can export a
notebook containing the analysis of 'ExPanD' and/or use the functions of the
package to support your exploratory data analysis workflow. Refer to the
vignettes of the package for more information on how to use 'ExPanD' and/or
the functions of this package.
Author: Joachim Gassen [aut, cre] (<https://orcid.org/0000-0003-4364-2911>)
Maintainer: Joachim Gassen <gassen@wiwi.hu-berlin.de>
Diff between ExPanDaR versions 0.5.0 dated 2020-01-10 and 0.5.1 dated 2020-01-29
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 53 ++++++++------ NAMESPACE | 2 NEWS.md | 60 +++++++++++++--- R/ExPanD.R | 54 +++++++++++---- R/prepapre_correlation_graph.R | 10 +- build/vignette.rds |binary data/worldbank.RData |binary data/worldbank_data_def.RData |binary data/worldbank_var_def.RData |binary inst/application/server.R | 74 ++++++++++++-------- inst/application/server_components_displays.R | 2 inst/application/server_components_ui.R | 93 ++++++++++++++++---------- inst/application/server_create_notebook.R | 4 - inst/application/server_dynamic_ui.R | 2 inst/application/server_utility_functions.R | 13 +++ inst/doc/ExPanD_notebook.R |only inst/doc/ExPanD_notebook.Rmd |only inst/doc/ExPanD_notebook.html |only inst/doc/ExPanDaR-functions.html | 4 - inst/doc/customize_ExPanD.Rmd | 2 inst/doc/customize_ExPanD.html | 6 - inst/doc/use_ExPanD.Rmd | 6 - inst/doc/use_ExPanD.html | 10 +- man/ExPanD.Rd | 14 ++- vignettes/ExPanD_notebook.Rmd |only vignettes/customize_ExPanD.Rmd | 2 vignettes/figures/expand_export_button.png |only vignettes/use_ExPanD.Rmd | 6 - 30 files changed, 277 insertions(+), 150 deletions(-)
Title: Table One for 'Latex', 'Word', and 'Html' 'R Markdown' Documents
Description: Table one is a tabular description of
characteristics, e.g., demographics of patients in a clinical trial,
presented overall and also stratified by a categorical variable, e.g.
treatment group. There are many excellent packages available to
create table one. This package focuses on providing table one objects
that seamlessly fit into 'R Markdown' analyses.
Author: Byron Jaeger [aut, cre] (<https://orcid.org/0000-0001-7399-2299>),
Boyi Guo [ctb]
Maintainer: Byron Jaeger <bcjaeger@uab.edu>
Diff between tibbleOne versions 0.1.0 dated 2019-10-28 and 0.1.1 dated 2020-01-29
DESCRIPTION | 10 - MD5 | 47 +++--- NAMESPACE | 2 NEWS.md |only R/gen_tbl_value.R | 3 R/parse_formula.R | 276 +++++++++++++++++++---------------------- R/tibble_one.R | 3 R/to_kable.R | 10 + README.md | 2 build/tibbleOne.pdf |binary build/vignette.rds |binary inst/doc/start_here.R | 16 +- inst/doc/start_here.Rmd | 6 inst/doc/start_here.html | 206 ++++++++++++++++++++---------- man/adapt_round.Rd | 38 ++--- man/build_meta.Rd | 108 ++++++++-------- man/pbc_tbl1.Rd | 94 ++++++------- man/select_labelled.Rd | 38 ++--- man/set_variable_labels.Rd | 192 ++++++++++++++-------------- man/tibbleOne-package.Rd | 66 ++++----- man/tibble_one.Rd | 181 ++++++++++++++------------ man/to_kable.Rd | 122 +++++++++--------- man/to_word.Rd | 94 +++++++------ tests/testthat/test-to_kable.R | 2 vignettes/start_here.Rmd | 6 25 files changed, 808 insertions(+), 714 deletions(-)
Title: Enhanced Reading and Writing for 'SQLite' Databases
Description: Reads and writes data frames to 'SQLite'
databases while preserving time zones (for POSIXct columns),
projections (for 'sfc' columns), units (for 'units' columns), levels
(for factors and ordered factors) and classes for logical, Date and
'hms' columns. It also logs changes to tables and provides more
informative error messages.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Sebastian Dalgarno [ctb] (<https://orcid.org/0000-0002-3658-4517>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between readwritesqlite versions 0.0.2 dated 2019-07-23 and 0.1.0 dated 2020-01-29
readwritesqlite-0.0.2/readwritesqlite/man/check_sqlite_connection.Rd |only readwritesqlite-0.1.0/readwritesqlite/DESCRIPTION | 35 readwritesqlite-0.1.0/readwritesqlite/MD5 | 139 +- readwritesqlite-0.1.0/readwritesqlite/NAMESPACE | 11 readwritesqlite-0.1.0/readwritesqlite/NEWS.md | 17 readwritesqlite-0.1.0/readwritesqlite/R/check.R | 117 +- readwritesqlite-0.1.0/readwritesqlite/R/chk.R |only readwritesqlite-0.1.0/readwritesqlite/R/connection.R | 38 readwritesqlite-0.1.0/readwritesqlite/R/convert.R | 13 readwritesqlite-0.1.0/readwritesqlite/R/data.R | 6 readwritesqlite-0.1.0/readwritesqlite/R/db.R | 82 - readwritesqlite-0.1.0/readwritesqlite/R/deprecated.R | 65 - readwritesqlite-0.1.0/readwritesqlite/R/describe.R | 79 - readwritesqlite-0.1.0/readwritesqlite/R/drop.R |only readwritesqlite-0.1.0/readwritesqlite/R/init.R | 73 - readwritesqlite-0.1.0/readwritesqlite/R/internal.R | 52 readwritesqlite-0.1.0/readwritesqlite/R/log.R | 21 readwritesqlite-0.1.0/readwritesqlite/R/meta.R | 242 ++-- readwritesqlite-0.1.0/readwritesqlite/R/namespace.R | 4 readwritesqlite-0.1.0/readwritesqlite/R/query.R | 14 readwritesqlite-0.1.0/readwritesqlite/R/read.R | 44 readwritesqlite-0.1.0/readwritesqlite/R/rename.R |only readwritesqlite-0.1.0/readwritesqlite/R/utils.R | 8 readwritesqlite-0.1.0/readwritesqlite/R/validate.R | 53 readwritesqlite-0.1.0/readwritesqlite/R/vld.R |only readwritesqlite-0.1.0/readwritesqlite/R/write.R | 285 ++--- readwritesqlite-0.1.0/readwritesqlite/README.md | 64 - readwritesqlite-0.1.0/readwritesqlite/build/vignette.rds |binary readwritesqlite-0.1.0/readwritesqlite/inst/doc/using-readwritesqlite.R | 18 readwritesqlite-0.1.0/readwritesqlite/inst/doc/using-readwritesqlite.html | 180 +-- readwritesqlite-0.1.0/readwritesqlite/man/chk_sqlite_conn.Rd |only readwritesqlite-0.1.0/readwritesqlite/man/figures |only readwritesqlite-0.1.0/readwritesqlite/man/readwritesqlite-package.Rd | 15 readwritesqlite-0.1.0/readwritesqlite/man/rws_connect.Rd | 6 readwritesqlite-0.1.0/readwritesqlite/man/rws_describe_meta.Rd | 5 readwritesqlite-0.1.0/readwritesqlite/man/rws_describe_meta.character.Rd | 7 readwritesqlite-0.1.0/readwritesqlite/man/rws_describe_meta.data.frame.Rd | 8 readwritesqlite-0.1.0/readwritesqlite/man/rws_disconnect.Rd | 6 readwritesqlite-0.1.0/readwritesqlite/man/rws_drop_table.Rd |only readwritesqlite-0.1.0/readwritesqlite/man/rws_list_tables.Rd | 2 readwritesqlite-0.1.0/readwritesqlite/man/rws_query.Rd | 2 readwritesqlite-0.1.0/readwritesqlite/man/rws_read.Rd | 7 readwritesqlite-0.1.0/readwritesqlite/man/rws_read.SQLiteConnection.Rd | 13 readwritesqlite-0.1.0/readwritesqlite/man/rws_read.character.Rd | 15 readwritesqlite-0.1.0/readwritesqlite/man/rws_read_init.Rd | 2 readwritesqlite-0.1.0/readwritesqlite/man/rws_read_log.Rd | 2 readwritesqlite-0.1.0/readwritesqlite/man/rws_read_meta.Rd | 2 readwritesqlite-0.1.0/readwritesqlite/man/rws_read_table.Rd | 7 readwritesqlite-0.1.0/readwritesqlite/man/rws_rename_column.Rd |only readwritesqlite-0.1.0/readwritesqlite/man/rws_rename_table.Rd |only readwritesqlite-0.1.0/readwritesqlite/man/rws_write.Rd | 31 readwritesqlite-0.1.0/readwritesqlite/man/rws_write.data.frame.Rd | 30 readwritesqlite-0.1.0/readwritesqlite/man/rws_write.environment.Rd | 33 readwritesqlite-0.1.0/readwritesqlite/man/rws_write.list.Rd | 34 readwritesqlite-0.1.0/readwritesqlite/man/vld_sqlite_conn.Rd |only readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-check.R | 102 + readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-chk.R |only readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-connection.R | 10 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-db.R | 30 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-dependencies.R | 32 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-describe.R | 94 + readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-drop.R |only readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-init.R | 181 +-- readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-internal.R | 39 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-log.R | 50 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-meta.R | 547 +++++----- readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-query.R | 36 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-read.R | 25 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-rename.R |only readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-to-upper.R | 18 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-utils.R | 8 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-validate.R | 29 readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-vld.R |only readwritesqlite-0.1.0/readwritesqlite/tests/testthat/test-write.R | 451 ++++---- 74 files changed, 2101 insertions(+), 1438 deletions(-)
More information about readwritesqlite at CRAN
Permanent link
Title: Interface to the 'Biodiversity' 'Heritage' Library
Description: Interface to 'Biodiversity' 'Heritage' Library ('BHL')
(<https://www.biodiversitylibrary.org/>) API
(<https://www.biodiversitylibrary.org/docs/api3.html>). 'BHL' is a
repository of 'digitized' literature on 'biodiversity'
studies, including 'floras', research papers, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbhl versions 0.8.0 dated 2017-04-12 and 0.9.0 dated 2020-01-29
rbhl-0.8.0/rbhl/inst/doc/rbhl_vignette.Rmd |only rbhl-0.8.0/rbhl/inst/doc/rbhl_vignette.html |only rbhl-0.8.0/rbhl/inst/vign |only rbhl-0.8.0/rbhl/man/bhl_booksearch.Rd |only rbhl-0.8.0/rbhl/man/bhl_getauthorparts.Rd |only rbhl-0.8.0/rbhl/man/bhl_getauthortitles.Rd |only rbhl-0.8.0/rbhl/man/bhl_getitembyidentifier.Rd |only rbhl-0.8.0/rbhl/man/bhl_getitempages.Rd |only rbhl-0.8.0/rbhl/man/bhl_getitemparts.Rd |only rbhl-0.8.0/rbhl/man/bhl_getpagenames.Rd |only rbhl-0.8.0/rbhl/man/bhl_getpageocrtext.Rd |only rbhl-0.8.0/rbhl/man/bhl_getpartbibtex.Rd |only rbhl-0.8.0/rbhl/man/bhl_getpartbyidentifier.Rd |only rbhl-0.8.0/rbhl/man/bhl_getpartnames.Rd |only rbhl-0.8.0/rbhl/man/bhl_getsubjectparts.Rd |only rbhl-0.8.0/rbhl/man/bhl_getsubjecttitles.Rd |only rbhl-0.8.0/rbhl/man/bhl_gettitlebibTex.Rd |only rbhl-0.8.0/rbhl/man/bhl_gettitlebyidentifier.Rd |only rbhl-0.8.0/rbhl/man/bhl_gettitleitems.Rd |only rbhl-0.8.0/rbhl/man/bhl_getunpublisheditems.Rd |only rbhl-0.8.0/rbhl/man/bhl_getunpublishedparts.Rd |only rbhl-0.8.0/rbhl/man/bhl_getunpublishedtitles.Rd |only rbhl-0.8.0/rbhl/man/bhl_namecount.Rd |only rbhl-0.8.0/rbhl/man/bhl_namegetdetail.Rd |only rbhl-0.8.0/rbhl/man/bhl_namelist.Rd |only rbhl-0.8.0/rbhl/man/bhl_partsearch.Rd |only rbhl-0.8.0/rbhl/man/bhl_titlesearchsimple.Rd |only rbhl-0.8.0/rbhl/man/getpages.Rd |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_booksearch.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getauthorities.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getitembyidentifier.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getitempages.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getpagenames.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getpageocrtext.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getsubjecttitles.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitlebibtex.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitlebyidentifier.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitleitems.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublisheditems.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedparts.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedtitles.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namecount.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namelist.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_partsearch.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_titlesearchsimple.R |only rbhl-0.8.0/rbhl/vignettes/rbhl_vignette.Rmd |only rbhl-0.9.0/rbhl/DESCRIPTION | 31 - rbhl-0.9.0/rbhl/LICENSE | 2 rbhl-0.9.0/rbhl/MD5 | 261 ++++------ rbhl-0.9.0/rbhl/NAMESPACE | 11 rbhl-0.9.0/rbhl/NEWS.md | 13 rbhl-0.9.0/rbhl/R/bhl_authorsearch.R | 15 rbhl-0.9.0/rbhl/R/bhl_booksearch.R | 44 - rbhl-0.9.0/rbhl/R/bhl_getauthormetadata.R |only rbhl-0.9.0/rbhl/R/bhl_getauthorparts.R | 27 - rbhl-0.9.0/rbhl/R/bhl_getauthortitles.R | 25 rbhl-0.9.0/rbhl/R/bhl_getitembyidentifier.R | 31 - rbhl-0.9.0/rbhl/R/bhl_getitemmetadata.R | 7 rbhl-0.9.0/rbhl/R/bhl_getitempages.R | 25 rbhl-0.9.0/rbhl/R/bhl_getitemparts.R | 21 rbhl-0.9.0/rbhl/R/bhl_getpagemetadata.R | 6 rbhl-0.9.0/rbhl/R/bhl_getpagenames.R | 19 rbhl-0.9.0/rbhl/R/bhl_getpageocrtext.R | 16 rbhl-0.9.0/rbhl/R/bhl_getpartbibtex.R | 16 rbhl-0.9.0/rbhl/R/bhl_getpartbyidentifier.R | 26 rbhl-0.9.0/rbhl/R/bhl_getpartmetadata.R | 2 rbhl-0.9.0/rbhl/R/bhl_getpartnames.R | 21 rbhl-0.9.0/rbhl/R/bhl_getsubjectparts.R | 23 rbhl-0.9.0/rbhl/R/bhl_getsubjecttitles.R | 20 rbhl-0.9.0/rbhl/R/bhl_gettitlebibtex.R | 17 rbhl-0.9.0/rbhl/R/bhl_gettitlebyidentifier.R | 24 rbhl-0.9.0/rbhl/R/bhl_gettitleitems.R | 20 rbhl-0.9.0/rbhl/R/bhl_gettitlemetadata.R | 4 rbhl-0.9.0/rbhl/R/bhl_getunpublisheditems.R | 18 rbhl-0.9.0/rbhl/R/bhl_getunpublishedparts.R | 17 rbhl-0.9.0/rbhl/R/bhl_getunpublishedtitles.R | 17 rbhl-0.9.0/rbhl/R/bhl_namecount.R | 27 - rbhl-0.9.0/rbhl/R/bhl_namegetdetail.R | 27 - rbhl-0.9.0/rbhl/R/bhl_namelist.R | 34 - rbhl-0.9.0/rbhl/R/bhl_openurl.R | 2 rbhl-0.9.0/rbhl/R/bhl_pagesearch.R |only rbhl-0.9.0/rbhl/R/bhl_partsearch.R | 42 - rbhl-0.9.0/rbhl/R/bhl_publicationsearch.R |only rbhl-0.9.0/rbhl/R/bhl_subjectmetadata.R |only rbhl-0.9.0/rbhl/R/bhl_titlesearchsimple.R | 23 rbhl-0.9.0/rbhl/R/getpages.R | 23 rbhl-0.9.0/rbhl/R/rbhl-package.R | 56 +- rbhl-0.9.0/rbhl/R/zzz.R | 11 rbhl-0.9.0/rbhl/README.md | 232 ++------ rbhl-0.9.0/rbhl/build/vignette.rds |binary rbhl-0.9.0/rbhl/inst/doc/rbhl.Rmd |only rbhl-0.9.0/rbhl/inst/doc/rbhl.html |only rbhl-0.9.0/rbhl/man/bhl_authorsearch.Rd | 11 rbhl-0.9.0/rbhl/man/bhl_bioherlib.Rd | 11 rbhl-0.9.0/rbhl/man/bhl_booksearch-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getauthormetadata.Rd |only rbhl-0.9.0/rbhl/man/bhl_getauthorparts-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getauthortitles-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getitembyidentifier-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getitemmetadata.Rd | 14 rbhl-0.9.0/rbhl/man/bhl_getitempages-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getitemparts-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getpagemetadata.Rd | 12 rbhl-0.9.0/rbhl/man/bhl_getpagenames-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getpageocrtext-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getpartbibtex-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getpartbyidentifier-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getpartnames-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getsubjectparts-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getsubjecttitles-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_gettitlebibTex-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_gettitlebyidentifier-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_gettitleitems-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_gettitlemetadata.Rd | 5 rbhl-0.9.0/rbhl/man/bhl_getunpublisheditems-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getunpublishedparts-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_getunpublishedtitles-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_namecount-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_namelist-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_namemetadata.Rd |only rbhl-0.9.0/rbhl/man/bhl_openurl.Rd | 16 rbhl-0.9.0/rbhl/man/bhl_pages.Rd |only rbhl-0.9.0/rbhl/man/bhl_pagesearch.Rd |only rbhl-0.9.0/rbhl/man/bhl_partsearch-defunct.Rd |only rbhl-0.9.0/rbhl/man/bhl_publicationsearch.Rd |only rbhl-0.9.0/rbhl/man/bhl_publicationsearchadv.Rd |only rbhl-0.9.0/rbhl/man/bhl_subjectmetadata.Rd |only rbhl-0.9.0/rbhl/man/bhl_titlesearchsimple-defunct.Rd |only rbhl-0.9.0/rbhl/man/rbhl-defunct.Rd | 43 + rbhl-0.9.0/rbhl/man/rbhl-package.Rd | 6 rbhl-0.9.0/rbhl/tests/fixtures |only rbhl-0.9.0/rbhl/tests/testthat/helper-rbhl.R |only rbhl-0.9.0/rbhl/tests/testthat/test-bhl_authorsearch.R | 25 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_bioherlib.R | 23 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_getcollections.R | 16 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_getitemmetadata.R | 18 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_getlanguages.R | 16 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_getpagemetadata.R | 16 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_gettitlemetadata.R | 11 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_namesearch.R | 13 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_openurl.R | 23 rbhl-0.9.0/rbhl/tests/testthat/test-bhl_publicationsearch.R |only rbhl-0.9.0/rbhl/tests/testthat/test-bhl_subjectsearch.R | 13 rbhl-0.9.0/rbhl/tests/testthat/test-getpages.R | 24 rbhl-0.9.0/rbhl/tests/testthat/test-utils.R |only rbhl-0.9.0/rbhl/vignettes/rbhl.Rmd |only 146 files changed, 613 insertions(+), 959 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data
('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages),
Sebastien Lamy de la Chapelle [aut] (fix check type for send/recv long
vectors)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.4-2 dated 2019-12-08 and 0.4-3 dated 2020-01-29
ChangeLog | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/util_execmpi.r | 26 +++++++++++++++++--------- man/uu_execmpi.Rd | 31 ++++++++++++++++++++++++++----- 5 files changed, 55 insertions(+), 23 deletions(-)
Title: Polish Meteorological and Hydrological Data
Description: Download Polish meteorological and hydrological data from the Institute of Meteorology and Water Management - National Research Institute (<https://dane.imgw.pl/>).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between imgw versions 0.2.0 dated 2019-09-12 and 0.3.0 dated 2020-01-29
DESCRIPTION | 8 ++++---- MD5 | 41 +++++++++++++++++++++-------------------- NEWS.md | 4 ++++ R/clean_metadata_hydro.R | 1 + R/clean_metadata_meteo.R | 1 + R/meteo_daily.R | 41 ++++++++++++++++++++++++++++------------- R/meteo_hourly.R | 4 ++-- R/meteo_monthly.R | 4 ++-- R/zzz.R |only README.md | 11 ++++++++--- inst/CITATION | 16 ++++++++++------ inst/doc/getstarted.html | 10 +++++++--- man/hydro.Rd | 11 +++++++++-- man/hydro_annual.Rd | 10 ++++++++-- man/hydro_daily.Rd | 3 +-- man/hydro_monthly.Rd | 3 +-- man/imgw-package.Rd | 6 +++--- man/meteo.Rd | 12 ++++++++++-- man/meteo_daily.Rd | 15 +++++++++++---- man/meteo_hourly.Rd | 11 +++++++++-- man/meteo_monthly.Rd | 11 +++++++++-- man/meteo_sounding.Rd | 2 +- 22 files changed, 150 insertions(+), 75 deletions(-)
Title: Graphical Displays for Subgroup Analysis in Clinical Trials
Description: Provides functions for obtaining a variety of
graphical displays that may be useful in the subgroup analysis setting.
An example with a prostate cancer dataset is provided.
The graphical techniques considered include level plots, mosaic plots,
contour plots, bar charts, Venn diagrams, tree plots, forest plots,
Galbraith plots, L'Abbé plots, the subpopulation treatment effect pattern
plot, alluvial plots, circle plots and UpSet plots.
Author: Nicolas Ballarini [aut, cre],
Yi-Da Chiu [aut],
Jake Conway [ctb],
Nils Gehlenborg [ctb],
Michal Bojanowski [ctb],
Robin Edwards [ctb]
Maintainer: Nicolas Ballarini <nicoballarini@gmail.com>
Diff between SubgrPlots versions 0.1.2 dated 2020-01-13 and 0.1.3 dated 2020-01-29
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/13-a-unidir-aw-ovlp.r | 1 + R/13-a-unidir-aw-ovlp2.r | 8 ++++---- R/26-circular-plot-function.r | 8 ++++++-- inst/doc/package_functions.Rmd | 9 ++++----- inst/doc/package_functions.pdf |binary man/plot_circle.Rd | 4 +++- man/plot_circle2.Rd | 4 +++- man/plot_overlap.Rd | 1 + man/plot_overlap2.Rd | 8 ++++---- vignettes/package_functions.Rmd | 9 ++++----- 12 files changed, 46 insertions(+), 38 deletions(-)
Title: Empirical Transition Matrix
Description: The etm (empirical transition matrix) package permits to estimate the matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space using the Aalen-Johansen estimator. Functions for data preparation and for displaying are also included (Allignol et al., 2011 <doi:10.18637/jss.v038.i04>). Functionals of the Aalen-Johansen estimator, e.g., excess length-of-stay in an intermediate state, can also be computed (Allignol et al. 2011 <doi:10.1007/s00180-010-0200-x>).
Author: Arthur Allignol
Maintainer: ORPHANED
Diff between etm versions 1.0.5 dated 2019-05-28 and 1.0.5.1 dated 2020-01-29
DESCRIPTION | 11 +++++++---- MD5 | 6 +++--- tests/tests.etm.R | 2 +- tests/tests.etm.Rout.save | 28 +++++++++++++--------------- 4 files changed, 24 insertions(+), 23 deletions(-)
Title: Asymptotically Bias-Corrected Regularized Linear Discriminant
Analysis
Description: Offers methods to perform asymptotically bias-corrected regularized linear discriminant analysis (ABC_RLDA) for cost-sensitive binary classification. The bias-correction is an estimate of the bias term added to regularized discriminant analysis (RLDA) that minimizes the overall risk. The default magnitude of misclassification costs are equal and set to 0.5; however, the package also offers the options to set them to some predetermined values or, alternatively, take them as hyperparameters to tune.
A. Zollanvari, M. Abdirash, A. Dadlani and B. Abibullaev (2019) <doi:10.1109/LSP.2019.2918485>.
Author: Dmitriy Fedorov [aut, cre],
Amin Zollanvari [aut],
Aresh Dadlani [aut],
Berdakh Abibullaev [aut]
Maintainer: Dmitriy Fedorov <dmitriy.fedorov@nu.edu.kz>
Diff between abcrlda versions 1.0.1 dated 2019-11-25 and 1.0.2 dated 2020-01-29
abcrlda-1.0.1/abcrlda/inst/abcrlda_1.0.1.pdf |only abcrlda-1.0.2/abcrlda/DESCRIPTION | 8 abcrlda-1.0.2/abcrlda/MD5 | 22 +- abcrlda-1.0.2/abcrlda/NAMESPACE | 2 abcrlda-1.0.2/abcrlda/R/abc_grid.R | 29 ++- abcrlda-1.0.2/abcrlda/R/abcrlda.R | 12 + abcrlda-1.0.2/abcrlda/inst/abcrlda_1.0.2.pdf |only abcrlda-1.0.2/abcrlda/man/abcrlda.Rd | 172 ++++++++++---------- abcrlda-1.0.2/abcrlda/man/cross_validation.Rd | 158 +++++++++--------- abcrlda-1.0.2/abcrlda/man/da_risk_estimator.Rd | 94 ++++++----- abcrlda-1.0.2/abcrlda/man/grid_search.Rd | 208 ++++++++++++------------- abcrlda-1.0.2/abcrlda/man/predict.abcrlda.Rd | 112 ++++++------- abcrlda-1.0.2/abcrlda/man/risk_calculate.Rd | 90 +++++----- 13 files changed, 479 insertions(+), 428 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-21 0.3.5
2018-03-01 0.3.4
2017-10-06 0.3.3
2017-08-22 0.3.1
2017-05-18 0.3
2016-08-25 0.2
2016-04-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-08 1.0.1
2017-07-22 1.0