Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-04 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-08 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-29 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-08 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-15 0.1.4
2019-05-23 0.1.3
2018-07-22 0.1.2
2018-04-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-07 0.1.4
2018-06-14 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-21 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 1.0.1
2020-02-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-10 1.16
2019-03-28 1.15
2018-08-20 1.14
2018-06-11 1.13
2018-02-05 1.12
2018-02-02 1.11
2016-12-07 1.10
2016-08-24 1.9
2016-07-26 1.8
2016-07-19 1.7
2016-06-29 1.6
2016-01-25 1.5
2016-01-08 1.4
2015-12-03 1.3
2015-10-09 1.2
2015-09-16 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-11 1.3.0
2018-12-21 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 0.9.6-2
2020-01-13 0.9.5
Title: Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2019) <doi:10.1007/s11634-019-00373-8>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations from the GPCM family via the EM/CEM algorithm. Visualisation of the results of such models using generalised pairs plots and the inclusion of an additional noise component is also facilitated. A greedy forward stepwise search algorithm is provided for identifying the optimal model in terms of the number of components, the GPCM covariance parameterisation, and the subsets of gating/expert network covariates.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>)
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>
Diff between MoEClust versions 1.2.4 dated 2019-12-11 and 1.3.0 dated 2020-03-30
DESCRIPTION | 20 +- MD5 | 60 +++--- NAMESPACE | 4 R/Functions.R | 418 ++++++++++++++++++++++++++++++++---------------- R/MoEClust.R | 12 - R/Plotting_Functions.R | 67 ++++--- README.md | 2 build/vignette.rds |binary inst/NEWS.md | 33 +++ inst/doc/MoEClust.R | 22 +- inst/doc/MoEClust.Rmd | 28 ++- inst/doc/MoEClust.html | 90 +++++----- man/CO2data.Rd | 6 man/MoEClust-package.Rd | 12 - man/MoE_clust.Rd | 10 - man/MoE_compare.Rd | 6 man/MoE_control.Rd | 11 - man/MoE_crit.Rd | 2 man/MoE_gpairs.Rd | 8 man/MoE_mahala.Rd | 57 +++++- man/MoE_news.Rd | 34 +-- man/MoE_plotCrit.Rd | 6 man/MoE_stepwise.Rd | 10 - man/ais.Rd | 6 man/aitken.Rd | 4 man/as.Mclust.Rd | 41 ++-- man/expert_covar.Rd | 6 man/noise_vol.Rd | 6 man/plot.MoEClust.Rd | 2 man/predict.MoEClust.Rd | 31 ++- vignettes/MoEClust.Rmd | 28 ++- 31 files changed, 665 insertions(+), 377 deletions(-)
Title: Keyboard and Mouse Input Simulation for Windows OS
Description: Control your keyboard and mouse with R code by simulating key presses and mouse clicks. The input simulation is implemented with the Windows API.
Author: Jim Chen [aut, cre],
Jeff Keller [aut, ctb],
Chieh Hsu [ctb]
Maintainer: Jim Chen <jim71183@gmail.com>
Diff between KeyboardSimulator versions 2.1.1 dated 2020-03-22 and 2.2.0 dated 2020-03-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ R/keyboard_value.R | 6 +++++- README.md | 2 +- 5 files changed, 19 insertions(+), 10 deletions(-)
More information about KeyboardSimulator at CRAN
Permanent link
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It provides a data driven strategy for the construction of
insurance tariff classes. This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>.
The package also adds functionality showing additional lines for the reference
categories in the levels of the coefficients in the output of a generalized linear regression analysis.
In addition it implements a procedure determining the level of a factor with the largest exposure,
and thereafter changing the base level of the factor to this level.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.5.1 dated 2020-03-29 and 0.5.2 dated 2020-03-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/univariate_all_plot.R | 9 ++++++--- inst/doc/vignette.pdf |binary 5 files changed, 17 insertions(+), 10 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Simple Tabulation Made Simple
Description: Simple tabulation should be dead simple.
This package is an opinionated approach to easy tabulations while also
providing exact numbers and allowing for re-usability.
This is achieved by providing tabulations as data.frames with columns for
values, optional variable names, frequency counts including and excluding
NAs and percentages for counts including and excluding NAs. Also values are
automatically sorted by in decreasing order of frequency counts to allow for
fast skimming of the most important information.
Author: Peter Meissner [aut, cre]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between tabit versions 0.1.1 dated 2019-10-02 and 0.2.1 dated 2020-03-30
tabit-0.1.1/tabit/R/tab1.R |only tabit-0.1.1/tabit/man/ti_tab1.Rd |only tabit-0.2.1/tabit/DESCRIPTION | 11 ++-- tabit-0.2.1/tabit/MD5 | 19 ++++-- tabit-0.2.1/tabit/NAMESPACE | 15 ++++- tabit-0.2.1/tabit/NEWS.md | 7 ++ tabit-0.2.1/tabit/R/tabit.R |only tabit-0.2.1/tabit/R/tabit_1.R |only tabit-0.2.1/tabit/R/tabit_x.R |only tabit-0.2.1/tabit/README.md | 106 ++++++++++++++++++++++++++++++++------- tabit-0.2.1/tabit/man/tabit.Rd |only tabit-0.2.1/tabit/man/tabit_1.Rd |only tabit-0.2.1/tabit/man/tabit_x.Rd |only tabit-0.2.1/tabit/tests |only 14 files changed, 125 insertions(+), 33 deletions(-)
Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource selection functions and step-selection functions <doi:10.1890/04-0953> and integrated step-selection functions <doi:10.1111/2041-210X.12528>), and simulation of space-use from fitted step-selection functions <doi:10.1002/ecs2.1771>.
Author: Johannes Signer [aut, cre],
Bjoern Reineking [ctb],
Brian Smith [ctb],
Ulrike Schlaegel [ctb],
Scott LaPoint [dtc]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Diff between amt versions 0.0.8 dated 2020-03-23 and 0.0.9 dated 2020-03-30
amt-0.0.8/amt/tests/testthat |only amt-0.0.8/amt/tests/testthat.R |only amt-0.0.9/amt/DESCRIPTION | 12 ++--- amt-0.0.9/amt/MD5 | 57 ++++++++++++------------- amt-0.0.9/amt/NEWS.md | 14 +++++- amt-0.0.9/amt/R/coercion.R | 8 +-- amt-0.0.9/amt/R/crs.R | 4 - amt-0.0.9/amt/R/distributions.R | 8 +++ amt-0.0.9/amt/R/extract_covariates.R | 8 +-- amt-0.0.9/amt/R/hr_mcp.R | 1 amt-0.0.9/amt/R/od.R | 17 ++++++- amt-0.0.9/amt/R/track.R | 2 amt-0.0.9/amt/R/track_methods.R | 2 amt-0.0.9/amt/build/partial.rdb |binary amt-0.0.9/amt/inst/doc/faq.html | 6 +- amt-0.0.9/amt/inst/doc/p1_getting_started.html | 22 ++++----- amt-0.0.9/amt/inst/doc/p3_rsf.html | 18 +++---- amt-0.0.9/amt/inst/doc/p4_SSF.html | 18 +++---- amt-0.0.9/amt/inst/doc/p5_other_packages.html | 26 +++++------ amt-0.0.9/amt/inst/tinytest |only amt-0.0.9/amt/man/amt-package.Rd | 2 amt-0.0.9/amt/man/helper.Rd | 2 amt-0.0.9/amt/man/log_rss.Rd | 3 - amt-0.0.9/amt/man/od.Rd | 20 +++++++- amt-0.0.9/amt/tests/tinytest.R |only 25 files changed, 146 insertions(+), 104 deletions(-)
Title: Staged Event Trees
Description: Creates and fits staged event tree probability models.
Staged event trees are probabilistic graphical models capable of
representing asymmetric conditional independence statements
among categorical variables.
This package contains functions to create, plot and fit
staged event trees from data, moreover different structure learning
algorithms are available.
References:
Collazo R. A., Görgen C. and Smith J. Q.
(2018, ISBN:9781498729604).
Görgen C., Bigatti A., Riccomagno E. and Smith J. Q. (2018)
<arXiv:1705.09457>.
Thwaites P. A., Smith, J. Q. (2017) <arXiv:1510.00186>.
Barclay L. M., Hutton J. L. and Smith J. Q. (2013)
<doi:10.1016/j.ijar.2013.05.006>.
Smith J. Q. and Anderson P. E. (2008)
<doi:10.1016/j.artint.2007.05.004>.
Author: Gherardo Varando [aut, cre] (<https://orcid.org/0000-0002-6708-1103>),
Federico Carli [aut],
Manuele Leonelli [aut] (<https://orcid.org/0000-0002-2562-5192>),
Eva Riccomagno [aut]
Maintainer: Gherardo Varando <gherardo.varando@gmail.com>
Diff between stagedtrees versions 1.0.1 dated 2020-01-12 and 1.0.2 dated 2020-03-30
DESCRIPTION | 8 MD5 | 92 ++--- NAMESPACE | 4 NEWS.md | 10 R/0-util-functions.R | 193 ++++++------ R/1-base-model-function.R | 35 +- R/1b-base-model-function.R | 534 +++++++++++++++++++--------------- R/2-plot-functions.R | 156 +++++++-- R/3-inference-functions.R | 60 ++- R/4-model-selection.R | 160 +++++----- R/5-classifier-model-functions.R | 38 +- R/6-sampling-functions.R | 16 - R/7-ceg-functions.R | 54 +-- R/data-doc.R | 32 +- R/stagedtrees.R | 35 +- man/PhDArticles.Rd | 6 man/Pokemon.Rd | 6 man/barplot_stages.Rd |only man/bhc.sevt.Rd | 2 man/bhcr.sevt.Rd | 2 man/compare.sevt.Rd | 6 man/fbhc.sevt.Rd | 2 man/getstagepath.Rd | 3 man/hc.sevt.Rd | 9 man/join_zero_counts.Rd | 5 man/logLik.strt_ev_tree.Rd | 7 man/naive.sevt.Rd | 6 man/path_probability.sevt.Rd | 8 man/plot.sevt.Rd | 8 man/predict.sevt.Rd | 6 man/prob.sevt.Rd | 4 man/rename_stage.Rd |only man/sevt.fit.Rd | 12 man/staged_ev_tree.Rd | 8 man/stagedtrees.Rd | 1 man/varnames.sevt.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_compare.R | 20 - tests/testthat/test_conversions.R | 47 +- tests/testthat/test_explore.R | 29 + tests/testthat/test_inference.R | 49 +-- tests/testthat/test_info_functions.R | 15 tests/testthat/test_model_selection.R | 30 - tests/testthat/test_plot.R | 28 + tests/testthat/test_sampling.R | 10 tests/testthat/test_staged_ev_tree.R | 63 ++-- tests/testthat/test_strt_ev_tree-R.R | 40 -- tests/testthat/test_util_functions.R | 159 ++++++---- 48 files changed, 1163 insertions(+), 857 deletions(-)
Title: Count Transformation Models
Description: Count transformation models featuring
parameters interpretable as discrete hazard ratios, odds ratios,
reverse-time discrete hazard ratios, or transformed expectations.
An appropriate data transformation for a count outcome and
regression coefficients are simultaneously estimated by maximising
the exact discrete log-likelihood using the computational framework
provided in package 'mlt', technical details are given in
Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>.
Author: Sandra Siegfried [aut],
Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between cotram versions 0.1-1 dated 2019-10-02 and 0.2-0 dated 2020-03-30
cotram-0.1-1/cotram/inst/README.txt |only cotram-0.1-1/cotram/vignettes/count_transformation.pdf |only cotram-0.2-0/cotram/DESCRIPTION | 12 cotram-0.2-0/cotram/MD5 | 47 +-- cotram-0.2-0/cotram/NAMESPACE | 5 cotram-0.2-0/cotram/R/confband.R |only cotram-0.2-0/cotram/R/methods.R | 8 cotram-0.2-0/cotram/R/models.R | 2 cotram-0.2-0/cotram/R/plot.R | 68 ++++- cotram-0.2-0/cotram/R/predict.R | 85 ++++-- cotram-0.2-0/cotram/build/partial.rdb |binary cotram-0.2-0/cotram/build/vignette.rds |binary cotram-0.2-0/cotram/inst/CITATION |only cotram-0.2-0/cotram/inst/NEWS.Rd | 8 cotram-0.2-0/cotram/inst/README |only cotram-0.2-0/cotram/inst/application/ex_DVC.R | 201 +++++++++++++--- cotram-0.2-0/cotram/inst/doc/cotram.R | 20 + cotram-0.2-0/cotram/inst/doc/cotram.Rnw | 40 ++- cotram-0.2-0/cotram/inst/doc/cotram.pdf |binary cotram-0.2-0/cotram/inst/simulation/countDGP.R | 149 +++++++++-- cotram-0.2-0/cotram/man/confband.Rd |only cotram-0.2-0/cotram/man/cotram-methods.Rd | 49 +-- cotram-0.2-0/cotram/man/cotram.Rd | 10 cotram-0.2-0/cotram/tests/confband-Ex.R |only cotram-0.2-0/cotram/tests/models-Ex.R | 4 cotram-0.2-0/cotram/tests/predict-Ex.R | 213 ++++++++++------- cotram-0.2-0/cotram/vignettes/cotram.Rnw | 40 ++- cotram-0.2-0/cotram/vignettes/count_mlt.bib | 76 +++++- 28 files changed, 744 insertions(+), 293 deletions(-)
Title: Wrapper Functions for 'Freesurfer'
Description: Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and
commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with
'Freesurfer' completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes an 'Freesurfer'
command and returns an R object of class 'nifti' or necessary output.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>),
Athanasia Mo Mowinckel [ctb] (<https://orcid.org/0000-0002-5756-0223>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between freesurfer versions 1.6.5 dated 2019-07-18 and 1.6.7 dated 2020-03-30
DESCRIPTION | 23 ++- MD5 | 45 +++-- NAMESPACE | 1 NEWS.md | 9 + R/fs_setup.R | 109 +++++++++++--- R/read_annotation.R |only README.md |only build/vignette.rds |binary inst/doc/exploring_included_data.R | 84 ++++++----- inst/doc/exploring_included_data.Rmd | 32 +++- inst/doc/exploring_included_data.html | 259 +++++++++++++++++----------------- man/aparcstats2table.Rd | 18 +- man/asegstats2table.Rd | 15 + man/construct_subj_dir.Rd | 12 + man/freesurferdir.Rd | 2 man/fs_cmd.Rd | 20 ++ man/fs_lut.Rd | 4 man/mri_surf2surf.Rd | 16 +- man/mris_convert.Rd | 3 man/read_annotation.Rd |only man/read_fs_table.Rd | 3 man/recon.Rd | 50 +++++- man/recon_all.Rd | 10 + man/reconner.Rd | 10 + vignettes/exploring_included_data.Rmd | 32 +++- 25 files changed, 496 insertions(+), 261 deletions(-)
Title: Transforming and Harmonizing CCHS Variables
Description: Supporting the use of the Canadian Community Health Survey
(CCHS) by transforming variables from each cycle into harmonized,
consistent versions that span survey cycles (currently, 2001 to
2014). CCHS data used in this library is accessed and adapted in
accordance to the Statistics Canada Open Licence Agreement. This
package uses rec_with_table(), which was developed from 'sjmisc'
rec(). Lüdecke D (2018). "sjmisc: Data and Variable Transformation
Functions". Journal of Open Source Software, 3(26), 754.
<doi:10.21105/joss.00754>.
Author: Doug Manuel [aut, cph] (<https://orcid.org/0000-0003-0912-0845>),
Warsame Yusuf [aut, cre],
Rostyslav Vyuha [aut],
Carol Bennett [aut],
Yulric Sequeira [ctb],
The Ottawa Hospital [cph]
Maintainer: Warsame Yusuf <waryusuf@ohri.ca>
Diff between cchsflow versions 1.5.1 dated 2020-03-20 and 1.6.0 dated 2020-03-30
DESCRIPTION | 10 +- MD5 | 44 +++++----- NEWS.md | 29 ++++++- R/RACDPAL.R | 2 R/adl.R | 4 R/alcohol.R | 60 ++++++++------ R/bmi.R | 2 R/percent-time-canada.R | 8 + R/respiratory-condition.R | 75 +++++++++--------- R/smoking.R | 6 - data/variable_details.RData |binary data/variables.RData |binary inst/extdata/variable_details.csv | 105 +++++++++++++++++--------- inst/extdata/variables.csv | 62 ++++++++------- man/binge_drinker_fun.Rd | 17 ++-- tests/testdata/rec_with_table_test_data.RData |binary tests/testthat/test-RACDPAL.R | 8 - tests/testthat/test-adl.R | 10 +- tests/testthat/test-binge-drinker.R | 22 +++-- tests/testthat/test-bmi.R | 6 - tests/testthat/test-percent-time-canada.R | 14 +-- tests/testthat/test-respiratory-condition.R | 10 +- tests/testthat/test-smoking.R | 4 23 files changed, 293 insertions(+), 205 deletions(-)
More information about text.alignment at CRAN
Permanent link
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Claus Thorn Ekstrøm [ctb],
Edouard Bonneville [ctb]
Maintainer: Jonathan Bartlett <j.w.bartlett@bath.ac.uk>
Diff between smcfcs versions 1.4.0 dated 2019-03-30 and 1.4.1 dated 2020-03-30
DESCRIPTION | 14 MD5 | 12 R/smcfcs.r | 18 - build/vignette.rds |binary inst/doc/smcfcs-vignette.html | 392 ++++++++++++++++++++------ inst/doc/smcfcs_coverror-vignette.html | 482 +++++++++++++++++++++++---------- tests/testthat/test_coxph.r | 2 7 files changed, 672 insertions(+), 248 deletions(-)
Title: Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Description: Fits univariate Bayesian spatial regression models for large datasets using Nearest Neighbor Gaussian Processes (NNGP) detailed in Finley, Datta, Banerjee (2020) <arXiv:2001.09111>, and Finley, Datta, Cook, Morton, Andersen, and Banerjee (2019) <doi:10.1080/10618600.2018.1537924> and Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091>.
Author: Andrew Finley [aut, cre],
Abhirup Datta [aut],
Sudipto Banerjee [aut]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spNNGP versions 0.1.3 dated 2020-01-30 and 0.1.4 dated 2020-03-30
spNNGP-0.1.3/spNNGP/R/spPredict.R |only spNNGP-0.1.3/spNNGP/man/spPredict.Rd |only spNNGP-0.1.4/spNNGP/DESCRIPTION | 8 - spNNGP-0.1.4/spNNGP/MD5 | 19 +- spNNGP-0.1.4/spNNGP/NAMESPACE | 4 spNNGP-0.1.4/spNNGP/R/generics.R | 214 ++++++++++++++++++++++++++++---- spNNGP-0.1.4/spNNGP/R/spConjNNGP.R | 6 spNNGP-0.1.4/spNNGP/R/spNNGP.R | 4 spNNGP-0.1.4/spNNGP/R/util.R | 16 +- spNNGP-0.1.4/spNNGP/man/predict.NNGP.Rd |only spNNGP-0.1.4/spNNGP/man/summary.NNGP.Rd | 10 - spNNGP-0.1.4/spNNGP/src/cSLGP.cpp | 2 12 files changed, 227 insertions(+), 56 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.3.2 dated 2020-02-27 and 1.3.3 dated 2020-03-30
sen2r-1.3.2/sen2r/R/geograbber_process.R |only sen2r-1.3.2/sen2r/man/geograbber_process.Rd |only sen2r-1.3.3/sen2r/DESCRIPTION | 8 sen2r-1.3.3/sen2r/MD5 | 99 +- sen2r-1.3.3/sen2r/NAMESPACE | 2 sen2r-1.3.3/sen2r/NEWS.md | 20 sen2r-1.3.3/sen2r/R/check_param_list.R | 1 sen2r-1.3.3/sen2r/R/check_sen2r_deps.R | 2 sen2r-1.3.3/sen2r/R/compute_s2_paths.R | 31 sen2r-1.3.3/sen2r/R/expand_path.R | 2 sen2r-1.3.3/sen2r/R/gdal_warp.R | 2 sen2r-1.3.3/sen2r/R/gdalwarp_grid.R | 2 sen2r-1.3.3/sen2r/R/gipp.R | 4 sen2r-1.3.3/sen2r/R/ignorelist.R |only sen2r-1.3.3/sen2r/R/list_sen2r_paths.R | 118 +-- sen2r-1.3.3/sen2r/R/load_binpaths.R | 6 sen2r-1.3.3/sen2r/R/print_message.R | 4 sen2r-1.3.3/sen2r/R/raster_metadata.R | 13 sen2r-1.3.3/sen2r/R/s2_gui.R | 2 sen2r-1.3.3/sen2r/R/s2_mask.R | 8 sen2r-1.3.3/sen2r/R/sen2cor.R | 6 sen2r-1.3.3/sen2r/R/sen2r.R | 176 +--- sen2r-1.3.3/sen2r/R/sen2r_process_report.R | 81 -- sen2r-1.3.3/sen2r/R/st_as_text_2.R | 4 sen2r-1.3.3/sen2r/R/st_crs2.R | 34 sen2r-1.3.3/sen2r/build/vignette.rds |binary sen2r-1.3.3/sen2r/inst/CITATION | 20 sen2r-1.3.3/sen2r/inst/WORDLIST | 7 sen2r-1.3.3/sen2r/inst/doc/installation.R | 10 sen2r-1.3.3/sen2r/inst/doc/installation.Rmd | 18 sen2r-1.3.3/sen2r/inst/doc/installation.html | 18 sen2r-1.3.3/sen2r/man/compute_s2_paths.Rd | 122 +-- sen2r-1.3.3/sen2r/man/expand_path.Rd | 2 sen2r-1.3.3/sen2r/man/gdal_warp.Rd | 2 sen2r-1.3.3/sen2r/man/gdalwarp_grid.Rd | 2 sen2r-1.3.3/sen2r/man/ignorelist.Rd |only sen2r-1.3.3/sen2r/man/print_message.Rd | 4 sen2r-1.3.3/sen2r/man/raster_metadata.Rd | 1 sen2r-1.3.3/sen2r/man/s2_mask.Rd | 8 sen2r-1.3.3/sen2r/man/sen2r.Rd | 26 sen2r-1.3.3/sen2r/man/sen2r_process_report.Rd | 13 sen2r-1.3.3/sen2r/man/st_as_text_2.Rd | 4 sen2r-1.3.3/sen2r/man/st_crs2.Rd | 2 sen2r-1.3.3/sen2r/tests/testthat/test-t05_load_binpaths.R | 4 sen2r-1.3.3/sen2r/tests/testthat/test-t12_s2_download.R | 6 sen2r-1.3.3/sen2r/tests/testthat/test-t13_install_sen2cor.R | 284 ++++---- sen2r-1.3.3/sen2r/tests/testthat/test-t14_sen2cor.R | 424 ++++++------ sen2r-1.3.3/sen2r/tests/testthat/test-t20_s2_merge.R | 2 sen2r-1.3.3/sen2r/tests/testthat/test-t21_s2_warp.R | 65 + sen2r-1.3.3/sen2r/tests/testthat/test-t25_ignorelist.R |only sen2r-1.3.3/sen2r/tests/testthat/test-t31_abs2rel.R | 2 sen2r-1.3.3/sen2r/tests/testthat/test-t34_st_crs2.R | 71 +- sen2r-1.3.3/sen2r/vignettes/installation.Rmd | 18 53 files changed, 937 insertions(+), 823 deletions(-)
Title: Sensitivity Analysis for Publication Bias in Meta-Analyses
Description: Performs sensitivity analysis for publication bias in meta-analyses (per Mathur & VanderWeele, 2020 [<https://osf.io/s9dp6>]).
These analyses enable statements such as: "For publication bias to shift the observed point estimate to the null,
'significant' results would need to be at least 30-fold more likely to be published than negative or 'nonsignificant'
results." Comparable statements can be made regarding shifting to a chosen non-null value or shifting the confidence
interval. Provides a worst-case meta-analytic point estimate under maximal publication bias obtained simply by conducting
a standard meta-analysis of only the negative and "nonsignificant" studies.
Author: Maya B. Mathur, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between PublicationBias versions 1.1.0 dated 2019-10-26 and 2.0.0 dated 2020-03-30
DESCRIPTION | 8 MD5 | 14 R/functions.R | 637 ++++++++++++++++++++++++++------------------- man/corrected_meta.Rd | 161 ++++++----- man/pval_plot.Rd | 20 - man/significance_funnel.Rd | 85 ++++-- man/svalue.Rd | 110 ++++--- tests/testthat/testthat.R | 69 ---- 8 files changed, 619 insertions(+), 485 deletions(-)
More information about PublicationBias at CRAN
Permanent link
Title: A Parallelized General-Purpose Optimization Based on
Marquardt-Levenberg Algorithm
Description: This algorithm provides a numerical solution to the
problem of minimizing (or maximizing) a function. It is particularly suited for complex problems and more efficient than
the Gauss-Newton-like algorithm when starting from points very
far from the final minimum (or maximum). Each iteration is parallelized and convergence relies on a stringent stopping criterion based on the first and second derivatives.
Author: Viviane Philipps, Cecile Proust-Lima, Melanie Prague, Boris Hejblum, Daniel Commenges, Amadou Diakite
Maintainer: Viviane Philipps <viviane.philipps@u-bordeaux.fr>
Diff between marqLevAlg versions 2.0.1 dated 2019-09-20 and 2.0.2 dated 2020-03-30
marqLevAlg-2.0.1/marqLevAlg/data/dataEmilie.rda |only marqLevAlg-2.0.1/marqLevAlg/data/weib.rda |only marqLevAlg-2.0.1/marqLevAlg/man/dataEmilie.Rd |only marqLevAlg-2.0.1/marqLevAlg/man/weib.Rd |only marqLevAlg-2.0.2/marqLevAlg/DESCRIPTION | 23 marqLevAlg-2.0.2/marqLevAlg/MD5 | 30 marqLevAlg-2.0.2/marqLevAlg/NAMESPACE | 2 marqLevAlg-2.0.2/marqLevAlg/R/dataEx.R |only marqLevAlg-2.0.2/marqLevAlg/R/exemple.R |only marqLevAlg-2.0.2/marqLevAlg/R/marqLevAlg-package.R | 2 marqLevAlg-2.0.2/marqLevAlg/R/marqLevAlg.R | 1012 +++++++++--------- marqLevAlg-2.0.2/marqLevAlg/R/print.marqLevAlg.R | 97 - marqLevAlg-2.0.2/marqLevAlg/R/searpas.R | 4 marqLevAlg-2.0.2/marqLevAlg/R/summary.marqLevAlg.R | 79 - marqLevAlg-2.0.2/marqLevAlg/build/partial.rdb |binary marqLevAlg-2.0.2/marqLevAlg/data/dataEx.rda |only marqLevAlg-2.0.2/marqLevAlg/man/dataEx.Rd |only marqLevAlg-2.0.2/marqLevAlg/man/gradLMM.Rd |only marqLevAlg-2.0.2/marqLevAlg/man/loglikLMM.Rd |only marqLevAlg-2.0.2/marqLevAlg/man/marqLevAlg-package.Rd | 2 marqLevAlg-2.0.2/marqLevAlg/man/marqLevAlg.Rd | 31 21 files changed, 670 insertions(+), 612 deletions(-)
Title: Thematic Map Tools
Description: Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmaptools versions 2.0-2 dated 2019-07-18 and 3.0 dated 2020-03-30
tmaptools-2.0-2/tmaptools/R/aggregate_map.R |only tmaptools-2.0-2/tmaptools/R/append_data.R |only tmaptools-2.0-2/tmaptools/R/get_IDs.R |only tmaptools-2.0-2/tmaptools/R/get_proj4_code.R |only tmaptools-2.0-2/tmaptools/R/is_projected.R |only tmaptools-2.0-2/tmaptools/R/kde2D.R |only tmaptools-2.0-2/tmaptools/R/line_functions.R |only tmaptools-2.0-2/tmaptools/R/projection_units.R |only tmaptools-2.0-2/tmaptools/R/raster_functions.R |only tmaptools-2.0-2/tmaptools/R/read_shape.R |only tmaptools-2.0-2/tmaptools/R/sample_dots.R |only tmaptools-2.0-2/tmaptools/R/sbind.R |only tmaptools-2.0-2/tmaptools/R/smooth_map.R |only tmaptools-2.0-2/tmaptools/R/smooth_raster_cover.R |only tmaptools-2.0-2/tmaptools/R/to_raster.R |only tmaptools-2.0-2/tmaptools/R/xxx_raster.R |only tmaptools-2.0-2/tmaptools/man/aggregate_map.Rd |only tmaptools-2.0-2/tmaptools/man/append_data.Rd |only tmaptools-2.0-2/tmaptools/man/double_line.Rd |only tmaptools-2.0-2/tmaptools/man/get_IDs.Rd |only tmaptools-2.0-2/tmaptools/man/get_proj4.Rd |only tmaptools-2.0-2/tmaptools/man/is_projected.Rd |only tmaptools-2.0-2/tmaptools/man/points_to_raster.Rd |only tmaptools-2.0-2/tmaptools/man/poly_to_raster.Rd |only tmaptools-2.0-2/tmaptools/man/read_shape.Rd |only tmaptools-2.0-2/tmaptools/man/sample_dots.Rd |only tmaptools-2.0-2/tmaptools/man/sbind.Rd |only tmaptools-2.0-2/tmaptools/man/set_projection.Rd |only tmaptools-2.0-2/tmaptools/man/smooth_map.Rd |only tmaptools-2.0-2/tmaptools/man/smooth_raster_cover.Rd |only tmaptools-2.0-2/tmaptools/man/tmaptools-deprecated.Rd |only tmaptools-2.0-2/tmaptools/man/write_shape.Rd |only tmaptools-3.0/tmaptools/DESCRIPTION | 16 - tmaptools-3.0/tmaptools/MD5 | 113 ++++------- tmaptools-3.0/tmaptools/NAMESPACE | 65 ------ tmaptools-3.0/tmaptools/NEWS | 5 tmaptools-3.0/tmaptools/R/approx_areas.R | 63 ------ tmaptools-3.0/tmaptools/R/approx_distances.R | 159 +--------------- tmaptools-3.0/tmaptools/R/bb.R | 122 ++++++++---- tmaptools-3.0/tmaptools/R/bb_poly.R | 17 - tmaptools-3.0/tmaptools/R/calc_densities.R | 4 tmaptools-3.0/tmaptools/R/crop_shape.R | 86 ++++----- tmaptools-3.0/tmaptools/R/deprecated.R | 149 ++++++++++++++- tmaptools-3.0/tmaptools/R/geocode_OSM.R | 76 ++++---- tmaptools-3.0/tmaptools/R/get_asp_ratio.R | 9 tmaptools-3.0/tmaptools/R/get_brewer_pal.R | 12 - tmaptools-3.0/tmaptools/R/map_coloring.R | 7 tmaptools-3.0/tmaptools/R/onLoad.R | 12 - tmaptools-3.0/tmaptools/R/palette_explorer.R | 4 tmaptools-3.0/tmaptools/R/pkg.R | 32 --- tmaptools-3.0/tmaptools/R/read_GPX.R | 38 +--- tmaptools-3.0/tmaptools/R/read_osm.R | 11 - tmaptools-3.0/tmaptools/R/set_projection.R | 171 ------------------ tmaptools-3.0/tmaptools/R/sf_stars_functions.R |only tmaptools-3.0/tmaptools/R/simplify_shape.R | 29 +-- tmaptools-3.0/tmaptools/R/xxx_scales.R | 63 +++--- tmaptools-3.0/tmaptools/man/approx_areas.Rd | 2 tmaptools-3.0/tmaptools/man/approx_distances.Rd | 4 tmaptools-3.0/tmaptools/man/bb.Rd | 24 +- tmaptools-3.0/tmaptools/man/bb_poly.Rd | 13 - tmaptools-3.0/tmaptools/man/calc_densities.Rd | 16 + tmaptools-3.0/tmaptools/man/crop_shape.Rd | 4 tmaptools-3.0/tmaptools/man/deprecated_functions.Rd | 58 ++++-- tmaptools-3.0/tmaptools/man/geocode_OSM.Rd | 24 +- tmaptools-3.0/tmaptools/man/get_asp_ratio.Rd | 3 tmaptools-3.0/tmaptools/man/get_brewer_pal.Rd | 3 tmaptools-3.0/tmaptools/man/map_coloring.Rd | 12 - tmaptools-3.0/tmaptools/man/palette_explorer.Rd | 4 tmaptools-3.0/tmaptools/man/pipe.Rd | 16 - tmaptools-3.0/tmaptools/man/read_GPX.Rd | 46 +--- tmaptools-3.0/tmaptools/man/read_osm.Rd | 12 + tmaptools-3.0/tmaptools/man/rev_geocode_OSM.Rd | 14 + tmaptools-3.0/tmaptools/man/simplify_shape.Rd | 6 tmaptools-3.0/tmaptools/man/tmaptools-package.Rd | 22 -- 74 files changed, 618 insertions(+), 928 deletions(-)
Title: Linking R with the Open-Source 'SAGA-GIS' Software
Description: Provides an R scripting interface to the open-source 'SAGA-GIS' (System for Automated Geoscientific Analyses Geographical Information System) software. 'Rsagacmd' dynamically generates R functions for every 'SAGA-GIS' geoprocessing tool based on the user's currently installed 'SAGA-GIS' version. These functions are contained within an S3 object and are accessed as a named list of libraries and tools. This structure facilitates an easier scripting experience by organizing the large number of 'SAGA-GIS' geoprocessing tools (>700) by their respective library. Interactive scripting can fully take advantage of code autocompletion tools (e.g. in 'Rstudio'), allowing for each tools syntax to be quickly recognized. Furthermore, the most common types of spatial data (via the 'raster', 'sp', and 'sf' packages) along with non-spatial data are automatically passed from R to the 'SAGA-GIS' command line tool for geoprocessing operations, and the results are loaded as the appropriate R object. Outputs from individual 'SAGA-GIS' tools can also be chained using pipes from the 'magrittr' and 'dplyr' packages to combine complex geoprocessing operations together in a single statement. 'SAGA-GIS' is available under a GPLv2 / LGPLv2 licence from <https://sourceforge.net/projects/saga-gis/> including Windows x86/x84 binaries. SAGA-GIS is also included in Debian/Ubuntu default software repositories and is available for macOS using homebrew (<https://brew.sh/>) from the osgeo/osgeo4mac (<https://github.com/OSGeo/homebrew-osgeo4mac>) formula tap. Rsagacmd has currently been tested on 'SAGA-GIS' versions from 2.3.1 to 7.6.0 on Windows, Linux and macOS.
Author: Steven Pawley [aut, cre]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between Rsagacmd versions 0.0.2 dated 2019-11-07 and 0.0.5 dated 2020-03-30
Rsagacmd-0.0.2/Rsagacmd/R/translate.R |only Rsagacmd-0.0.2/Rsagacmd/man/create_tool.Rd |only Rsagacmd-0.0.5/Rsagacmd/DESCRIPTION | 16 - Rsagacmd-0.0.5/Rsagacmd/MD5 | 57 ++- Rsagacmd-0.0.5/Rsagacmd/NAMESPACE | 10 Rsagacmd-0.0.5/Rsagacmd/R/Rsagacmd.R | 2 Rsagacmd-0.0.5/Rsagacmd/R/create_function.R | 17 + Rsagacmd-0.0.5/Rsagacmd/R/create_tool.R | 50 +-- Rsagacmd-0.0.5/Rsagacmd/R/read_output.R |only Rsagacmd-0.0.5/Rsagacmd/R/saga.R | 150 +++++----- Rsagacmd-0.0.5/Rsagacmd/R/saga_execute.R | 148 +++------ Rsagacmd-0.0.5/Rsagacmd/R/saga_search.R | 13 Rsagacmd-0.0.5/Rsagacmd/R/saga_version.R | 4 Rsagacmd-0.0.5/Rsagacmd/R/save_object.R |only Rsagacmd-0.0.5/Rsagacmd/R/tempfiles.R | 6 Rsagacmd-0.0.5/Rsagacmd/R/utils.R | 39 +- Rsagacmd-0.0.5/Rsagacmd/README.md | 141 ++++++--- Rsagacmd-0.0.5/Rsagacmd/man/Rsagacmd.Rd | 3 Rsagacmd-0.0.5/Rsagacmd/man/print.saga_tool.Rd | 2 Rsagacmd-0.0.5/Rsagacmd/man/saga_configure.Rd | 38 +- Rsagacmd-0.0.5/Rsagacmd/man/saga_env.Rd | 13 Rsagacmd-0.0.5/Rsagacmd/man/saga_execute.Rd | 25 - Rsagacmd-0.0.5/Rsagacmd/man/saga_gis.Rd | 56 ++- Rsagacmd-0.0.5/Rsagacmd/man/saga_remove_tmpfiles.Rd | 6 Rsagacmd-0.0.5/Rsagacmd/man/saga_search.Rd | 4 Rsagacmd-0.0.5/Rsagacmd/man/saga_version.Rd | 4 Rsagacmd-0.0.5/Rsagacmd/man/save_object.Rd |only Rsagacmd-0.0.5/Rsagacmd/man/tile_geoprocessor.Rd | 16 - Rsagacmd-0.0.5/Rsagacmd/tests/testthat/test-mrvbf_threshold.R |only Rsagacmd-0.0.5/Rsagacmd/tests/testthat/test-saga_environment.R | 1 Rsagacmd-0.0.5/Rsagacmd/tests/testthat/test-sagatools.R | 25 - Rsagacmd-0.0.5/Rsagacmd/tests/testthat/test-supported-saga-versions.R | 1 Rsagacmd-0.0.5/Rsagacmd/tests/testthat/test-tile-geoprocessor.R |only 33 files changed, 451 insertions(+), 396 deletions(-)
Title: Infinite Mixtures of Infinite Factor Analysers and Related
Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2019) <doi:10.1214/19-BA1179>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results, conducting posterior inference on parameters of interest, posterior predictive checking, and quantifying uncertainty.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Cinzia Viroli [ctb],
Isobel Claire Gormley [ctb]
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>
Diff between IMIFA versions 2.1.1 dated 2019-12-11 and 2.1.2 dated 2020-03-30
DESCRIPTION | 18 ++-- MD5 | 84 +++++++++--------- NAMESPACE | 6 - R/Diagnostics.R | 45 +++++----- R/FullConditionals.R | 210 ++++++++++++++++++++++++++++++----------------- R/Gibbs_FA.R | 20 ++-- R/Gibbs_IFA.R | 2 R/Gibbs_IMFA.R | 27 +++++- R/Gibbs_IMIFA.R | 135 ++++++++++++++++++++---------- R/Gibbs_MFA.R | 14 +-- R/Gibbs_MIFA.R | 51 +++++------ R/Gibbs_OMFA.R | 2 R/Gibbs_OMIFA.R | 38 ++++---- R/IMIFA.R | 4 R/MainFunction.R | 31 ++++-- R/PlottingFunctions.R | 28 +++--- R/SimulateData.R | 8 - R/data.R | 2 build/vignette.rds |binary inst/NEWS.md | 17 +++ inst/doc/IMIFA.R | 2 inst/doc/IMIFA.Rmd | 6 - inst/doc/IMIFA.html | 44 ++++----- man/G_moments.Rd | 22 +++- man/IMIFA-package.Rd | 4 man/IMIFA_news.Rd | 34 +++---- man/Ledermann.Rd | 5 - man/PGMM_dfree.Rd | 4 man/USPSdigits.Rd | 6 - man/Zsimilarity.Rd | 2 man/bnpControl.Rd | 10 +- man/coffee.Rd | 4 man/get_IMIFA_results.Rd | 4 man/gumbel_max.Rd | 4 man/is.posi_def.Rd | 4 man/mcmc_IMIFA.Rd | 6 - man/mgpControl.Rd | 2 man/olive.Rd | 6 + man/pareto_scale.Rd | 2 man/shift_GA.Rd | 2 man/show_IMIFA_digit.Rd | 6 - man/storeControl.Rd | 2 vignettes/IMIFA.Rmd | 6 - 43 files changed, 560 insertions(+), 369 deletions(-)
Title: Implement Download Buttons in 'rmarkdown'
Description: Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Author: Felipe Mattioni Maturana [aut, cre]
(<https://orcid.org/0000-0002-4221-6104>)
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between downloadthis versions 0.1.1 dated 2020-03-05 and 0.1.2 dated 2020-03-30
DESCRIPTION | 8 +- MD5 | 26 +++++---- NEWS.md | 10 +++ R/download.R | 12 ++-- README.md | 4 + build/vignette.rds |binary inst/doc/button_types.R |only inst/doc/button_types.Rmd |only inst/doc/button_types.html |only inst/doc/customization.html | 6 +- inst/doc/downloadthis.R | 66 ----------------------- inst/doc/downloadthis.Rmd | 104 +++++------------------------------- inst/doc/downloadthis.html | 124 ++++++++------------------------------------ man/download_this.Rd | 6 +- vignettes/button_types.Rmd |only vignettes/downloadthis.Rmd | 104 +++++------------------------------- 16 files changed, 97 insertions(+), 373 deletions(-)
Title: Spherical Principal Curves
Description: Fitting a principal curve to data lying in the spherical surface.
This package provides principal circle, principal geodesic analysis, Hauberg's
principal curves, and spherical principal curves. Moreover, it offers locally
defined principal geodesics which are currently under study. The detailed procedures
are described in Jang-Hyun Kim, Jongmin Lee and Hee-Seok Oh (2020) <arXiv:2003.02578>.
Author: Jongmin Lee [aut, cre],
Jang-Hyun Kim [ctb],
Hee-Seok Oh [aut]
Maintainer: Jongmin Lee <jongminlee9218@gmail.com>
Diff between spherepc versions 0.1.3 dated 2020-03-25 and 0.1.4 dated 2020-03-30
DESCRIPTION | 16 ++++++++-------- MD5 | 20 ++++++++++---------- R/spherepc.R | 43 ++++++++++++++++++++----------------------- man/ExtrinsicMean.Rd | 2 +- man/GenerateCircle.Rd | 1 + man/LPG.Rd | 12 ++++++------ man/PGA.Rd | 8 ++++---- man/Rotate.Rd | 4 ++-- man/Rotate.inv.Rd | 2 +- man/SPC.Hauberg.Rd | 7 +++---- man/SPC.Rd | 12 +++++------- 11 files changed, 61 insertions(+), 66 deletions(-)
Title: Classical, Reloaded and Adaptive FastICA Algorithms
Description: Algorithms for classical symmetric and deflation-based FastICA, reloaded deflation-based FastICA algorithm and an algorithm for adaptive deflation-based FastICA using multiple nonlinearities. For details, see Miettinen et al. (2014) <doi:10.1109/TSP.2014.2356442> and Miettinen et al. (2017) <doi:10.1016/j.sigpro.2016.08.028>. The package is described in Miettinen, Nordhausen and Taskinen (2018) <doi:10.32614/RJ-2018-046>.
Author: Jari Miettinen [aut, cre] (<https://orcid.org/0000-0002-3270-7014>),
Klaus Nordhausen [aut] (<https://orcid.org/0000-0002-3758-8501>),
Hannu Oja [aut],
Sara Taskinen [aut] (<https://orcid.org/0000-0001-9470-7258>)
Maintainer: Jari Miettinen <jari.p.miettinen@aalto.fi>
Diff between fICA versions 1.1-0 dated 2017-09-12 and 1.1-1 dated 2020-03-30
DESCRIPTION | 24 +++++++++++++++++------- MD5 | 9 +++++---- R/fICA.R | 2 +- inst/CITATION |only inst/ChangeLog | 4 ++++ man/fICA-package.Rd | 10 +++++++--- 6 files changed, 34 insertions(+), 15 deletions(-)
Title: Mixed Proportional Hazard Competing Risk Model
Description: Estimation of piecewise constant mixed proportional hazard competing risk model with NPMLE.
The model is described in S. Gaure et al. (2007) <doi:10.1016/j.jeconom.2007.01.015>,
J. Heckman and B. Singer (1984) <doi:10.2307/1911491>, and
B.G. Lindsay (1983) <doi:10.1214/aos/1176346059>.
Author: Simen Gaure [aut, cre] (<https://orcid.org/0000-0001-7251-8747>)
Maintainer: Simen Gaure <simen@gaure.no>
Diff between durmod versions 1.1-2 dated 2019-08-21 and 1.1-4 dated 2020-03-30
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/duration.R | 8 ++++---- R/utils.R | 6 +++--- build/vignette.rds |binary inst/doc/whatmph.R | 26 +++++++++++++------------- inst/doc/whatmph.pdf |binary man/durdata.Rd | 2 +- man/flatten.Rd | 7 +++++-- man/mphcrm.Rd | 17 ++++++++++++----- man/mphcrm.control.Rd | 2 +- man/smashlevels.Rd | 6 +++--- src/cfunctions.cpp | 1 - 13 files changed, 59 insertions(+), 50 deletions(-)
Title: Subtracting Summary Statistics of One or more Cohorts from
Meta-GWAS Results
Description: If results from a meta-GWAS are used for validation in one of the cohorts that was included in the meta-analysis, this will yield biased (i.e. too optimistic) results.
The validation cohort needs to be independent from the meta-Genome-Wide-Association-Study (meta-GWAS) results.
'MetaSubtract' will subtract the results of the respective cohort from the meta-GWAS results analytically without having to redo the meta-GWAS analysis using the leave-one-out methodology.
It can handle different meta-analyses methods and takes into account if single or double genomic control correction was applied to the original meta-analysis.
It can also handle different meta-analysis methods. It can be used for whole GWAS, but also for a limited set of genetic markers.
See for application: Nolte I.M. et al. (2017); <doi: 10.1038/ejhg.2017.50>.
Author: Ilja M. Nolte
Maintainer: Ilja M. Nolte <i.m.nolte@umcg.nl>
Diff between MetaSubtract versions 1.50 dated 2019-06-11 and 1.60 dated 2020-03-30
DESCRIPTION | 15 +- MD5 | 6 - R/MetaSubtract.r | 299 ++++++++++++++++++++++++++++++++------------------- man/meta.subtract.Rd | 8 + 4 files changed, 211 insertions(+), 117 deletions(-)
Title: Provides Foreach Looping Construct
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation
of a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Author: Hong Ooi [cre],
Microsoft [aut, cph],
Steve Weston [aut]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between foreach versions 1.4.8 dated 2020-02-09 and 1.5.0 dated 2020-03-30
DESCRIPTION | 8 MD5 | 29 +-- NAMESPACE | 2 NEWS.md | 4 R/onLoad.R | 2 README.md |only build/vignette.rds |binary inst/doc/foreach.html | 22 +- man/foreach-ext.Rd | 188 ++++++++++----------- man/foreach-package.Rd | 120 ++++++------- man/foreach.Rd | 434 ++++++++++++++++++++++++------------------------- man/getDoParWorkers.Rd | 90 +++++----- man/getDoSeqWorkers.Rd | 88 ++++----- man/registerDoSEQ.Rd | 46 ++--- man/setDoPar.Rd | 50 ++--- man/setDoSeq.Rd | 50 ++--- 16 files changed, 569 insertions(+), 564 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott is the sole author and creator of the BOOM project.
Some code in the BOOM libraries has been modified from other open source
projects. These include Cephes (obtained from Netlib, written by Stephen
L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a
modified version of the R math libraries (R core development team). Original
copyright notices have been maintained in all source files. In these cases,
copyright claimed by Steven L. Scott is limited to modifications made to the
original code. Google claims copyright for code written while Steven
L. Scott was employed at Google from 2008 - 2018, but BOOM is not an
officially supported Google project.
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9.3 dated 2019-10-07 and 0.9.4 dated 2020-03-30
DESCRIPTION | 10 - MD5 | 60 ++++----- inst/include/Eigen/src/Core/AssignEvaluator.h | 64 +++++----- inst/include/Eigen/src/Core/products/GeneralMatrixVector.h | 8 - inst/include/LinAlg/Selector.hpp | 34 ++--- inst/include/LinAlg/SpdMatrix.hpp | 8 - inst/include/Models/Glm/Glm.hpp | 29 +++- inst/include/Models/MvnBase.hpp | 2 inst/include/Models/StateSpace/DynamicInterceptRegression.hpp | 22 +-- inst/include/Models/StateSpace/StateModelVector.hpp | 64 ++++++++-- inst/include/Models/StateSpace/StateSpaceLogitModel.hpp | 11 + inst/include/Models/StateSpace/StateSpaceModelBase.hpp | 18 +- inst/include/Models/StateSpace/StateSpacePoissonModel.hpp | 22 +++ inst/include/Models/StateSpace/StateSpaceRegressionModel.hpp | 8 - inst/include/Models/StateSpace/StateSpaceStudentRegressionModel.hpp | 19 ++ inst/include/distributions/trun_gamma.hpp | 36 +++++ inst/include/stats/IQagent.hpp | 1 inst/include/stats/Spline.hpp | 5 src/LinAlg/Selector.cpp | 38 ++--- src/LinAlg/SpdMatrix.cpp | 8 - src/Models/Glm/RegressionModel.cpp | 33 ++--- src/Models/StateSpace/StateSpaceLogitModel.cpp | 9 - src/Models/StateSpace/StateSpaceModelBase.cpp | 16 +- src/Models/StateSpace/StateSpacePoissonModel.cpp | 5 src/Models/StateSpace/StateSpaceRegressionModel.cpp | 6 src/Models/StateSpace/StateSpaceStudentRegressionModel.cpp | 7 - src/distributions/trun_gamma.cpp | 41 ++++-- src/stats/Bspline.cpp | 5 src/stats/Design.cpp | 2 src/stats/IQagent.cpp | 12 + src/stats/Spline.cpp | 8 + 31 files changed, 395 insertions(+), 216 deletions(-)
Title: Amazon Web Services Customer Engagement APIs
Description: Interface to Amazon Web Services customer engagement APIs,
including 'Simple Email Service', 'Connect' contact center service,
and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.customer.engagement versions 0.1.6 dated 2020-01-12 and 0.1.7 dated 2020-03-30
DESCRIPTION | 8 MD5 | 180 ++++---- R/connect_operations.R | 210 +++++----- R/connect_service.R | 7 R/pinpoint_service.R | 7 R/pinpointemail_service.R | 7 R/pinpointsmsvoice_service.R | 7 R/ses_operations.R | 166 +++---- R/ses_service.R | 7 man/connect.Rd | 4 man/connect_get_current_metric_data.Rd | 68 +-- man/connect_get_metric_data.Rd | 153 ++++--- man/pinpoint.Rd | 2 man/pinpoint_create_campaign.Rd | 2 man/pinpoint_create_email_template.Rd | 2 man/pinpoint_create_journey.Rd | 2 man/pinpoint_create_push_template.Rd | 2 man/pinpoint_create_sms_template.Rd | 2 man/pinpoint_create_voice_template.Rd | 2 man/pinpoint_delete_email_template.Rd | 2 man/pinpoint_delete_push_template.Rd | 2 man/pinpoint_delete_sms_template.Rd | 2 man/pinpoint_delete_voice_template.Rd | 2 man/pinpoint_get_application_date_range_kpi.Rd | 2 man/pinpoint_get_apps.Rd | 2 man/pinpoint_get_campaign_date_range_kpi.Rd | 2 man/pinpoint_get_email_template.Rd | 2 man/pinpoint_get_push_template.Rd | 2 man/pinpoint_get_segment_versions.Rd | 2 man/pinpoint_get_sms_template.Rd | 2 man/pinpoint_get_voice_template.Rd | 2 man/pinpoint_list_template_versions.Rd | 2 man/pinpoint_list_templates.Rd | 2 man/pinpoint_send_messages.Rd | 2 man/pinpoint_send_users_messages.Rd | 2 man/pinpoint_update_campaign.Rd | 2 man/pinpoint_update_email_template.Rd | 2 man/pinpoint_update_journey.Rd | 2 man/pinpoint_update_journey_state.Rd | 2 man/pinpoint_update_push_template.Rd | 2 man/pinpoint_update_sms_template.Rd | 2 man/pinpoint_update_template_active_version.Rd | 2 man/pinpoint_update_voice_template.Rd | 2 man/pinpointemail.Rd | 4 man/pinpointsmsvoice.Rd | 4 man/ses.Rd | 4 man/ses_clone_receipt_rule_set.Rd | 4 man/ses_create_receipt_filter.Rd | 4 man/ses_create_receipt_rule.Rd | 4 man/ses_create_receipt_rule_set.Rd | 4 man/ses_delete_identity.Rd | 4 man/ses_delete_identity_policy.Rd | 4 man/ses_delete_receipt_filter.Rd | 4 man/ses_delete_receipt_rule.Rd | 4 man/ses_delete_receipt_rule_set.Rd | 4 man/ses_delete_verified_email_address.Rd | 4 man/ses_describe_active_receipt_rule_set.Rd | 4 man/ses_describe_receipt_rule.Rd | 4 man/ses_describe_receipt_rule_set.Rd | 4 man/ses_get_account_sending_enabled.Rd | 4 man/ses_get_identity_dkim_attributes.Rd | 4 man/ses_get_identity_mail_from_domain_attributes.Rd | 4 man/ses_get_identity_notification_attributes.Rd | 4 man/ses_get_identity_policies.Rd | 4 man/ses_get_identity_verification_attributes.Rd | 4 man/ses_get_send_quota.Rd | 4 man/ses_get_send_statistics.Rd | 4 man/ses_list_identities.Rd | 4 man/ses_list_identity_policies.Rd | 4 man/ses_list_receipt_filters.Rd | 4 man/ses_list_receipt_rule_sets.Rd | 4 man/ses_list_verified_email_addresses.Rd | 4 man/ses_put_identity_policy.Rd | 6 man/ses_reorder_receipt_rule_set.Rd | 4 man/ses_send_email.Rd | 4 man/ses_send_raw_email.Rd | 4 man/ses_set_active_receipt_rule_set.Rd | 4 man/ses_set_identity_dkim_enabled.Rd | 4 man/ses_set_identity_feedback_forwarding_enabled.Rd | 4 man/ses_set_identity_headers_in_notifications_enabled.Rd | 4 man/ses_set_identity_mail_from_domain.Rd | 4 man/ses_set_identity_notification_topic.Rd | 4 man/ses_set_receipt_rule_position.Rd | 4 man/ses_update_account_sending_enabled.Rd | 4 man/ses_update_configuration_set_reputation_metrics_enabled.Rd | 4 man/ses_update_configuration_set_sending_enabled.Rd | 4 man/ses_update_receipt_rule.Rd | 4 man/ses_verify_domain_dkim.Rd | 4 man/ses_verify_domain_identity.Rd | 4 man/ses_verify_email_address.Rd | 4 man/ses_verify_email_identity.Rd | 4 91 files changed, 568 insertions(+), 512 deletions(-)
More information about paws.customer.engagement at CRAN
Permanent link
Title: Amazon Web Services Cost Management APIs
Description: Interface to Amazon Web Services cost management APIs,
including cost and usage reports, budgets, pricing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.cost.management versions 0.1.6 dated 2020-01-12 and 0.1.7 dated 2020-03-30
DESCRIPTION | 8 - MD5 | 66 +++++------ R/budgets_service.R | 7 - R/costandusagereportservice_operations.R | 6 - R/costandusagereportservice_service.R | 7 - R/costexplorer_operations.R | 2 R/costexplorer_service.R | 7 - R/marketplacecommerceanalytics_service.R | 7 - R/marketplaceentitlementservice_service.R | 7 - R/marketplacemetering_operations.R | 2 R/marketplacemetering_service.R | 7 - R/pricing_operations.R | 6 - R/pricing_service.R | 7 - man/budgets.Rd | 4 man/costandusagereportservice.Rd | 4 man/costandusagereportservice_delete_report_definition.Rd | 4 man/costandusagereportservice_describe_report_definitions.Rd | 4 man/costandusagereportservice_put_report_definition.Rd | 4 man/costexplorer.Rd | 2 man/costexplorer_create_cost_category_definition.Rd | 2 man/costexplorer_delete_cost_category_definition.Rd | 2 man/costexplorer_describe_cost_category_definition.Rd | 2 man/costexplorer_get_reservation_purchase_recommendation.Rd | 2 man/costexplorer_get_reservation_utilization.Rd | 2 man/costexplorer_list_cost_category_definitions.Rd | 2 man/costexplorer_update_cost_category_definition.Rd | 2 man/marketplacecommerceanalytics.Rd | 4 man/marketplaceentitlementservice.Rd | 4 man/marketplacemetering.Rd | 4 man/marketplacemetering_register_usage.Rd | 2 man/pricing.Rd | 4 man/pricing_describe_services.Rd | 4 man/pricing_get_attribute_values.Rd | 4 man/pricing_get_products.Rd | 4 34 files changed, 99 insertions(+), 106 deletions(-)
More information about paws.cost.management at CRAN
Permanent link
Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program
simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>].
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>),
Gregor Gorjanc [ctb] (<https://orcid.org/0000-0001-8008-2787>),
David Wilson [ctb],
Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>),
John Hickey [ctb] (<https://orcid.org/0000-0001-5675-3974>)
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>
Diff between AlphaSimR versions 0.11.1 dated 2020-01-13 and 0.12.1 dated 2020-03-30
AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addSnpChip.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addStructuredSnpChips.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitA.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitAD.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitADE.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitADEG.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitADG.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitAE.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitAEG.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_addTraitAG.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_manAddSnpChip.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_manAddTrait.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_new.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_removeFounderPop.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_removeSnpChip.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_removeTrait.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_rescaleTraits.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_resetPed.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_restrSegSites.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setCorE.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setGender.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setMeiosis.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setTrackPed.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setTrackRec.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_setVarE.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchFemaleMap.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchFounderPop.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchGenMap.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchMaleMap.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchSnpChip.Rd |only AlphaSimR-0.11.1/AlphaSimR/man/SimParam_switchTrait.Rd |only AlphaSimR-0.12.1/AlphaSimR/DESCRIPTION | 8 AlphaSimR-0.12.1/AlphaSimR/MD5 | 118 AlphaSimR-0.12.1/AlphaSimR/NAMESPACE | 1 AlphaSimR-0.12.1/AlphaSimR/NEWS | 18 AlphaSimR-0.12.1/AlphaSimR/R/Class-Pop.R | 8 AlphaSimR-0.12.1/AlphaSimR/R/Class-SimParam.R | 3804 ++++------ AlphaSimR-0.12.1/AlphaSimR/R/GS.R | 20 AlphaSimR-0.12.1/AlphaSimR/R/crossing.R | 28 AlphaSimR-0.12.1/AlphaSimR/R/founderPop.R | 10 AlphaSimR-0.12.1/AlphaSimR/R/polyploids.R | 146 AlphaSimR-0.12.1/AlphaSimR/R/popSummary.R | 83 AlphaSimR-0.12.1/AlphaSimR/R/pullGeno.R | 23 AlphaSimR-0.12.1/AlphaSimR/inst/doc/intro.html | 14 AlphaSimR-0.12.1/AlphaSimR/inst/doc/traits.Rmd | 2 AlphaSimR-0.12.1/AlphaSimR/inst/doc/traits.pdf |binary AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP2.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_D.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_D2.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_GCA.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_GCA2.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_SCA.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/RRBLUP_SCA2.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/SimParam.Rd | 1258 +++ AlphaSimR-0.12.1/AlphaSimR/man/fastRRBLUP.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/genParam.Rd | 17 AlphaSimR-0.12.1/AlphaSimR/man/makeCross.Rd | 4 AlphaSimR-0.12.1/AlphaSimR/man/makeCross2.Rd | 4 AlphaSimR-0.12.1/AlphaSimR/man/mergeGenome.Rd |only AlphaSimR-0.12.1/AlphaSimR/man/pullIbdHaplo.Rd | 10 AlphaSimR-0.12.1/AlphaSimR/man/pullQtlGeno.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/pullQtlHaplo.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/pullSegSiteGeno.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/pullSegSiteHaplo.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/pullSnpGeno.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/pullSnpHaplo.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/man/reduceGenome.Rd | 7 AlphaSimR-0.12.1/AlphaSimR/man/sampleHaplo.Rd | 4 AlphaSimR-0.12.1/AlphaSimR/man/setEBV.Rd | 2 AlphaSimR-0.12.1/AlphaSimR/src/getGeno.cpp | 2 AlphaSimR-0.12.1/AlphaSimR/src/getGv.cpp | 2 AlphaSimR-0.12.1/AlphaSimR/src/meiosis.cpp | 29 AlphaSimR-0.12.1/AlphaSimR/src/packHaplo.cpp | 4 AlphaSimR-0.12.1/AlphaSimR/tests/testthat/test-addTrait.R | 10 AlphaSimR-0.12.1/AlphaSimR/vignettes/traits.Rmd | 2 76 files changed, 3156 insertions(+), 2512 deletions(-)
Title: Easy Calculation and Visualisation of Confidence Intervals
Description: Functions to speed up the exploratory analysis of simple
datasets using 'dplyr'. Functions are provided to do the
common tasks of calculating confidence intervals.
Author: Conor Neilson [aut, cre]
Maintainer: Conor Neilson <condwanaland@gmail.com>
Diff between summariser versions 2.0.0 dated 2020-02-23 and 2.3.0 dated 2020-03-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test_calculations.R | 7 ++++++- 4 files changed, 17 insertions(+), 8 deletions(-)
Title: Analysis of Repeatability and Reproducibility Studies with
Ordinal Measurements
Description: Implements Bayesian data analyses of balanced repeatability and reproducibility studies with ordinal measurements. Model fitting is based on MCMC posterior sampling with 'rjags'. Function ordinalRR() directly carries out the model fitting, and this function has the flexibility to allow the user to specify key aspects of the model, e.g., fixed versus random effects. Functions for preprocessing data and for the numerical and graphical display of a fitted model are also provided. There are also functions for displaying the model at fixed (user-specified) parameters and for simulating a hypothetical data set at a fixed (user-specified) set of parameters for a random-effects rater population. For additional technical details, refer to Culp, Ryan, Chen, and Hamada (2018) and cite this Technometrics paper when referencing any aspect of this work. The demo of this package reproduces results from the Technometrics paper.
Author: Ken Ryan <kjryan@mail.wvu.edu>
Maintainer: Ken Ryan <kjryan@mail.wvu.edu>
Diff between ordinalRR versions 1.0 dated 2018-03-14 and 1.1 dated 2020-03-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/ordinalRR.R | 12 ++++++------ demo/ordinalRR.R | 6 +++--- inst/CITATION | 6 +++--- man/ordinalRR.Rd | 2 +- 6 files changed, 22 insertions(+), 22 deletions(-)
Title: Bootstrap Resampling for Mixed Effects and Plain Models
Description: Performs bootstrap resampling for most models that update() works for. There
are two primary functions: bootstrap_model() performs block resampling if random effects
are present, and case resampling if not; bootstrap_ci() converts output from
bootstrap model runs into confidence intervals and p-values. By default,
bootstrap_model() calls bootstrap_ci().
Package motivated by Humphrey and Swingley (2018) <arXiv:1805.08670>.
Author: Colman Humphrey [aut, cre]
Maintainer: Colman Humphrey <humphrc@tcd.ie>
Diff between glmmboot versions 0.5.0 dated 2019-12-16 and 0.5.1 dated 2020-03-30
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS.md | 9 ++++---- R/bootstrap_methods.R | 2 - inst/doc/quick_use.html | 50 ++++++++++++++++++++++++------------------------ man/gen_vector_match.Rd | 2 - 6 files changed, 41 insertions(+), 40 deletions(-)
Title: Quantifying Systematic Heterogeneity in Meta-Analysis
Description: Quantifying systematic heterogeneity in meta-analysis using R.
The M statistic aggregates heterogeneity information across multiple
variants to, identify systematic heterogeneity patterns and their direction
of effect in meta-analysis. It's primary use is to identify outlier studies,
which either show "null" effects or consistently show stronger or weaker
genetic effects than average across, the panel of variants examined in a
GWAS meta-analysis. In contrast to conventional heterogeneity metrics
(Q-statistic, I-squared and tau-squared) which measure random heterogeneity
at individual variants, M measures systematic (non-random)
heterogeneity across multiple independently associated variants. Systematic
heterogeneity can arise in a meta-analysis due to differences in the study
characteristics of participating studies. Some of the differences may
include: ancestry, allele frequencies, phenotype definition, age-of-disease
onset, family-history, gender, linkage disequilibrium and quality control
thresholds. See <https://magosil86.github.io/getmstatistic/> for statistical
statistical theory, documentation and examples.
Author: Lerato E Magosi [aut],
Jemma C Hopewell [aut],
Martin Farrall [aut],
Lerato E Magosi [cre]
Maintainer: Lerato E Magosi <magosil86@gmail.com>
Diff between getmstatistic versions 0.2.0 dated 2019-03-15 and 0.2.1 dated 2020-03-30
DESCRIPTION | 8 +- MD5 | 21 +++--- NAMESPACE | 1 NEWS.md |only R/compute_mstatistics.R | 107 ++++++++++++++++++----------------- R/driver_compute_mstatistics.R | 32 ++++++++-- R/util_draw_table.R | 37 +++++++----- inst/doc/getmstatistic-tutorial.Rmd | 27 +++++++- inst/doc/getmstatistic-tutorial.html | 27 +++++++- man/draw_table.Rd | 32 ++++++---- man/getmstatistic.Rd | 31 ++++++++-- vignettes/getmstatistic-tutorial.Rmd | 27 +++++++- 12 files changed, 232 insertions(+), 118 deletions(-)
Title: Vehicular Emissions by Top-Down Methods
Description: Creates emissions for use in air quality models. Vehicular emissions
are estimated by a top-down approach, total emissions are calculated using the
statistical description of the fleet of vehicles, the emission is spatially
distributed according to satellite images or openstreetmap data
<https://www.openstreetmap.org> and then distributed temporarily
(Vara-Vela et al., 2016, <doi:10.5194/acp-16-777-2016>).
Author: Daniel Schuch [aut, cre] (<https://orcid.org/0000-0001-5977-4519>),
Sergio Ibarra-Espinosa [aut] (<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Daniel Schuch <schuch@usp.br>
Diff between EmissV versions 0.665.1.0 dated 2019-04-02 and 0.665.2.0 dated 2020-03-30
DESCRIPTION | 12 +- MD5 | 59 +++++----- NAMESPACE | 3 NEWS.md | 14 ++ R/gridinfo.R | 8 + R/lineSource.R | 48 ++++---- R/pointSource.R | 2 R/profile.R | 2 R/rasterSource.R | 4 R/read.R | 104 ++++++++++++++++- R/species.R | 4 inst/CITATION | 18 ++- inst/extdata/dmsp_hi-res.tiff |only man/areaSource.Rd | 98 ++++++++-------- man/emission.Rd | 131 +++++++++++----------- man/emissionFactor.Rd | 88 ++++++++------- man/gridInfo.Rd | 84 +++++++------- man/lineSource.Rd | 132 +++++++++++----------- man/perfil.Rd | 218 ++++++++++++++++++------------------- man/plumeRise.Rd | 148 ++++++++++++------------- man/pointSource.Rd | 78 ++++++------- man/rasterSource.Rd | 88 +++++++-------- man/read.Rd | 178 +++++++++++++++++------------- man/speciation.Rd | 76 ++++++------ man/species.Rd | 240 ++++++++++++++++++++--------------------- man/streetDist.Rd | 170 +++++++++++++++-------------- man/totalEmission.Rd | 76 ++++++------ man/totalVOC.Rd | 114 +++++++++---------- man/vehicles.Rd | 158 ++++++++++++++------------ tests/testthat/Rplots.pdf |binary tests/testthat/test-emission.R | 32 ----- 31 files changed, 1258 insertions(+), 1129 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair>),
and Polish Institute of Meterology and Water Management - National Research Institute (<https://dane.imgw.pl>).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 0.9.2 dated 2020-03-21 and 0.9.3 dated 2020-03-30
DESCRIPTION | 8 LICENSE | 2 MD5 | 33 +- NAMESPACE | 2 NEWS.md | 7 R/meteo_imgw_daily.R | 10 R/meteo_imgw_hourly.R | 9 R/meteo_imgw_monthly.R | 20 + R/meteo_noaa_co2.R |only R/precip_split.R | 2 README.md | 11 inst/doc/getstarted.R | 90 ++++-- inst/doc/getstarted.Rmd | 203 +++++++++---- inst/doc/getstarted.html | 669 ++++++++++++++++++++++++++++++++++++++++------ man/meteo_imgw_monthly.Rd | 10 man/meteo_noaa_co2.Rd |only man/precip_split.Rd | 2 tests/testthat/Rplots.pdf |only vignettes/getstarted.Rmd | 203 +++++++++---- 19 files changed, 994 insertions(+), 287 deletions(-)
Title: Approximately Optimal Fine Balance Matching with Multiple Groups
Description: Tools for constructing a matched design with multiple comparison groups.
Further specifications of refined covariate balance restriction and exact match on
covariate can be imposed. Matches are approximately optimal in the sense that the
cost of the solution is at most twice the optimal cost, Crama and Spieksma (1992)
<doi:10.1016/0377-2217(92)90078-N>, Karmakar, Small and Rosenbaum (2019)
<doi:10.1080/10618600.2019.1584900>.
Author: Bikram Karmakar
Maintainer: Bikram Karmakar <bkarmakar@ufl.edu>
Diff between approxmatch versions 1.0 dated 2017-11-05 and 2.0 dated 2020-03-30
DESCRIPTION | 11 - MD5 | 24 +- R/kwaymatching.R | 374 ++++++++++++++++++++++----------------------- R/multigrp_dist_struc.R | 4 R/nrbalancematch.R | 182 ++++++++++++--------- build/partial.rdb |binary data/Dodgeram.rda |binary man/Dodgeram.Rd | 4 man/approxmatch-package.Rd | 17 +- man/covbalance.Rd | 4 man/kwaymatching.Rd | 7 man/multigrp_dist_struc.Rd | 23 ++ man/nrbalancematch.Rd | 4 13 files changed, 358 insertions(+), 296 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 2.1.3 dated 2019-06-06 and 3.0.0 dated 2020-03-30
tibble-2.1.3/tibble/R/check-names.R |only tibble-2.1.3/tibble/R/compat-name-repair.R |only tibble-2.1.3/tibble/R/exports.R |only tibble-2.1.3/tibble/R/msg-format.R |only tibble-2.1.3/tibble/R/msg.R |only tibble-2.1.3/tibble/R/repair-names.R |only tibble-2.1.3/tibble/R/tbl-df.r |only tibble-2.1.3/tibble/R/type-sum.r |only tibble-2.1.3/tibble/R/utils-format.r |only tibble-2.1.3/tibble/R/utils.r |only tibble-2.1.3/tibble/R/wrap.R |only tibble-2.1.3/tibble/inst/doc/extending.R |only tibble-2.1.3/tibble/man/name-repair-retired.Rd |only tibble-2.1.3/tibble/tests/testthat/output |only tibble-2.1.3/tibble/tests/testthat/test-data-frame.R |only tibble-2.1.3/tibble/tests/testthat/test-msg-format.R |only tibble-2.1.3/tibble/tests/testthat/test-name-repair.R |only tibble-2.1.3/tibble/tests/testthat/test-syntactic-names.R |only tibble-2.1.3/tibble/tests/testthat/test-tbl-df.R |only tibble-2.1.3/tibble/tests/testthat/test-trunc-mat.R |only tibble-3.0.0/tibble/DESCRIPTION | 59 tibble-3.0.0/tibble/MD5 | 315 ++-- tibble-3.0.0/tibble/NAMESPACE | 30 tibble-3.0.0/tibble/NEWS.md | 129 + tibble-3.0.0/tibble/R/aaa-pillar.R |only tibble-3.0.0/tibble/R/add.R | 197 +- tibble-3.0.0/tibble/R/as_tibble.R | 227 ++ tibble-3.0.0/tibble/R/class-tbl_df.R |only tibble-3.0.0/tibble/R/compat-friendly-type.R |only tibble-3.0.0/tibble/R/compat-lazyeval.R | 2 tibble-3.0.0/tibble/R/compat-lifecycle.R | 202 -- tibble-3.0.0/tibble/R/compat-purrr.R | 46 tibble-3.0.0/tibble/R/deprecated.R | 35 tibble-3.0.0/tibble/R/dftbl.R |only tibble-3.0.0/tibble/R/enframe.R | 18 tibble-3.0.0/tibble/R/error.R |only tibble-3.0.0/tibble/R/glimpse.R | 44 tibble-3.0.0/tibble/R/lst.R | 36 tibble-3.0.0/tibble/R/names.R |only tibble-3.0.0/tibble/R/new.R | 86 - tibble-3.0.0/tibble/R/options.R |only tibble-3.0.0/tibble/R/pipe.R |only tibble-3.0.0/tibble/R/print.R |only tibble-3.0.0/tibble/R/rownames.R | 48 tibble-3.0.0/tibble/R/str.R |only tibble-3.0.0/tibble/R/subsetting-matrix.R |only tibble-3.0.0/tibble/R/subsetting.R | 771 +++++++++- tibble-3.0.0/tibble/R/tbl_sum.R |only tibble-3.0.0/tibble/R/tibble-package.R | 37 tibble-3.0.0/tibble/R/tibble.R | 233 ++- tibble-3.0.0/tibble/R/tidy_names.R |only tibble-3.0.0/tibble/R/tribble.R | 102 - tibble-3.0.0/tibble/R/utils-msg-format.R |only tibble-3.0.0/tibble/R/utils-tick.R |only tibble-3.0.0/tibble/R/utils.R |only tibble-3.0.0/tibble/R/view.R | 34 tibble-3.0.0/tibble/R/zzz.R | 7 tibble-3.0.0/tibble/README.md | 15 tibble-3.0.0/tibble/build/tibble.pdf |binary tibble-3.0.0/tibble/build/vignette.rds |binary tibble-3.0.0/tibble/inst/doc/extending.Rmd | 444 ----- tibble-3.0.0/tibble/inst/doc/extending.html | 518 ------ tibble-3.0.0/tibble/inst/doc/invariants.R |only tibble-3.0.0/tibble/inst/doc/invariants.Rmd |only tibble-3.0.0/tibble/inst/doc/invariants.html |only tibble-3.0.0/tibble/inst/doc/tibble.R | 26 tibble-3.0.0/tibble/inst/doc/tibble.Rmd | 42 tibble-3.0.0/tibble/inst/doc/tibble.html | 138 - tibble-3.0.0/tibble/inst/doc/types.R |only tibble-3.0.0/tibble/inst/doc/types.Rmd |only tibble-3.0.0/tibble/inst/doc/types.html |only tibble-3.0.0/tibble/man/add_column.Rd | 50 tibble-3.0.0/tibble/man/add_row.Rd | 39 tibble-3.0.0/tibble/man/as_tibble.Rd | 112 - tibble-3.0.0/tibble/man/deprecated.Rd | 2 tibble-3.0.0/tibble/man/enframe.Rd | 4 tibble-3.0.0/tibble/man/figures/lifecycle-superseded.svg |only tibble-3.0.0/tibble/man/formatting.Rd | 11 tibble-3.0.0/tibble/man/frame_matrix.Rd | 14 tibble-3.0.0/tibble/man/glimpse.Rd | 19 tibble-3.0.0/tibble/man/is.tibble.Rd | 2 tibble-3.0.0/tibble/man/knit_print.trunc_mat.Rd | 2 tibble-3.0.0/tibble/man/lst.Rd | 14 tibble-3.0.0/tibble/man/name-repair-superseded.Rd |only tibble-3.0.0/tibble/man/name-repair.Rd | 152 - tibble-3.0.0/tibble/man/new_tibble.Rd | 17 tibble-3.0.0/tibble/man/print.tbl_df.Rd | 4 tibble-3.0.0/tibble/man/reexports.Rd | 7 tibble-3.0.0/tibble/man/rownames.Rd | 25 tibble-3.0.0/tibble/man/subsetting.Rd | 33 tibble-3.0.0/tibble/man/tbl_df-class.Rd | 14 tibble-3.0.0/tibble/man/tbl_sum.Rd | 6 tibble-3.0.0/tibble/man/tibble-package.Rd | 57 tibble-3.0.0/tibble/man/tibble.Rd | 64 tibble-3.0.0/tibble/man/tribble.Rd | 14 tibble-3.0.0/tibble/man/view.Rd | 15 tibble-3.0.0/tibble/src/attributes.c |only tibble-3.0.0/tibble/src/coerce.c | 1 tibble-3.0.0/tibble/src/init.c | 3 tibble-3.0.0/tibble/src/matrixToDataFrame.c | 8 tibble-3.0.0/tibble/src/tibble.h | 2 tibble-3.0.0/tibble/tests/testthat/add.txt |only tibble-3.0.0/tibble/tests/testthat/as_tibble.txt |only tibble-3.0.0/tibble/tests/testthat/class-tbl_df.txt |only tibble-3.0.0/tibble/tests/testthat/enframe.txt |only tibble-3.0.0/tibble/tests/testthat/error.txt |only tibble-3.0.0/tibble/tests/testthat/glimpse.txt |only tibble-3.0.0/tibble/tests/testthat/helper-error.R | 9 tibble-3.0.0/tibble/tests/testthat/helper-expectations.R |only tibble-3.0.0/tibble/tests/testthat/helper-output.R | 15 tibble-3.0.0/tibble/tests/testthat/helper-zzz.R |only tibble-3.0.0/tibble/tests/testthat/msg.txt |only tibble-3.0.0/tibble/tests/testthat/names.txt |only tibble-3.0.0/tibble/tests/testthat/new.txt |only tibble-3.0.0/tibble/tests/testthat/rownames.txt |only tibble-3.0.0/tibble/tests/testthat/str.txt |only tibble-3.0.0/tibble/tests/testthat/subsetting.txt |only tibble-3.0.0/tibble/tests/testthat/tbl_sum.txt |only tibble-3.0.0/tibble/tests/testthat/test-add.R | 79 - tibble-3.0.0/tibble/tests/testthat/test-as_tibble.R |only tibble-3.0.0/tibble/tests/testthat/test-class-tbl_df.R |only tibble-3.0.0/tibble/tests/testthat/test-enframe.R | 16 tibble-3.0.0/tibble/tests/testthat/test-error.R |only tibble-3.0.0/tibble/tests/testthat/test-glimpse.R | 121 - tibble-3.0.0/tibble/tests/testthat/test-matrix.R | 22 tibble-3.0.0/tibble/tests/testthat/test-msg.R | 515 +----- tibble-3.0.0/tibble/tests/testthat/test-names.R |only tibble-3.0.0/tibble/tests/testthat/test-new.R |only tibble-3.0.0/tibble/tests/testthat/test-print.R |only tibble-3.0.0/tibble/tests/testthat/test-rownames.R | 38 tibble-3.0.0/tibble/tests/testthat/test-str.R |only tibble-3.0.0/tibble/tests/testthat/test-subsetting-matrix.R |only tibble-3.0.0/tibble/tests/testthat/test-subsetting.R |only tibble-3.0.0/tibble/tests/testthat/test-tbl_sum.R |only tibble-3.0.0/tibble/tests/testthat/test-tibble.R |only tibble-3.0.0/tibble/tests/testthat/test-tribble.R | 50 tibble-3.0.0/tibble/tests/testthat/test-utils-msg-format.R |only tibble-3.0.0/tibble/tests/testthat/test-utils-tick.R |only tibble-3.0.0/tibble/tests/testthat/test-utils.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-add.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-data-frame.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-enframe.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-glimpse.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-has-name.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-lst.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-matrix.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-msg-format.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-msg.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-name-repair.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-options.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-rownames.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-string-to-indices.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-syntactic-names.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-tbl-df.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-tidy_names.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-tribble.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-trunc-mat.R |only tibble-3.0.0/tibble/tests/testthat/test-zzz-type_sum.R |only tibble-3.0.0/tibble/tests/testthat/tibble.txt |only tibble-3.0.0/tibble/tests/testthat/tick.txt |only tibble-3.0.0/tibble/tests/testthat/tribble.txt |only tibble-3.0.0/tibble/tests/testthat/trunc_mat.txt |only tibble-3.0.0/tibble/tests/testthat/trunc_mat_full.txt |only tibble-3.0.0/tibble/tests/testthat/utils-msg-format.txt |only tibble-3.0.0/tibble/tests/testthat/zzz-output |only tibble-3.0.0/tibble/vignettes/extending.Rmd | 444 ----- tibble-3.0.0/tibble/vignettes/invariants.Rmd |only tibble-3.0.0/tibble/vignettes/tibble.Rmd | 42 tibble-3.0.0/tibble/vignettes/types.Rmd |only tibble-3.0.0/tibble/vignettes/wip |only 170 files changed, 2705 insertions(+), 3178 deletions(-)
Title: Acquisition and Processing of MODIS Products
Description: Download and processing functionalities for the Moderate Resolution
Imaging Spectroradiometer (MODIS). The package provides automated access to the
global online data archives LP DAAC (<https://lpdaac.usgs.gov/>), LAADS
(<https://ladsweb.modaps.eosdis.nasa.gov/>) and NSIDC (<https://nsidc.org/>)
as well as processing capabilities such as file conversion, mosaicking,
subsetting and time series filtering.
Author: Matteo Mattiuzzi [aut],
Jan Verbesselt [ctb],
Tomislav Hengl [ctb],
Anja Klisch [ctb],
Forrest Stevens [ctb],
Steven Mosher [ctb],
Bradley Evans [ctb],
Agustin Lobo [ctb],
Koen Hufkens [ctb],
Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between MODIS versions 1.1.6 dated 2019-11-27 and 1.1.7 dated 2020-03-30
DESCRIPTION | 12 MD5 | 49 NAMESPACE | 4 NEWS | 10 R/EarthdataLogin.R | 376 ++--- R/checkUtils.R |only R/detectBitInfo.R | 138 +- R/getCollection.R | 10 R/getHdf.R | 816 ++++++------ R/getStruc.R | 454 +++--- R/lpdaacLogin.R | 96 - R/minorFuns.R | 2353 +++++++++++++++++------------------- R/orgStruc.R | 6 R/runGdal.R | 1310 ++++++++++---------- R/runMrt.R | 900 ++++++------- R/sysdata.rda |binary README.md | 2 inst/external/collections.RData |binary inst/external/modland_products.xlsx |binary inst/external/modsnow_products.xlsx |binary man/MODIS-package.Rd | 46 man/getHdf.Rd | 14 man/orgStruc.Rd | 4 man/runMrt.Rd | 2 tests/testthat/test-extractDate.R | 3 tests/testthat/test-getCollection.R | 9 26 files changed, 3267 insertions(+), 3347 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-14 0.4.11
2020-02-28 0.4.8
2019-06-05 0.3.5
2019-02-24 0.3.4
2018-10-23 0.3.2
2018-09-10 0.3.1
2018-08-17 0.2.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-16 3.0.0
2020-02-28 2.0.4
2019-09-19 2.0.2
2019-09-11 2.0.1
2018-09-21 1.1.0
2018-06-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-07 0.2.5-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-22 0.30.2
Title: A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
Description: Provides a consistent API to pull United States
Department of Agriculture census and survey data from the National
Agricultural Statistics Service (NASS) QuickStats service
<https://quickstats.nass.usda.gov>.
Author: Brad Lindblad [aut, cre],
Michael Thomas [ctb],
Alex Mindeman [ctb]
Maintainer: Brad Lindblad <bradley.lindblad@gmail.com>
Diff between tidyUSDA versions 0.2.6 dated 2020-01-25 and 0.2.7 dated 2020-03-30
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 2 ++ R/tidyUSDA.R | 2 +- build/vignette.rds |binary man/allCategory.Rd | 4 +++- man/allCommodity.Rd | 4 +++- man/allCounty.Rd | 4 +++- man/allDataItem.Rd | 4 +++- man/allDomain.Rd | 4 +++- man/allGeogLevel.Rd | 4 +++- man/allGroup.Rd | 4 +++- man/allProgram.Rd | 4 +++- man/allSector.Rd | 4 +++- man/allState.Rd | 4 +++- man/tidyUSDA.Rd | 19 +++++++++++++++++++ 16 files changed, 71 insertions(+), 30 deletions(-)
Title: The Entire Transcript from the Office in Tidy Format
Description: The complete scripts from the American version of
the Office television show in tibble format. Use this package to
analyze and have fun with text from the best series of all time.
Author: Brad Lindblad [aut, cre],
Lucas Graybuck [ctb],
Sean Kent [ctb]
Maintainer: Brad Lindblad <bradley.lindblad@gmail.com>
Diff between schrute versions 0.2.0 dated 2020-03-17 and 0.2.1 dated 2020-03-30
DESCRIPTION | 17 +++++++++++------ MD5 | 22 +++++++++++----------- NEWS.md | 6 +++++- R/schrute.R | 2 +- README.md | 4 ++-- data/theoffice.rda |binary inst/doc/theoffice.R | 8 ++++---- inst/doc/theoffice.Rmd | 8 ++++---- inst/doc/theoffice.html | 44 ++++++++++++++++++++++---------------------- man/schrute.Rd | 19 +++++++++++++++++++ man/theoffice.Rd | 6 ++++-- vignettes/theoffice.Rmd | 8 ++++---- 12 files changed, 87 insertions(+), 57 deletions(-)
Title: Binned Data Analysis
Description: Algorithms developed for binned data analysis,
gene expression data analysis and
measurement error models for ordinal data analysis.
Author: Bin Wang <bwang831@gmail.com>
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between bda versions 14.1.4 dated 2020-02-06 and 14.3.19 dated 2020-03-30
bda-14.1.4/bda/src/Ckernel.c |only bda-14.1.4/bda/src/Fkernel.f |only bda-14.3.19/bda/DESCRIPTION | 10 - bda-14.3.19/bda/MD5 | 50 +++++-- bda-14.3.19/bda/NAMESPACE | 20 ++- bda-14.3.19/bda/R/Pareto.R |only bda-14.3.19/bda/R/TestMediation.R |only bda-14.3.19/bda/R/Zipf.R | 112 ++++++++++------ bda-14.3.19/bda/R/binning.R |only bda-14.3.19/bda/R/bootkde.R |only bda-14.3.19/bda/R/fitFSD.R |only bda-14.3.19/bda/R/fitGBPD.R |only bda-14.3.19/bda/R/fitGLD.R |only bda-14.3.19/bda/R/lpsmooth.R | 212 ++++++++++++++++++-------------- bda-14.3.19/bda/data/EUFirmSize.RData |only bda-14.3.19/bda/data/FSD.RData |only bda-14.3.19/bda/data/datalist | 5 bda-14.3.19/bda/data/ofc.tab.gz |only bda-14.3.19/bda/man/EUFirmSize.Rd |only bda-14.3.19/bda/man/ImportFSD.Rd |only bda-14.3.19/bda/man/Zipf.Rd | 16 +- bda-14.3.19/bda/man/ZipfNorm.Rd | 2 bda-14.3.19/bda/man/binning.Rd |only bda-14.3.19/bda/man/bootKDE.Rd |only bda-14.3.19/bda/man/dataBreastCancer.Rd | 7 + bda-14.3.19/bda/man/dataFSD.Rd |only bda-14.3.19/bda/man/distPareto.Rd |only bda-14.3.19/bda/man/fitFSD.Rd |only bda-14.3.19/bda/man/fitGBPD.Rd |only bda-14.3.19/bda/man/fitPareto.Rd |only bda-14.3.19/bda/man/lpsmooth.Rd | 3 bda-14.3.19/bda/man/medtest.Rd |only bda-14.3.19/bda/man/ofc.Rd |only bda-14.3.19/bda/src/binning.f |only bda-14.3.19/bda/src/bootKDE.f |only bda-14.3.19/bda/src/fitdist.c |only bda-14.3.19/bda/src/init.c | 19 ++ bda-14.3.19/bda/src/kstest.c |only bda-14.3.19/bda/src/lpsmooth.c |only bda-14.3.19/bda/src/oddsratio.c |only bda-14.3.19/bda/src/smoothKDE.f |only 41 files changed, 292 insertions(+), 164 deletions(-)