Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the first and the
second edition of "Numerical Methods and Optimization in Finance"
by M. Gilli, D. Maringer and E. Schumann
(2019, ISBN:978-0128150658). The package provides
implementations of optimisation heuristics
(Differential Evolution, Genetic Algorithms,
Particle Swarm Optimisation, Simulated Annealing and
Threshold Accepting), and other optimisation tools,
such as grid search and greedy search.
There are also functions for the valuation of
financial instruments, such as bonds and options, and
functions that help with stochastic simulations.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 2.0-1 dated 2019-10-20 and 2.1-0 dated 2020-04-06
DESCRIPTION | 8 - MD5 | 44 +++++----- NEWS | 18 ++++ R/market_data.R | 112 ++++++++++++++++++++++----- R/portfolio.R | 141 +++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSqueens.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/qTableEx.pdf |binary inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/unitTests/test_results.txt | 49 ++++++------ inst/unitTests/unitTests_market.R | 4 inst/unitTests/unitTests_portfolio.R | 57 +++++++++++--- man/Shiller.Rd | 2 man/TAopt.Rd | 3 man/minvar.Rd | 28 ++++++ man/mvFrontier.Rd | 45 +++++++++-- man/randomReturns.Rd | 15 ++- 23 files changed, 413 insertions(+), 113 deletions(-)
Title: Estimation and Prediction of Parameters of Various Soil
Hydraulic Property Models
Description: Estimates model parameters of soil hydraulic property functions by inverting measured data. A wide range of hydraulic models, weighting schemes,
global optimization algorithms, Markov chain Monte Carlo samplers, and extended statistical analyses of results are provided.
Prediction of soil hydraulic property model parameters and common soil properties using pedotransfer functions is facilitated.
Parameter estimation is based on identically and independentally distributed (weighted) model residuals, and simple model selection criteria (Hoege, M., Woehling, T., and Nowak, W. (2018) <doi:10.1002/2017WR021902>) can be calculated.
The included models are the van Genuchten-Mualem in its unimodal, bimodal and trimodal form, the the Kosugi 2 parametric-Mualem model, and the Fredlund-Xing model.
All models can be extended to account for non-capillary water storage and conductivity (Weber, T.K.D., Durner, W., Streck, T. and Diamantopoulos, E. (2019) <doi:10.1029/2018WR024584>.
The isothermal vapour conductivity (Saito, H., Simunek, J. and Mohanty, B.P. (2006) <doi:10.2136/vzj2006.0007>) is calculated based on
volumetric air space and a selection of different tortuosity models:
(Grable, A.R., Siemer, E.G. (1968) <doi:10.2136/sssaj1968.03615995003200020011x>, Lai, S.H., Tiedje J.M., Erickson, E. (1976) <doi:10.2136/sssaj1976.03615995004000010006x>,
Moldrup, P., Olesen, T., Rolston, D.E., and Yamaguchi, T. (1997) <doi:10.1097/00010694-199709000-00004>, Moldrup, P., Olesen, T., Yoshikawa, S., Komatsu, T., and Rolston, D.E. (2004) <doi:10.2136/sssaj2004.7500>,
Moldrup, P., Olesen, T., Yoshikawa, S., Komatsu, T., and Rolston, D.E. (2005) <doi:10.1097/01.ss.0000196768.44165.1f>, Millington, R.J., Quirk, J.P. (1961) <doi:10.1039/TF9615701200>,
Penman, H.L. (1940) <doi:10.1017/S0021859600048164>, and Xu, X, Nieber, J.L. Gupta, S.C. (1992) <doi:10.2136/sssaj1992.03615995005600060014x>).
Author: Tobias KD Weber [aut, cre], Efstathios Diamantopoulos [ctb], Melanie Weynants [ctb]
Maintainer: Tobias KD Weber <tobias.weber@uni-hohenheim.de>
Diff between spsh versions 1.0.4 dated 2019-03-24 and 1.1.0 dated 2020-04-06
spsh-1.0.4/spsh/R/ptf.vG2FM.R |only spsh-1.0.4/spsh/man/ptf.vG2FM.Rd |only spsh-1.1.0/spsh/DESCRIPTION | 35 - spsh-1.1.0/spsh/MD5 | 97 ++- spsh-1.1.0/spsh/NAMESPACE | 44 + spsh-1.1.0/spsh/R/Ibeta.R |only spsh-1.1.0/spsh/R/KvapFun.R | 82 ++- spsh-1.1.0/spsh/R/gofFun.r | 63 ++ spsh-1.1.0/spsh/R/inipopFun.R | 42 + spsh-1.1.0/spsh/R/logLikFun.norm.R | 27 - spsh-1.1.0/spsh/R/numMualem.R | 44 + spsh-1.1.0/spsh/R/ptf.cW.R | 20 spsh-1.1.0/spsh/R/ptf.vG2BW.R |only spsh-1.1.0/spsh/R/resFun.R | 67 ++ spsh-1.1.0/spsh/R/shypEstFun.R | 874 ++++++++++++++++++++++------------ spsh-1.1.0/spsh/R/shypFun.01110.R | 41 + spsh-1.1.0/spsh/R/shypFun.01210.R | 44 + spsh-1.1.0/spsh/R/shypFun.01310.R | 54 +- spsh-1.1.0/spsh/R/shypFun.02110.R | 37 + spsh-1.1.0/spsh/R/shypFun.03110.R | 39 + spsh-1.1.0/spsh/R/shypFun.04110.R |only spsh-1.1.0/spsh/R/shypFun.R | 446 +++++++++++------ spsh-1.1.0/spsh/R/sncFun.01110.R |only spsh-1.1.0/spsh/R/sncFun.02110.R |only spsh-1.1.0/spsh/R/sncFun.04110.R |only spsh-1.1.0/spsh/R/sncFun.R | 22 spsh-1.1.0/spsh/R/spsh-package.R |only spsh-1.1.0/spsh/R/transBoundFun.R | 39 + spsh-1.1.0/spsh/R/transFun.R | 25 spsh-1.1.0/spsh/R/weightFun.R | 35 + spsh-1.1.0/spsh/build |only spsh-1.1.0/spsh/inst |only spsh-1.1.0/spsh/man/Ibeta.Rd |only spsh-1.1.0/spsh/man/KvapFun.Rd | 204 +++---- spsh-1.1.0/spsh/man/gofFun.Rd | 165 +++--- spsh-1.1.0/spsh/man/inipopFun.Rd | 112 ++-- spsh-1.1.0/spsh/man/logLikFun.norm.Rd | 92 +-- spsh-1.1.0/spsh/man/numMualem.Rd | 105 +--- spsh-1.1.0/spsh/man/ptf.cW.Rd | 93 +-- spsh-1.1.0/spsh/man/ptf.vG2BW.Rd |only spsh-1.1.0/spsh/man/resFun.Rd | 197 +++---- spsh-1.1.0/spsh/man/shpdata1.Rd | 132 ++--- spsh-1.1.0/spsh/man/shypEstFun.Rd | 702 ++++++++++++--------------- spsh-1.1.0/spsh/man/shypFun.01110.Rd | 96 +-- spsh-1.1.0/spsh/man/shypFun.01210.Rd | 105 ++-- spsh-1.1.0/spsh/man/shypFun.01310.Rd | 127 ++-- spsh-1.1.0/spsh/man/shypFun.02110.Rd | 89 +-- spsh-1.1.0/spsh/man/shypFun.03110.Rd | 94 +-- spsh-1.1.0/spsh/man/shypFun.04110.Rd |only spsh-1.1.0/spsh/man/shypFun.Rd | 321 +++++------- spsh-1.1.0/spsh/man/sncFun.01110.Rd |only spsh-1.1.0/spsh/man/sncFun.02110.Rd |only spsh-1.1.0/spsh/man/sncFun.04110.Rd |only spsh-1.1.0/spsh/man/sncFun.Rd | 88 +-- spsh-1.1.0/spsh/man/spsh-package.Rd | 107 ---- spsh-1.1.0/spsh/man/transBoundFun.Rd | 117 ++-- spsh-1.1.0/spsh/man/transFun.Rd | 97 +-- spsh-1.1.0/spsh/man/weightFun.Rd | 109 +--- 58 files changed, 3080 insertions(+), 2249 deletions(-)
More information about shinyHeatmaply at CRAN
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Title: Draws Diagrams Useful for Checking Latent Scales
Description: A graph
proposed by Rosenbaum is useful
for checking some properties of various
sorts of latent scale, this program generates commands
to obtain the graph using 'dot' from 'graphviz'.
Author: Michael Dewey [aut, cre] (<https://orcid.org/0000-0002-7522-3677>)
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between latdiag versions 0.2-4 dated 2018-05-23 and 0.3 dated 2020-04-06
DESCRIPTION | 19 ++++++++++------ MD5 | 34 ++++++++++++++++++++-------- NAMESPACE | 1 NEWS | 5 ++++ R/draw.latent.R | 32 ++++++++++----------------- R/draw.subgraph.R | 10 +++++--- R/plot.draw.latent.R | 8 +++--- R/print.draw.latent.R | 9 +++++-- build/partial.rdb |binary build/vignette.rds |only inst/REFERENCES.bib |only inst/doc |only man/draw.latent.Rd | 58 +++++++++++++++++++++++++------------------------ man/latdiag-package.Rd | 5 ---- vignettes |only 15 files changed, 102 insertions(+), 79 deletions(-)
Title: Highlight HTML Text and Tables
Description: A tool to format R markdown with CSS ids for HTML output.
The tool may be most helpful for those using markdown to create reproducible
documents. The biggest limitations in formatting is the knowledge of CSS
by the document authors.
Author: Brandon LeBeau [aut, cre] (<https://orcid.org/0000-0002-1265-8761>)
Maintainer: Brandon LeBeau <lebebr01+highlightHTML@gmail.com>
Diff between highlightHTML versions 0.2.1 dated 2018-01-24 and 0.2.4 dated 2020-04-06
DESCRIPTION | 10 - LICENSE | 2 MD5 | 20 +- R/highlightHTMLmaster.r | 42 ---- README.md | 9 - build/vignette.rds |binary inst/doc/the_basics.R | 11 - inst/doc/the_basics.Rmd | 7 inst/doc/the_basics.html | 397 +++++++++++++++++++++++++++++++++++++---------- man/highlight_html.Rd | 52 ------ vignettes/the_basics.Rmd | 7 11 files changed, 362 insertions(+), 195 deletions(-)
Title: Analyzing Ecological Networks
Description: A collection of advanced tools, methods and models specifically designed for analyzing different types of ecological networks - especially antagonistic (food webs, host-parasite), mutualistic (plant-pollinator, plant-fungus, etc) and competitive networks, as well as their variability in time and space. Statistical models are developed to describe and understand the mechanisms that determine species interactions, and to decipher the organization of these (multi-layer) ecological networks.
Author: Stephane Dray [ctb], Catherine Matias [ctb], Vincent Miele [aut, cre], Marc Ohlmann [aut], Wilfried Thuiller [ctb]
Maintainer: Vincent Miele <vincent.miele@univ-lyon1.fr>
Diff between econetwork versions 0.3 dated 2020-03-10 and 0.4 dated 2020-04-06
DESCRIPTION | 13 +++++++------ MD5 | 8 +++++--- NAMESPACE | 11 ++++++++--- R/cpness.R |only man/cpness.Rd |only man/econetwork.Rd | 3 +-- 6 files changed, 21 insertions(+), 14 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. This package includes functions to improve spatial-temporal modelling tasks using 'caret'. It prepares data for Leave-Location-Out and Leave-Time-Out cross-validation which are target-oriented validation strategies for spatial-temporal models. To decrease overfitting and improve model performances, the package implements a forward feature selection that selects suitable predictor variables in view to their contribution to the target-oriented performance.
Author: Hanna Meyer [cre, aut],
Chris Reudenbach [ctb],
Marvin Ludwig [ctb],
Thomas Nauss [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 0.3.1 dated 2018-11-19 and 0.4.0 dated 2020-04-06
DESCRIPTION | 16 MD5 | 36 NAMESPACE | 6 NEWS.md | 7 R/CAST-package.R | 15 R/aoa.R |only R/ffs.R | 71 R/plot_ffs.R | 21 README.md | 11 build/vignette.rds |binary inst/doc/CAST-intro.R | 9 inst/doc/CAST-intro.Rmd | 10 inst/doc/CAST-intro.html | 5162 ++++++++++++++++++++++++++++++++- inst/extdata/predictors_2012-03-25.grd | 6 inst/extdata/predictors_2012-03-25.gri |binary man/CAST.Rd | 11 man/aoa.Rd |only man/ffs.Rd | 19 man/plot_ffs.Rd | 9 vignettes/CAST-intro.Rmd | 10 20 files changed, 5297 insertions(+), 122 deletions(-)
Title: Download House Price Data from Nationwide
Description: Web scraping the <https://www.nationwide.co.uk> for up-to-date data on
house price indices. Download data in tidy format.
Author: Kostas Vasilopoulos [aut, cre]
(<https://orcid.org/0000-0002-9769-6395>)
Maintainer: Kostas Vasilopoulos <k.vasilopoulo@gmail.com>
Diff between nationwider versions 1.1.0 dated 2020-01-12 and 1.1.1 dated 2020-04-06
DESCRIPTION | 10 ++--- MD5 | 32 ++++++++++-------- NAMESPACE | 3 + NEWS.md | 16 +++++++++ R/format.R | 20 ++++++++--- R/get.R | 28 +++++++++------- R/tf.R | 59 +++++++++++++++++++++++++++-------- README.md | 8 ++-- inst/WORDLIST | 4 ++ man/figures/README-plotting-1.png |binary man/ntwd_browse.Rd | 28 ++++++++-------- man/ntwd_meta.Rd | 2 - man/pipe.Rd | 22 ++++++------- tests/testthat/helper.R | 13 +++++++ tests/testthat/test-fail-internals.R |only tests/testthat/test-misc.R |only tests/testthat/test-symbols.R | 21 +++++++----- tests/testthat/test-tidy.R | 3 + 18 files changed, 178 insertions(+), 91 deletions(-)
Title: Geospatial Data Integration
Description: Geospatial data integration framework that merges raster, spatial polygon, and (dynamic) spatial points data into a spatial (panel) data frame at any geographical resolution.
Author: Karsten Donnay and Andrew M. Linke
Maintainer: Karsten Donnay <kdonnay@gmx.net>
Diff between geomerge versions 0.3.1 dated 2018-07-31 and 0.3.2 dated 2020-04-06
DESCRIPTION | 8 - MD5 | 16 +- NAMESPACE | 2 NEWS | 6 R/geomerge.R | 9 - R/geomerge.assign.R | 2 R/geomerge.merge.R | 2 R/geomerge.neighbor.R | 2 README.md | 359 ++++++++++++++++++++++++++++++++++++++++++++++---- 9 files changed, 362 insertions(+), 44 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Kirill Müller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.9-0 dated 2020-03-24 and 0.9-1 dated 2020-04-06
DESCRIPTION | 8 MD5 | 114 - NEWS.md | 12 R/RcppExports.R | 8 R/crs.R | 6 R/m_range.R | 2 R/sfc.R | 6 R/tidyverse-vctrs.R | 8 R/transform.R | 6 inst/doc/sf1.html | 14 inst/doc/sf2.html | 6 inst/doc/sf4.html | 2 inst/doc/sf5.html | 16 inst/doc/sf6.html | 2 man/db_drivers.Rd | 4 man/extension_map.Rd | 4 man/prefix_map.Rd | 4 man/sf_project.Rd | 11 man/st_agr.Rd | 4 man/st_bbox.Rd | 4 man/st_crs.Rd | 10 man/st_geometry_type.Rd | 4 man/st_m_range.Rd | 4 man/st_z_range.Rd | 4 man/tidyverse.Rd | 34 src/RcppExports.cpp | 9 src/gdal.cpp | 14 src/gdal_utils.cpp | 6 src/proj.cpp | 8 src/stars.cpp | 2 src/zm_range.cpp | 99 + src/zm_range.h | 10 tests/aggregate.Rout.save | 226 +-- tests/cast.Rout.save | 480 +++--- tests/crs.Rout.save | 200 +- tests/dist.Rout.save | 222 +-- tests/dplyr.Rout.save | 572 ++++---- tests/empty.Rout.save | 576 ++++---- tests/gdal_geom.Rout.save | 670 ++++----- tests/geos.Rout.save | 1156 ++++++++-------- tests/graticule.Rout.save | 150 +- tests/grid.Rout.save | 158 +- tests/maps.Rout.save | 248 +-- tests/plot.Rout.save | 344 ++-- tests/read.Rout.save | 736 +++++----- tests/roundtrip.Rout.save | 356 ++--- tests/sample.Rout.save | 112 - tests/sfc.Rout.save | 2254 ++++++++++++++++---------------- tests/sfg.Rout.save | 156 +- tests/spatstat.Rout.save | 610 ++++---- tests/stars.Rout.save | 462 +++--- tests/testthat.Rout.save | 32 tests/testthat/test_crs.R | 2 tests/testthat/test_postgis_RPostgres.R | 1 tests/testthat/test_sp.R | 4 tests/testthat/test_zm_range.R | 4 tests/units.Rout.save | 134 - tests/wkb.Rout.save | 204 +- 58 files changed, 5317 insertions(+), 5197 deletions(-)
Title: Feature Selection for Multivariate Time Series
Description: Implements feature selection routines for multivariate time series (MTS).
The list of implemented algorithms includes:
own lags (independent MTS components),
distance-based (using external structure, e.g. Pfeifer and Deutsch (1980) <doi:10.2307/1268381>),
cross-correlation (see Schelter et al. (2006, ISBN:9783527406234)),
graphical LASSO (see Haworth and Cheng (2014) <https://www.gla.ac.uk/media/Media_401739_smxx.pdf>),
random forest (see Pavlyuk (2020) "Random Forest Variable Selection for Sparse Vector Autoregressive Models" in Contributions to Statistics, in production),
least angle regression (see Gelper and Croux (2008) <https://lirias.kuleuven.be/retrieve/16024>),
mutual information (see Schelter et al. (2006, ISBN:9783527406234), Liu et al. (2016) <doi:10.1109/ChiCC.2016.7554480>),
and partial spectral coherence (see Davis et al.(2016) <doi:10.1080/10618600.2015.1092978>).
In addition, the package implements functions for ensemble feature selection (using feature ranking and majority voting).
The package is implemented within Dmitry Pavlyuk's research project No. 1.1.1.2/VIAA/1/16/112 "Spatiotemporal urban traffic modelling using big data".
Author: Dmitry Pavlyuk [aut, cre] (<https://orcid.org/0000-0003-3710-9678>)
Maintainer: Dmitry Pavlyuk <Dmitry.Pavlyuk@tsi.lv>
Diff between fsMTS versions 0.1.4 dated 2020-03-25 and 0.1.5 dated 2020-04-06
DESCRIPTION | 10 MD5 | 28 R/fsMTS.R | 6 R/fsPSC.R | 43 R/utils.R | 43 inst/doc/simulated.R | 10 inst/doc/simulated.Rmd | 10 inst/doc/simulated.html | 163 +-- inst/doc/traffic.R | 6 inst/doc/traffic.Rmd | 6 inst/doc/traffic.html | 2093 +++++++++++++++++++++++++----------------------- man/fsMTS.Rd | 4 man/fsSimilarity.Rd | 14 vignettes/simulated.Rmd | 10 vignettes/traffic.Rmd | 6 15 files changed, 1271 insertions(+), 1181 deletions(-)
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types of machine learning models in R. Aside from some standard model-
specific variable importance measures, this package also provides model-
agnostic approaches that can be applied to any supervised learning algorithm.
These include 1) an efficient permutation-based variable importance measure,
2) variable importance based on Shapley values (Strumbelj and Kononenko,
2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based
approach described in Greenwell et al. (2018) <arXiv:1805.04755>. A
variance-based method for quantifying the relative strength of interaction
effects is also included (see the previous reference for details).
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>),
Brad Boehmke [aut] (<https://orcid.org/0000-0002-3611-8516>),
Bernie Gray [aut] (<https://orcid.org/0000-0001-9190-6032>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.2.1 dated 2020-01-20 and 0.2.2 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 10 ++++++++-- R/vi_model.R | 29 ++++++++++++++--------------- 4 files changed, 29 insertions(+), 24 deletions(-)
Title: Clinical Trial Designs in 'rstan'
Description: A collection of clinical trial designs and methods, implemented in
'rstan' and R, including: the Continual Reassessment Method by O'Quigley et
al. (1990) <doi:10.2307/2531628>; EffTox by Thall & Cook (2004)
<doi:10.1111/j.0006-341X.2004.00218.x>; and the Augmented Binary method by
Wason & Seaman (2013) <doi:10.1002/sim.5867>; and more. We provide functions
to aid model-fitting and analysis. The 'rstan' implementations may also
serve as a cookbook to anyone looking to extend or embellish these models.
We hope that this package encourages the use of Bayesian methods in clinical
trials. There is a preponderance of early phase trial designs because this
is where Bayesian methods are used most. If there is a method you would like
implemented, please get in touch.
Author: Kristian Brock [aut, cre] (<https://orcid.org/0000-0002-3921-0166>),
Trustees of Columbia University [cph]
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between trialr versions 0.1.3 dated 2020-01-08 and 0.1.4 dated 2020-04-06
DESCRIPTION | 18 MD5 | 90 NEWS.md | 5 R/efftox_process.R | 17 build/vignette.rds |binary inst/doc/BEBOP.html | 35 inst/doc/CRM-pathways.html | 1678 +--------- inst/doc/CRM-visualisation.html | 33 inst/doc/CRM.html | 47 inst/doc/EffTox.html | 51 inst/doc/HierarchicalBayesianResponse.html | 263 - inst/doc/LevyCaseStudy.html | 45 inst/doc/TITE-CRM.html | 9 man/binary_prob_success.Rd | 12 man/careful_escalation.Rd | 9 man/crm_dtps.Rd | 15 man/crm_fit-class.Rd | 16 man/crm_params-class.Rd | 14 man/crm_path_analysis.Rd | 3 man/crm_prior_beliefs.Rd | 17 man/dose_finding_fit-class.Rd | 13 man/dose_finding_path_node-class.Rd | 11 man/efftox_contour_plot.Rd | 11 man/efftox_dtps.Rd | 11 man/efftox_fit-class.Rd | 23 man/efftox_params-class.Rd | 27 man/efftox_simulate.Rd | 11 man/peps2_get_data.Rd | 25 man/peps2_process.Rd | 9 man/predict.augbin_2t_1a_fit.Rd | 13 man/print.augbin_fit.Rd | 8 man/prior_predictive_augbin_2t_1a.Rd | 24 man/prob_success.Rd | 13 man/stan_augbin.Rd | 10 man/stan_crm.Rd | 22 man/stan_efftox.Rd | 33 man/stan_hierarchical_response_thall.Rd | 11 man/stan_peps2.Rd | 22 man/trialr_simulate.Rd | 11 src/stan_files/EffTox.stan | 4 tests/testthat/test_stan_augbin.R | 127 tests/testthat/test_stan_crm.R | 4 vignettes/EffTox_cache/html/run_sims_f82b60090eba4ebe42c302621d520c5f.RData |binary vignettes/EffTox_cache/html/run_sims_f82b60090eba4ebe42c302621d520c5f.rdx |binary vignettes/EffTox_files/figure-html/unnamed-chunk-5-1.png |binary vignettes/EffTox_files/figure-html/unnamed-chunk-6-1.png |binary 46 files changed, 1003 insertions(+), 1817 deletions(-)
Title: Joint Discretization of Data on a Grid that Preserves Clusters
Description: Discretize multivariate continuous data using a grid
that captures the joint distribution via preserving clusters in
the original data. Joint grid discretization is applicable as a
data transformation step before using other methods to infer
association, function, or causality without assuming a
parametric model.
Author: Jiandong Wang [aut],
Sajal Kumar [aut] (<https://orcid.org/0000-0003-0930-1582>),
Joe Song [aut, cre] (<https://orcid.org/0000-0002-6883-6547>)
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between GridOnClusters versions 0.0.6 dated 2020-03-27 and 0.0.7 dated 2020-04-06
DESCRIPTION | 10 +-- MD5 | 24 ++++----- NEWS.md | 15 +++++ R/discretize_jointly.R | 14 ++--- README.md | 13 ++--- inst/doc/Examples.R | 8 +-- inst/doc/Examples.Rmd | 8 +-- inst/doc/Examples.html | 34 ++++++------- man/discretize.jointly.Rd | 14 ++--- src/Clusters.cpp | 16 +----- src/Joint_Grid.cpp | 61 +++++++++-------------- tests/testthat/test-GridOnClusters.R | 90 +++++++++++++++++------------------ vignettes/Examples.Rmd | 8 +-- 13 files changed, 150 insertions(+), 165 deletions(-)
More information about GridOnClusters at CRAN
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More information about ChannelAttribution at CRAN
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More information about BoutrosLab.plotting.general at CRAN
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Title: Creates Safety Results Summary in XML to Upload to EudraCT
Description: The remit of the European Clinical Trials Data Base (EudraCT <https://eudract.ema.europa.eu/> ) is to provide open access to summaries of all registered clinical trial results; thus aiming to prevent non-reporting of negative results and provide open-access to results to inform future research. The amount of information required and the format of the results, however, imposes a large extra workload at the end of studies on clinical trial units. In particular, the adverse-event-reporting component requires entering: each unique combination of treatment group and safety event; for every such event above, a further 4 pieces of information (body system, number of occurrences, number of subjects, number exposed) for non-serious events, plus an extra three pieces of data for serious adverse events (numbers of causally related events, deaths, causally related deaths). This package prepares the required statistics needed by EudraCT and formats them into the precise requirements to directly upload an XML file into the web portal, with no further data entry by hand.
Author: Simon Bond [cre],
Beatrice Pantaleo [aut]
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Diff between eudract versions 0.9.1 dated 2020-02-13 and 0.9.2 dated 2020-04-06
DESCRIPTION | 10 ++-- MD5 | 30 +++++++------- NAMESPACE | 2 NEWS.md | 5 ++ R/safety_summary.R | 1 inst/doc/eudract.html | 8 +-- man/append_xml.Rd | 22 +++++----- man/create.safety_summary.Rd | 41 +++++++++---------- man/df_to_char.Rd | 28 ++++++------- man/eudract_convert.Rd | 82 +++++++++++++++++++------------------- man/print.safety_summary.Rd | 32 +++++++-------- man/safety.Rd | 60 ++++++++++++++-------------- man/safety_summary.Rd | 91 ++++++++++++++++++++++--------------------- man/simple_safety_xml.Rd | 69 +++++++++++++++++--------------- man/soc_code.Rd | 42 +++++++++---------- tests/testthat/test_bea.R | 8 +-- 16 files changed, 271 insertions(+), 260 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <http://cyclestreets.net/>;
calculation of route segment attributes such as bearing and aggregate flow;
and 'travel watershed' analysis.
See Lovelace and Ellison (2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.5.1 dated 2020-03-01 and 0.5.2 dated 2020-04-06
stplanr-0.5.1/stplanr/R/depreciated.R |only stplanr-0.5.1/stplanr/R/gtfs.R |only stplanr-0.5.2/stplanr/DESCRIPTION | 8 stplanr-0.5.2/stplanr/MD5 | 87 ++++----- stplanr-0.5.2/stplanr/NEWS.md | 11 + stplanr-0.5.2/stplanr/R/SpatialLinesNetwork.R | 5 stplanr-0.5.2/stplanr/R/deprecated.R |only stplanr-0.5.2/stplanr/R/linefuns.R | 10 - stplanr-0.5.2/stplanr/R/od-funs.R | 21 +- stplanr-0.5.2/stplanr/R/oneway.R | 151 ---------------- stplanr-0.5.2/stplanr/R/route.R | 22 +- stplanr-0.5.2/stplanr/R/stplanr-package.R | 2 stplanr-0.5.2/stplanr/R/toptail.R | 2 stplanr-0.5.2/stplanr/build/vignette.rds |binary stplanr-0.5.2/stplanr/inst/doc/stplanr-od.html | 36 ++- stplanr-0.5.2/stplanr/inst/doc/stplanr-paper.html | 30 ++- stplanr-0.5.2/stplanr/inst/doc/stplanr-route-nets.R | 14 - stplanr-0.5.2/stplanr/inst/doc/stplanr-route-nets.Rmd | 20 +- stplanr-0.5.2/stplanr/inst/doc/stplanr-route-nets.html | 65 ++++-- stplanr-0.5.2/stplanr/inst/doc/stplanr-routing.html | 26 ++ stplanr-0.5.2/stplanr/inst/doc/stplanr.html | 53 +++-- stplanr-0.5.2/stplanr/man/SpatialLinesNetwork.Rd | 2 stplanr-0.5.2/stplanr/man/angle_diff.Rd | 4 stplanr-0.5.2/stplanr/man/ca_local.Rd | 4 stplanr-0.5.2/stplanr/man/cents.Rd | 4 stplanr-0.5.2/stplanr/man/destination_zones.Rd | 4 stplanr-0.5.2/stplanr/man/flow.Rd | 4 stplanr-0.5.2/stplanr/man/flow_dests.Rd | 4 stplanr-0.5.2/stplanr/man/flowlines.Rd | 4 stplanr-0.5.2/stplanr/man/gtfs2sldf.Rd | 2 stplanr-0.5.2/stplanr/man/l_poly.Rd | 4 stplanr-0.5.2/stplanr/man/line2route.Rd | 7 stplanr-0.5.2/stplanr/man/od_data_sample.Rd | 4 stplanr-0.5.2/stplanr/man/od_oneway.Rd | 9 stplanr-0.5.2/stplanr/man/onewayid.Rd | 6 stplanr-0.5.2/stplanr/man/osm_net_example.Rd | 4 stplanr-0.5.2/stplanr/man/rnet_cycleway_intersection.Rd | 4 stplanr-0.5.2/stplanr/man/rnet_overpass.Rd | 4 stplanr-0.5.2/stplanr/man/rnet_roundabout.Rd | 4 stplanr-0.5.2/stplanr/man/route.Rd | 13 + stplanr-0.5.2/stplanr/man/route_network.Rd | 4 stplanr-0.5.2/stplanr/man/routes_fast.Rd | 4 stplanr-0.5.2/stplanr/man/routes_slow.Rd | 4 stplanr-0.5.2/stplanr/man/stplanr-deprecated.Rd | 2 stplanr-0.5.2/stplanr/man/sum_network_routes.Rd | 3 stplanr-0.5.2/stplanr/vignettes/stplanr-route-nets.Rmd | 20 +- 46 files changed, 345 insertions(+), 346 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep').
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (<https://orcid.org/0000-0003-2392-6140>),
Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Mark Monmonier [ctb] (author of the state.vbm dataset),
Greg Snow [ctb] (author of the state.vbm dataset)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.3.3 dated 2020-02-11 and 0.3.5 dated 2020-04-06
spData-0.3.3/spData/data/house.RData |only spData-0.3.5/spData/DESCRIPTION | 8 - spData-0.3.5/spData/MD5 | 114 +++++++++++----------- spData-0.3.5/spData/R/urban_agglomerations.R | 20 ++- spData-0.3.5/spData/README.md | 107 +++++++++++--------- spData-0.3.5/spData/data/SplashDams.rda |binary spData-0.3.5/spData/data/aggregating_zones.rda |binary spData-0.3.5/spData/data/alaska.rda |binary spData-0.3.5/spData/data/congruent.rda |binary spData-0.3.5/spData/data/cycle_hire.rda |binary spData-0.3.5/spData/data/cycle_hire_osm.rda |binary spData-0.3.5/spData/data/datalist | 4 spData-0.3.5/spData/data/elect80.rda |binary spData-0.3.5/spData/data/hawaii.rda |binary spData-0.3.5/spData/data/house.rda |only spData-0.3.5/spData/data/incongruent.rda |binary spData-0.3.5/spData/data/lnd.rda |binary spData-0.3.5/spData/data/nz.rda |binary spData-0.3.5/spData/data/nz_height.rda |binary spData-0.3.5/spData/data/seine.rda |binary spData-0.3.5/spData/data/state.vbm.rda |binary spData-0.3.5/spData/data/urban_agglomerations.rda |binary spData-0.3.5/spData/data/us_states.rda |binary spData-0.3.5/spData/data/world.rda |binary spData-0.3.5/spData/man/SplashDams.Rd | 6 - spData-0.3.5/spData/man/afcon.Rd | 6 - spData-0.3.5/spData/man/alaska.Rd | 6 - spData-0.3.5/spData/man/auckland.Rd | 6 - spData-0.3.5/spData/man/baltimore.Rd | 6 - spData-0.3.5/spData/man/boston.Rd | 6 - spData-0.3.5/spData/man/coffee_data.Rd | 6 - spData-0.3.5/spData/man/columbus.Rd | 6 - spData-0.3.5/spData/man/congruent.Rd | 6 - spData-0.3.5/spData/man/cycle_hire.Rd | 6 - spData-0.3.5/spData/man/cycle_hire_osm.Rd | 6 - spData-0.3.5/spData/man/eire.Rd | 6 - spData-0.3.5/spData/man/elect80.Rd | 6 - spData-0.3.5/spData/man/elev.Rd | 4 spData-0.3.5/spData/man/getisord.Rd | 6 - spData-0.3.5/spData/man/grain.Rd | 4 spData-0.3.5/spData/man/hawaii.Rd | 6 - spData-0.3.5/spData/man/hopkins.Rd | 4 spData-0.3.5/spData/man/house.Rd | 6 - spData-0.3.5/spData/man/huddersfield.Rd | 6 - spData-0.3.5/spData/man/jenks71.Rd | 6 - spData-0.3.5/spData/man/lnd.Rd | 6 - spData-0.3.5/spData/man/nc.sids.Rd | 6 - spData-0.3.5/spData/man/nydata.Rd | 6 - spData-0.3.5/spData/man/nz.Rd | 6 - spData-0.3.5/spData/man/nz_height.Rd | 6 - spData-0.3.5/spData/man/seine.Rd | 6 - spData-0.3.5/spData/man/state.vbm.Rd | 4 spData-0.3.5/spData/man/urban_agglomerations.Rd | 26 +++-- spData-0.3.5/spData/man/us_states.Rd | 6 - spData-0.3.5/spData/man/us_states_df.Rd | 6 - spData-0.3.5/spData/man/used.cars.Rd | 6 - spData-0.3.5/spData/man/wheat.Rd | 6 - spData-0.3.5/spData/man/world.Rd | 6 - spData-0.3.5/spData/man/worldbank_df.Rd | 6 - 59 files changed, 283 insertions(+), 192 deletions(-)
Title: Get Network Representation of an R Package
Description: Tools from the domain of graph theory can be used to quantify the complexity
and vulnerability to failure of a software package. That is the guiding philosophy
of this package. 'pkgnet' provides tools to analyze the dependencies between functions
in an R package and between its imported packages. See the pkgnet website for vignettes
and other supplementary information.
Author: Brian Burns [aut, cre],
James Lamb [aut],
Jay Qi [aut]
Maintainer: Brian Burns <brian.burns.opensource@gmail.com>
Diff between pkgnet versions 0.4.0 dated 2019-04-05 and 0.4.1 dated 2020-04-06
pkgnet-0.4.0/pkgnet/build |only pkgnet-0.4.0/pkgnet/inst/doc |only pkgnet-0.4.0/pkgnet/vignettes |only pkgnet-0.4.1/pkgnet/DESCRIPTION | 29 pkgnet-0.4.1/pkgnet/LICENSE | 6 pkgnet-0.4.1/pkgnet/MD5 | 238 - pkgnet-0.4.1/pkgnet/NAMESPACE | 142 - pkgnet-0.4.1/pkgnet/NEWS.md | 170 - pkgnet-0.4.1/pkgnet/R/AbstractGraphReporter.R | 917 +++--- pkgnet-0.4.1/pkgnet/R/AbstractPackageReporter.R | 376 +- pkgnet-0.4.1/pkgnet/R/CreatePackageReport.R | 484 ++- pkgnet-0.4.1/pkgnet/R/CreatePackageVignette.R | 307 +- pkgnet-0.4.1/pkgnet/R/DefaultReporters.R | 27 pkgnet-0.4.1/pkgnet/R/DependencyReporter.R | 467 +-- pkgnet-0.4.1/pkgnet/R/FunctionReporter.R | 1352 +++++----- pkgnet-0.4.1/pkgnet/R/GraphClasses.R | 1217 ++++----- pkgnet-0.4.1/pkgnet/R/InheritanceReporter.R | 437 +-- pkgnet-0.4.1/pkgnet/R/SummaryReporter.R | 105 pkgnet-0.4.1/pkgnet/R/logging.R | 84 pkgnet-0.4.1/pkgnet/R/pkgnet.R | 196 - pkgnet-0.4.1/pkgnet/R/testing_utils.R | 209 - pkgnet-0.4.1/pkgnet/README.md | 106 pkgnet-0.4.1/pkgnet/inst/baseballstats/DESCRIPTION | 40 pkgnet-0.4.1/pkgnet/inst/baseballstats/LICENSE | 2 pkgnet-0.4.1/pkgnet/inst/baseballstats/NAMESPACE | 14 pkgnet-0.4.1/pkgnet/inst/baseballstats/R/batting_statistics.R | 198 - pkgnet-0.4.1/pkgnet/inst/baseballstats/man/at_bats.Rd | 46 pkgnet-0.4.1/pkgnet/inst/baseballstats/man/batting_avg.Rd | 46 pkgnet-0.4.1/pkgnet/inst/baseballstats/man/on_base_pct.Rd | 46 pkgnet-0.4.1/pkgnet/inst/baseballstats/man/ops.Rd | 48 pkgnet-0.4.1/pkgnet/inst/baseballstats/man/slugging_avg.Rd | 46 pkgnet-0.4.1/pkgnet/inst/baseballstats/tests/testthat.R | 24 pkgnet-0.4.1/pkgnet/inst/baseballstats/tests/testthat/test-batting_statistics.R | 10 pkgnet-0.4.1/pkgnet/inst/milne/DESCRIPTION | 36 pkgnet-0.4.1/pkgnet/inst/milne/LICENSE | 2 pkgnet-0.4.1/pkgnet/inst/milne/NAMESPACE | 26 pkgnet-0.4.1/pkgnet/inst/milne/R/Swing_Song.R | 38 pkgnet-0.4.1/pkgnet/inst/milne/R/The_End.R | 274 +- pkgnet-0.4.1/pkgnet/inst/milne/R/The_Friend.R | 90 pkgnet-0.4.1/pkgnet/inst/milne/man/Five.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/man/Four.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/man/One.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/man/PoohAnswer.Rd | 30 pkgnet-0.4.1/pkgnet/inst/milne/man/RightAnswer.Rd | 28 pkgnet-0.4.1/pkgnet/inst/milne/man/Six.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/man/Three.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/man/Two.Rd | 38 pkgnet-0.4.1/pkgnet/inst/milne/tests/testthat.R | 24 pkgnet-0.4.1/pkgnet/inst/milne/tests/testthat/test_The_End.R | 38 pkgnet-0.4.1/pkgnet/inst/package_report/footer.html | 2 pkgnet-0.4.1/pkgnet/inst/package_report/header.html | 6 pkgnet-0.4.1/pkgnet/inst/package_report/package_dependency_reporter.Rmd | 52 pkgnet-0.4.1/pkgnet/inst/package_report/package_function_reporter.Rmd | 52 pkgnet-0.4.1/pkgnet/inst/package_report/package_inheritance_reporter.Rmd | 98 pkgnet-0.4.1/pkgnet/inst/package_report/package_report.Rmd | 106 pkgnet-0.4.1/pkgnet/inst/package_report/package_summary_reporter.Rmd | 20 pkgnet-0.4.1/pkgnet/inst/package_report/package_vignette_template.Rmd | 122 pkgnet-0.4.1/pkgnet/inst/sartre/DESCRIPTION | 28 pkgnet-0.4.1/pkgnet/inst/sartre/LICENSE | 2 pkgnet-0.4.1/pkgnet/inst/sartre/NAMESPACE | 6 pkgnet-0.4.1/pkgnet/inst/sartre/R/Being_and_Nothingness.R | 42 pkgnet-0.4.1/pkgnet/inst/sartre/man/somethingAboutNothing.Rd | 34 pkgnet-0.4.1/pkgnet/inst/sartre/tests/testthat.R | 24 pkgnet-0.4.1/pkgnet/inst/sartre/tests/testthat/test-Being_and_Nothingness.R | 10 pkgnet-0.4.1/pkgnet/inst/silverstein |only pkgnet-0.4.1/pkgnet/man/CreatePackageReport.Rd | 60 pkgnet-0.4.1/pkgnet/man/CreatePackageVignette.Rd | 65 pkgnet-0.4.1/pkgnet/man/DefaultReporters.Rd | 31 pkgnet-0.4.1/pkgnet/man/DependencyReporter.Rd | 373 +- pkgnet-0.4.1/pkgnet/man/DirectedGraph.Rd | 313 +- pkgnet-0.4.1/pkgnet/man/DirectedGraphMeasures.Rd | 169 - pkgnet-0.4.1/pkgnet/man/FunctionReporter.Rd | 433 +-- pkgnet-0.4.1/pkgnet/man/GraphClasses.Rd | 263 - pkgnet-0.4.1/pkgnet/man/InheritanceReporter.Rd | 405 +- pkgnet-0.4.1/pkgnet/man/NetworkReporters.Rd | 131 pkgnet-0.4.1/pkgnet/man/PackageReport.Rd |only pkgnet-0.4.1/pkgnet/man/PackageReporters.Rd | 233 - pkgnet-0.4.1/pkgnet/man/SummaryReporter.Rd | 246 - pkgnet-0.4.1/pkgnet/man/figures |only pkgnet-0.4.1/pkgnet/man/pkgnet-package.Rd | 187 - pkgnet-0.4.1/pkgnet/tests/testthat.R | 206 - pkgnet-0.4.1/pkgnet/tests/testthat/setup-logger.R | 32 pkgnet-0.4.1/pkgnet/tests/testthat/setup-setTestEnv.R | 60 pkgnet-0.4.1/pkgnet/tests/testthat/teardown-logger.R | 14 pkgnet-0.4.1/pkgnet/tests/testthat/teardown-setTestEnv.R | 44 pkgnet-0.4.1/pkgnet/tests/testthat/test-0-test-package-installation.R | 36 pkgnet-0.4.1/pkgnet/tests/testthat/test-AbstractGraphReporter.R | 183 - pkgnet-0.4.1/pkgnet/tests/testthat/test-AbstractPackageReporter.R | 162 - pkgnet-0.4.1/pkgnet/tests/testthat/test-CreatePackageReport.R | 273 +- pkgnet-0.4.1/pkgnet/tests/testthat/test-CreatePackageVignette.R | 446 +-- pkgnet-0.4.1/pkgnet/tests/testthat/test-DependencyReporter-class.R | 308 +- pkgnet-0.4.1/pkgnet/tests/testthat/test-DependencyReporter-network.R | 50 pkgnet-0.4.1/pkgnet/tests/testthat/test-DirectedGraph.R | 414 +-- pkgnet-0.4.1/pkgnet/tests/testthat/test-FunctionReporter-class.R | 566 ++-- pkgnet-0.4.1/pkgnet/tests/testthat/test-FunctionReporter-network.R | 82 pkgnet-0.4.1/pkgnet/tests/testthat/test-InheritanceReporter-class.R | 308 +- pkgnet-0.4.1/pkgnet/tests/testthat/test-InheritanceReporter-network.R | 48 pkgnet-0.4.1/pkgnet/tests/testthat/test-PackageReport.R |only pkgnet-0.4.1/pkgnet/tests/testthat/test-cran-true.R | 28 pkgnet-0.4.1/pkgnet/tests/testthat/test-logging.R | 52 pkgnet-0.4.1/pkgnet/tests/testthat/test-plotting.R | 98 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/baseballstats_dependency_edges.csv | 20 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/baseballstats_dependency_nodes.csv | 16 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/baseballstats_function_edges.csv | 10 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/baseballstats_function_nodes.csv | 12 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/graph_measures_baseballstats_DependencyReporter.csv | 12 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/graph_measures_baseballstats_FunctionReporter.csv | 12 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/graph_measures_milne_InheritanceReporter.csv | 12 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/milne_function_edges.csv | 18 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/milne_function_nodes.csv | 36 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/milne_inheritance_edges.csv | 24 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/milne_inheritance_nodes.csv | 30 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/node_measures_baseballstats_DependencyReporter.csv | 16 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/node_measures_baseballstats_FunctionReporter.csv | 12 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/node_measures_milne_InheritanceReporter.csv | 30 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/sartre_function_edges.csv | 2 pkgnet-0.4.1/pkgnet/tests/testthat/testdata/sartre_function_nodes.csv | 4 117 files changed, 7864 insertions(+), 7528 deletions(-)
Title: Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Description: Learning, manipulation and evaluation of mixtures of truncated basis functions
(MoTBFs), which include mixtures of polynomials (MOPs) and mixtures of truncated
exponentials (MTEs). MoTBFs are a flexible framework for modelling hybrid Bayesian
networks (I. Pérez-Bernabé, A. Salmerón, H. Langseth (2015) <doi:10.1007/978-3-319-20807-7_36>; H. Langseth, T.D. Nielsen, I. Pérez-Bernabé, A. Salmerón (2014) <doi:10.1016/j.ijar.2013.09.012>; I. Pérez-Bernabé, A. Fernández, R. Rumí, A. Salmerón (2016) <doi:10.1007/s10618-015-0429-7>). The package provides functionality for learning univariate, multivariate and
conditional densities, with the possibility of incorporating prior knowledge. Structural
learning of hybrid Bayesian networks is also provided. A set of useful tools is provided,
including plotting, printing and likelihood evaluation. This package makes use of S3
objects, with two new classes called 'motbf' and 'jointmotbf'.
Author: Inmaculada Pérez-Bernabé, Antonio Salmerón, Thomas D. Nielsen, Ana D. Maldonado
Maintainer: Ana D. Maldonado <ana.d.maldonado@ual.es>
Diff between MoTBFs versions 1.2 dated 2020-01-14 and 1.3 dated 2020-04-06
DESCRIPTION | 8 +-- MD5 | 34 ++++++++-------- R/Inference.R | 23 ++++++++--- R/LearningBN.R | 8 +-- R/joint.R | 85 +++++++++++++---------------------------- R/motbf.R | 4 - R/priorKnowledge.R | 14 ++---- man/Class-JointMoTBF.Rd | 4 - man/Class-MoTBF.Rd | 4 - man/coef.jointmotbf.Rd | 20 ++------- man/generateNormalPriorData.Rd | 12 +---- man/jointmotbf.learning.Rd | 23 ++--------- man/marginalJointMoTBF.Rd | 13 +----- man/nVariables.Rd | 22 ++-------- man/plot.jointmotbf.Rd | 6 +- man/summary.jointmotbf.Rd | 4 - man/summary.motbf.Rd | 4 - man/univMoTBF.Rd | 4 - 18 files changed, 113 insertions(+), 179 deletions(-)
Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans:
fast and user friendly parsing of date-time data, extraction and
updating of components of a date-time (years, months, days, hours,
minutes, and seconds), algebraic manipulation on date-time and
time-span objects. The 'lubridate' package has a consistent and
memorable syntax that makes working with dates easy and fun. Parts of
the 'CCTZ' source code, released under the Apache 2.0 License, are
included in this package. See <https://github.com/google/cctz> for
more details.
Author: Vitalie Spinu [aut, cre],
Garrett Grolemund [aut],
Hadley Wickham [aut],
Ian Lyttle [ctb],
Imanuel Constigan [ctb],
Jason Law [ctb],
Doug Mitarotonda [ctb],
Joseph Larmarange [ctb],
Jonathan Boiser [ctb],
Chel Hee Lee [ctb]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between lubridate versions 1.7.4 dated 2018-04-11 and 1.7.8 dated 2020-04-06
lubridate-1.7.4/lubridate/man/is.Date.Rd |only lubridate-1.7.4/lubridate/man/is.POSIXt.Rd |only lubridate-1.7.4/lubridate/man/today.Rd |only lubridate-1.7.4/lubridate/tests/testthat/test-timezones.R |only lubridate-1.7.8/lubridate/DESCRIPTION | 98 - lubridate-1.7.8/lubridate/MD5 | 205 +- lubridate-1.7.8/lubridate/NAMESPACE | 42 lubridate-1.7.8/lubridate/NEWS.md | 190 +- lubridate-1.7.8/lubridate/R/Dates.r | 23 lubridate-1.7.8/lubridate/R/POSIXt.r | 30 lubridate-1.7.8/lubridate/R/accessors-date.R | 5 lubridate-1.7.8/lubridate/R/accessors-day.r | 9 lubridate-1.7.8/lubridate/R/accessors-month.r | 4 lubridate-1.7.8/lubridate/R/accessors-quarter.r | 3 lubridate-1.7.8/lubridate/R/accessors-tz.r | 153 + lubridate-1.7.8/lubridate/R/accessors-week.r | 4 lubridate-1.7.8/lubridate/R/accessors-year.r | 4 lubridate-1.7.8/lubridate/R/coercion.r | 21 lubridate-1.7.8/lubridate/R/cyclic_encoding.r |only lubridate-1.7.8/lubridate/R/deprecated.r | 178 -- lubridate-1.7.8/lubridate/R/difftimes.r | 28 lubridate-1.7.8/lubridate/R/durations.r | 107 - lubridate-1.7.8/lubridate/R/format_ISO8601.r |only lubridate-1.7.8/lubridate/R/guess.r | 32 lubridate-1.7.8/lubridate/R/instants.r | 24 lubridate-1.7.8/lubridate/R/intervals.r | 105 - lubridate-1.7.8/lubridate/R/leap-years.r | 10 lubridate-1.7.8/lubridate/R/ops-addition.r | 16 lubridate-1.7.8/lubridate/R/ops-division.r | 24 lubridate-1.7.8/lubridate/R/ops-integer-division.r | 24 lubridate-1.7.8/lubridate/R/ops-m+.r | 24 lubridate-1.7.8/lubridate/R/ops-multiplication.r | 2 lubridate-1.7.8/lubridate/R/package.r | 7 lubridate-1.7.8/lubridate/R/parse.r | 229 +- lubridate-1.7.8/lubridate/R/periods.r | 177 +- lubridate-1.7.8/lubridate/R/round.r | 97 - lubridate-1.7.8/lubridate/R/stamp.r | 12 lubridate-1.7.8/lubridate/R/time-zones.r | 14 lubridate-1.7.8/lubridate/R/timespans.r | 10 lubridate-1.7.8/lubridate/R/update.r | 2 lubridate-1.7.8/lubridate/R/util.r | 55 lubridate-1.7.8/lubridate/README.md | 83 - lubridate-1.7.8/lubridate/build/vignette.rds |binary lubridate-1.7.8/lubridate/cleanup | 5 lubridate-1.7.8/lubridate/inst/doc/lubridate.R | 38 lubridate-1.7.8/lubridate/inst/doc/lubridate.html | 81 lubridate-1.7.8/lubridate/man/DateTimeUpdate.Rd | 11 lubridate-1.7.8/lubridate/man/Deprecated.Rd | 56 lubridate-1.7.8/lubridate/man/Period-class.Rd | 2 lubridate-1.7.8/lubridate/man/Timespan-class.Rd | 6 lubridate-1.7.8/lubridate/man/as_date.Rd | 5 lubridate-1.7.8/lubridate/man/cyclic_encoding.Rd |only lubridate-1.7.8/lubridate/man/date.Rd | 7 lubridate-1.7.8/lubridate/man/date_utils.Rd |only lubridate-1.7.8/lubridate/man/day.Rd | 19 lubridate-1.7.8/lubridate/man/duration.Rd | 9 lubridate-1.7.8/lubridate/man/format_ISO8601.Rd |only lubridate-1.7.8/lubridate/man/format_ISO8601_precision_check.Rd |only lubridate-1.7.8/lubridate/man/guess_formats.Rd | 23 lubridate-1.7.8/lubridate/man/hidden_aliases.Rd | 5 lubridate-1.7.8/lubridate/man/hms.Rd | 10 lubridate-1.7.8/lubridate/man/interval.Rd | 14 lubridate-1.7.8/lubridate/man/lubridate-package.Rd | 6 lubridate-1.7.8/lubridate/man/make_datetime.Rd | 11 lubridate-1.7.8/lubridate/man/month.Rd | 4 lubridate-1.7.8/lubridate/man/mplus.Rd | 13 lubridate-1.7.8/lubridate/man/now.Rd | 24 lubridate-1.7.8/lubridate/man/parse_date_time.Rd | 164 +- lubridate-1.7.8/lubridate/man/period.Rd | 12 lubridate-1.7.8/lubridate/man/posix_utils.Rd |only lubridate-1.7.8/lubridate/man/reexports.Rd |only lubridate-1.7.8/lubridate/man/round_date.Rd | 112 - lubridate-1.7.8/lubridate/man/stamp.Rd | 10 lubridate-1.7.8/lubridate/man/time_length.Rd | 1 lubridate-1.7.8/lubridate/man/tz.Rd | 74 lubridate-1.7.8/lubridate/man/week.Rd | 4 lubridate-1.7.8/lubridate/man/within-interval.Rd | 19 lubridate-1.7.8/lubridate/man/year.Rd | 4 lubridate-1.7.8/lubridate/man/ymd.Rd | 100 - lubridate-1.7.8/lubridate/man/ymd_hms.Rd | 160 + lubridate-1.7.8/lubridate/src/Makevars | 30 lubridate-1.7.8/lubridate/src/Makevars.win |only lubridate-1.7.8/lubridate/tests/testthat.R | 2 lubridate-1.7.8/lubridate/tests/testthat/setup-options.R |only lubridate-1.7.8/lubridate/tests/testthat/test-Dates.R | 29 lubridate-1.7.8/lubridate/tests/testthat/test-POSIXt.R | 26 lubridate-1.7.8/lubridate/tests/testthat/test-accessors.R | 230 +- lubridate-1.7.8/lubridate/tests/testthat/test-am-pm.R | 30 lubridate-1.7.8/lubridate/tests/testthat/test-daylight-savings.R | 10 lubridate-1.7.8/lubridate/tests/testthat/test-decimal-date.R | 2 lubridate-1.7.8/lubridate/tests/testthat/test-durations.R | 145 - lubridate-1.7.8/lubridate/tests/testthat/test-format_ISO8601.R |only lubridate-1.7.8/lubridate/tests/testthat/test-guess.R | 6 lubridate-1.7.8/lubridate/tests/testthat/test-instants.R | 30 lubridate-1.7.8/lubridate/tests/testthat/test-intervals.R | 62 lubridate-1.7.8/lubridate/tests/testthat/test-namespace.R | 2 lubridate-1.7.8/lubridate/tests/testthat/test-ops-addition.R | 75 lubridate-1.7.8/lubridate/tests/testthat/test-ops-compare.R | 36 lubridate-1.7.8/lubridate/tests/testthat/test-ops-division.R | 46 lubridate-1.7.8/lubridate/tests/testthat/test-ops-integer-division.R | 83 - lubridate-1.7.8/lubridate/tests/testthat/test-ops-integer-division.txt |only lubridate-1.7.8/lubridate/tests/testthat/test-ops-multiplication.R | 24 lubridate-1.7.8/lubridate/tests/testthat/test-ops-subtraction.R | 30 lubridate-1.7.8/lubridate/tests/testthat/test-parsers.R | 662 +++----- lubridate-1.7.8/lubridate/tests/testthat/test-periods.R | 444 +++-- lubridate-1.7.8/lubridate/tests/testthat/test-round.R | 18 lubridate-1.7.8/lubridate/tests/testthat/test-settors.R | 812 ++++------ lubridate-1.7.8/lubridate/tests/testthat/test-stamp.R | 8 lubridate-1.7.8/lubridate/tests/testthat/test-time-zones.R |only lubridate-1.7.8/lubridate/tests/testthat/test-timespans.R | 207 +- lubridate-1.7.8/lubridate/tests/testthat/test-update.R | 488 ++---- lubridate-1.7.8/lubridate/tests/testthat/test-utilities.R | 27 112 files changed, 3433 insertions(+), 3191 deletions(-)
Title: Download Data from the FAOSTAT Database
Description: Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations.
A list of functions to download statistics from FAOSTAT (database of the FAO <http://www.fao.org/faostat/en/#data>)
and WDI (database of the World Bank <https://data.worldbank.org/>), and to perform some harmonization operations.
Author: Michael C. J. Kao <michael.kao@fao.org>, Markus Gesmann, Filippo Gheri
Maintainer: Paul Rougieux <paul.rougieux@gmail.com>
Diff between FAOSTAT versions 2.1.1 dated 2020-02-04 and 2.1.2 dated 2020-04-06
FAOSTAT-2.1.1/FAOSTAT/man/read_faostat_bulk.Rd |only FAOSTAT-2.1.2/FAOSTAT/DESCRIPTION | 18 +++--- FAOSTAT-2.1.2/FAOSTAT/MD5 | 15 ++--- FAOSTAT-2.1.2/FAOSTAT/R/faostat_bulk_download.R | 62 ++++++++++++++------- FAOSTAT-2.1.2/FAOSTAT/inst/doc/FAOSTAT.R | 26 ++++++++ FAOSTAT-2.1.2/FAOSTAT/inst/doc/FAOSTAT.Rnw | 50 ++++++++++++++-- FAOSTAT-2.1.2/FAOSTAT/inst/doc/FAOSTAT.pdf |binary FAOSTAT-2.1.2/FAOSTAT/man/download_faostat_bulk.Rd | 56 ++++++++++++++++-- FAOSTAT-2.1.2/FAOSTAT/vignettes/FAOSTAT.Rnw | 50 ++++++++++++++-- 9 files changed, 221 insertions(+), 56 deletions(-)
Title: Randomization for Block Random Clinical Trials
Description: Create randomizations for block random clinical trials. Can also produce a pdf file of randomization cards.
Author: Greg Snow <538280@gmail.com>
Maintainer: Greg Snow <538280@gmail.com>
Diff between blockrand versions 1.3 dated 2013-01-18 and 1.5 dated 2020-04-06
DESCRIPTION | 22 +++++++++++----------- MD5 | 12 ++++++------ NAMESPACE | 4 ++++ R/blockrand.R | 6 +++++- man/blockrand.Rd | 2 +- man/blockrand.package.Rd | 4 ++-- man/plot.blockrand.Rd | 2 +- 7 files changed, 30 insertions(+), 22 deletions(-)
Title: Low-Rank Methods for MVN and MVT Probabilities
Description: Implementation of the classic Genz algorithm and a novel tile-low-rank algorithm for computing relatively high-dimensional multivariate normal (MVN) and Student-t (MVT) probabilities.
References used for this package:
Foley, James, Andries van Dam, Steven Feiner, and John Hughes.
"Computer Graphics: Principle and Practice". Addison-Wesley
Publishing Company. Reading, Massachusetts (1987, ISBN:0-201-84840-6 1);
Genz, A., "Numerical computation of multivariate
normal probabilities," Journal of Computational and
Graphical Statistics, 1, 141-149 (1992) <doi:10.1080/10618600.1992.10477010>;
Cao, J., Genton, M. G., Keyes, D. E., & Turkiyyah, G. M. "Exploiting Low
Rank Covariance Structures for Computing High-Dimensional Normal and Student-
t Probabilities" (2019) <https://marcgenton.github.io/2019.CGKT.manuscript.pdf>.
Author: Jian Cao, Marc Genton, David Keyes, George Turkiyyah
Maintainer: Jian Cao <jian.cao@kaust.edu.sa>
Diff between tlrmvnmvt versions 1.0.1 dated 2020-01-11 and 1.1.0 dated 2020-04-06
tlrmvnmvt-1.0.1/tlrmvnmvt/R/mvt.R |only tlrmvnmvt-1.0.1/tlrmvnmvt/R/tlrmvn.R |only tlrmvnmvt-1.0.1/tlrmvnmvt/R/tlrmvt.R |only tlrmvnmvt-1.0.1/tlrmvnmvt/man/mv_genz.Rd |only tlrmvnmvt-1.0.1/tlrmvnmvt/man/mv_tlr.Rd |only tlrmvnmvt-1.0.1/tlrmvnmvt/tests/mv_genz.R |only tlrmvnmvt-1.0.1/tlrmvnmvt/tests/mv_tlr.R |only tlrmvnmvt-1.1.0/tlrmvnmvt/DESCRIPTION | 8 tlrmvnmvt-1.1.0/tlrmvnmvt/INDEX | 6 tlrmvnmvt-1.1.0/tlrmvnmvt/MD5 | 25 - tlrmvnmvt-1.1.0/tlrmvnmvt/NAMESPACE | 2 tlrmvnmvt-1.1.0/tlrmvnmvt/NEWS.md | 11 tlrmvnmvt-1.1.0/tlrmvnmvt/R/mvn.R | 297 +++++++++++++++------ tlrmvnmvt-1.1.0/tlrmvnmvt/build/partial.rdb |binary tlrmvnmvt-1.1.0/tlrmvnmvt/man/algorithms.Rd |only tlrmvnmvt-1.1.0/tlrmvnmvt/man/pmvn.Rd |only tlrmvnmvt-1.1.0/tlrmvnmvt/man/pmvt.Rd |only tlrmvnmvt-1.1.0/tlrmvnmvt/man/tlrmvnmvt-package.Rd | 4 tlrmvnmvt-1.1.0/tlrmvnmvt/tests/test_pmvn_pmvt.R |only 19 files changed, 244 insertions(+), 109 deletions(-)
Title: R Source Code Similarity Evaluation
Description: An implementation of a novel method to quantify the similarity
the code-base of R functions by means of program dependence graphs.
Possible use cases include detection of code clones for improving
software quality and of plagiarism among students' homework assignments.
Author: Maciej Bartoszuk [aut, cre] (<https://orcid.org/0000-0001-6088-8273>),
Marek Gagolewski [aut] (<https://orcid.org/0000-0003-0637-6028>)
Maintainer: Maciej Bartoszuk <bartoszuk@rexamine.com>
Diff between SimilaR versions 1.0.6 dated 2019-07-01 and 1.0.7 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/common.h | 11 ++++++++++- 3 files changed, 16 insertions(+), 7 deletions(-)
Title: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data
Visualization and Processing
Description: Set of tools for downloading, reading, visualizing and processing GEDI Level1B, Level2A and Level2B data.
Author: Carlos Alberto Silva [aut, cre, cph],
Caio Hamamura [aut, cph],
Ruben Valbuena [aut, ctb],
Steven Hancock [aut, ctb],
Adrian Cardil [aut, ctb],
Eben North Broadbent [aut, ctb],
Danilo Roberti Alves de Almeida [aut, ctb],
Celso H. L. Silva Junior [aut, ctb],
Carine Klauberg [aut, ctb],
Burton Garbow [cph] (Is the author of the MINPACK-1 Least Squares
Fitting Library),
Kenneth Hillstrom [cph] (Is the author of the MINPACK-1 Least Squares
Fitting Library),
Jorge More [cph] (Is the author of the MINPACK-1 Least Squares Fitting
Library),
Craig Markwardt [cph] (Is the author of the enhanced MINPACK-1 Least
Squares Fitting Library)
Maintainer: Carlos Alberto Silva <carlos_engflorestal@outlook.com>
Diff between rGEDI versions 0.1.2 dated 2020-04-02 and 0.1.6 dated 2020-04-06
DESCRIPTION | 16 MD5 | 138 ++++---- NAMESPACE | 2 R/class.gedi.R | 3 R/clipLevel1B.R | 558 +++++++++++++++++----------------- R/clipLevel1BGeo.R | 6 R/clipLevel2A.R | 4 R/clipLevel2AM.R | 6 R/clipLevel2B.R | 4 R/clipLevel2BPAIProfile.R | 6 R/clipLevel2BPAVDProfile.R | 6 R/clipLevel2BVPM.R | 6 R/gedifinder.R | 44 ++ R/getLevel1BGeo.R | 3 R/getLevel1BWF.R | 3 R/getLevel2AM.R | 3 R/getLevel2BPAIProfile.R | 3 R/getLevel2BPAVDProfile.R | 3 R/getLevel2BVPM.R | 3 R/gridStatsLevel2AM.R | 3 R/gridStatsLevel2BVPM.R | 3 R/plotPAIProfile.R | 3 R/plotPAVDProfile.R | 3 R/plotWFMetrics.R | 5 R/polyStatsLevel2AM.R | 3 R/polyStatsLevel2BVPM.R | 3 R/readLevel1B.R | 3 R/readLevel2A.R | 3 R/readLevel2B.R | 3 README.md | 19 - configure | 8 configure.ac | 8 inst/doc/tutorial.R | 9 inst/doc/tutorial.Rmd | 13 inst/doc/tutorial.html | 67 ++-- man/clipLevel1B.Rd | 2 man/clipLevel1BGeo.Rd | 3 man/clipLevel1BGeoGeometry.Rd | 3 man/clipLevel1BGeometry.Rd | 2 man/clipLevel2A.Rd | 2 man/clipLevel2AGeometry.Rd | 2 man/clipLevel2AM.Rd | 3 man/clipLevel2AMGeometry.Rd | 3 man/clipLevel2B.Rd | 2 man/clipLevel2BGeometry.Rd | 2 man/clipLevel2BPAIProfile.Rd | 3 man/clipLevel2BPAIProfileGeometry.Rd | 3 man/clipLevel2BPAVDProfile.Rd | 3 man/clipLevel2BPAVDProfileGeometry.Rd | 3 man/clipLevel2BVPM.Rd | 3 man/clipLevel2BVPMGeometry.Rd | 3 man/gedifinder.Rd | 32 + man/getLevel1BGeo.Rd | 3 man/getLevel1BWF.Rd | 3 man/getLevel2AM.Rd | 3 man/getLevel2BPAIProfile.Rd | 3 man/getLevel2BPAVDProfile.Rd | 3 man/getLevel2BVPM.Rd | 3 man/gridStatsLevel2AM.Rd | 3 man/gridStatsLevel2BVPM.Rd | 3 man/plot.Rd | 3 man/plotPAIProfile.Rd | 3 man/plotPAVDProfile.Rd | 3 man/plotWFMetrics.Rd | 5 man/polyStatsLevel2AM.Rd | 3 man/polyStatsLevel2BVPM.Rd | 3 man/readLevel1B.Rd | 3 man/readLevel2A.Rd | 3 man/readLevel2B.Rd | 3 vignettes/tutorial.Rmd | 13 70 files changed, 623 insertions(+), 490 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for descriptive statistics (e.g., frequency table, cross tabulation, multilevel descriptive statistics, coefficient alpha and omega, and various effect size measures), missing data (e.g., descriptive statistics for missing data, missing data pattern and auxiliary variable analysis), data management (e.g., reading and writing SPSS files, grand-mean and group-mean centering, recode variables and reverse code items, and scale and group scores), and statistical analysis (e.g., confidence intervals, Levene's test, and sample size determination).
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.2.2 dated 2020-02-26 and 0.3.0 dated 2020-04-06
misty-0.2.2/misty/R/print.alpha.coef.R |only misty-0.2.2/misty/R/print.cont.coef.R |only misty-0.2.2/misty/R/print.cramers.v.R |only misty-0.2.2/misty/R/print.na.auxiliary.R |only misty-0.2.2/misty/R/print.na.coverage.R |only misty-0.2.2/misty/R/print.phi.coef.R |only misty-0.2.2/misty/R/print.poly.cor.R |only misty-0.2.2/misty/man/print.alpha.coef.Rd |only misty-0.2.2/misty/man/print.cont.coef.Rd |only misty-0.2.2/misty/man/print.cramers.v.Rd |only misty-0.2.2/misty/man/print.na.auxiliary.Rd |only misty-0.2.2/misty/man/print.na.coverage.Rd |only misty-0.2.2/misty/man/print.phi.coef.Rd |only misty-0.2.2/misty/man/print.poly.cor.Rd |only misty-0.3.0/misty/DESCRIPTION | 14 misty-0.3.0/misty/MD5 | 176 ++++---- misty-0.3.0/misty/NAMESPACE | 29 + misty-0.3.0/misty/NEWS.md | 35 + misty-0.3.0/misty/R/alpha.coef.R | 211 +++++++--- misty-0.3.0/misty/R/as.na.R | 74 ++- misty-0.3.0/misty/R/center.R | 6 misty-0.3.0/misty/R/ci.mean.R |only misty-0.3.0/misty/R/ci.mean.diff.R |only misty-0.3.0/misty/R/ci.median.R |only misty-0.3.0/misty/R/ci.prop.R |only misty-0.3.0/misty/R/ci.prop.diff.R |only misty-0.3.0/misty/R/ci.sd.R |only misty-0.3.0/misty/R/ci.var.R |only misty-0.3.0/misty/R/cohens.d.R | 86 ++-- misty-0.3.0/misty/R/cont.coef.R | 23 - misty-0.3.0/misty/R/cor.matrix.R | 200 ++++++++-- misty-0.3.0/misty/R/cramers.v.R | 29 - misty-0.3.0/misty/R/crosstab.R | 40 +- misty-0.3.0/misty/R/descript.R | 140 +++---- misty-0.3.0/misty/R/df.merge.R | 56 +- misty-0.3.0/misty/R/df.rbind.R | 46 +- misty-0.3.0/misty/R/df.rename.R | 2 misty-0.3.0/misty/R/df.sort.R | 2 misty-0.3.0/misty/R/dummy.c.R | 20 - misty-0.3.0/misty/R/eta.sq.R | 28 - misty-0.3.0/misty/R/freq.R | 52 +- misty-0.3.0/misty/R/group.scores.R | 6 misty-0.3.0/misty/R/kurtosis.R | 10 misty-0.3.0/misty/R/levenes.test.R |only misty-0.3.0/misty/R/multilevel.descript.R | 40 +- misty-0.3.0/misty/R/multilevel.icc.R | 26 - misty-0.3.0/misty/R/na.as.R | 8 misty-0.3.0/misty/R/na.auxiliary.R | 43 +- misty-0.3.0/misty/R/na.coverage.R | 15 misty-0.3.0/misty/R/na.descript.R | 34 - misty-0.3.0/misty/R/na.indicator.R | 4 misty-0.3.0/misty/R/na.pattern.R | 28 - misty-0.3.0/misty/R/na.prop.R | 4 misty-0.3.0/misty/R/omega.coef.R |only misty-0.3.0/misty/R/phi.coef.R | 45 +- misty-0.3.0/misty/R/poly.cor.R | 151 +++---- misty-0.3.0/misty/R/print.ci.R |only misty-0.3.0/misty/R/print.coef.R |only misty-0.3.0/misty/R/print.cohens.d.R | 34 - misty-0.3.0/misty/R/print.cor.matrix.R | 53 +- misty-0.3.0/misty/R/print.crosstab.R | 334 ++++++++-------- misty-0.3.0/misty/R/print.descript.R | 61 +-- misty-0.3.0/misty/R/print.eta.sq.R | 20 - misty-0.3.0/misty/R/print.freq.R | 142 +++---- misty-0.3.0/misty/R/print.multilevel.descript.R | 40 +- misty-0.3.0/misty/R/print.na.descript.R | 30 - misty-0.3.0/misty/R/print.na.pattern.R | 10 misty-0.3.0/misty/R/print.square.matrix.R |only misty-0.3.0/misty/R/print.test.R |only misty-0.3.0/misty/R/read.mplus.R | 41 +- misty-0.3.0/misty/R/read.sav.R | 54 +- misty-0.3.0/misty/R/read.xlsx.R |only misty-0.3.0/misty/R/reverse.item.R | 4 misty-0.3.0/misty/R/run.mplus.R | 2 misty-0.3.0/misty/R/rwg.lindell.R | 18 misty-0.3.0/misty/R/scores.R | 25 - misty-0.3.0/misty/R/size.cor.R | 20 - misty-0.3.0/misty/R/size.mean.R | 16 misty-0.3.0/misty/R/size.prop.R | 32 - misty-0.3.0/misty/R/skewness.R | 8 misty-0.3.0/misty/R/trim.R | 4 misty-0.3.0/misty/R/write.mplus.R | 16 misty-0.3.0/misty/R/write.sav.R | 34 - misty-0.3.0/misty/build/vignette.rds |binary misty-0.3.0/misty/inst/doc/misty.ltx | 476 ++++++++++++++++++++++++ misty-0.3.0/misty/inst/doc/misty.pdf |binary misty-0.3.0/misty/man/alpha.coef.Rd | 62 ++- misty-0.3.0/misty/man/as.na.Rd | 17 misty-0.3.0/misty/man/center.Rd | 4 misty-0.3.0/misty/man/ci.mean.Rd |only misty-0.3.0/misty/man/ci.mean.diff.Rd |only misty-0.3.0/misty/man/ci.median.Rd |only misty-0.3.0/misty/man/ci.prop.Rd |only misty-0.3.0/misty/man/ci.prop.diff.Rd |only misty-0.3.0/misty/man/ci.sd.Rd |only misty-0.3.0/misty/man/ci.var.Rd |only misty-0.3.0/misty/man/cohens.d.Rd | 17 misty-0.3.0/misty/man/cont.coef.Rd | 6 misty-0.3.0/misty/man/cor.matrix.Rd | 30 - misty-0.3.0/misty/man/cramers.v.Rd | 6 misty-0.3.0/misty/man/levenes.test.Rd |only misty-0.3.0/misty/man/omega.coef.Rd |only misty-0.3.0/misty/man/print.ci.Rd |only misty-0.3.0/misty/man/print.coef.Rd |only misty-0.3.0/misty/man/print.cohens.d.Rd | 7 misty-0.3.0/misty/man/print.cor.matrix.Rd | 6 misty-0.3.0/misty/man/print.square.matrix.Rd |only misty-0.3.0/misty/man/print.test.Rd |only misty-0.3.0/misty/man/read.xlsx.Rd |only misty-0.3.0/misty/vignettes/misty.ltx | 476 ++++++++++++++++++++++++ 110 files changed, 2529 insertions(+), 1259 deletions(-)
Title: Methods for Calculating 'EQ-5D' Utility Index Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://www.euroqol.org>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://www.euroqol.org/eq-5d-instruments/eq-5d-3l-about>) or a five-level
(EQ-5D-5L, <https://www.euroqol.org/eq-5d-instruments/eq-5d-5l-about>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension scores. 25 TTO and 11 VAS EQ-5D-3L value
sets including those for countries in Szende et al (2007)
<doi:10.1007/1-4020-5511-0> and Szende et al (2014)
<doi:10.1007/978-94-007-7596-1>, 20 EQ-5D-5L EQ-VT value sets from the EuroQol
website, and the EQ-5D-5L crosswalk value sets developed by van Hout et al. (2012)
<doi:10.1016/j.jval.2012.02.008> are included. Additionally, a shiny web tool is
included to enable the calculation, visualisation and automated statistical
analysis of EQ-5D index values via a web browser using EQ-5D dimension scores
stored in CSV or Excel files.
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.6.0 dated 2020-02-04 and 0.7.0 dated 2020-04-06
DESCRIPTION | 6 - MD5 | 54 +++++++----- NAMESPACE | 6 + NEWS.md | 16 +++ R/eq5d.R | 119 +++++++++++++++------------ R/eq5d3l.R | 13 ++ R/eq5d5l.R | 3 R/eq5dcw.R | 3 R/eq5dds.R |only R/helpers.R |only README.md | 93 +++++++++++++++++++-- inst/doc/eq5d.R | 30 ++++++ inst/doc/eq5d.Rmd | 55 +++++++++++- inst/doc/eq5d.html | 98 +++++++++++++++++----- inst/shiny/server.R | 119 +++++++++++++++++++++++---- inst/shiny/ui.R | 44 ++++++--- man/eq5d.Rd | 5 + man/eq5d3l.Rd | 3 man/eq5d5l.Rd | 3 man/eq5dcw.Rd | 3 man/eq5dds.Rd |only man/figures/shiny_app_screenshot_barplot.png |only man/figures/shiny_app_screenshot_density.png |binary man/figures/shiny_app_screenshot_ecdf.png |binary man/figures/shiny_app_screenshot_posthoc.png |binary man/figures/shiny_app_screenshot_radar.png |binary man/getHealthStates.Rd |only man/splitHealthStates.Rd |only tests/testthat/test-eq5d.R | 10 +- tests/testthat/test-eq5dds.R |only tests/testthat/test-helpers.R |only vignettes/eq5d.Rmd | 55 +++++++++++- 32 files changed, 581 insertions(+), 157 deletions(-)
Title: Double Generalized Linear Models Extending Poisson Regression
Description: Model estimation, dispersion testing and diagnosis of hyper-Poisson
Saez-Castillo, A.J. and Conde-Sanchez, A. (2013)
<doi:10.1016/j.csda.2012.12.009> and Conway-Maxwell-Poisson Huang, A. (2017)
<doi:10.1177/1471082X17697749> regression models.
Author: Antonio Jose Saez-Castillo [aut],
Antonio Conde-Sanchez [aut],
Francisco Martinez [aut, cre]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between DGLMExtPois versions 0.1.1 dated 2020-02-03 and 0.1.2 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- NEWS.md | 8 +++++--- R/glm_hP.R | 2 +- R/summary_CMP.R | 15 +++++++++++++++ R/summary_hP.R | 15 ++++++++++++++- man/Bids.Rd | 6 ++++-- man/DGLMExtPois.Rd | 18 +++++++++--------- 9 files changed, 61 insertions(+), 29 deletions(-)
Title: Cellwise Robust M-Regression and SPADIMO
Description: Method for fitting a cellwise robust linear M-regression model (CRM, Filzmoser et al. (2020) <DOI:10.1016/j.csda.2020.106944>) that yields both a map of cellwise outliers consistent with the linear model, and a vector of regression coefficients that is robust against vertical outliers and leverage points. As a by-product, the method yields an imputed data set that contains estimates of what the values in cellwise outliers would need to amount to if they had fit the model. The package also provides diagnostic tools for analyzing casewise and cellwise outliers using sparse directions of maximal outlyingness (SPADIMO, Debruyne et al. (2019) <DOI:10.1007/s11222-018-9831-5>).
Author: Peter Filzmoser [aut],
Sebastiaan Hoppner [aut, cre],
Irene Ortner [aut],
Sven Serneels [aut],
Tim Verdonck [aut]
Maintainer: Sebastiaan Hoppner <sebastiaan.hoppner@kuleuven.be>
Diff between crmReg versions 1.0.0 dated 2020-03-31 and 1.0.1 dated 2020-04-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/cellwiseheatmap.Rd | 2 +- man/crm.Rd | 2 +- man/crmReg-package.Rd | 2 +- man/predict.crm.Rd | 2 +- 6 files changed, 12 insertions(+), 12 deletions(-)
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990's.
For graphics, have pretty (Log-scale) axes, an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Werner Stahel [ctb] (Functions: compresid2way(), f.robftest(), last(),
p.scales(), p.dnorm()),
Andreas Ruckstuhl [ctb] (Functions: p.arrows(), p.profileTraces(),
p.res.2x()),
Christian Keller [ctb] (Functions: histBxp(), p.tachoPlot()),
Kjetil Halvorsen [ctb] (Functions: KSd(), ecdf.ksCI()),
Alain Hauser [ctb] (Functions: cairoSwd(), is.whole(),
toLatex.numeric()*),
Christoph Buser [ctb] (to function Duplicated()),
Lorenz Gygax [ctb] (to function p.res.2fact()),
Bill Venables [ctb] (Functions: empty.dimnames(), primes()),
Tony Plate [ctb] (to inv.seq()),
Isabelle Fl<fc>ckiger [ctb],
Marcel Wolbers [ctb],
Markus Keller [ctb],
Sandrine Dudoit [ctb],
Jane Fridlyand [ctb],
Greg Snow [ctb] (to loessDemo()),
Henrik Aa. Nielsen [ctb] (to loessDemo()),
Vincent Carey [ctb],
Ben Bolker [ctb],
Philippe Grosjean [ctb],
Fr<e9>d<e9>ric Ibanez [ctb],
Caterina Savi [ctb],
Charles Geyer [ctb],
Jens Oehlschl<e4>gel [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-5 dated 2020-02-09 and 1.1-6 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 6 +++++- R/unix/package-props.R | 2 +- inst/NEWS.Rd | 15 +++++++++++++++ man/primes.Rd | 4 +++- man/unix/pkgLibs.Rd | 5 +++-- 7 files changed, 37 insertions(+), 15 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.4-4 dated 2019-08-07 and 0.3.6 dated 2020-04-06
DESCRIPTION | 8 MD5 | 260 +- NAMESPACE | 1 NEWS | 6 R/FormatCheck.R | 2 R/ParamSetSugar.R | 2 R/learner.R | 10 README.md | 4 build/vignette.rds |binary inst/doc/a_1_getting_started.R | 3 inst/doc/a_1_getting_started.html | 1119 ++++++------ inst/doc/a_2_mlrCPO_core.R | 3 inst/doc/a_2_mlrCPO_core.html | 1285 +++++++------- inst/doc/a_3_all_CPOs.R | 3 inst/doc/a_3_all_CPOs.html | 1099 ++++++------ inst/doc/a_4_custom_CPOs.R | 3 inst/doc/a_4_custom_CPOs.html | 1402 +++++++--------- inst/doc/toc/vignettetoc.Rmd | 3 inst/doc/z_1_getting_started_terse.R | 3 inst/doc/z_1_getting_started_terse.html | 299 +-- inst/doc/z_2_mlrCPO_core_terse.R | 3 inst/doc/z_2_mlrCPO_core_terse.html | 377 ++-- inst/doc/z_3_all_CPOs_terse.R | 3 inst/doc/z_3_all_CPOs_terse.html | 243 +- inst/doc/z_4_custom_CPOs_terse.R | 3 inst/doc/z_4_custom_CPOs_terse.html | 703 +++----- man/CPO.Rd | 61 man/CPOConstructor.Rd | 32 man/CPOLearner.Rd | 27 man/CPOTrained.Rd | 83 man/NULLCPO.Rd | 89 - man/applyCPO.Rd | 72 man/as.list.CPO.Rd | 72 man/attachCPO.Rd | 37 man/clearRI.Rd | 62 man/composeCPO.Rd | 31 man/cpoApplyFun.Rd | 135 - man/cpoApplyFunRegrTarget.Rd | 138 - man/cpoAsNumeric.Rd | 130 - man/cpoCache.Rd | 113 - man/cpoCbind.Rd | 121 - man/cpoCollapseFact.Rd | 132 - man/cpoDropConstants.Rd | 134 - man/cpoDummyEncode.Rd | 133 - man/cpoFilterAnova.Rd | 174 + man/cpoFilterCarscore.Rd | 175 + man/cpoFilterChiSquared.Rd | 174 + man/cpoFilterFeatures.Rd | 218 +- man/cpoFilterGainRatio.Rd | 174 + man/cpoFilterInformationGain.Rd | 174 + man/cpoFilterKruskal.Rd | 174 + man/cpoFilterLinearCorrelation.Rd | 174 + man/cpoFilterMrmr.Rd | 176 +- man/cpoFilterOneR.Rd | 176 +- man/cpoFilterPermutationImportance.Rd | 182 +- man/cpoFilterRankCorrelation.Rd | 174 + man/cpoFilterRelief.Rd | 174 + man/cpoFilterRfCImportance.Rd | 175 + man/cpoFilterRfImportance.Rd | 174 + man/cpoFilterRfSRCImportance.Rd | 174 + man/cpoFilterRfSRCMinDepth.Rd | 174 + man/cpoFilterSymmetricalUncertainty.Rd | 174 + man/cpoFilterUnivariate.Rd | 178 +- man/cpoFilterVariance.Rd | 174 + man/cpoFixFactors.Rd | 133 - man/cpoIca.Rd | 141 - man/cpoImpactEncodeClassif.Rd | 132 - man/cpoImpactEncodeRegr.Rd | 131 - man/cpoImpute.Rd | 197 +- man/cpoImputeConstant.Rd | 154 + man/cpoImputeHist.Rd | 156 + man/cpoImputeLearner.Rd | 155 + man/cpoImputeMax.Rd | 156 + man/cpoImputeMean.Rd | 155 + man/cpoImputeMedian.Rd | 153 + man/cpoImputeMin.Rd | 156 + man/cpoImputeMode.Rd | 155 + man/cpoImputeNormal.Rd | 156 + man/cpoImputeUniform.Rd | 156 + man/cpoLogTrafoRegr.Rd | 114 - man/cpoMakeCols.Rd | 114 - man/cpoMissingIndicators.Rd | 132 - man/cpoModelMatrix.Rd | 131 - man/cpoOversample.Rd | 113 - man/cpoPca.Rd | 135 - man/cpoProbEncode.Rd | 130 - man/cpoQuantileBinNumerics.Rd | 131 - man/cpoRegrResiduals.Rd | 136 - man/cpoResponseFromSE.Rd | 130 - man/cpoSample.Rd | 123 - man/cpoScale.Rd | 132 - man/cpoScaleMaxAbs.Rd | 131 - man/cpoScaleRange.Rd | 132 - man/cpoSelect.Rd | 171 + man/cpoSmote.Rd | 123 - man/cpoSpatialSign.Rd | 131 - man/cpoTemplate.Rd | 15 man/cpoTransformParams.Rd | 131 - man/cpoWrap.Rd | 142 - man/getCPOAffect.Rd | 22 man/getCPOClass.Rd | 123 - man/getCPOConstructor.Rd | 52 man/getCPOId.Rd | 25 man/getCPOName.Rd | 95 - man/getCPOOperatingType.Rd | 90 - man/getCPOPredictType.Rd | 83 man/getCPOProperties.Rd | 90 - man/getCPOTrainedCPO.Rd | 103 - man/getCPOTrainedCapability.Rd | 89 - man/getCPOTrainedState.Rd | 65 man/getLearnerBare.Rd | 6 man/getLearnerCPO.Rd | 6 man/grapes-greater-than-greater-than-grapes.Rd | 93 - man/identicalCPO.Rd | 32 man/internal-grapes-greater-than-greater-than-grapes.Rd | 12 man/is.inverter.Rd | 31 man/is.nullcpo.Rd | 6 man/is.retrafo.Rd | 31 man/makeCPO.Rd | 178 +- man/makeCPOCase.Rd | 178 +- man/makeCPOMultiplex.Rd | 143 - man/makeCPOTrainedFromState.Rd | 65 man/nullToNullcpo.Rd | 6 man/nullcpoToNull.Rd | 6 man/pSS.Rd | 2 man/pipeCPO.Rd | 74 man/print.CPOConstructor.Rd | 76 man/setCPOId.Rd | 24 tests/run-zzzlint.R | 3 tests/testthat/test_cpo_impute.R | 6 vignettes/toc/vignettetoc.Rmd | 3 131 files changed, 10276 insertions(+), 8316 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] (<https://orcid.org/0000-0001-8867-762X>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.1.2 dated 2019-12-10 and 0.1.3 dated 2020-04-06
mlr3pipelines-0.1.2/mlr3pipelines/build |only mlr3pipelines-0.1.2/mlr3pipelines/inst/doc/comparison_mlr3pipelines_mlr_sklearn.R |only mlr3pipelines-0.1.2/mlr3pipelines/inst/doc/comparison_mlr3pipelines_mlr_sklearn.Rmd |only mlr3pipelines-0.1.2/mlr3pipelines/inst/doc/introduction.R |only mlr3pipelines-0.1.2/mlr3pipelines/inst/doc/introduction.Rmd |only mlr3pipelines-0.1.2/mlr3pipelines/vignettes |only mlr3pipelines-0.1.3/mlr3pipelines/DESCRIPTION | 7 mlr3pipelines-0.1.3/mlr3pipelines/MD5 | 48 mlr3pipelines-0.1.3/mlr3pipelines/NAMESPACE | 1 mlr3pipelines-0.1.3/mlr3pipelines/NEWS.md | 4 mlr3pipelines-0.1.3/mlr3pipelines/R/Graph.R | 27 mlr3pipelines-0.1.3/mlr3pipelines/R/GraphLearner.R | 5 mlr3pipelines-0.1.3/mlr3pipelines/R/PipeOpClassifAvg.R | 23 mlr3pipelines-0.1.3/mlr3pipelines/R/PipeOpImputeNewlvl.R | 2 mlr3pipelines-0.1.3/mlr3pipelines/R/PipeOpLearner.R | 2 mlr3pipelines-0.1.3/mlr3pipelines/R/PipeOpTaskPreproc.R | 2 mlr3pipelines-0.1.3/mlr3pipelines/README.md | 9 mlr3pipelines-0.1.3/mlr3pipelines/inst/doc/comparison_mlr3pipelines_mlr_sklearn.html | 363 ++-- mlr3pipelines-0.1.3/mlr3pipelines/inst/doc/introduction.html | 758 ++++------ mlr3pipelines-0.1.3/mlr3pipelines/man/mlr_learners_graph.Rd | 5 mlr3pipelines-0.1.3/mlr3pipelines/man/mlr_pipeops_imputenewlvl.Rd | 2 mlr3pipelines-0.1.3/mlr3pipelines/man/mlr_pipeops_learner.Rd | 2 mlr3pipelines-0.1.3/mlr3pipelines/tests/testthat/helper_functions.R | 10 mlr3pipelines-0.1.3/mlr3pipelines/tests/testthat/test_learner_weightedaverage.R | 2 mlr3pipelines-0.1.3/mlr3pipelines/tests/testthat/test_pipeop_ensemble.R | 2 mlr3pipelines-0.1.3/mlr3pipelines/tests/testthat/test_pipeop_removeconstants.R | 2 26 files changed, 626 insertions(+), 650 deletions(-)
More information about covid19.analytics at CRAN
Permanent link
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy to remember set of tidy functions for exploratory data analysis. Introduces three main verbs. explore() to graphically explore a variable or table, describe() to describe a variable or table and report() to create an automated report.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 0.5.4 dated 2020-02-09 and 0.5.5 dated 2020-04-06
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 7 ++++++ R/explore.R | 45 ++++++++++++++++++++++++++++++++----------- inst/doc/explore.R | 2 + inst/doc/explore.Rmd | 2 + inst/doc/explore.html | 8 ++++--- inst/doc/explore_mtcars.html | 4 +-- vignettes/explore.Rmd | 2 + 9 files changed, 65 insertions(+), 27 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2, QTI 2.1, Blackboard, Canvas, OpenOLAT,
ARSnova, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format
(NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Bettina Gruen [aut] (<https://orcid.org/0000-0001-7265-4773>),
Friedrich Leisch [aut] (<https://orcid.org/0000-0001-7278-1983>),
Nikolaus Umlauf [aut],
Mirko Birbaumer [ctb],
Dominik Ernst [ctb],
Patrik Keller [ctb],
Niels Smits [ctb],
Reto Stauffer [ctb],
Kenji Sato [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.3-5 dated 2020-04-04 and 2.3-6 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ inst/doc/exams.pdf |binary inst/doc/exams2.pdf |binary man/nops_language.Rd | 2 ++ 6 files changed, 16 insertions(+), 9 deletions(-)
Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis. Please see Vinue (2017) <doi:10.18637/jss.v077.i06>.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between Anthropometry versions 1.13 dated 2019-12-06 and 1.14 dated 2020-04-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 26 ++++---------------------- R/anthrCases.R | 9 ++++++--- inst/doc/Anthropometry.pdf |binary man/Anthropometry-package.Rd | 4 ++-- 6 files changed, 21 insertions(+), 36 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users.
Currently the only such package with read and write support for TIFF
files with floating point (real-numbered) pixels, and the only package
that can correctly import TIFF files that were saved from 'ImageJ' and
write TIFF files than can be correctly read by 'ImageJ'
<https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.0.4 dated 2019-10-25 and 2.0.5 dated 2020-04-06
ijtiff-2.0.4/ijtiff/R/text_io.R |only ijtiff-2.0.5/ijtiff/DESCRIPTION | 14 - ijtiff-2.0.5/ijtiff/MD5 | 60 ++++---- ijtiff-2.0.5/ijtiff/NAMESPACE | 4 ijtiff-2.0.5/ijtiff/NEWS.md | 6 ijtiff-2.0.5/ijtiff/R/graphics.R | 2 ijtiff-2.0.5/ijtiff/R/read.R | 19 ++ ijtiff-2.0.5/ijtiff/R/text-io.R |only ijtiff-2.0.5/ijtiff/R/utils.R | 66 +++++++-- ijtiff-2.0.5/ijtiff/R/write.R | 22 ++- ijtiff-2.0.5/ijtiff/README.md | 8 - ijtiff-2.0.5/ijtiff/inst/doc/reading-and-writing-images.R | 20 +- ijtiff-2.0.5/ijtiff/inst/doc/reading-and-writing-images.html | 31 +--- ijtiff-2.0.5/ijtiff/inst/doc/text-images.R | 2 ijtiff-2.0.5/ijtiff/inst/doc/text-images.html | 15 -- ijtiff-2.0.5/ijtiff/inst/doc/the-imagej-problem.R | 8 - ijtiff-2.0.5/ijtiff/inst/doc/the-imagej-problem.html | 73 ++++------ ijtiff-2.0.5/ijtiff/man/as_EBImage.Rd | 16 +- ijtiff-2.0.5/ijtiff/man/count_frames.Rd | 5 ijtiff-2.0.5/ijtiff/man/display.Rd | 2 ijtiff-2.0.5/ijtiff/man/ijtiff.Rd | 2 ijtiff-2.0.5/ijtiff/man/read_tags.Rd | 2 ijtiff-2.0.5/ijtiff/man/read_tif.Rd | 4 ijtiff-2.0.5/ijtiff/man/text-image-io.Rd | 10 + ijtiff-2.0.5/ijtiff/man/write_tif.Rd | 23 ++- ijtiff-2.0.5/ijtiff/tests/testthat.R | 2 ijtiff-2.0.5/ijtiff/tests/testthat/test-as_EBImage-examples.R | 1 ijtiff-2.0.5/ijtiff/tests/testthat/test-count_imgs-examples.R | 5 ijtiff-2.0.5/ijtiff/tests/testthat/test-graphics.R | 1 ijtiff-2.0.5/ijtiff/tests/testthat/test-io.R | 44 ++++-- ijtiff-2.0.5/ijtiff/tests/testthat/test-read_tags-examples.R | 3 ijtiff-2.0.5/ijtiff/tests/testthat/test-utils.R | 7 32 files changed, 307 insertions(+), 170 deletions(-)