Title: Calculate Crosstab and Topline Tables of Weighted Survey Data
Description: Calculate common types of tables for weighted survey data.
Options include topline and (2-way and 3-way) crosstab tables of
categorical or ordinal data as well as summary tables of weighted
numeric variables. Optionally, include the margin of error at
selected confidence intervals including the design effect. The
design effect is calculated as described by
Kish (1965) <doi:10.1002/bimj.19680100122> beginning
on page 257. Output takes the form of tibbles (simple data frames).
This package conveniently handles labelled data, such as that
commonly used by 'Stata' and 'SPSS.' Complex survey design is
not supported at this time.
Author: John D. Johnson [aut, cre]
Maintainer: John D. Johnson <john.d.johnson@marquette.edu>
Diff between pollster versions 0.1.0 dated 2020-03-25 and 0.1.1 dated 2020-04-08
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++------------- NAMESPACE | 1 - NEWS.md | 10 +++++++++- R/Crosstab.R | 22 ++++++++++++---------- R/Crosstab3way.R | 14 ++++++++------ R/DesignEffectAndMOE.R | 12 ------------ R/InternalHelperFunctions.R |only R/moeCrosstab.R | 27 +++++++++++++++------------ R/moeCrosstab3way.R | 28 +++++++++++++++------------- R/moeWaveCrosstab.R | 28 +++++++++++++++------------- R/moeWaveCrosstab3way.R | 28 +++++++++++++++------------- README.md | 29 ++++++++++++++++------------- inst/doc/crosstab3way.html | 24 ++++++++++++------------ inst/doc/crosstabs.html | 24 ++++++++++++------------ 15 files changed, 147 insertions(+), 135 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
Diff between MatTransMix versions 0.1.7 dated 2020-02-28 and 0.1.8 dated 2020-04-08
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NEWS | 4 ++++ data/Salary.RData |only man/IMDb.Rd | 4 +--- man/Salary.Rd |only man/crime.Rd | 4 +--- 7 files changed, 16 insertions(+), 14 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [aut],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.4.2 dated 2020-01-08 and 0.4.3 dated 2020-04-08
MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_fast.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_faster.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_fastest.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_slow.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_slower.Rd |only MazamaCoreUtils-0.4.2/MazamaCoreUtils/man/check_slowest.Rd |only MazamaCoreUtils-0.4.3/MazamaCoreUtils/DESCRIPTION | 8 MazamaCoreUtils-0.4.3/MazamaCoreUtils/MD5 | 42 MazamaCoreUtils-0.4.3/MazamaCoreUtils/NAMESPACE | 1 MazamaCoreUtils-0.4.3/MazamaCoreUtils/NEWS.md | 5 MazamaCoreUtils-0.4.3/MazamaCoreUtils/R/devtools_check.R | 158 -- MazamaCoreUtils-0.4.3/MazamaCoreUtils/R/pylogger.R | 1 MazamaCoreUtils-0.4.3/MazamaCoreUtils/build/vignette.rds |binary MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/cache-management.R | 12 MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/cache-management.html | 584 ++++--- MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/date-parsing.R | 2 MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/date-parsing.html | 417 ++--- MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/error-handling.R | 4 MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/error-handling.html | 647 ++++---- MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/logging.R | 10 MazamaCoreUtils-0.4.3/MazamaCoreUtils/inst/doc/logging.html | 746 +++++----- MazamaCoreUtils-0.4.3/MazamaCoreUtils/man/logLevels.Rd | 4 MazamaCoreUtils-0.4.3/MazamaCoreUtils/man/packageCheck.Rd |only MazamaCoreUtils-0.4.3/MazamaCoreUtils/man/timezoneLintRules.Rd | 4 MazamaCoreUtils-0.4.3/MazamaCoreUtils/tests/testthat/test-cacheManagement.R | 14 26 files changed, 1413 insertions(+), 1246 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick counts of variable combinations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Bill Denney [ctb],
Chris Haid [ctb],
Ryan Knight [ctb],
Malte Grosser [ctb],
Jonathan Zadra [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 1.2.1 dated 2020-01-22 and 2.0.0 dated 2020-04-08
janitor-1.2.1/janitor/R/adorn_crosstab.R |only janitor-1.2.1/janitor/R/convert_to_NA.R |only janitor-1.2.1/janitor/R/crosstab.R |only janitor-1.2.1/janitor/R/use_first_valid_of.R |only janitor-1.2.1/janitor/tests/testthat/test-adorn-crosstab.R |only janitor-1.2.1/janitor/tests/testthat/test-clean-NAs.R |only janitor-1.2.1/janitor/tests/testthat/test-crosstab.R |only janitor-1.2.1/janitor/tests/testthat/test-use-first-valid-of.R |only janitor-2.0.0/janitor/DESCRIPTION | 21 janitor-2.0.0/janitor/LICENSE | 4 janitor-2.0.0/janitor/MD5 | 175 - janitor-2.0.0/janitor/NAMESPACE | 112 janitor-2.0.0/janitor/NEWS.md | 520 ++-- janitor-2.0.0/janitor/R/adorn_ns.R | 217 + janitor-2.0.0/janitor/R/adorn_pct_formatting.R | 120 - janitor-2.0.0/janitor/R/adorn_percentages.R | 177 - janitor-2.0.0/janitor/R/adorn_rounding.R | 117 janitor-2.0.0/janitor/R/adorn_title.R | 177 - janitor-2.0.0/janitor/R/adorn_totals.R | 220 - janitor-2.0.0/janitor/R/as_and_untabyl.R | 182 - janitor-2.0.0/janitor/R/clean_names.R | 176 - janitor-2.0.0/janitor/R/compare_df_cols.R | 555 ++-- janitor-2.0.0/janitor/R/convert_to_date.R |only janitor-2.0.0/janitor/R/excel_dates.R | 176 - janitor-2.0.0/janitor/R/get_dupes.R | 135 - janitor-2.0.0/janitor/R/get_level_groups.R | 56 janitor-2.0.0/janitor/R/janitor.R | 60 janitor-2.0.0/janitor/R/janitor_deprecated.R | 180 + janitor-2.0.0/janitor/R/make_clean_names.R | 290 +- janitor-2.0.0/janitor/R/print_tabyl.R | 10 janitor-2.0.0/janitor/R/remove_empties.R | 233 + janitor-2.0.0/janitor/R/round_half_up.R | 84 janitor-2.0.0/janitor/R/round_to_fraction.R | 114 janitor-2.0.0/janitor/R/row_to_names.R | 84 janitor-2.0.0/janitor/R/tabyl.R | 616 ++--- janitor-2.0.0/janitor/R/tests.R | 378 +-- janitor-2.0.0/janitor/R/top_levels.R | 120 - janitor-2.0.0/janitor/R/utils.R | 32 janitor-2.0.0/janitor/README.md | 540 ++-- janitor-2.0.0/janitor/build/vignette.rds |binary janitor-2.0.0/janitor/inst/doc/janitor.R | 165 - janitor-2.0.0/janitor/inst/doc/janitor.Rmd | 407 +-- janitor-2.0.0/janitor/inst/doc/janitor.html | 1082 ++------- janitor-2.0.0/janitor/inst/doc/tabyls.R | 205 - janitor-2.0.0/janitor/inst/doc/tabyls.Rmd | 450 ++- janitor-2.0.0/janitor/inst/doc/tabyls.html | 1172 ++-------- janitor-2.0.0/janitor/man/add_totals_col.Rd | 2 janitor-2.0.0/janitor/man/add_totals_row.Rd | 2 janitor-2.0.0/janitor/man/adorn_crosstab.Rd | 3 janitor-2.0.0/janitor/man/adorn_ns.Rd | 6 janitor-2.0.0/janitor/man/adorn_pct_formatting.Rd | 7 janitor-2.0.0/janitor/man/adorn_percentages.Rd | 6 janitor-2.0.0/janitor/man/adorn_rounding.Rd | 21 janitor-2.0.0/janitor/man/adorn_totals.Rd | 8 janitor-2.0.0/janitor/man/chisq.test.Rd | 2 janitor-2.0.0/janitor/man/clean_names.Rd | 87 janitor-2.0.0/janitor/man/convert_to_NA.Rd | 2 janitor-2.0.0/janitor/man/convert_to_date.Rd |only janitor-2.0.0/janitor/man/crosstab.Rd | 24 janitor-2.0.0/janitor/man/excel_numeric_to_date.Rd | 8 janitor-2.0.0/janitor/man/get_dupes.Rd | 10 janitor-2.0.0/janitor/man/janitor_deprecated.Rd | 11 janitor-2.0.0/janitor/man/make_clean_names.Rd | 104 janitor-2.0.0/janitor/man/pipe.Rd | 2 janitor-2.0.0/janitor/man/remove_constant.Rd | 15 janitor-2.0.0/janitor/man/remove_empty.Rd | 16 janitor-2.0.0/janitor/man/remove_empty_cols.Rd | 5 janitor-2.0.0/janitor/man/remove_empty_rows.Rd | 4 janitor-2.0.0/janitor/man/row_to_names.Rd | 2 janitor-2.0.0/janitor/man/signif_half_up.Rd |only janitor-2.0.0/janitor/man/use_first_valid_of.Rd | 2 janitor-2.0.0/janitor/tests/testthat.R | 8 janitor-2.0.0/janitor/tests/testthat/test-add-totals.R | 620 ++--- janitor-2.0.0/janitor/tests/testthat/test-adorn-ns.R | 351 +- janitor-2.0.0/janitor/tests/testthat/test-adorn-pct-formatting.R | 344 +- janitor-2.0.0/janitor/tests/testthat/test-adorn-percentages.R | 396 ++- janitor-2.0.0/janitor/tests/testthat/test-adorn-rounding.R | 218 + janitor-2.0.0/janitor/tests/testthat/test-adorn-title.R | 330 +- janitor-2.0.0/janitor/tests/testthat/test-clean-names.R | 606 +++-- janitor-2.0.0/janitor/tests/testthat/test-compare_df_cols.R | 672 ++--- janitor-2.0.0/janitor/tests/testthat/test-convert_to_date.R |only janitor-2.0.0/janitor/tests/testthat/test-date-conversion.R | 196 - janitor-2.0.0/janitor/tests/testthat/test-get-dupes.R | 103 janitor-2.0.0/janitor/tests/testthat/test-get-level-groups.R | 56 janitor-2.0.0/janitor/tests/testthat/test-remove-empties.R | 284 +- janitor-2.0.0/janitor/tests/testthat/test-round_to_fraction.R | 164 - janitor-2.0.0/janitor/tests/testthat/test-row-to-names.R | 173 - janitor-2.0.0/janitor/tests/testthat/test-signif_half_up.R |only janitor-2.0.0/janitor/tests/testthat/test-tabyl-classifiers.R | 158 - janitor-2.0.0/janitor/tests/testthat/test-tabyl.R | 780 +++--- janitor-2.0.0/janitor/tests/testthat/test-tests.R | 204 - janitor-2.0.0/janitor/tests/testthat/test-top-levels.R | 130 - janitor-2.0.0/janitor/tests/testthat/test-utilities.R | 24 janitor-2.0.0/janitor/vignettes/janitor.Rmd | 407 +-- janitor-2.0.0/janitor/vignettes/tabyls.Rmd | 450 ++- 95 files changed, 8280 insertions(+), 8105 deletions(-)
Title: Compositional Data Analysis
Description: Provides functions for the consistent analysis of compositional
data (e.g. portions of substances) and positive numbers (e.g. concentrations)
in the way proposed by J. Aitchison and V. Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana-Delgado, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Diff between compositions versions 1.40-4 dated 2020-03-04 and 1.40-5 dated 2020-04-08
DESCRIPTION | 6 MD5 | 18 +- NAMESPACE | 4 R/and.R | 336 ++++++++++++++++++++++++++++++++++++++++- R/compositions.R | 97 +++++++++++ build/partial.rdb |binary inst/doc/UsingCompositions.pdf |binary man/clr2ilr.Rd | 32 ++- man/panelAcomp.Rd |only man/pwlr.Rd |only man/variation.Rd | 6 11 files changed, 478 insertions(+), 21 deletions(-)
Title: Parse Tools
Description: Tools and utilities for dealing with parse data.
Parse data represents the parse tree as data with location and type
information. This package provides functions for navigating the
parse tree as a data frame.
Author: Andrew Redd [aut, cre],
R Consortium [cph, fnd]
Maintainer: Andrew Redd <andrew.redd@hsc.utah.edu>
Diff between parsetools versions 0.1.2 dated 2020-03-01 and 0.1.3 dated 2020-04-08
DESCRIPTION | 6 - MD5 | 98 +++++++++++++------------- NEWS.md | 31 ++++---- R/accessors.R | 2 R/checks.R | 2 R/children.R | 2 R/comments.R | 2 R/family.R | 2 R/firstborn.R | 2 R/get_parse_data.R | 2 R/grouping.R | 2 R/iff_blocks.R | 2 R/parent.R | 2 R/pd_call.R | 2 R/pd_function.R | 2 R/pd_identify.R | 2 R/pd_if.R | 2 R/root.R | 2 R/siblings.R | 2 R/tags.R | 2 R/testing_blocks.R | 2 build/vignette.rds |binary inst/doc/Coding_Conventions.html | 4 - inst/examples/example.R | 2 man/all_root_nodes.Rd | 2 man/assignments.Rd | 2 man/calls.Rd | 2 man/extract_test_block.Rd | 2 man/family-nodes.Rd | 2 man/function-nodes.Rd | 2 man/get_family_pd.Rd | 2 man/get_parse_data.Rd | 2 man/if-statements.Rd | 2 man/iff-blocks.Rd | 2 man/internal.Rd | 2 man/pd_all_tagged_iff_block_ids.Rd | 2 man/pd_class_definitions.Rd | 2 man/pd_get_closest_call_id.Rd | 2 man/pd_get_comment_tag_content.Rd | 2 man/pd_get_iff_associated_name_id.Rd | 2 man/pd_get_relative_comment_associated_ids.Rd | 2 man/pd_get_tagged_comment_ids.Rd | 2 man/pd_has_tag.Rd | 2 man/pd_identify.Rd | 2 man/pd_is_comment.Rd | 2 man/pd_is_grouping.Rd | 2 man/pd_make_is_in_call.Rd | 2 man/pd_reconstitute.Rd | 2 man/root.Rd | 2 man/strip_doc_comment_leads.Rd | 2 50 files changed, 117 insertions(+), 112 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.5.2 dated 2019-05-10 and 0.5.3 dated 2020-04-08
DESCRIPTION | 12 - MD5 | 22 +- NEWS.md | 5 R/ms_list_voices.R | 3 R/ms_locales.R | 340 +++++++++++++++++++++++++++++++----------- R/ms_synthesize.R | 20 ++ README.md | 21 +- man/ms_create_ssml.Rd | 9 - man/ms_language_to_ms_name.Rd | 6 man/ms_locales.Rd | 4 man/ms_synthesize.Rd | 28 ++- tests/testthat/test-locales.R |only tests/testthat/test-regions.R |only 13 files changed, 344 insertions(+), 126 deletions(-)
Title: Tests in Linear Mixed Effects Models
Description: Provides p-values in type I, II or III anova and summary tables
for lmer model fits (cf. lme4) via Satterthwaite's degrees of freedom method. A
Kenward-Roger method is also available via the pbkrtest package. Model selection
methods include step, drop1 and anova-like tables for random effects (ranova).
Methods for Least-Square means (LS-means) and tests of linear contrasts of fixed
effects are also available.
Author: Alexandra Kuznetsova [aut],
Per Bruun Brockhoff [aut, ths],
Rune Haubo Bojesen Christensen [aut],
Sofie Pødenphant Jensen [ctb, cre]
Maintainer: Sofie Pødenphant Jensen <sofp@dtu.dk>
Diff between lmerTest versions 3.1-1 dated 2019-12-13 and 3.1-2 dated 2020-04-08
DESCRIPTION | 8 +-- MD5 | 82 +++++++++++++++++++-------------------- NEWS.md | 6 ++ R/anova_contrasts.R | 2 R/contest.R | 2 R/contrast_utils.R | 2 R/data_documentation.R | 2 R/drop1.R | 2 R/estimability.R | 2 R/legacy.R | 2 R/lmer.R | 4 - R/lmerTest.R | 2 R/lmer_anova.R | 2 R/lmer_summary.R | 2 R/ls_means.R | 2 R/ranova.R | 2 R/step.R | 2 R/terms_utils.R | 2 R/utils.R | 2 man/TVbo.Rd | 6 +- man/anova.lmerModLmerTest.Rd | 8 ++- man/carrots.Rd | 6 +- man/contest.lmerModLmerTest.Rd | 32 +++++++++++---- man/contest1D.lmerModLmerTest.Rd | 23 ++++++++-- man/contestMD.lmerModLmerTest.Rd | 19 +++++++-- man/drop1.lmerModLmerTest.Rd | 9 +++- man/get_model_matrix.Rd | 3 - man/ham.Rd | 6 +- man/is_estimable.Rd | 8 ++- man/legacy.Rd | 74 +++++++++++++++++++++++++---------- man/lmer.Rd | 38 ++++++++++-------- man/ls_means.lmerModLmerTest.Rd | 29 ++++++++++--- man/nullspace.Rd | 3 - man/plot.step_list.Rd | 13 ++++-- man/show_tests.Rd | 3 - man/show_tests.anova.Rd | 3 - man/show_tests.ls_means.Rd | 3 - man/single_anova.Rd | 7 ++- man/step.lmerModLmerTest.Rd | 13 ++++-- man/summary.lmerModLmerTest.Rd | 3 - tests/test_lmer.R | 18 ++++++-- tests/test_ranova_step.R | 4 + 42 files changed, 302 insertions(+), 159 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of
functions and use them to create shells (skeletons which must be
manually completed by the user) of test files to be tested with the
'testthat' package. Sort of like python 'doctests' for R.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Thomas Quinn [rev] (<https://orcid.org/0000-0003-0286-6329>),
Laurent Gatto [rev] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 1.5.2 dated 2019-11-05 and 1.6.0 dated 2020-04-08
exampletestr-1.5.2/exampletestr/inst/doc/one-function-at-a-time.R |only exampletestr-1.6.0/exampletestr/DESCRIPTION | 19 - exampletestr-1.6.0/exampletestr/MD5 | 48 +-- exampletestr-1.6.0/exampletestr/NEWS.md | 9 exampletestr-1.6.0/exampletestr/R/addins.R |only exampletestr-1.6.0/exampletestr/R/exemplar.R | 81 +++-- exampletestr-1.6.0/exampletestr/R/shell-creation.R | 97 +++++- exampletestr-1.6.0/exampletestr/R/utils.R | 38 +- exampletestr-1.6.0/exampletestr/build/vignette.rds |binary exampletestr-1.6.0/exampletestr/inst/WORDLIST | 5 exampletestr-1.6.0/exampletestr/inst/doc/one-file-at-a-time.R | 44 +- exampletestr-1.6.0/exampletestr/inst/doc/one-file-at-a-time.Rmd | 29 + exampletestr-1.6.0/exampletestr/inst/doc/one-file-at-a-time.html | 149 +++++----- exampletestr-1.6.0/exampletestr/inst/doc/one-function-at-a-time.Rmd | 110 +++++-- exampletestr-1.6.0/exampletestr/inst/doc/one-function-at-a-time.html | 149 +++++----- exampletestr-1.6.0/exampletestr/inst/doc/whole-package.R | 59 ++- exampletestr-1.6.0/exampletestr/inst/doc/whole-package.Rmd | 30 +- exampletestr-1.6.0/exampletestr/inst/doc/whole-package.html | 142 +++++---- exampletestr-1.6.0/exampletestr/inst/rstudio |only exampletestr-1.6.0/exampletestr/man/make-test-shells.Rd | 38 ++ exampletestr-1.6.0/exampletestr/tests/testthat/no-files-in-r-dir.txt |only exampletestr-1.6.0/exampletestr/tests/testthat/test-files.R | 48 +-- exampletestr-1.6.0/exampletestr/tests/testthat/test-functions.R | 52 ++- exampletestr-1.6.0/exampletestr/tests/testthat/test-shell-creation.R | 9 exampletestr-1.6.0/exampletestr/vignettes/one-file-at-a-time.Rmd | 29 + exampletestr-1.6.0/exampletestr/vignettes/one-function-at-a-time.Rmd | 110 +++++-- exampletestr-1.6.0/exampletestr/vignettes/whole-package.Rmd | 30 +- 27 files changed, 840 insertions(+), 485 deletions(-)
More information about dataframeexplorer at CRAN
Permanent link
Title: Expanded Replacement and Extension of the 'optim' Function
Description: Provides a replacement and extension of the optim()
function to call to several function minimization codes in R in a single
statement. These methods handle smooth, possibly box constrained functions
of several or many parameters. Note that function 'optimr()' was prepared to
simplify the incorporation of minimization codes going forward. Also implements some
utility codes and some extra solvers, including safeguarded Newton methods.
Many methods previously separate are now included here.
This is the version for CRAN.
Author: John C Nash [aut, cre],
Ravi Varadhan [aut],
Gabor Grothendieck [ctb]
Maintainer: John C Nash <nashjc@uottawa.ca>
Diff between optimx versions 2020-2.2 dated 2020-02-07 and 2020-4.2 dated 2020-04-08
optimx-2020-2.2/optimx/inst/doc/Extend-optimx-code.R |only optimx-2020-2.2/optimx/inst/doc/Extend-optimx.html |only optimx-2020-2.2/optimx/inst/doc/Rvmmin-code.R |only optimx-2020-2.2/optimx/inst/doc/SNewton-code.R |only optimx-2020-4.2/optimx/DESCRIPTION | 8 - optimx-2020-4.2/optimx/MD5 | 29 +--- optimx-2020-4.2/optimx/NEWS | 3 optimx-2020-4.2/optimx/R/ctrldefault.R | 1 optimx-2020-4.2/optimx/R/optimr.R | 76 +++++------ optimx-2020-4.2/optimx/build/vignette.rds |binary optimx-2020-4.2/optimx/inst/doc/Extend-optimx.pdf |only optimx-2020-4.2/optimx/inst/doc/Rvmmin.html | 92 ++++++------- optimx-2020-4.2/optimx/inst/doc/SNewton.R | 1 optimx-2020-4.2/optimx/inst/doc/SNewton.Rmd | 1 optimx-2020-4.2/optimx/inst/doc/SNewton.html | 130 +++++++++++-------- optimx-2020-4.2/optimx/man/opm.Rd | 4 optimx-2020-4.2/optimx/man/optimr.Rd | 3 optimx-2020-4.2/optimx/vignettes/SNewton.Rmd | 1 18 files changed, 195 insertions(+), 154 deletions(-)
Title: R Client for 'kintone' API
Description: Retrieve data from 'kintone' (<https://www.kintone.com/>) via its API.
'kintone' is an enterprise application platform.
Author: Hiroaki Yutani [aut, cre] (<https://orcid.org/0000-0002-3385-7233>)
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between kntnr versions 0.4.3 dated 2020-03-29 and 0.4.4 dated 2020-04-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/kntn_parse.R | 2 +- tests/testthat/test-parse-field.R | 15 ++++----------- 5 files changed, 16 insertions(+), 19 deletions(-)
Title: Client for 'Confluence' API
Description: Provides utilities for working with various 'Confluence' API
<https://docs.atlassian.com/ConfluenceServer/rest/latest/>, including a
functionality to convert an R Markdown document to 'Confluence' format and
upload it to 'Confluence' automatically.
Author: Hiroaki Yutani [aut, cre],
LINE Corporation [cph]
Maintainer: Hiroaki Yutani <hiroaki.yutani@linecorp.com>
Diff between conflr versions 0.1.0 dated 2020-03-16 and 0.1.1 dated 2020-04-08
conflr-0.1.0/conflr/inst/extdata/example.md |only conflr-0.1.0/conflr/inst/extdata/example.md_result_url |only conflr-0.1.0/conflr/inst/extdata/example_files |only conflr-0.1.1/conflr/DESCRIPTION | 9 +++-- conflr-0.1.1/conflr/MD5 | 17 ++++------- conflr-0.1.1/conflr/NEWS.md | 4 ++ conflr-0.1.1/conflr/tests/testthat/test-embed-images.R | 6 +++ conflr-0.1.1/conflr/tests/testthat/test-front-matter.R | 6 +++ conflr-0.1.1/conflr/tests/testthat/test-invalid-credential.R | 2 + conflr-0.1.1/conflr/tests/testthat/test-render.R | 4 ++ conflr-0.1.1/conflr/tests/testthat/test-toc.R | 4 ++ 11 files changed, 38 insertions(+), 14 deletions(-)
Title: Item Focussed Trees for the Identification of Items in
Differential Item Functioning
Description: Item focussed recursive partitioning for simultaneous selection of items and variables that induce Differential Item Functioning (DIF) in dichotomous or polytomous items.
Author: Moritz Berger
Maintainer: Moritz Berger <moritz.berger@imbie.uni-bonn.de>
Diff between DIFtree versions 3.1.4 dated 2019-01-02 and 3.1.5 dated 2020-04-08
DIFtree-3.1.4/DIFtree/R/DIFtree-internal.R |only DIFtree-3.1.5/DIFtree/DESCRIPTION | 10 +++++----- DIFtree-3.1.5/DIFtree/MD5 | 7 +++---- DIFtree-3.1.5/DIFtree/R/tree_PCM.R | 1 - DIFtree-3.1.5/DIFtree/man/DIFtree.Rd | 6 +++--- 5 files changed, 11 insertions(+), 13 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>),
Søren Højsgaard [aut],
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.6.0 dated 2020-03-12 and 0.6.1 dated 2020-04-08
DESCRIPTION | 16 - MD5 | 148 ++++++++-------- NAMESPACE | 2 NEWS.md | 21 ++ R/bootstrap_parameters.R | 2 R/check_multimodal.R | 2 R/convert_efa_to_cfa.R | 2 R/demean.R | 76 +++++--- R/dof.R | 2 R/extract_parameters.R | 43 +++- R/fish.R | 9 + R/model_parameters.BFBayesFactor.R | 6 R/model_parameters.BayesFM.R | 4 R/model_parameters.aov.R | 229 +++++++++++++++++++++---- R/model_parameters.bayesian.R | 15 - R/model_parameters_default.R | 2 R/model_parameters_mixed.R | 29 ++- R/p_value.R | 5 R/print.parameters_model.R | 13 + R/random_parameters.R | 2 R/reshape_loadings.R | 2 R/simulate_parameters.R | 2 R/standard_error.R | 5 R/utils.R | 10 + R/utils_model_parameters.R | 7 build/partial.rdb |binary build/vignette.rds |binary data/qol_cancer.RData |only inst/CITATION | 24 +- inst/WORDLIST | 15 + inst/doc/demean.R |only inst/doc/demean.Rmd |only inst/doc/demean.html |only inst/doc/efa_cfa.html | 80 ++++----- inst/doc/model_parameters.R | 8 inst/doc/model_parameters.Rmd | 27 +-- inst/doc/model_parameters.html | 247 ++++++++++++++-------------- inst/doc/model_parameters_robust.html | 150 ++++++++--------- inst/doc/model_parameters_standardized.html | 48 ++--- inst/doc/parameters_reduction.html | 46 ++--- inst/doc/parameters_selection.html | 32 +-- man/check_multimodal.Rd | 2 man/degrees_of_freedom.Rd | 2 man/demean.Rd | 62 ++++--- man/dot-compact_character.Rd | 22 +- man/dot-compact_list.Rd | 22 +- man/dot-data_frame.Rd | 22 +- man/dot-factor_to_dummy.Rd | 22 +- man/dot-factor_to_numeric.Rd | 22 +- man/dot-filter_component.Rd | 22 +- man/dot-find_most_common.Rd | 22 +- man/dot-flatten_list.Rd | 32 +-- man/dot-n_factors_bartlett.Rd | 22 +- man/dot-n_factors_bentler.Rd | 22 +- man/dot-n_factors_cng.Rd | 22 +- man/dot-n_factors_mreg.Rd | 22 +- man/dot-n_factors_scree.Rd | 22 +- man/dot-n_factors_sescree.Rd | 22 +- man/dot-recode_to_zero.Rd | 22 +- man/fish.Rd | 18 +- man/format_algorithm.Rd | 34 +-- man/format_model.Rd | 34 +-- man/model_parameters.aov.Rd | 133 +++++++++------ man/model_parameters.default.Rd | 2 man/model_parameters.gam.Rd | 2 man/model_parameters.merMod.Rd | 2 man/model_parameters.mlm.Rd | 2 man/model_parameters.rma.Rd | 4 man/model_parameters.stanreg.Rd | 231 +++++++++++++------------- man/model_parameters.zeroinfl.Rd | 2 man/qol_cancer.Rd |only man/reduce_parameters.Rd | 2 man/reexports.Rd | 32 +-- tests/testthat/test-model_parameters.aov.R | 105 ++++++----- tests/testthat/test-model_parameters_std.R | 84 +++++---- vignettes/bibliography.bib | 113 ++++++++++-- vignettes/demean.Rmd |only vignettes/model_parameters.Rmd | 27 +-- 78 files changed, 1490 insertions(+), 1074 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-12 dated 2020-01-10 and 1.4-13 dated 2020-04-08
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 4 ++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.R | 2 +- inst/doc/generalsiminf.Rnw | 2 +- inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary vignettes/generalsiminf.Rnw | 2 +- 12 files changed, 22 insertions(+), 18 deletions(-)
Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures
with quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Diff between qgcomp versions 2.2.2 dated 2020-03-01 and 2.3.0 dated 2020-04-08
DESCRIPTION | 17 - MD5 | 79 +++--- NAMESPACE | 3 NEWS.md | 10 R/base.R | 290 +++++++++++++++++------- R/base_experimental.R | 446 +++++++++++++++++-------------------- R/base_extensions.R |only R/base_samplesplits.R |only R/base_surv.R | 172 +++++++++++--- R/base_zi.R | 194 ++++++++++++---- R/utility.R | 66 ++++- inst/doc/qgcomp-vignette.R | 73 +++++- inst/doc/qgcomp-vignette.Rmd | 187 +++++++++------ inst/doc/qgcomp-vignette.html | 395 ++++++++++++++++++++------------ man/checknames.Rd | 2 man/coxmsm.fit.Rd | 7 man/glance.qgcompfit.Rd | 2 man/mice.impute.leftcenslognorm.Rd | 6 man/modelbound.boot.Rd | 4 man/msm.fit.Rd | 7 man/msm.predict.Rd | 2 man/plot.qgcompfit.Rd | 3 man/pointwisebound.boot.Rd | 7 man/pointwisebound.noboot.Rd | 2 man/predict.qgcompfit.Rd | 2 man/print.qgcompfit.Rd | 6 man/qgcomp.Rd | 18 - man/qgcomp.boot.Rd | 40 ++- man/qgcomp.cox.boot.Rd | 22 + man/qgcomp.cox.noboot.Rd | 15 - man/qgcomp.noboot.Rd | 16 + man/qgcomp.partials.Rd |only man/qgcomp.zi.boot.Rd | 29 ++ man/qgcomp.zi.noboot.Rd | 23 + man/quantize.Rd | 4 man/se_comb.Rd | 2 man/tidy.qgcompfit.Rd | 4 man/vc_comb.Rd | 2 man/zimsm.fit.Rd | 4 man/zimsm.fit.control.Rd | 2 tests/test_zzzplots.R | 28 +- vignettes/qgcomp-vignette.Rmd | 187 +++++++++------ 42 files changed, 1562 insertions(+), 816 deletions(-)
Title: Metodos De Estimacion Con Disenio Probabilistico y Estratificado
en Encuesta CASEN (Estimation Methods with Probabilistic
Stratified Sampling in CASEN Survey)
Description: Funciones para realizar estadistica descriptiva e inferencia con el
disenio complejo de la Encuesta CASEN (Encuesta de Caracterizacion
Socio-Economica). Incluye datasets que permiten armonizar los codigos de
comunas que cambian entre anios y permite convertir a los codigos oficiales de
SUBDERE.
(Functions to compute descriptive and inferential statistics with CASEN
Survey [Socio-Economic Characterization Survey] complex design. Includes
datasets to harmonize commune codes that change across years and allows to
convert to official SUBDERE codes.)
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Ricardo Aravena [ths],
Klaus Lehmann [ctb] (Revision de las primeras versiones del software),
Kirill Muller [ctb] (Actualizacion para la compatibilidad con tibble
v3.0),
Pontificia Universidad Catolica de Chile [cph],
Ministerio de Desarrollo Social (MDS) [dtc],
Subsecretaria de Desarrollo Regional (SUBDERE) [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between casen versions 0.1.3 dated 2020-03-20 and 0.1.4 dated 2020-04-08
DESCRIPTION | 26 ++++--- MD5 | 28 ++++--- NEWS.md |only R/descriptive_statistics.R | 10 +- R/download_casen.R | 4 - R/internals.R | 11 ++- build/vignette.rds |binary inst/doc/basic-usage.html | 97 ++++++++++++++++----------- man/check_input.Rd | 2 man/check_nas.Rd | 3 man/clean_data.Rd | 3 man/create_design.Rd | 3 man/mean_median.Rd | 3 man/unique_groups.Rd | 3 tests/testthat/agrupada.txt |only tests/testthat/test-descriptive_statistics.R | 21 +---- 16 files changed, 131 insertions(+), 83 deletions(-)
Title: Interface to the Search API for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based
search API (<http://api.plos.org/>) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing 'faceted' searches,
'highlight' searches, and viewing results of 'highlighted'
searches in a browser.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rplos versions 0.8.6 dated 2019-05-03 and 0.9.0 dated 2020-04-08
rplos-0.8.6/rplos/inst/doc/rplos_vignette.Rmd |only rplos-0.8.6/rplos/inst/doc/rplos_vignette.html |only rplos-0.8.6/rplos/inst/vign |only rplos-0.8.6/rplos/tests/fixtures/vcr_cassettes |only rplos-0.8.6/rplos/tools/highbrow.png |only rplos-0.8.6/rplos/vignettes/rplos_vignette.Rmd |only rplos-0.9.0/rplos/DESCRIPTION | 11 rplos-0.9.0/rplos/LICENSE | 2 rplos-0.9.0/rplos/MD5 | 140 +- rplos-0.9.0/rplos/NEWS.md | 10 rplos-0.9.0/rplos/R/plosabstract.R | 6 rplos-0.9.0/rplos/R/plosauthor.R | 5 rplos-0.9.0/rplos/R/plosfigtabcaps.R | 4 rplos-0.9.0/rplos/R/plossubject.R | 4 rplos-0.9.0/rplos/R/plostitle.R | 4 rplos-0.9.0/rplos/R/searchplos.R | 12 rplos-0.9.0/rplos/README.md | 234 +-- rplos-0.9.0/rplos/build/vignette.rds |binary rplos-0.9.0/rplos/inst/doc/facethighlight.Rmd | 76 - rplos-0.9.0/rplos/inst/doc/facethighlight.html | 629 +++++----- rplos-0.9.0/rplos/inst/doc/fulltext.Rmd | 74 - rplos-0.9.0/rplos/inst/doc/fulltext.html | 627 +++++---- rplos-0.9.0/rplos/inst/doc/rplos.Rmd |only rplos-0.9.0/rplos/inst/doc/rplos.html |only rplos-0.9.0/rplos/man/facetplos.Rd | 48 rplos-0.9.0/rplos/man/figures |only rplos-0.9.0/rplos/man/highplos.Rd | 58 rplos-0.9.0/rplos/man/plosabstract.Rd | 21 rplos-0.9.0/rplos/man/plosauthor.Rd | 21 rplos-0.9.0/rplos/man/plosfigtabcaps.Rd | 21 rplos-0.9.0/rplos/man/plossubject.Rd | 21 rplos-0.9.0/rplos/man/plostitle.Rd | 21 rplos-0.9.0/rplos/man/plosviews.Rd | 3 rplos-0.9.0/rplos/man/searchplos.Rd | 21 rplos-0.9.0/rplos/tests/fixtures/facetplos-failswell.yml |only rplos-0.9.0/rplos/tests/fixtures/facetplos.yml |only rplos-0.9.0/rplos/tests/fixtures/full_text_urls-with-searchplos.yml |only rplos-0.9.0/rplos/tests/fixtures/full_text_urls-with-searchplos2.yml |only rplos-0.9.0/rplos/tests/fixtures/full_text_urls_all_journals.yml |only rplos-0.9.0/rplos/tests/fixtures/highbrow.yml |only rplos-0.9.0/rplos/tests/fixtures/highplos.yml |only rplos-0.9.0/rplos/tests/fixtures/highplos_errors.yml |only rplos-0.9.0/rplos/tests/fixtures/journalnamekey1.yml |only rplos-0.9.0/rplos/tests/fixtures/journalnamekey2.yml |only rplos-0.9.0/rplos/tests/fixtures/journalnamekey3.yml |only rplos-0.9.0/rplos/tests/fixtures/plosabstract.yml |only rplos-0.9.0/rplos/tests/fixtures/plosabstract_class.yml |only rplos-0.9.0/rplos/tests/fixtures/plosauthor_cols.yml |only rplos-0.9.0/rplos/tests/fixtures/plosauthor_dims.yml |only rplos-0.9.0/rplos/tests/fixtures/plosfigtabcaps.yml |only rplos-0.9.0/rplos/tests/fixtures/plossubject.yml |only rplos-0.9.0/rplos/tests/fixtures/plostitle.yml |only rplos-0.9.0/rplos/tests/fixtures/plostitle_class.yml |only rplos-0.9.0/rplos/tests/fixtures/plosviews_class.yml |only rplos-0.9.0/rplos/tests/fixtures/plosviews_values.yml |only rplos-0.9.0/rplos/tests/fixtures/plosword1.yml |only rplos-0.9.0/rplos/tests/fixtures/plosword2.yml |only rplos-0.9.0/rplos/tests/fixtures/plot_throughtime.yml |only rplos-0.9.0/rplos/tests/fixtures/searchplos.yml |only rplos-0.9.0/rplos/tests/fixtures/searchplos_large_numbers.yml |only rplos-0.9.0/rplos/tests/testthat/helper-rplos.R | 2 rplos-0.9.0/rplos/tests/testthat/test-crossref.R | 4 rplos-0.9.0/rplos/tests/testthat/test-fulltext.R | 36 rplos-0.9.0/rplos/tests/testthat/test-searchplos.R | 2 rplos-0.9.0/rplos/tools/unnamed-chunk-21-1.png |binary rplos-0.9.0/rplos/vignettes/facethighlight.Rmd | 76 - rplos-0.9.0/rplos/vignettes/facethighlight.Rmd.og |only rplos-0.9.0/rplos/vignettes/fulltext.Rmd | 74 - rplos-0.9.0/rplos/vignettes/fulltext.Rmd.og |only rplos-0.9.0/rplos/vignettes/rplos.Rmd |only rplos-0.9.0/rplos/vignettes/rplos.Rmd.og |only 71 files changed, 1287 insertions(+), 980 deletions(-)
Title: Create Reports Using R and 'asciidoc'
Description: Inspired by Karl Broman`s reader on using 'knitr'
with 'asciidoc'
(<http://kbroman.org/knitr_knutshell/pages/asciidoc.html>), this is
merely a wrapper to 'knitr' and 'asciidoc'.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between rasciidoc versions 2.0.1 dated 2019-12-18 and 2.1.0 dated 2020-04-08
rasciidoc-2.0.1/rasciidoc/inst/doc/An_Introduction_to_rasciidoc.Rmd |only rasciidoc-2.0.1/rasciidoc/vignettes/An_Introduction_to_rasciidoc.Rmd |only rasciidoc-2.1.0/rasciidoc/DESCRIPTION | 19 rasciidoc-2.1.0/rasciidoc/LICENSE | 2 rasciidoc-2.1.0/rasciidoc/MD5 | 30 rasciidoc-2.1.0/rasciidoc/NEWS.md | 8 rasciidoc-2.1.0/rasciidoc/R/internals.R |only rasciidoc-2.1.0/rasciidoc/R/render.R | 137 rasciidoc-2.1.0/rasciidoc/R/zzz.R |only rasciidoc-2.1.0/rasciidoc/build/vignette.rds |binary rasciidoc-2.1.0/rasciidoc/inst/doc/An_Introduction_to_rasciidoc.R | 23 rasciidoc-2.1.0/rasciidoc/inst/doc/An_Introduction_to_rasciidoc.Rasciidoc |only rasciidoc-2.1.0/rasciidoc/inst/doc/An_Introduction_to_rasciidoc.html | 1562 +++++++--- rasciidoc-2.1.0/rasciidoc/inst/files/simple/knit.Rasciidoc | 8 rasciidoc-2.1.0/rasciidoc/man/rasciidoc-package.Rd | 3 rasciidoc-2.1.0/rasciidoc/man/rasciidoc.Rd | 4 rasciidoc-2.1.0/rasciidoc/man/render.Rd | 8 rasciidoc-2.1.0/rasciidoc/tests/runit.R | 23 rasciidoc-2.1.0/rasciidoc/vignettes/An_Introduction_to_rasciidoc.Rasciidoc |only 19 files changed, 1407 insertions(+), 420 deletions(-)