Title: Utility Functions for Developing Web Applications
Description: Parses http request data in application/json, multipart/form-data,
or application/x-www-form-urlencoded format. Includes example of hosting
and parsing html form data in R using either 'httpuv' or 'Rhttpd'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between webutils versions 1.0 dated 2019-08-21 and 1.1 dated 2020-04-28
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 3 +++ R/get_boundary.R | 6 ++++-- R/parse_http.R | 2 +- man/demo_httpuv.Rd | 3 ++- man/demo_rhttpd.Rd | 3 ++- 7 files changed, 22 insertions(+), 15 deletions(-)
Title: Additions and Extensions of the 'VGAM' Package
Description: Extending the functionalities of the 'VGAM' package with
additional functions and datasets. At present, 'VGAMextra'
comprises new family functions (ffs) to estimate several time
series models by maximum likelihood using Fisher scoring,
unlike popular packages in CRAN relying on optim(), including
ARMA-GARCH-like models, the Order-(p, d, q) ARIMAX model (non-
seasonal), the Order-(p) VAR model, error correction models
for cointegrated time series, and ARMA-structures with Student-t
errors. For independent data, new ffs to estimate the inverse-
Weibull, the inverse-gamma, the generalized beta of the second
kind and the general multivariate normal distributions are
available. In addition, 'VGAMextra' incorporates new VGLM-links
for the mean-function, and the quantile-function (as an alternative
to ordinary quantile modelling) of several 1-parameter distributions,
that are compatible with the class of VGLM/VGAM family functions.
Currently, only fixed-effects models are implemented. All functions
are subject to change; see the NEWS for further details on the
latest changes.
Author: Victor Miranda [aut, cre, cph],
Thomas Yee [ctb, ths, cph]
Maintainer: Victor Miranda <v.miranda@auckland.ac.nz>
Diff between VGAMextra versions 0.0-1 dated 2018-06-27 and 0.0-2 dated 2020-04-28
VGAMextra-0.0-1/VGAMextra/R/is.FormulaAR.R |only VGAMextra-0.0-1/VGAMextra/R/trinormal.R |only VGAMextra-0.0-2/VGAMextra/DESCRIPTION | 10 VGAMextra-0.0-2/VGAMextra/MD5 | 170 ++++++------- VGAMextra-0.0-2/VGAMextra/NAMESPACE | 24 + VGAMextra-0.0-2/VGAMextra/NEWS | 15 - VGAMextra-0.0-2/VGAMextra/R/1ParamMeanlinksCont.R | 25 - VGAMextra-0.0-2/VGAMextra/R/1ParamMeanlinksDiscrete.R | 32 +- VGAMextra-0.0-2/VGAMextra/R/2ParamMeanlinks.R | 8 VGAMextra-0.0-2/VGAMextra/R/AR.studentt.ff.R | 10 VGAMextra-0.0-2/VGAMextra/R/ARIMAX.errors.ff.R | 15 - VGAMextra-0.0-2/VGAMextra/R/ARMA.studentt.ff.R | 14 - VGAMextra-0.0-2/VGAMextra/R/ECMEngleGran.R | 9 VGAMextra-0.0-2/VGAMextra/R/InfoAttach.R | 9 VGAMextra-0.0-2/VGAMextra/R/Is.Numeric.R | 5 VGAMextra-0.0-2/VGAMextra/R/KPSS.test.R | 5 VGAMextra-0.0-2/VGAMextra/R/MVNcov.R | 10 VGAMextra-0.0-2/VGAMextra/R/PIT.plots.R | 6 VGAMextra-0.0-2/VGAMextra/R/Q.reg.R | 5 VGAMextra-0.0-2/VGAMextra/R/TSfamilyARIMAX.R | 13 VGAMextra-0.0-2/VGAMextra/R/TSfamilyARMAX.R | 18 - VGAMextra-0.0-2/VGAMextra/R/TSfamilyARXff.ARMA.GARCH.R | 53 ++-- VGAMextra-0.0-2/VGAMextra/R/TSfamilyLog.R | 9 VGAMextra-0.0-2/VGAMextra/R/TSfamilyMAX.R | 14 - VGAMextra-0.0-2/VGAMextra/R/TSfamilyNegBin.R | 14 - VGAMextra-0.0-2/VGAMextra/R/TSfamilyPoisson.R | 22 - VGAMextra-0.0-2/VGAMextra/R/TSfamilyVGLM.INGARCH.R | 24 + VGAMextra-0.0-2/VGAMextra/R/TSfamilyYulesimon.R | 9 VGAMextra-0.0-2/VGAMextra/R/VARff.R | 10 VGAMextra-0.0-2/VGAMextra/R/WN.InitARMA.R | 5 VGAMextra-0.0-2/VGAMextra/R/break.VGAMextra.R | 21 + VGAMextra-0.0-2/VGAMextra/R/checkTS.VGAMextra.R | 5 VGAMextra-0.0-2/VGAMextra/R/checkTS.ffs.R | 5 VGAMextra-0.0-2/VGAMextra/R/cm.ARMA.R | 11 VGAMextra-0.0-2/VGAMextra/R/contsDistQlinks.R | 159 +++++++----- VGAMextra-0.0-2/VGAMextra/R/cross.gammas.R | 6 VGAMextra-0.0-2/VGAMextra/R/dpqr.genbetaII.R | 5 VGAMextra-0.0-2/VGAMextra/R/dpqr.invchisq.R | 5 VGAMextra-0.0-2/VGAMextra/R/dpqr.invgamma.R | 4 VGAMextra-0.0-2/VGAMextra/R/dpqr.invweibull.R | 6 VGAMextra-0.0-2/VGAMextra/R/expQlink.R | 31 +- VGAMextra-0.0-2/VGAMextra/R/extract.Residuals.R | 7 VGAMextra-0.0-2/VGAMextra/R/extractXLM.R | 5 VGAMextra-0.0-2/VGAMextra/R/familyAR1TS.R | 13 VGAMextra-0.0-2/VGAMextra/R/gamma1Qlink.R | 48 ++- VGAMextra-0.0-2/VGAMextra/R/gammaRMean.R | 9 VGAMextra-0.0-2/VGAMextra/R/gen.betaIImr.R | 17 - VGAMextra-0.0-2/VGAMextra/R/inv.chisqff.R | 12 VGAMextra-0.0-2/VGAMextra/R/invgamma2mr.R | 13 VGAMextra-0.0-2/VGAMextra/R/invweibull2mr.R | 13 VGAMextra-0.0-2/VGAMextra/R/isNAinspectVGx.R | 5 VGAMextra-0.0-2/VGAMextra/R/maxwellQlink.R | 35 +- VGAMextra-0.0-2/VGAMextra/R/newtonRaphson.basic.R | 5 VGAMextra-0.0-2/VGAMextra/R/normal1MeanQlink.R |only VGAMextra-0.0-2/VGAMextra/R/normal1Meanff.R |only VGAMextra-0.0-2/VGAMextra/R/normal1sdQlink.R | 14 - VGAMextra-0.0-2/VGAMextra/R/normal1sdff.R | 16 - VGAMextra-0.0-2/VGAMextra/R/normalQlink.R |only VGAMextra-0.0-2/VGAMextra/R/rAR.GARCH.R | 5 VGAMextra-0.0-2/VGAMextra/R/summaryS4VGAMextra.R | 6 VGAMextra-0.0-2/VGAMextra/R/trinormalCovff.R |only VGAMextra-0.0-2/VGAMextra/R/uninormalMod.R |only VGAMextra-0.0-2/VGAMextra/data/HKdata.rda |binary VGAMextra-0.0-2/VGAMextra/data/ap.mx.rda |binary VGAMextra-0.0-2/VGAMextra/inst/doc/sceneVGAMextra.txt | 4 VGAMextra-0.0-2/VGAMextra/man/ARIMAX.errors.ff.Rd | 2 VGAMextra-0.0-2/VGAMextra/man/ARIMAXff.Rd | 6 VGAMextra-0.0-2/VGAMextra/man/ARMA.studentt.ff.Rd | 4 VGAMextra-0.0-2/VGAMextra/man/ARXff.Rd | 9 VGAMextra-0.0-2/VGAMextra/man/ECM.EngleGran.Rd | 6 VGAMextra-0.0-2/VGAMextra/man/MAXff.Rd | 4 VGAMextra-0.0-2/VGAMextra/man/MVNcov.Rd | 2 VGAMextra-0.0-2/VGAMextra/man/VARff.Rd | 2 VGAMextra-0.0-2/VGAMextra/man/VGAMextra-package.Rd | 2 VGAMextra-0.0-2/VGAMextra/man/borel.tannerMeanlink.Rd | 12 VGAMextra-0.0-2/VGAMextra/man/break.VGAMextra.Rd | 8 VGAMextra-0.0-2/VGAMextra/man/cm.ARMA.Rd | 18 - VGAMextra-0.0-2/VGAMextra/man/gammaRMean.Rd | 10 VGAMextra-0.0-2/VGAMextra/man/gen.betaIImr.Rd | 8 VGAMextra-0.0-2/VGAMextra/man/geometricffMeanlink.Rd | 16 - VGAMextra-0.0-2/VGAMextra/man/inv.chisqff.Rd | 8 VGAMextra-0.0-2/VGAMextra/man/invgamma2mr.Rd | 8 VGAMextra-0.0-2/VGAMextra/man/invweibull2mr.Rd | 8 VGAMextra-0.0-2/VGAMextra/man/logffMeanlink.Rd | 19 - VGAMextra-0.0-2/VGAMextra/man/normal1sd.Rd | 6 VGAMextra-0.0-2/VGAMextra/man/notDocumentedYetVGAMextra.Rd | 15 - VGAMextra-0.0-2/VGAMextra/man/toppleMeanlink.Rd | 13 VGAMextra-0.0-2/VGAMextra/man/trinormalCovff.Rd |only VGAMextra-0.0-2/VGAMextra/man/yulesimonMeanlink.Rd | 4 VGAMextra-0.0-2/VGAMextra/man/zetaffMeanlink.Rd | 6 90 files changed, 722 insertions(+), 522 deletions(-)
Title: Sensitivity Analysis Tools for Regression Models
Description: Implements a suite of sensitivity analysis tools
that extends the traditional omitted variable bias framework and makes it easier
to understand the impact of omitted variables in regression models, as discussed in Cinelli, C. and Hazlett, C. (2020), "Making Sense of Sensitivity: Extending Omitted Variable Bias." Journal of the Royal Statistical Society, Series B (Statistical Methodology) <doi:10.1111/rssb.12348>.
Author: Carlos Cinelli [aut, cre],
Jeremy Ferwerda [aut],
Chad Hazlett [aut],
Aaron Rudkin [ctb]
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between sensemakr versions 0.1.2 dated 2019-08-05 and 0.1.3 dated 2020-04-28
sensemakr-0.1.2/sensemakr/man/figures/figures-unnamed-chunk-3-1.png |only sensemakr-0.1.2/sensemakr/man/figures/figures-unnamed-chunk-3-2.png |only sensemakr-0.1.2/sensemakr/man/figures/figures-unnamed-chunk-3-3.png |only sensemakr-0.1.2/sensemakr/tools |only sensemakr-0.1.3/sensemakr/DESCRIPTION | 20 sensemakr-0.1.3/sensemakr/MD5 | 94 + sensemakr-0.1.3/sensemakr/NAMESPACE | 16 sensemakr-0.1.3/sensemakr/R/bias_functions.R | 165 ++- sensemakr-0.1.3/sensemakr/R/data.R | 97 + sensemakr-0.1.3/sensemakr/R/other.R |only sensemakr-0.1.3/sensemakr/R/ovb_bounds.R | 346 ++++--- sensemakr-0.1.3/sensemakr/R/ovb_plots.R | 494 ++++++---- sensemakr-0.1.3/sensemakr/R/print.R | 280 +++++ sensemakr-0.1.3/sensemakr/R/sensemakr.R | 121 ++ sensemakr-0.1.3/sensemakr/R/sensitivity_stats.R | 117 +- sensemakr-0.1.3/sensemakr/R/zzz.R | 3 sensemakr-0.1.3/sensemakr/build |only sensemakr-0.1.3/sensemakr/data/colombia.rda |only sensemakr-0.1.3/sensemakr/inst/doc |only sensemakr-0.1.3/sensemakr/man/add_bound_to_contour.Rd | 59 - sensemakr-0.1.3/sensemakr/man/adjusted_estimate.Rd | 58 - sensemakr-0.1.3/sensemakr/man/colombia.Rd |only sensemakr-0.1.3/sensemakr/man/darfur.Rd | 10 sensemakr-0.1.3/sensemakr/man/figures/figures-basic-usage-1.png |only sensemakr-0.1.3/sensemakr/man/figures/figures-basic-usage-2.png |only sensemakr-0.1.3/sensemakr/man/figures/figures-basic-usage-3.png |only sensemakr-0.1.3/sensemakr/man/figures/sensemakr-logo-small.png |only sensemakr-0.1.3/sensemakr/man/figures/sensemakr-logo.png |only sensemakr-0.1.3/sensemakr/man/figures/sensemakr-logo.psd |only sensemakr-0.1.3/sensemakr/man/group_partial_r2.Rd | 3 sensemakr-0.1.3/sensemakr/man/model_helper.Rd |only sensemakr-0.1.3/sensemakr/man/ovb_bounds.Rd | 97 + sensemakr-0.1.3/sensemakr/man/ovb_contour_plot.Rd | 133 ++ sensemakr-0.1.3/sensemakr/man/ovb_extreme_plot.Rd | 88 + sensemakr-0.1.3/sensemakr/man/partial_r2.Rd | 4 sensemakr-0.1.3/sensemakr/man/print.sensemakr.Rd | 27 sensemakr-0.1.3/sensemakr/man/resid_maker.Rd |only sensemakr-0.1.3/sensemakr/man/robustness_value.Rd | 12 sensemakr-0.1.3/sensemakr/man/sensemakr-package.Rd | 6 sensemakr-0.1.3/sensemakr/man/sensemakr.Rd | 77 + sensemakr-0.1.3/sensemakr/man/sensitivity_stats.Rd | 22 sensemakr-0.1.3/sensemakr/tests/testthat/Rplots.pdf |binary sensemakr-0.1.3/sensemakr/tests/testthat/test-01-manual-tests.R | 77 + sensemakr-0.1.3/sensemakr/tests/testthat/test-02-darfur.R | 126 +- sensemakr-0.1.3/sensemakr/tests/testthat/test-03-contour.R | 54 - sensemakr-0.1.3/sensemakr/tests/testthat/test-04-extreme.R | 29 sensemakr-0.1.3/sensemakr/tests/testthat/test-05-robustness_value.R | 6 sensemakr-0.1.3/sensemakr/tests/testthat/test-06-misc.R | 2 sensemakr-0.1.3/sensemakr/tests/testthat/test-07-bounds.R |only sensemakr-0.1.3/sensemakr/tests/testthat/test-08-bias_functions.R |only sensemakr-0.1.3/sensemakr/tests/testthat/test-09-plots.R |only sensemakr-0.1.3/sensemakr/tests/testthat/test-10-rv-xrv.R |only sensemakr-0.1.3/sensemakr/tests/testthat/test-11-print.R |only sensemakr-0.1.3/sensemakr/tests/testthat/test-12-reduce.R |only sensemakr-0.1.3/sensemakr/vignettes |only 55 files changed, 1982 insertions(+), 661 deletions(-)
Title: Waveband Definitions for UV, VIS, and IR Radiation
Description: Constructors of waveband objects for commonly used biological
spectral weighting functions (BSWFs) and for different wavebands describing
named ranges of wavelengths in the ultraviolet (UV), visible (VIS)
and infrared (IR) regions of the electromagnetic spectrum. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyWavebands versions 0.4.3 dated 2019-03-28 and 0.4.4 dated 2020-04-28
DESCRIPTION | 14 +- MD5 | 114 ++++++++++++----------- NAMESPACE | 1 NEWS | 6 + R/ndvi.r |only R/photobiologyWavebands.R | 4 README.md | 117 +++++++++++++++++++++++- build/vignette.rds |binary inst/doc/user-guide.R | 32 +++--- inst/doc/user-guide.html | 168 ++++++++++++++++++----------------- man/Blue.Rd | 19 ++- man/CH4.Rd | 17 ++- man/CH4_e_fun.Rd | 18 ++- man/CH4_q_fun.Rd | 18 ++- man/CIE.Rd | 17 ++- man/CIE1924_lef.spct.Rd | 4 man/CIE1951_scotopic_lef.spct.Rd | 4 man/CIE2008_lef2deg.spct.Rd | 4 man/CIE_e_fun.Rd | 18 ++- man/CIE_q_fun.Rd | 18 ++- man/DNA_GM.Rd | 17 ++- man/DNA_GM_q_fun.Rd | 18 ++- man/DNA_N.Rd | 17 ++- man/DNA_P.Rd | 17 ++- man/DNA_P_q_fun.Rd | 18 ++- man/FLAV.Rd | 17 ++- man/FLAV_q_fun.Rd | 18 ++- man/Far_red.Rd | 19 ++- man/GEN_G.Rd | 17 ++- man/GEN_G_q_fun.Rd | 18 ++- man/GEN_M.Rd | 17 ++- man/GEN_M_q_fun.Rd | 18 ++- man/GEN_T.Rd | 17 ++- man/GEN_T_q_fun.Rd | 18 ++- man/Green.Rd | 19 ++- man/ICNIRP.Rd | 17 ++- man/ICNIRP_e_fun.Rd | 18 ++- man/IR.Rd | 19 ++- man/IR_bands.Rd | 8 + man/Landsat_bands.Rd | 8 + man/NDVI.Rd |only man/Orange.Rd | 19 ++- man/PG.Rd | 17 ++- man/PG_q_fun.Rd | 18 ++- man/Plant_bands.Rd | 8 + man/Purple.Rd | 19 ++- man/Red.Rd | 19 ++- man/SetlowTUV.spct.Rd | 4 man/UV.Rd | 19 ++- man/UVA.Rd | 19 ++- man/UVB.Rd | 19 ++- man/UVC.Rd | 19 ++- man/UV_bands.Rd | 8 + man/VIS.Rd | 19 ++- man/VIS_bands.Rd | 8 + man/Yellow.Rd | 19 ++- man/photobiologyWavebands-package.Rd | 10 +- man/photopic_sensitivity.Rd | 4 man/scotopic_sensitivity.Rd | 4 59 files changed, 770 insertions(+), 410 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Three-Way Correspondence Analysis Variants
Description: Provides four variants of three-way correspondence analysis (ca):
three-way symmetrical ca, three-way non-symmetrical ca, three-way ordered symmetrical ca
and three-way ordered non-symmetrical ca.
Author: Rosaria Lombardo, Eric J Beh and Michel van de Velden
Maintainer: Rosaria Lombardo <rosaria.lombardo@unicampania.it>
Diff between CA3variants versions 2.0 dated 2019-08-01 and 2.5 dated 2020-04-28
CA3variants-2.0/CA3variants/R/graph2poly.R |only CA3variants-2.0/CA3variants/man/graph2poly.Rd |only CA3variants-2.5/CA3variants/DESCRIPTION | 11 +- CA3variants-2.5/CA3variants/MD5 | 30 +++--- CA3variants-2.5/CA3variants/NAMESPACE | 17 +++ CA3variants-2.5/CA3variants/R/CA3variants.R | 23 ++-- CA3variants-2.5/CA3variants/R/ca3plot.R |only CA3variants-2.5/CA3variants/R/caplot3d.R |only CA3variants-2.5/CA3variants/R/nsca3basic.R | 2 CA3variants-2.5/CA3variants/R/plot.CA3variants.R | 99 ++++++++++---------- CA3variants-2.5/CA3variants/R/print.CA3variants.R | 26 ++--- CA3variants-2.5/CA3variants/R/tau3.R | 6 - CA3variants-2.5/CA3variants/R/tunelocal.R | 51 +++++----- CA3variants-2.5/CA3variants/data/happy.rda |binary CA3variants-2.5/CA3variants/data/olive.rda |binary CA3variants-2.5/CA3variants/man/ca3plot.Rd |only CA3variants-2.5/CA3variants/man/caplot3d.Rd |only CA3variants-2.5/CA3variants/man/plot.CA3variants.Rd | 34 +++--- CA3variants-2.5/CA3variants/man/tunelocal.Rd | 4 19 files changed, 164 insertions(+), 139 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-22 1.0-2.1
2016-05-16 1.0-2
2016-05-12 1.0-1
2015-02-06 0.4-31
2013-12-19 0.4-28
2013-04-30 0.4-22
2012-11-27 0.4-19
Title: Calculates Disproportionate Impact When Binary Success Data are
Disaggregated by Subgroups
Description: Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index.
California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <https://www.cccco.edu/-/media/CCCCO-Website/About-Us/Divisions/Digital-Innovation-and-Infrastructure/Research/Files/PercentagePointGapMethod2017.ashx>.
California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <https://www.cccco.edu/-/media/CCCCO-Website/About-Us/Divisions/Digital-Innovation-and-Infrastructure/Network-Operations/Accountability/Files/GUIDELINES-FOR-MEASURING-DISPROPORTIONATE-IMPACT-IN-EQUITY-PLANS.ashx>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>
Diff between DisImpact versions 0.0.7 dated 2020-04-03 and 0.0.8 dated 2020-04-28
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/percentage_point_gap.R | 1 + inst/doc/Tutorial.html | 34 ++++++++++++++++++++-------------- man/di_ppg.Rd | 15 ++++++++++++--- man/di_ppg_iterate.Rd | 15 ++++++++++++--- man/ppg_moe.Rd | 3 +-- man/student_equity.Rd | 4 +++- 9 files changed, 65 insertions(+), 35 deletions(-)
Title: Working Examples for Reproducible Research Documents
Description: Templates, guides, and scripts for
writing documents in 'LaTeX' and 'R markdown' to produce
guides, slides, and reports. Special care is taken to
illustrate use of templates and customization opportunities.
Challenges and opportunities of 'HTML' output from 'R markdown'
receive special attention. Includes several vignettes
to assist new users of literate programming.
Author: Paul Johnson [aut, cre],
Brent Kaplan [ctb],
Meghan Sullivan [ctb],
Charles Redmon [ctb],
Zack Roman [ctb],
Chong Xing [ctb],
Longcan 'Emma' Huang [ctb],
Garrett Mills [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between stationery versions 0.98.24 dated 2019-11-16 and 0.98.30 dated 2020-04-28
DESCRIPTION | 10 +- MD5 | 24 ++--- inst/doc/HTML_special_features.html | 146 +++++++++++++++++------------------- inst/doc/Rmarkdown.pdf |binary inst/doc/code_chunks.pdf |binary inst/doc/stationery.pdf |binary man/blankPDF.Rd | 10 +- man/blankPNG.Rd | 10 +- man/getFiles.Rd | 10 +- man/initWriteup.Rd | 2 man/rmd2html.Rd | 11 ++ man/rmd2pdf.Rd | 11 ++ man/rnw2pdf.Rd | 18 +++- 13 files changed, 144 insertions(+), 108 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.5 dated 2020-01-16 and 0.3.6 dated 2020-04-28
ggspectra-0.3.5/ggspectra/R/geom-spct.R |only ggspectra-0.3.5/ggspectra/R/ggspectra.R |only ggspectra-0.3.5/ggspectra/R/multiplot.R |only ggspectra-0.3.6/ggspectra/DESCRIPTION | 26 ggspectra-0.3.6/ggspectra/MD5 | 190 - ggspectra-0.3.6/ggspectra/NAMESPACE | 6 ggspectra-0.3.6/ggspectra/NEWS | 21 ggspectra-0.3.6/ggspectra/R/autoplot-calibration-spct.R | 16 ggspectra-0.3.6/ggspectra/R/autoplot-cps-spct.r | 18 ggspectra-0.3.6/ggspectra/R/autoplot-filter-spct.r | 236 + ggspectra-0.3.6/ggspectra/R/autoplot-raw-spct.r | 28 ggspectra-0.3.6/ggspectra/R/autoplot-response-spct.r | 22 ggspectra-0.3.6/ggspectra/R/autoplot-source-spct.r | 51 ggspectra-0.3.6/ggspectra/R/autoplot-waveband.R | 35 ggspectra-0.3.6/ggspectra/R/color-chart.R | 2 ggspectra-0.3.6/ggspectra/R/decoration.R | 281 +- ggspectra-0.3.6/ggspectra/R/geom-spct.r |only ggspectra-0.3.6/ggspectra/R/ggplot-methods.R | 155 - ggspectra-0.3.6/ggspectra/R/ggspectra.r |only ggspectra-0.3.6/ggspectra/R/multiplot.r |only ggspectra-0.3.6/ggspectra/R/stat-color.R | 40 ggspectra-0.3.6/ggspectra/R/stat-find-wls.R | 153 - ggspectra-0.3.6/ggspectra/R/stat-label-peaks.R | 64 ggspectra-0.3.6/ggspectra/R/stat-peaks.R | 186 - ggspectra-0.3.6/ggspectra/R/stat-spikes.R |only ggspectra-0.3.6/ggspectra/R/stat-wb-box.R | 12 ggspectra-0.3.6/ggspectra/R/stat-wb-column.R | 16 ggspectra-0.3.6/ggspectra/R/stat-wb-contribution.R | 9 ggspectra-0.3.6/ggspectra/R/stat-wb-hbar.R | 7 ggspectra-0.3.6/ggspectra/R/stat-wb-irrad.R | 80 ggspectra-0.3.6/ggspectra/R/stat-wb-label.R | 33 ggspectra-0.3.6/ggspectra/R/stat-wb-mean.R | 9 ggspectra-0.3.6/ggspectra/R/stat-wb-relative.R | 9 ggspectra-0.3.6/ggspectra/R/stat-wb-sirrad.R | 13 ggspectra-0.3.6/ggspectra/R/stat-wb-total.R | 9 ggspectra-0.3.6/ggspectra/R/stat-wl-strip.R | 64 ggspectra-0.3.6/ggspectra/R/stat-wl-summary.R | 19 ggspectra-0.3.6/ggspectra/README.md | 4 ggspectra-0.3.6/ggspectra/build/vignette.rds |binary ggspectra-0.3.6/ggspectra/inst/doc/userguide1-grammar.R | 28 ggspectra-0.3.6/ggspectra/inst/doc/userguide1-grammar.Rmd | 48 ggspectra-0.3.6/ggspectra/inst/doc/userguide1-grammar.html | 1313 +++++----- ggspectra-0.3.6/ggspectra/inst/doc/userguide2-autoplot-methods.R | 24 ggspectra-0.3.6/ggspectra/inst/doc/userguide2-autoplot-methods.Rmd | 27 ggspectra-0.3.6/ggspectra/inst/doc/userguide2-autoplot-methods.html | 315 +- ggspectra-0.3.6/ggspectra/inst/doc/userguide3-data-manip.R | 14 ggspectra-0.3.6/ggspectra/inst/doc/userguide3-data-manip.Rmd | 29 ggspectra-0.3.6/ggspectra/inst/doc/userguide3-data-manip.html | 196 - ggspectra-0.3.6/ggspectra/man/A_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/Afr_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/O_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/R_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/T_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/autoplot.calibration_spct.Rd | 7 ggspectra-0.3.6/ggspectra/man/autoplot.cps_spct.Rd | 7 ggspectra-0.3.6/ggspectra/man/autoplot.filter_spct.Rd | 19 ggspectra-0.3.6/ggspectra/man/autoplot.object_spct.Rd | 11 ggspectra-0.3.6/ggspectra/man/autoplot.raw_spct.Rd | 7 ggspectra-0.3.6/ggspectra/man/autoplot.reflector_spct.Rd | 19 ggspectra-0.3.6/ggspectra/man/autoplot.response_spct.Rd | 7 ggspectra-0.3.6/ggspectra/man/autoplot.source_spct.Rd | 19 ggspectra-0.3.6/ggspectra/man/autoplot.waveband.Rd | 7 ggspectra-0.3.6/ggspectra/man/cal_plot.Rd | 7 ggspectra-0.3.6/ggspectra/man/cps_plot.Rd | 7 ggspectra-0.3.6/ggspectra/man/decoration.Rd | 10 ggspectra-0.3.6/ggspectra/man/e_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/e_rsp_plot.Rd | 7 ggspectra-0.3.6/ggspectra/man/figures/README-example0-1.png |binary ggspectra-0.3.6/ggspectra/man/figures/README-example1-1.png |binary ggspectra-0.3.6/ggspectra/man/figures/README-example2-1.png |binary ggspectra-0.3.6/ggspectra/man/geom_spct.Rd | 2 ggspectra-0.3.6/ggspectra/man/gg2spectra-ggproto.Rd | 171 - ggspectra-0.3.6/ggspectra/man/ggplot.Rd | 55 ggspectra-0.3.6/ggspectra/man/ggspectra-package.Rd | 8 ggspectra-0.3.6/ggspectra/man/multiplot.Rd | 2 ggspectra-0.3.6/ggspectra/man/q_plot.Rd | 11 ggspectra-0.3.6/ggspectra/man/q_rsp_plot.Rd | 7 ggspectra-0.3.6/ggspectra/man/raw_plot.Rd | 7 ggspectra-0.3.6/ggspectra/man/stat_color.Rd | 221 - ggspectra-0.3.6/ggspectra/man/stat_find_qtys.Rd | 21 ggspectra-0.3.6/ggspectra/man/stat_find_wls.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_label_peaks.Rd | 6 ggspectra-0.3.6/ggspectra/man/stat_peaks.Rd | 421 +-- ggspectra-0.3.6/ggspectra/man/stat_spikes.Rd |only ggspectra-0.3.6/ggspectra/man/stat_wb_box.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_column.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_contribution.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_hbar.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_irrad.Rd | 7 ggspectra-0.3.6/ggspectra/man/stat_wb_label.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_mean.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_relative.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wb_sirrad.Rd | 7 ggspectra-0.3.6/ggspectra/man/stat_wb_total.Rd | 5 ggspectra-0.3.6/ggspectra/man/stat_wl_strip.Rd | 11 ggspectra-0.3.6/ggspectra/man/stat_wl_summary.Rd | 1 ggspectra-0.3.6/ggspectra/man/w_number.Rd | 48 ggspectra-0.3.6/ggspectra/vignettes/userguide1-grammar.Rmd | 48 ggspectra-0.3.6/ggspectra/vignettes/userguide2-autoplot-methods.Rmd | 27 ggspectra-0.3.6/ggspectra/vignettes/userguide3-data-manip.Rmd | 29 100 files changed, 3169 insertions(+), 1994 deletions(-)
Title: Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Description: Provides nonparametric CUSUM tests for detecting changes
in possibly serially dependent univariate or multivariate
observations. Offline tests sensitive to changes in the expectation,
the variance, the covariance, the autocovariance, the distribution
function, Spearman's rho, Kendall's tau, Gini's mean difference, and
the copula are provided, as well as a test for detecting changes in
the distribution of independent block maxima (with environmental
studies in mind). The package also contains a test sensitive to
changes in the autocopula and a combined test of stationarity
sensitive to changes in the distribution function and the
autocopula. The latest addition is a sequential test based on
empirical distribution functions that can be used for monitoring
changes in the contemporary distribution of possibly serially
dependent univariate or multivariate observations.
Author: Ivan Kojadinovic
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Diff between npcp versions 0.1-10 dated 2019-03-27 and 0.2-0 dated 2020-04-28
npcp-0.1-10/npcp/R/ci.R |only npcp-0.1-10/npcp/R/cptests.R |only npcp-0.1-10/npcp/R/lnopt.R |only npcp-0.1-10/npcp/R/serialtests.R |only npcp-0.1-10/npcp/src/ci.c |only npcp-0.2-0/npcp/DESCRIPTION | 19 +++++++++-------- npcp-0.2-0/npcp/MD5 | 29 +++++++++++++------------- npcp-0.2-0/npcp/NAMESPACE | 17 ++++++++++----- npcp-0.2-0/npcp/R/cpTests.R |only npcp-0.2-0/npcp/R/lnOpt.R |only npcp-0.2-0/npcp/R/seqCpTests.R |only npcp-0.2-0/npcp/R/serialTests.R |only npcp-0.2-0/npcp/man/cpAutocop.Rd | 7 +++--- npcp-0.2-0/npcp/man/cpDist.Rd | 18 ++++++++++------ npcp-0.2-0/npcp/man/seqCpDist.Rd |only npcp-0.2-0/npcp/man/stDistAutocop.Rd | 9 ++++---- npcp-0.2-0/npcp/src/cdftest.c | 10 ++++---- npcp-0.2-0/npcp/src/init.c | 39 ++++++++++++++++++++++++++++++++++- npcp-0.2-0/npcp/src/npcp.h | 23 ++++++++++++++++++++ npcp-0.2-0/npcp/src/seqcdftest.c |only npcp-0.2-0/npcp/src/utilities.c | 2 - 21 files changed, 126 insertions(+), 47 deletions(-)
Title: Miscellaneous Utilities and Functions
Description: Miscellaneous tools and functions,
including: generate descriptive statistics tables,
format output, visualize relations among variables or check
distributions, and generic functions for residual and
model diagnostics.
Author: Joshua F. Wiley [aut, cre] (<https://orcid.org/0000-0002-0271-6702>)
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between JWileymisc versions 1.1.0 dated 2020-01-22 and 1.1.1 dated 2020-04-28
DESCRIPTION | 13 +- MD5 | 47 ++++----- NAMESPACE | 9 + NEWS.md | 12 ++ R/diagnostics.R | 2 R/models.R | 177 ++++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/diagnostics-vignette.html | 58 +++++++---- inst/doc/exploratory-vignette.html | 46 +++++---- inst/doc/model-test-vignette.R | 7 + inst/doc/model-test-vignette.Rmd | 11 ++ inst/doc/model-test-vignette.html | 61 +++++++++--- man/APAStyler.Rd | 30 +++--- man/APAStyler.modelTest.lm.Rd | 3 man/aces_daily.Rd | 6 - man/dot-fround.Rd | 36 +++---- man/f.r2.Rd | 48 ++++----- man/lagk.Rd | 50 +++++----- man/lm2.Rd |only man/modelTest.Rd | 11 ++ man/residualDiagnostics.Rd | 2 man/scoring.Rd | 4 tests/testthat/test-distributions.R | 21 ++-- tests/testthat/test-modelTest.R | 7 - vignettes/model-test-vignette.Rmd | 11 ++ 25 files changed, 467 insertions(+), 205 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Provides 'ggplot2' and 'leaflet' wrapper functions designed to simplify the creation of high quality graph and map visualisations. These functions only require inputs of data, variables and titles to provide beautiful interactive or image visualisations. However they allow for more flexibility if required. The intent is that high quality well-designed graphs and maps can be made more consistently with less effort, code and expertise than would otherwise be required.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 1.1.0 dated 2020-04-22 and 1.1.1 dated 2020-04-28
DESCRIPTION | 6 +- MD5 | 83 ++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS.md | 5 ++ R/er_helpers.R | 48 ++++++++++++++++++++++- R/ggplot_line_fun.R | 2 R/ggplot_scatter_fun.R | 8 +-- R/ggplot_sf_fun.R | 22 ++++------ R/ggplot_stars_fun.R | 16 +++---- R/ggplot_vbar_fun.R | 2 R/leaflet_sf_fun.R | 5 -- R/leaflet_stars_fun.R | 7 +-- inst/doc/simplevis.html | 19 +++++---- man/ggplot_line.Rd | 2 man/ggplot_scatter_col.Rd | 2 man/ggplot_scatter_col_facet.Rd | 2 man/ggplot_sf_col.Rd | 12 ++--- man/ggplot_sf_col_facet.Rd | 4 - man/ggplot_sf_facet.Rd | 2 man/ggplot_stars_col.Rd | 8 +-- man/ggplot_stars_col_facet.Rd | 26 ++++++------ man/ggplot_vbar.Rd | 2 man/leaflet_sf_col.Rd | 5 -- man/leaflet_stars_col.Rd | 13 +++--- man/pal_ea19.Rd | 3 + man/pal_ea19_nof4.Rd | 3 + man/pal_ea19_nof5.Rd | 3 + man/pal_ea19_nztcs_c.Rd | 3 + man/pal_ea19_trend2.Rd | 3 + man/pal_ea19_trend3.Rd | 3 + man/pal_ea19_trend5.Rd | 3 + man/pal_point_set1.Rd | 3 + man/pal_point_trend2.Rd |only man/pal_point_trend3.Rd | 5 +- man/pal_point_trend5.Rd | 5 +- man/pal_snz.Rd | 3 + man/pal_snz_nof4.Rd | 3 + man/pal_snz_nof5.Rd | 3 + man/pal_snz_nztcs_c.Rd | 3 + man/pal_snz_nztcs_s.Rd | 3 + man/pal_snz_trend2.Rd | 3 + man/pal_snz_trend3.Rd | 3 + man/pal_snz_trend5.Rd | 3 + 43 files changed, 230 insertions(+), 130 deletions(-)
Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>,
including storage, database, and compute services, such as 'Simple
Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda'
functions-as-a-service.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws versions 0.1.7 dated 2020-03-31 and 0.1.8 dated 2020-04-28
DESCRIPTION | 18 MD5 | 272 ++++----- NAMESPACE | 268 ++++----- NEWS.md | 5 R/paws.R | 792 ++++++++++++++++++---------- man/acm.Rd | 126 ++-- man/acmpca.Rd | 158 ++--- man/apigateway.Rd | 340 ++++++------ man/apigatewaymanagementapi.Rd | 110 ++- man/apigatewayv2.Rd | 218 +++---- man/applicationautoscaling.Rd | 200 +++---- man/applicationinsights.Rd | 178 +++--- man/appmesh.Rd | 176 +++--- man/athena.Rd | 162 ++--- man/autoscaling.Rd | 228 ++++---- man/autoscalingplans.Rd | 130 ++-- man/backup.Rd | 184 +++--- man/batch.Rd | 162 ++--- man/budgets.Rd | 200 +++---- man/clouddirectory.Rd | 238 ++++---- man/cloudformation.Rd | 240 ++++---- man/cloudfront.Rd | 188 +++--- man/cloudhsm.Rd | 146 ++--- man/cloudhsmv2.Rd | 118 ++-- man/cloudsearch.Rd | 166 +++-- man/cloudsearchdomain.Rd | 118 ++-- man/cloudtrail.Rd | 170 +++--- man/cloudwatch.Rd | 180 +++--- man/cloudwatchevents.Rd | 190 +++--- man/cloudwatchlogs.Rd | 232 ++++---- man/cognitoidentity.Rd | 170 +++--- man/cognitoidentityprovider.Rd | 306 +++++----- man/cognitosync.Rd | 162 ++--- man/comprehend.Rd | 200 +++---- man/comprehendmedical.Rd | 122 ++-- man/configservice.Rd | 286 +++++----- man/connect.Rd | 172 +++--- man/costandusagereportservice.Rd | 132 ++-- man/costexplorer.Rd | 158 ++--- man/datapipeline.Rd | 174 +++--- man/dax.Rd | 146 ++--- man/directconnect.Rd | 216 +++---- man/directoryservice.Rd | 230 ++++---- man/dlm.Rd | 120 ++-- man/docdb.Rd | 176 +++--- man/dynamodb.Rd | 274 ++++----- man/dynamodbstreams.Rd | 112 ++-- man/ec2.Rd | 920 ++++++++++++++++----------------- man/ec2instanceconnect.Rd | 110 ++- man/ecr.Rd | 180 +++--- man/ecs.Rd | 230 ++++---- man/efs.Rd | 146 ++--- man/eks.Rd | 184 +++--- man/elasticache.Rd | 210 +++---- man/elasticbeanstalk.Rd | 214 +++---- man/elasticsearchservice.Rd | 158 ++--- man/elb.Rd | 226 ++++---- man/elbv2.Rd | 236 ++++---- man/emr.Rd | 160 ++--- man/eventbridge.Rd | 190 +++--- man/firehose.Rd | 126 ++-- man/fms.Rd | 136 ++-- man/fsx.Rd | 136 ++-- man/glacier.Rd | 228 ++++---- man/globalaccelerator.Rd | 306 +++++----- man/glue.Rd | 338 ++++++------ man/guardduty.Rd | 222 ++++--- man/health.Rd | 242 ++++---- man/iam.Rd | 482 ++++++++--------- man/inspector.Rd | 190 +++--- man/kafka.Rd | 132 ++-- man/kinesis.Rd | 152 ++--- man/kinesisanalytics.Rd | 148 ++--- man/kinesisanalyticsv2.Rd | 152 ++--- man/kms.Rd | 326 +++++------ man/lambda.Rd | 214 +++---- man/lexmodelbuildingservice.Rd | 176 +++--- man/lexruntimeservice.Rd | 124 ++-- man/licensemanager.Rd | 126 ++-- man/lightsail.Rd | 328 +++++------ man/machinelearning.Rd | 148 ++--- man/macie.Rd | 116 ++-- man/marketplacecommerceanalytics.Rd | 96 +-- man/marketplaceentitlementservice.Rd | 118 ++-- man/marketplacemetering.Rd | 186 +++--- man/mq.Rd | 136 ++-- man/mturk.Rd | 170 +++--- man/neptune.Rd | 246 ++++---- man/opsworks.Rd | 354 ++++++------ man/opsworkscm.Rd | 238 ++++---- man/organizations.Rd | 194 +++--- man/personalize.Rd | 172 +++--- man/personalizeevents.Rd | 94 +-- man/personalizeruntime.Rd | 96 +-- man/pi.Rd | 130 ++-- man/pinpoint.Rd | 306 +++++----- man/pinpointemail.Rd | 242 ++++---- man/pinpointsmsvoice.Rd | 108 +-- man/polly.Rd | 124 ++-- man/pricing.Rd | 152 ++--- man/quicksight.Rd | 234 ++++---- man/ram.Rd | 152 ++--- man/rds.Rd | 428 +++++++-------- man/rdsdataservice.Rd | 124 ++-- man/redshift.Rd | 310 +++++------ man/rekognition.Rd | 202 +++---- man/resourcegroups.Rd | 176 +++--- man/resourcegroupstaggingapi.Rd | 376 ++++++------- man/route53.Rd | 220 +++---- man/route53domains.Rd | 142 ++--- man/route53resolver.Rd | 196 +++---- man/s3.Rd | 274 ++++----- man/s3control.Rd | 124 ++-- man/sagemaker.Rd | 354 ++++++------ man/sagemakerruntime.Rd | 94 +-- man/secretsmanager.Rd | 258 ++++----- man/securityhub.Rd | 230 ++++---- man/serverlessapplicationrepository.Rd | 184 +++--- man/servicecatalog.Rd | 264 ++++----- man/servicediscovery.Rd | 146 ++--- man/servicequotas.Rd | 148 ++--- man/ses.Rd | 250 ++++---- man/sfn.Rd | 172 +++--- man/shield.Rd | 140 ++--- man/simpledb.Rd | 112 ++-- man/sns.Rd | 184 +++--- man/sqs.Rd | 192 +++--- man/ssm.Rd | 374 ++++++------- man/storagegateway.Rd | 360 ++++++------ man/sts.Rd | 316 +++++------ man/support.Rd | 218 +++---- man/swf.Rd | 192 +++--- man/textract.Rd | 108 +-- man/transcribeservice.Rd | 120 ++-- man/translate.Rd | 112 ++-- man/waf.Rd | 262 ++++----- man/wafregional.Rd | 272 ++++----- 137 files changed, 14248 insertions(+), 13715 deletions(-)
Title: Toolkit for Credit Modeling, Analysis and Visualization
Description: Provides a highly efficient R tool suite for Credit Modeling, Analysis and Visualization. Contains infrastructure functionalities such as data exploration and preparation, missing values treatment, outliers treatment, variable derivation, variable selection, dimensionality reduction, grid search for hyper parameters, data mining and visualization, model evaluation, strategy analysis etc. This package is designed to make the development of binary classification models (machine learning based models as well as credit scorecard) simpler and faster.
Author: Dongping Fan [aut, cre]
Maintainer: Dongping Fan <fdp@pku.edu.cn>
Diff between creditmodel versions 1.1.9 dated 2020-04-20 and 1.2 dated 2020-04-28
DESCRIPTION | 8 MD5 | 49 +-- NAMESPACE | 2 NEWS.md | 10 R/creditmodel.r | 4 R/data_anaylsis.R | 180 +++++++++----- R/data_cleansing.R | 30 +- R/data_exploration.R | 2 R/data_process_tools.R | 43 +-- R/data_transformation.R | 187 +++++++++----- R/data_visualization.R | 551 +++++++++++++++++++++---------------------- R/essential_algorithms.R | 14 - inst/doc/introduction.html | 84 +++--- man/creditmodel-package.Rd | 3 man/cross_table.Rd | 4 man/customer_segmentation.Rd | 2 man/data_cleansing.Rd | 2 man/fuzzy_cluster_means.Rd | 4 man/get_breaks_all.Rd | 4 man/get_ctree_rules.Rd | 2 man/get_tree_breaks.Rd | 2 man/lr_params.Rd | 8 man/psi_iv_filter.Rd | 4 man/replace_value.Rd |only man/rules_filter.Rd | 8 man/train_lr.Rd | 8 26 files changed, 672 insertions(+), 543 deletions(-)
Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of
statistical regression models. The central algorithm is
Fisher scoring and iterative reweighted least squares.
At the heart of this package are the vector generalized linear
and additive model (VGLM/VGAM) classes. VGLMs can be loosely
thought of as multivariate GLMs. VGAMs are data-driven
VGLMs that use smoothing. The book "Vector Generalized
Linear and Additive Models: With an Implementation in R"
(Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of
the statistical framework and the package. Currently only
fixed-effects models are implemented. Many (150+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE. The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CAO). Note that these functions are subject to change;
see the NEWS and ChangeLog files for latest changes.
Author: Thomas Yee [aut, cre],
Cleve Moler [ctb] (author of several LINPACK routines)
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAM versions 1.1-2 dated 2019-11-21 and 1.1-3 dated 2020-04-28
VGAM-1.1-2/VGAM/R/family.ait.R |only VGAM-1.1-2/VGAM/data/Huggins89.t1.rda |only VGAM-1.1-2/VGAM/data/Huggins89table1.rda |only VGAM-1.1-2/VGAM/data/V1.txt.gz |only VGAM-1.1-2/VGAM/data/alclevels.rda |only VGAM-1.1-2/VGAM/data/alcoff.rda |only VGAM-1.1-2/VGAM/data/auuc.rda |only VGAM-1.1-2/VGAM/data/backPain.rda |only VGAM-1.1-2/VGAM/data/backPain.txt.gz |only VGAM-1.1-2/VGAM/data/backPain2.rda |only VGAM-1.1-2/VGAM/data/beggs.rda |only VGAM-1.1-2/VGAM/data/bmi.nz.txt.xz |only VGAM-1.1-2/VGAM/data/car.all.rda |only VGAM-1.1-2/VGAM/data/cfibrosis.rda |only VGAM-1.1-2/VGAM/data/chest.nz.txt.bz2 |only VGAM-1.1-2/VGAM/data/chinese.nz.txt.gz |only VGAM-1.1-2/VGAM/data/coalminers.txt.gz |only VGAM-1.1-2/VGAM/data/corbet.rda |only VGAM-1.1-2/VGAM/data/crashbc.rda |only VGAM-1.1-2/VGAM/data/crashf.rda |only VGAM-1.1-2/VGAM/data/crashi.rda |only VGAM-1.1-2/VGAM/data/crashmc.rda |only VGAM-1.1-2/VGAM/data/crashp.rda |only VGAM-1.1-2/VGAM/data/crashtr.rda |only VGAM-1.1-2/VGAM/data/deermice.rda |only VGAM-1.1-2/VGAM/data/ducklings.rda |only VGAM-1.1-2/VGAM/data/enzyme.txt.gz |only VGAM-1.1-2/VGAM/data/finney44.rda |only VGAM-1.1-2/VGAM/data/flourbeetle.rda |only VGAM-1.1-2/VGAM/data/gew.txt.gz |only VGAM-1.1-2/VGAM/data/grain.us.txt.bz2 |only VGAM-1.1-2/VGAM/data/hormone.txt.bz2 |only VGAM-1.1-2/VGAM/data/hspider.rda |only VGAM-1.1-2/VGAM/data/hunua.txt.bz2 |only VGAM-1.1-2/VGAM/data/lakeO.rda |only VGAM-1.1-2/VGAM/data/leukemia.rda |only VGAM-1.1-2/VGAM/data/lirat.txt.gz |only VGAM-1.1-2/VGAM/data/machinists.txt.gz |only VGAM-1.1-2/VGAM/data/marital.nz.rda |only VGAM-1.1-2/VGAM/data/melbmaxtemp.rda |only VGAM-1.1-2/VGAM/data/olym08.txt.gz |only VGAM-1.1-2/VGAM/data/olym12.txt.gz |only VGAM-1.1-2/VGAM/data/oxtemp.txt.gz |only VGAM-1.1-2/VGAM/data/pneumo.rda |only VGAM-1.1-2/VGAM/data/prats.txt.gz |only VGAM-1.1-2/VGAM/data/prinia.rda |only VGAM-1.1-2/VGAM/data/ruge.rda |only VGAM-1.1-2/VGAM/data/toxop.rda |only VGAM-1.1-2/VGAM/data/ucberk.txt.gz |only VGAM-1.1-2/VGAM/data/venice.rda |only VGAM-1.1-2/VGAM/data/venice90.rda |only VGAM-1.1-2/VGAM/data/waitakere.txt.bz2 |only VGAM-1.1-2/VGAM/data/wine.rda |only VGAM-1.1-2/VGAM/man/gaitpois.mixUC.Rd |only VGAM-1.1-2/VGAM/man/gaitpois.mlmUC.Rd |only VGAM-1.1-2/VGAM/man/gatpoisson.mix.Rd |only VGAM-1.1-2/VGAM/man/gatpoisson.mlm.Rd |only VGAM-1.1-2/VGAM/man/gipoisson.mlm.Rd |only VGAM-1.1-2/VGAM/src/cqof.f |only VGAM-1.1-2/VGAM/src/vcall2.f |only VGAM-1.1-3/VGAM/DESCRIPTION | 8 VGAM-1.1-3/VGAM/MD5 | 1034 +++++++++---------- VGAM-1.1-3/VGAM/NAMESPACE | 38 VGAM-1.1-3/VGAM/NEWS | 48 VGAM-1.1-3/VGAM/R/Links.R | 50 VGAM-1.1-3/VGAM/R/aamethods.q | 33 VGAM-1.1-3/VGAM/R/anova.vglm.q | 2 VGAM-1.1-3/VGAM/R/attrassign.R | 2 VGAM-1.1-3/VGAM/R/bAIC.q | 2 VGAM-1.1-3/VGAM/R/build.terms.vlm.q | 2 VGAM-1.1-3/VGAM/R/calibrate.R | 2 VGAM-1.1-3/VGAM/R/cao.R | 2 VGAM-1.1-3/VGAM/R/cao.fit.q | 2 VGAM-1.1-3/VGAM/R/coef.vlm.q | 93 - VGAM-1.1-3/VGAM/R/confint.vlm.R | 2 VGAM-1.1-3/VGAM/R/cqo.R | 2 VGAM-1.1-3/VGAM/R/cqo.fit.q | 2 VGAM-1.1-3/VGAM/R/deviance.vlm.q | 2 VGAM-1.1-3/VGAM/R/effects.vglm.q | 2 VGAM-1.1-3/VGAM/R/family.actuary.R | 2 VGAM-1.1-3/VGAM/R/family.aunivariate.R | 63 - VGAM-1.1-3/VGAM/R/family.basics.R | 15 VGAM-1.1-3/VGAM/R/family.binomial.R | 2 VGAM-1.1-3/VGAM/R/family.bivariate.R | 2 VGAM-1.1-3/VGAM/R/family.categorical.R | 2 VGAM-1.1-3/VGAM/R/family.censored.R | 2 VGAM-1.1-3/VGAM/R/family.circular.R | 2 VGAM-1.1-3/VGAM/R/family.exp.R | 2 VGAM-1.1-3/VGAM/R/family.extremes.R | 2 VGAM-1.1-3/VGAM/R/family.functions.R | 2 VGAM-1.1-3/VGAM/R/family.gait.R |only VGAM-1.1-3/VGAM/R/family.genetic.R | 2 VGAM-1.1-3/VGAM/R/family.glmgam.R | 2 VGAM-1.1-3/VGAM/R/family.loglin.R | 2 VGAM-1.1-3/VGAM/R/family.maths.R | 2 VGAM-1.1-3/VGAM/R/family.mixture.R | 2 VGAM-1.1-3/VGAM/R/family.nbd.R | 4 VGAM-1.1-3/VGAM/R/family.nonlinear.R | 2 VGAM-1.1-3/VGAM/R/family.normal.R | 2 VGAM-1.1-3/VGAM/R/family.oneinf.R | 1242 ++++++++++++++++++++++- VGAM-1.1-3/VGAM/R/family.others.R | 681 ++++++++++++ VGAM-1.1-3/VGAM/R/family.positive.R | 46 VGAM-1.1-3/VGAM/R/family.qreg.R | 2 VGAM-1.1-3/VGAM/R/family.rcim.R | 2 VGAM-1.1-3/VGAM/R/family.rcqo.R | 2 VGAM-1.1-3/VGAM/R/family.robust.R | 2 VGAM-1.1-3/VGAM/R/family.rrr.R | 2 VGAM-1.1-3/VGAM/R/family.sur.R | 2 VGAM-1.1-3/VGAM/R/family.survival.R | 2 VGAM-1.1-3/VGAM/R/family.ts.R | 2 VGAM-1.1-3/VGAM/R/family.univariate.R | 2 VGAM-1.1-3/VGAM/R/family.vglm.R | 2 VGAM-1.1-3/VGAM/R/family.zeroinf.R | 3 VGAM-1.1-3/VGAM/R/fittedvlm.R | 2 VGAM-1.1-3/VGAM/R/formula.vlm.q | 2 VGAM-1.1-3/VGAM/R/generic.q | 2 VGAM-1.1-3/VGAM/R/getxvlmaug.R | 2 VGAM-1.1-3/VGAM/R/hdeff.R | 76 + VGAM-1.1-3/VGAM/R/links.q | 2 VGAM-1.1-3/VGAM/R/linksold.R | 11 VGAM-1.1-3/VGAM/R/logLik.vlm.q | 2 VGAM-1.1-3/VGAM/R/lrp.R | 2 VGAM-1.1-3/VGAM/R/lrwaldtest.R | 2 VGAM-1.1-3/VGAM/R/model.matrix.vglm.q | 2 VGAM-1.1-3/VGAM/R/mux.q | 2 VGAM-1.1-3/VGAM/R/nobs.R | 2 VGAM-1.1-3/VGAM/R/plot.vgam.R | 2 VGAM-1.1-3/VGAM/R/plot.vglm.R | 2 VGAM-1.1-3/VGAM/R/predict.vgam.q | 2 VGAM-1.1-3/VGAM/R/predict.vglm.q | 2 VGAM-1.1-3/VGAM/R/predict.vlm.q | 2 VGAM-1.1-3/VGAM/R/print.vglm.q | 2 VGAM-1.1-3/VGAM/R/print.vlm.q | 2 VGAM-1.1-3/VGAM/R/psv2magic.R | 2 VGAM-1.1-3/VGAM/R/qrrvglm.control.q | 2 VGAM-1.1-3/VGAM/R/qtplot.q | 5 VGAM-1.1-3/VGAM/R/residuals.vlm.q | 2 VGAM-1.1-3/VGAM/R/rootogram4.vglm.R | 309 ++++- VGAM-1.1-3/VGAM/R/rootogramsubset.R | 19 VGAM-1.1-3/VGAM/R/rrvglm.R | 2 VGAM-1.1-3/VGAM/R/rrvglm.control.q | 2 VGAM-1.1-3/VGAM/R/rrvglm.fit.q | 2 VGAM-1.1-3/VGAM/R/s.q | 2 VGAM-1.1-3/VGAM/R/s.vam.q | 2 VGAM-1.1-3/VGAM/R/simulate.vglm.R | 2 VGAM-1.1-3/VGAM/R/sm.os.R | 2 VGAM-1.1-3/VGAM/R/sm.ps.R | 2 VGAM-1.1-3/VGAM/R/smart.R | 2 VGAM-1.1-3/VGAM/R/step4.vglm.R | 2 VGAM-1.1-3/VGAM/R/summary.vgam.q | 2 VGAM-1.1-3/VGAM/R/summary.vglm.q | 2 VGAM-1.1-3/VGAM/R/summary.vlm.q | 2 VGAM-1.1-3/VGAM/R/vcov.pvgam.R | 2 VGAM-1.1-3/VGAM/R/vgam.R | 2 VGAM-1.1-3/VGAM/R/vgam.control.q | 2 VGAM-1.1-3/VGAM/R/vgam.fit.q | 2 VGAM-1.1-3/VGAM/R/vgam.match.q | 2 VGAM-1.1-3/VGAM/R/vglm.R | 2 VGAM-1.1-3/VGAM/R/vglm.control.q | 2 VGAM-1.1-3/VGAM/R/vglm.fit.q | 2 VGAM-1.1-3/VGAM/R/vlm.R | 2 VGAM-1.1-3/VGAM/R/vlm.wfit.q | 2 VGAM-1.1-3/VGAM/R/vsmooth.spline.q | 2 VGAM-1.1-3/VGAM/R/wald0.R | 2 VGAM-1.1-3/VGAM/build/partial.rdb |binary VGAM-1.1-3/VGAM/build/vignette.rds |binary VGAM-1.1-3/VGAM/data/Huggins89.t1.R |only VGAM-1.1-3/VGAM/data/Huggins89table1.R |only VGAM-1.1-3/VGAM/data/V1.txt |only VGAM-1.1-3/VGAM/data/V2.txt |only VGAM-1.1-3/VGAM/data/alclevels.R |only VGAM-1.1-3/VGAM/data/alcoff.R |only VGAM-1.1-3/VGAM/data/auuc.R |only VGAM-1.1-3/VGAM/data/backPain.R |only VGAM-1.1-3/VGAM/data/backPain.txt |only VGAM-1.1-3/VGAM/data/backPain2.R |only VGAM-1.1-3/VGAM/data/beggs.R |only VGAM-1.1-3/VGAM/data/bmi.nz.txt |only VGAM-1.1-3/VGAM/data/car.all.R |only VGAM-1.1-3/VGAM/data/cfibrosis.R |only VGAM-1.1-3/VGAM/data/chest.nz.txt |only VGAM-1.1-3/VGAM/data/chinese.nz.txt |only VGAM-1.1-3/VGAM/data/coalminers.txt |only VGAM-1.1-3/VGAM/data/corbet.R |only VGAM-1.1-3/VGAM/data/crashbc.R |only VGAM-1.1-3/VGAM/data/crashf.R |only VGAM-1.1-3/VGAM/data/crashi.R |only VGAM-1.1-3/VGAM/data/crashmc.R |only VGAM-1.1-3/VGAM/data/crashp.R |only VGAM-1.1-3/VGAM/data/crashtr.R |only VGAM-1.1-3/VGAM/data/deermice.R |only VGAM-1.1-3/VGAM/data/ducklings.R |only VGAM-1.1-3/VGAM/data/enzyme.txt |only VGAM-1.1-3/VGAM/data/finney44.R |only VGAM-1.1-3/VGAM/data/flourbeetle.R |only VGAM-1.1-3/VGAM/data/gew.txt |only VGAM-1.1-3/VGAM/data/grain.us.txt |only VGAM-1.1-3/VGAM/data/hormone.txt |only VGAM-1.1-3/VGAM/data/hspider.R |only VGAM-1.1-3/VGAM/data/hunua.txt |only VGAM-1.1-3/VGAM/data/lakeO.R |only VGAM-1.1-3/VGAM/data/leukemia.R |only VGAM-1.1-3/VGAM/data/lirat.txt |only VGAM-1.1-3/VGAM/data/machinists.txt |only VGAM-1.1-3/VGAM/data/marital.nz.R |only VGAM-1.1-3/VGAM/data/melbmaxtemp.R |only VGAM-1.1-3/VGAM/data/olym08.txt |only VGAM-1.1-3/VGAM/data/olym12.txt |only VGAM-1.1-3/VGAM/data/oxtemp.txt |only VGAM-1.1-3/VGAM/data/pneumo.R |only VGAM-1.1-3/VGAM/data/prats.txt |only VGAM-1.1-3/VGAM/data/prinia.R |only VGAM-1.1-3/VGAM/data/ruge.R |only VGAM-1.1-3/VGAM/data/toxop.R |only VGAM-1.1-3/VGAM/data/ucberk.txt |only VGAM-1.1-3/VGAM/data/venice.R |only VGAM-1.1-3/VGAM/data/venice90.R |only VGAM-1.1-3/VGAM/data/waitakere.txt |only VGAM-1.1-3/VGAM/data/wine.R |only VGAM-1.1-3/VGAM/inst/CITATION | 285 ++--- VGAM-1.1-3/VGAM/inst/doc/categoricalVGAM.pdf |binary VGAM-1.1-3/VGAM/inst/doc/crVGAM.pdf |binary VGAM-1.1-3/VGAM/man/A1A2A3.Rd | 2 VGAM-1.1-3/VGAM/man/AA.Aa.aa.Rd | 2 VGAM-1.1-3/VGAM/man/AB.Ab.aB.ab.Rd | 2 VGAM-1.1-3/VGAM/man/ABO.Rd | 2 VGAM-1.1-3/VGAM/man/AICvlm.Rd | 2 VGAM-1.1-3/VGAM/man/AR1.Rd | 2 VGAM-1.1-3/VGAM/man/AR1EIM.Rd | 2 VGAM-1.1-3/VGAM/man/Coef.Rd | 2 VGAM-1.1-3/VGAM/man/Coef.qrrvglm-class.Rd | 2 VGAM-1.1-3/VGAM/man/Coef.qrrvglm.Rd | 4 VGAM-1.1-3/VGAM/man/Coef.rrvglm-class.Rd | 2 VGAM-1.1-3/VGAM/man/Coef.rrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/Coef.vlm.Rd | 2 VGAM-1.1-3/VGAM/man/CommonVGAMffArguments.Rd | 11 VGAM-1.1-3/VGAM/man/Huggins89.t1.Rd | 2 VGAM-1.1-3/VGAM/man/Inv.gaussian.Rd | 4 VGAM-1.1-3/VGAM/man/Links.Rd | 2 VGAM-1.1-3/VGAM/man/MNSs.Rd | 2 VGAM-1.1-3/VGAM/man/Max.Rd | 4 VGAM-1.1-3/VGAM/man/Opt.Rd | 4 VGAM-1.1-3/VGAM/man/ParetoUC.Rd | 2 VGAM-1.1-3/VGAM/man/QvarUC.Rd | 6 VGAM-1.1-3/VGAM/man/R2latvar.Rd | 6 VGAM-1.1-3/VGAM/man/SURff.Rd | 4 VGAM-1.1-3/VGAM/man/TICvlm.Rd | 4 VGAM-1.1-3/VGAM/man/Tol.Rd | 4 VGAM-1.1-3/VGAM/man/UtilitiesVGAM.Rd | 2 VGAM-1.1-3/VGAM/man/V1.Rd | 30 VGAM-1.1-3/VGAM/man/V2.Rd |only VGAM-1.1-3/VGAM/man/VGAM-package.Rd | 2 VGAM-1.1-3/VGAM/man/acat.Rd | 6 VGAM-1.1-3/VGAM/man/alaplace3.Rd | 40 VGAM-1.1-3/VGAM/man/alaplaceUC.Rd | 19 VGAM-1.1-3/VGAM/man/alteredvglm.Rd |only VGAM-1.1-3/VGAM/man/amlbinomial.Rd | 33 VGAM-1.1-3/VGAM/man/amlexponential.Rd | 48 VGAM-1.1-3/VGAM/man/amlnormal.Rd | 3 VGAM-1.1-3/VGAM/man/amlpoisson.Rd | 9 VGAM-1.1-3/VGAM/man/auuc.Rd | 2 VGAM-1.1-3/VGAM/man/backPain.Rd | 7 VGAM-1.1-3/VGAM/man/beggs.Rd | 2 VGAM-1.1-3/VGAM/man/bell.Rd | 6 VGAM-1.1-3/VGAM/man/bellff.Rd | 2 VGAM-1.1-3/VGAM/man/benfUC.Rd | 4 VGAM-1.1-3/VGAM/man/benini.Rd | 2 VGAM-1.1-3/VGAM/man/beniniUC.Rd | 2 VGAM-1.1-3/VGAM/man/betaII.Rd | 2 VGAM-1.1-3/VGAM/man/betaR.Rd | 4 VGAM-1.1-3/VGAM/man/betabinomial.Rd | 4 VGAM-1.1-3/VGAM/man/betabinomialff.Rd | 4 VGAM-1.1-3/VGAM/man/betaff.Rd | 2 VGAM-1.1-3/VGAM/man/betageometric.Rd | 2 VGAM-1.1-3/VGAM/man/betanormUC.Rd | 4 VGAM-1.1-3/VGAM/man/betaprime.Rd | 2 VGAM-1.1-3/VGAM/man/biamhcop.Rd | 4 VGAM-1.1-3/VGAM/man/biclaytoncop.Rd | 4 VGAM-1.1-3/VGAM/man/biclaytoncopUC.Rd | 2 VGAM-1.1-3/VGAM/man/bifgmcop.Rd | 4 VGAM-1.1-3/VGAM/man/bifgmexp.Rd | 2 VGAM-1.1-3/VGAM/man/bifrankcop.Rd | 2 VGAM-1.1-3/VGAM/man/bifrankcopUC.Rd | 2 VGAM-1.1-3/VGAM/man/bigamma.mckay.Rd | 6 VGAM-1.1-3/VGAM/man/bigumbelIexp.Rd | 2 VGAM-1.1-3/VGAM/man/bilogisUC.Rd | 2 VGAM-1.1-3/VGAM/man/bilogistic.Rd | 4 VGAM-1.1-3/VGAM/man/binom2.or.Rd | 8 VGAM-1.1-3/VGAM/man/binom2.rho.Rd | 6 VGAM-1.1-3/VGAM/man/binomialff.Rd | 6 VGAM-1.1-3/VGAM/man/binormalUC.Rd | 2 VGAM-1.1-3/VGAM/man/binormalcop.Rd | 2 VGAM-1.1-3/VGAM/man/biplackettcop.Rd | 2 VGAM-1.1-3/VGAM/man/biplackettcopUC.Rd | 2 VGAM-1.1-3/VGAM/man/bisa.Rd | 10 VGAM-1.1-3/VGAM/man/bistudentt.Rd | 2 VGAM-1.1-3/VGAM/man/bistudenttUC.Rd | 2 VGAM-1.1-3/VGAM/man/borel.tanner.Rd | 10 VGAM-1.1-3/VGAM/man/brat.Rd | 4 VGAM-1.1-3/VGAM/man/bratUC.Rd | 2 VGAM-1.1-3/VGAM/man/bratt.Rd | 2 VGAM-1.1-3/VGAM/man/calibrate.qrrvglm.control.Rd | 2 VGAM-1.1-3/VGAM/man/cao.Rd | 2 VGAM-1.1-3/VGAM/man/cao.control.Rd | 4 VGAM-1.1-3/VGAM/man/cardioid.Rd | 2 VGAM-1.1-3/VGAM/man/cauchitlink.Rd | 2 VGAM-1.1-3/VGAM/man/cauchy.Rd | 8 VGAM-1.1-3/VGAM/man/cdf.lmscreg.Rd | 2 VGAM-1.1-3/VGAM/man/cens.gumbel.Rd | 2 VGAM-1.1-3/VGAM/man/cgo.Rd | 4 VGAM-1.1-3/VGAM/man/chisq.Rd | 2 VGAM-1.1-3/VGAM/man/clo.Rd | 4 VGAM-1.1-3/VGAM/man/clogloglink.Rd | 2 VGAM-1.1-3/VGAM/man/coalminers.Rd | 2 VGAM-1.1-3/VGAM/man/coefvlm.Rd | 2 VGAM-1.1-3/VGAM/man/concoef.Rd | 6 VGAM-1.1-3/VGAM/man/constraints.Rd | 4 VGAM-1.1-3/VGAM/man/corbet.Rd | 2 VGAM-1.1-3/VGAM/man/cqo.Rd | 8 VGAM-1.1-3/VGAM/man/cratio.Rd | 6 VGAM-1.1-3/VGAM/man/cumulative.Rd | 14 VGAM-1.1-3/VGAM/man/dagum.Rd | 2 VGAM-1.1-3/VGAM/man/dagumUC.Rd | 2 VGAM-1.1-3/VGAM/man/deermice.Rd | 4 VGAM-1.1-3/VGAM/man/deplot.lmscreg.Rd | 2 VGAM-1.1-3/VGAM/man/diffzeta.Rd | 6 VGAM-1.1-3/VGAM/man/dirichlet.Rd | 4 VGAM-1.1-3/VGAM/man/dirmul.old.Rd | 8 VGAM-1.1-3/VGAM/man/dirmultinomial.Rd | 4 VGAM-1.1-3/VGAM/man/double.cens.normal.Rd | 2 VGAM-1.1-3/VGAM/man/double.expbinomial.Rd | 2 VGAM-1.1-3/VGAM/man/drop1.Rd | 2 VGAM-1.1-3/VGAM/man/eCDF.Rd |only VGAM-1.1-3/VGAM/man/eexpUC.Rd | 2 VGAM-1.1-3/VGAM/man/enormUC.Rd | 2 VGAM-1.1-3/VGAM/man/enzyme.Rd | 2 VGAM-1.1-3/VGAM/man/erf.Rd | 2 VGAM-1.1-3/VGAM/man/erlang.Rd | 2 VGAM-1.1-3/VGAM/man/eunifUC.Rd | 4 VGAM-1.1-3/VGAM/man/expexpff.Rd | 4 VGAM-1.1-3/VGAM/man/expexpff1.Rd | 2 VGAM-1.1-3/VGAM/man/explink.Rd | 2 VGAM-1.1-3/VGAM/man/exponential.Rd | 2 VGAM-1.1-3/VGAM/man/extlogF.UC.Rd |only VGAM-1.1-3/VGAM/man/extlogF1.Rd |only VGAM-1.1-3/VGAM/man/felix.Rd | 2 VGAM-1.1-3/VGAM/man/fff.Rd | 2 VGAM-1.1-3/VGAM/man/finney44.Rd | 2 VGAM-1.1-3/VGAM/man/fisherzlink.Rd | 2 VGAM-1.1-3/VGAM/man/fisk.Rd | 2 VGAM-1.1-3/VGAM/man/fiskUC.Rd | 2 VGAM-1.1-3/VGAM/man/fittedvlm.Rd | 2 VGAM-1.1-3/VGAM/man/fix.crossing.Rd |only VGAM-1.1-3/VGAM/man/foldnormal.Rd | 4 VGAM-1.1-3/VGAM/man/frechet.Rd | 2 VGAM-1.1-3/VGAM/man/frechetUC.Rd | 2 VGAM-1.1-3/VGAM/man/freund61.Rd | 2 VGAM-1.1-3/VGAM/man/gabinomial.mlm.Rd | 4 VGAM-1.1-3/VGAM/man/gaitbinom.mlmUC.Rd | 6 VGAM-1.1-3/VGAM/man/gaitlog.mix.Rd |only VGAM-1.1-3/VGAM/man/gaitlogUC.Rd |only VGAM-1.1-3/VGAM/man/gaitnbinom.mixUC.Rd | 32 VGAM-1.1-3/VGAM/man/gaitnbinom.mlmUC.Rd | 14 VGAM-1.1-3/VGAM/man/gaitpoisUC.Rd |only VGAM-1.1-3/VGAM/man/gaitpoisson.mix.Rd |only VGAM-1.1-3/VGAM/man/gaitpoisson.mlm.Rd |only VGAM-1.1-3/VGAM/man/gaitzetaUC.Rd |only VGAM-1.1-3/VGAM/man/gamma1.Rd | 2 VGAM-1.1-3/VGAM/man/gamma2.Rd | 2 VGAM-1.1-3/VGAM/man/gammaR.Rd | 2 VGAM-1.1-3/VGAM/man/gammahyperbola.Rd | 2 VGAM-1.1-3/VGAM/man/garma.Rd | 6 VGAM-1.1-3/VGAM/man/gatnbinomial.mix.Rd | 59 - VGAM-1.1-3/VGAM/man/gatnbinomial.mlm.Rd | 30 VGAM-1.1-3/VGAM/man/genbetaII.Rd | 4 VGAM-1.1-3/VGAM/man/genbetaIIUC.Rd | 2 VGAM-1.1-3/VGAM/man/gengamma.Rd | 6 VGAM-1.1-3/VGAM/man/gengammaUC.Rd | 2 VGAM-1.1-3/VGAM/man/genpoisson.Rd | 6 VGAM-1.1-3/VGAM/man/geometric.Rd | 2 VGAM-1.1-3/VGAM/man/gev.Rd | 8 VGAM-1.1-3/VGAM/man/gevUC.Rd | 2 VGAM-1.1-3/VGAM/man/gew.Rd | 2 VGAM-1.1-3/VGAM/man/gompertz.Rd | 2 VGAM-1.1-3/VGAM/man/gordlink.Rd | 2 VGAM-1.1-3/VGAM/man/gpd.Rd | 6 VGAM-1.1-3/VGAM/man/gpdUC.Rd | 2 VGAM-1.1-3/VGAM/man/grain.us.Rd | 2 VGAM-1.1-3/VGAM/man/grc.Rd | 6 VGAM-1.1-3/VGAM/man/gumbel.Rd | 8 VGAM-1.1-3/VGAM/man/gumbelUC.Rd | 2 VGAM-1.1-3/VGAM/man/guplot.Rd | 4 VGAM-1.1-3/VGAM/man/hatvalues.Rd | 10 VGAM-1.1-3/VGAM/man/hdeff.Rd | 4 VGAM-1.1-3/VGAM/man/hdeffsev.Rd | 2 VGAM-1.1-3/VGAM/man/hormone.Rd | 6 VGAM-1.1-3/VGAM/man/hspider.Rd | 2 VGAM-1.1-3/VGAM/man/huber.Rd | 2 VGAM-1.1-3/VGAM/man/huberUC.Rd | 5 VGAM-1.1-3/VGAM/man/hyperg.Rd | 2 VGAM-1.1-3/VGAM/man/hypersecant.Rd | 4 VGAM-1.1-3/VGAM/man/hzeta.Rd | 4 VGAM-1.1-3/VGAM/man/hzetaUC.Rd | 2 VGAM-1.1-3/VGAM/man/identitylink.Rd | 2 VGAM-1.1-3/VGAM/man/inv.binomial.Rd | 6 VGAM-1.1-3/VGAM/man/inv.gaussianff.Rd | 4 VGAM-1.1-3/VGAM/man/inv.lomax.Rd | 2 VGAM-1.1-3/VGAM/man/inv.lomaxUC.Rd | 2 VGAM-1.1-3/VGAM/man/inv.paralogistic.Rd | 2 VGAM-1.1-3/VGAM/man/inv.paralogisticUC.Rd | 2 VGAM-1.1-3/VGAM/man/is.crossing.Rd |only VGAM-1.1-3/VGAM/man/lambertW.Rd | 2 VGAM-1.1-3/VGAM/man/laplace.Rd | 2 VGAM-1.1-3/VGAM/man/laplaceUC.Rd | 2 VGAM-1.1-3/VGAM/man/latvar.Rd | 6 VGAM-1.1-3/VGAM/man/leipnik.Rd | 4 VGAM-1.1-3/VGAM/man/lerch.Rd | 2 VGAM-1.1-3/VGAM/man/leukemia.Rd | 6 VGAM-1.1-3/VGAM/man/levy.Rd | 2 VGAM-1.1-3/VGAM/man/lgammaUC.Rd | 2 VGAM-1.1-3/VGAM/man/lgammaff.Rd | 4 VGAM-1.1-3/VGAM/man/lindley.Rd | 4 VGAM-1.1-3/VGAM/man/lino.Rd | 4 VGAM-1.1-3/VGAM/man/linoUC.Rd | 4 VGAM-1.1-3/VGAM/man/lirat.Rd | 2 VGAM-1.1-3/VGAM/man/lms.bcg.Rd | 4 VGAM-1.1-3/VGAM/man/lms.bcn.Rd | 8 VGAM-1.1-3/VGAM/man/lms.yjn.Rd | 6 VGAM-1.1-3/VGAM/man/logF.Rd | 7 VGAM-1.1-3/VGAM/man/logF.UC.Rd | 4 VGAM-1.1-3/VGAM/man/logUC.Rd | 2 VGAM-1.1-3/VGAM/man/logclink.Rd | 2 VGAM-1.1-3/VGAM/man/logff.Rd | 38 VGAM-1.1-3/VGAM/man/logistic.Rd | 8 VGAM-1.1-3/VGAM/man/logitlink.Rd | 2 VGAM-1.1-3/VGAM/man/loglapUC.Rd | 2 VGAM-1.1-3/VGAM/man/loglaplace.Rd | 6 VGAM-1.1-3/VGAM/man/loglinb2.Rd | 4 VGAM-1.1-3/VGAM/man/loglinb3.Rd | 4 VGAM-1.1-3/VGAM/man/loglink.Rd | 2 VGAM-1.1-3/VGAM/man/logloglink.Rd | 2 VGAM-1.1-3/VGAM/man/lognormal.Rd | 2 VGAM-1.1-3/VGAM/man/logofflink.Rd | 2 VGAM-1.1-3/VGAM/man/lomax.Rd | 2 VGAM-1.1-3/VGAM/man/lomaxUC.Rd | 2 VGAM-1.1-3/VGAM/man/lqnorm.Rd | 2 VGAM-1.1-3/VGAM/man/lvplot.Rd | 4 VGAM-1.1-3/VGAM/man/lvplot.qrrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/lvplot.rrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/makehamUC.Rd | 2 VGAM-1.1-3/VGAM/man/maxwell.Rd | 2 VGAM-1.1-3/VGAM/man/maxwellUC.Rd | 2 VGAM-1.1-3/VGAM/man/mccullagh89.Rd | 4 VGAM-1.1-3/VGAM/man/meplot.Rd | 4 VGAM-1.1-3/VGAM/man/micmen.Rd | 6 VGAM-1.1-3/VGAM/man/mills.ratio.Rd | 2 VGAM-1.1-3/VGAM/man/mix2normal.Rd | 4 VGAM-1.1-3/VGAM/man/model.framevlm.Rd | 2 VGAM-1.1-3/VGAM/man/model.matrixvlm.Rd | 4 VGAM-1.1-3/VGAM/man/multilogitlink.Rd | 3 VGAM-1.1-3/VGAM/man/multinomial.Rd | 27 VGAM-1.1-3/VGAM/man/nakagami.Rd | 2 VGAM-1.1-3/VGAM/man/nbcanlink.Rd | 6 VGAM-1.1-3/VGAM/man/nbordlink.Rd | 2 VGAM-1.1-3/VGAM/man/negbinomial.Rd | 45 VGAM-1.1-3/VGAM/man/negbinomial.size.Rd | 4 VGAM-1.1-3/VGAM/man/normal.vcm.Rd | 2 VGAM-1.1-3/VGAM/man/notdocumentedyet.Rd | 14 VGAM-1.1-3/VGAM/man/oalog.Rd | 1 VGAM-1.1-3/VGAM/man/oalogUC.Rd | 1 VGAM-1.1-3/VGAM/man/oilog.Rd | 1 VGAM-1.1-3/VGAM/man/oilogUC.Rd | 1 VGAM-1.1-3/VGAM/man/ordpoisson.Rd | 2 VGAM-1.1-3/VGAM/man/ordsup.Rd | 2 VGAM-1.1-3/VGAM/man/otlog.Rd | 1 VGAM-1.1-3/VGAM/man/otlogUC.Rd | 1 VGAM-1.1-3/VGAM/man/paralogistic.Rd | 2 VGAM-1.1-3/VGAM/man/paralogisticUC.Rd | 2 VGAM-1.1-3/VGAM/man/paretoIV.Rd | 6 VGAM-1.1-3/VGAM/man/paretoIVUC.Rd | 4 VGAM-1.1-3/VGAM/man/paretoff.Rd | 4 VGAM-1.1-3/VGAM/man/perks.Rd | 4 VGAM-1.1-3/VGAM/man/persp.qrrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/pgamma.deriv.Rd | 2 VGAM-1.1-3/VGAM/man/plotdeplot.lmscreg.Rd | 2 VGAM-1.1-3/VGAM/man/plotqrrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/plotqtplot.lmscreg.Rd | 2 VGAM-1.1-3/VGAM/man/plotrcim0.Rd | 15 VGAM-1.1-3/VGAM/man/plotvgam.Rd | 2 VGAM-1.1-3/VGAM/man/plotvgam.control.Rd | 2 VGAM-1.1-3/VGAM/man/pneumo.Rd | 2 VGAM-1.1-3/VGAM/man/poissonff.Rd | 6 VGAM-1.1-3/VGAM/man/polonoUC.Rd | 2 VGAM-1.1-3/VGAM/man/pordlink.Rd | 2 VGAM-1.1-3/VGAM/man/posbernoulli.t.Rd | 8 VGAM-1.1-3/VGAM/man/posbinomial.Rd | 6 VGAM-1.1-3/VGAM/man/posnegbinUC.Rd | 2 VGAM-1.1-3/VGAM/man/posnegbinomial.Rd | 4 VGAM-1.1-3/VGAM/man/pospoisUC.Rd | 2 VGAM-1.1-3/VGAM/man/pospoisson.Rd | 13 VGAM-1.1-3/VGAM/man/powerlink.Rd | 2 VGAM-1.1-3/VGAM/man/prats.Rd | 2 VGAM-1.1-3/VGAM/man/predictqrrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/predictvglm.Rd | 2 VGAM-1.1-3/VGAM/man/prentice74.Rd | 2 VGAM-1.1-3/VGAM/man/probitlink.Rd | 2 VGAM-1.1-3/VGAM/man/propodds.Rd | 6 VGAM-1.1-3/VGAM/man/qrrvglm.control.Rd | 4 VGAM-1.1-3/VGAM/man/qtplot.lmscreg.Rd | 2 VGAM-1.1-3/VGAM/man/rayleigh.Rd | 2 VGAM-1.1-3/VGAM/man/rayleighUC.Rd | 2 VGAM-1.1-3/VGAM/man/rcqo.Rd | 6 VGAM-1.1-3/VGAM/man/rdiric.Rd | 2 VGAM-1.1-3/VGAM/man/rec.exp1.Rd | 2 VGAM-1.1-3/VGAM/man/rec.normal.Rd | 2 VGAM-1.1-3/VGAM/man/reciprocallink.Rd | 2 VGAM-1.1-3/VGAM/man/residualsvglm.Rd | 6 VGAM-1.1-3/VGAM/man/riceff.Rd | 2 VGAM-1.1-3/VGAM/man/rigff.Rd | 2 VGAM-1.1-3/VGAM/man/rlplot.gevff.Rd | 2 VGAM-1.1-3/VGAM/man/rootogram4vglm.Rd | 16 VGAM-1.1-3/VGAM/man/rrar.Rd | 2 VGAM-1.1-3/VGAM/man/rrvglm-class.Rd | 4 VGAM-1.1-3/VGAM/man/rrvglm.Rd | 8 VGAM-1.1-3/VGAM/man/rrvglm.control.Rd | 2 VGAM-1.1-3/VGAM/man/s.Rd | 2 VGAM-1.1-3/VGAM/man/sc.studentt2.Rd | 2 VGAM-1.1-3/VGAM/man/simplex.Rd | 4 VGAM-1.1-3/VGAM/man/sinmad.Rd | 2 VGAM-1.1-3/VGAM/man/sinmadUC.Rd | 2 VGAM-1.1-3/VGAM/man/skellam.Rd | 2 VGAM-1.1-3/VGAM/man/skewnormal.Rd | 4 VGAM-1.1-3/VGAM/man/slash.Rd | 4 VGAM-1.1-3/VGAM/man/specialsvglm.Rd |only VGAM-1.1-3/VGAM/man/sratio.Rd | 8 VGAM-1.1-3/VGAM/man/step4vglm.Rd | 4 VGAM-1.1-3/VGAM/man/studentt.Rd | 4 VGAM-1.1-3/VGAM/man/tikuv.Rd | 4 VGAM-1.1-3/VGAM/man/tobit.Rd | 2 VGAM-1.1-3/VGAM/man/topple.Rd | 2 VGAM-1.1-3/VGAM/man/toppleUC.Rd | 2 VGAM-1.1-3/VGAM/man/toxop.Rd | 4 VGAM-1.1-3/VGAM/man/triangle.Rd | 4 VGAM-1.1-3/VGAM/man/trplot.Rd | 2 VGAM-1.1-3/VGAM/man/trplot.qrrvglm.Rd | 2 VGAM-1.1-3/VGAM/man/truncparetoUC.Rd | 2 VGAM-1.1-3/VGAM/man/truncweibull.Rd | 2 VGAM-1.1-3/VGAM/man/ucberk.Rd | 4 VGAM-1.1-3/VGAM/man/undocumented-methods.Rd | 22 VGAM-1.1-3/VGAM/man/uninormal.Rd | 2 VGAM-1.1-3/VGAM/man/venice.Rd | 2 VGAM-1.1-3/VGAM/man/vgam-class.Rd | 2 VGAM-1.1-3/VGAM/man/vgam.Rd | 6 VGAM-1.1-3/VGAM/man/vgam.control.Rd | 2 VGAM-1.1-3/VGAM/man/vglm-class.Rd | 4 VGAM-1.1-3/VGAM/man/vglm.Rd | 10 VGAM-1.1-3/VGAM/man/vglm.control.Rd | 2 VGAM-1.1-3/VGAM/man/vglmff-class.Rd | 5 VGAM-1.1-3/VGAM/man/vonmises.Rd | 2 VGAM-1.1-3/VGAM/man/vsmooth.spline.Rd | 2 VGAM-1.1-3/VGAM/man/waldff.Rd | 2 VGAM-1.1-3/VGAM/man/weibullR.Rd | 16 VGAM-1.1-3/VGAM/man/weightsvglm.Rd | 4 VGAM-1.1-3/VGAM/man/wine.Rd | 9 VGAM-1.1-3/VGAM/man/yeo.johnson.Rd | 4 VGAM-1.1-3/VGAM/man/yip88.Rd | 4 VGAM-1.1-3/VGAM/man/yulesimon.Rd | 2 VGAM-1.1-3/VGAM/man/zanegbinomial.Rd | 4 VGAM-1.1-3/VGAM/man/zapoisUC.Rd | 2 VGAM-1.1-3/VGAM/man/zapoisson.Rd | 9 VGAM-1.1-3/VGAM/man/zero.Rd | 4 VGAM-1.1-3/VGAM/man/zeta.Rd | 21 VGAM-1.1-3/VGAM/man/zetaUC.Rd | 6 VGAM-1.1-3/VGAM/man/zetaff.Rd | 4 VGAM-1.1-3/VGAM/man/zibinomial.Rd | 2 VGAM-1.1-3/VGAM/man/zipebcom.Rd | 2 VGAM-1.1-3/VGAM/man/zipf.Rd | 2 VGAM-1.1-3/VGAM/man/zipoisUC.Rd | 2 VGAM-1.1-3/VGAM/man/zipoisson.Rd | 11 VGAM-1.1-3/VGAM/src/VGAM_init.c | 2 VGAM-1.1-3/VGAM/src/vdigami.f | 7 VGAM-1.1-3/VGAM/src/vgam.f | 476 +------- 582 files changed, 4182 insertions(+), 2145 deletions(-)
Title: Object Oriented Simulator of Marine Ecosystems
Description: The multispecies and individual-based model (IBM) 'OSMOSE'
(Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry
(2004) <doi:10.1139/f03-154>) focuses on fish species. This model assumes
opportunistic predation based on spatial co-occurrence and size adequacy
between a predator and its prey (size-based opportunistic predation). It
represents fish individuals grouped into schools, which are characterized by
their size, weight, age, taxonomy and geographical location (2D model), and
which undergo major processes of fish life cycle (growth, explicit predation,
natural and starvation mortalities, reproduction and migration) and fishing
exploitation. The model needs basic biological parameters that are often
available for a wide range of species, and which can be found in 'FishBase'
for instance (see <http://www.fishbase.org/search.php>), and fish spatial
distribution data. This package provides tools to build and run simulations
using the 'OSMOSE' model.
Author: Yunne-Jai Shin [aut] (<https://orcid.org/0000-0002-7259-9265>),
Travers Morgane [aut] (<https://orcid.org/0000-0003-1493-662X>),
Verley Philippe [aut] (<https://orcid.org/0000-0002-5686-2764>),
Ricardo Oliveros-Ramos [aut] (<https://orcid.org/0000-0002-8069-2101>),
Laure Velez [aut],
Nicolas Barrier [cre] (<https://orcid.org/0000-0002-1693-4719>),
Criscely Lujan [ctb],
Michael Hurtado [ctb],
Wencheng Lau-Medrano [ctb]
Maintainer: Nicolas Barrier <nicolas.barrier@ird.fr>
Diff between osmose versions 3.3.3 dated 2020-04-21 and 3.3.4 dated 2020-04-28
osmose-3.3.3/osmose/vignettes/plot_method_cache/html/unnamed-chunk-3_0854181c89df5db2da83f32489e3f2cf.rdb |only osmose-3.3.3/osmose/vignettes/plot_method_cache/html/unnamed-chunk-3_0854181c89df5db2da83f32489e3f2cf.rdx |only osmose-3.3.3/osmose/vignettes/plot_method_files |only osmose-3.3.4/osmose/DESCRIPTION | 8 osmose-3.3.4/osmose/MD5 | 44 +--- osmose-3.3.4/osmose/NAMESPACE | 1 osmose-3.3.4/osmose/R/aaa-.R | 2 osmose-3.3.4/osmose/R/cacheManager.R | 31 ++- osmose-3.3.4/osmose/inst/doc/create_run_read.R | 10 + osmose-3.3.4/osmose/inst/doc/create_run_read.Rmd | 28 ++- osmose-3.3.4/osmose/inst/doc/create_run_read.html | 56 ++++-- osmose-3.3.4/osmose/inst/doc/plot_method.R | 2 osmose-3.3.4/osmose/inst/doc/plot_method.Rmd | 4 osmose-3.3.4/osmose/inst/doc/plot_method.html | 90 +--------- osmose-3.3.4/osmose/man/cacheManager.Rd | 14 - osmose-3.3.4/osmose/vignettes/create_run_read.Rmd | 28 ++- osmose-3.3.4/osmose/vignettes/plot_method.Rmd | 4 osmose-3.3.4/osmose/vignettes/plot_method_cache/html/__packages | 1 osmose-3.3.4/osmose/vignettes/plot_method_cache/html/unnamed-chunk-3_dd3cbaaf27f998918b2cae58d1e3ea53.rdb |only osmose-3.3.4/osmose/vignettes/plot_method_cache/html/unnamed-chunk-3_dd3cbaaf27f998918b2cae58d1e3ea53.rdx |only 20 files changed, 160 insertions(+), 163 deletions(-)
Title: Exact Variable-Subset Selection in Linear Regression
Description: Exact and approximation algorithms for variable-subset
selection in ordinary linear regression models. Either compute all
submodels with the lowest residual sum of squares, or determine the
single-best submodel according to a pre-determined statistical
criterion. Hofmann et al. (2020) <10.18637/jss.v093.i03>.
Author: Marc Hofmann [aut, cre],
Cristian Gatu [aut],
Erricos J. Kontoghiorghes [aut],
Ana Colubi [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Martin Moene [cph] (for the GSL Lite library),
Microsoft Corporation [cph] (for the GSL Lite library),
Free Software Foundation, Inc. [cph] (for snippets from the GNU ISO C++
Library)
Maintainer: Marc Hofmann <marc.hofmann@gmail.com>
Diff between lmSubsets versions 0.4 dated 2019-03-07 and 0.5 dated 2020-04-28
DESCRIPTION | 15 ++---- MD5 | 24 +++++---- build/partial.rdb |binary inst/CITATION | 70 ++++++++++++++++++++++++----- inst/doc/lmSubsets.Rnw | 13 ++--- inst/doc/lmSubsets.pdf |binary man/lmSelect.Rd | 7 +- man/lmSubsets.Rd | 9 ++- src/include/mcs/subset/detail/dca_node.hh | 4 - src/include/mcs/subset/detail/dca_state.hh | 4 - vignettes/lmSubsets.Rnw | 13 ++--- vignettes/lmSubsets.bib | 11 ++-- vignettes/v92i05-1.tex |only vignettes/v92i05.tex |only 14 files changed, 111 insertions(+), 59 deletions(-)
Title: Factor-Adjusted Robust Multiple Testing
Description: Performs robust multiple testing for means in the presence of known and unknown latent factors presented in Fan et al.(2019) "FarmTest: Factor-Adjusted Robust Multiple Testing With Approximate False Discovery Control" <doi:10.1080/01621459.2018.1527700>.
Implements a series of adaptive Huber methods combined with fast data-drive tuning schemes proposed in Ke et al.(2019) "User-Friendly Covariance Estimation for Heavy-Tailed Distributions" <doi:10.1214/19-STS711> to estimate model parameters and construct test statistics that are robust against heavy-tailed and/or asymmetric error distributions.
Extensions to two-sample simultaneous mean comparison problems are also included.
As by-products, this package contains functions that compute adaptive Huber mean, covariance and regression estimators that are of independent interest.
Author: Xiaoou Pan [aut, cre],
Yuan Ke [aut],
Wen-Xin Zhou [aut]
Maintainer: Xiaoou Pan <xip024@ucsd.edu>
Diff between FarmTest versions 2.0.1 dated 2020-02-27 and 2.1.0 dated 2020-04-28
FarmTest-2.0.1/FarmTest/man/farm.cov.Rd |only FarmTest-2.0.1/FarmTest/man/farm.fdr.Rd |only FarmTest-2.0.1/FarmTest/man/farm.mean.Rd |only FarmTest-2.1.0/FarmTest/DESCRIPTION | 20 - FarmTest-2.1.0/FarmTest/MD5 | 32 + FarmTest-2.1.0/FarmTest/NAMESPACE | 9 FarmTest-2.1.0/FarmTest/R/FarmTest-package.R | 11 FarmTest-2.1.0/FarmTest/R/FarmTest.R | 200 +++++++---- FarmTest-2.1.0/FarmTest/R/RcppExports.R | 74 ++++ FarmTest-2.1.0/FarmTest/R/generateNs.R | 1 FarmTest-2.1.0/FarmTest/README.md | 73 +--- FarmTest-2.1.0/FarmTest/man/FarmTest-package.Rd | 12 FarmTest-2.1.0/FarmTest/man/farm.test.Rd | 46 +- FarmTest-2.1.0/FarmTest/man/huber.cov.Rd |only FarmTest-2.1.0/FarmTest/man/huber.mean.Rd |only FarmTest-2.1.0/FarmTest/man/huber.reg.Rd |only FarmTest-2.1.0/FarmTest/man/plot.farm.test.Rd |only FarmTest-2.1.0/FarmTest/man/print.farm.test.Rd | 9 FarmTest-2.1.0/FarmTest/man/summary.farm.test.Rd |only FarmTest-2.1.0/FarmTest/src/FarmTest.cpp | 388 ++++++++++++++--------- FarmTest-2.1.0/FarmTest/src/RcppExports.cpp | 276 +++++++++++++++- 21 files changed, 806 insertions(+), 345 deletions(-)
Title: Dynamic Comparative Public Opinion
Description: Estimates latent variables of public opinion cross-nationally and over time from sparse and incomparable survey data. 'DCPO' uses a population-level graded response model with country-specific item bias terms. Sampling is conducted with 'Stan'. References: Solt (2020) <doi:10.31235/osf.io/d5n9p>.
Author: Frederick Solt [aut, cre],
Trustees of Columbia University [cph]
Maintainer: Frederick Solt <frederick-solt@uiowa.edu>
Diff between DCPO versions 0.5.1 dated 2020-04-14 and 0.5.2 dated 2020-04-28
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 3 +++ R/dcpo.R | 3 +-- R/dcpo_xvt.R | 5 ++--- R/get_xvt_results.R | 4 ++-- R/summarize_dcpo_results.R | 2 +- man/dcpo.Rd | 3 +-- man/dcpo_xvt.Rd | 5 ++--- man/get_xvt_results.Rd | 4 ++-- man/summarize_dcpo_results.Rd | 2 +- 11 files changed, 28 insertions(+), 29 deletions(-)
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
Diff between CNVScope versions 3.0.6 dated 2020-04-27 and 3.0.8 dated 2020-04-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/additonal_examples.R | 9 ++++++++- inst/doc/additonal_examples.Rmd | 9 ++++++++- inst/doc/additonal_examples.html | 16 ++++++++++------ vignettes/additonal_examples.Rmd | 9 ++++++++- 6 files changed, 43 insertions(+), 18 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.17 dated 2020-04-06 and 1.18 dated 2020-04-28
DESCRIPTION | 9 MD5 | 24 - R/ChannelAttribution.R | 247 ++++++++++- man/ChannelAttribution-package.Rd | 4 man/auto_markov_model.Rd | 16 man/choose_order.Rd | 6 man/heuristic_models.Rd | 2 man/markov_model.Rd | 7 man/markov_model_mp.Rd | 22 - man/transition_matrix.Rd | 2 src/ChannelAttribution.cpp | 820 ++++++++++++++++++++++---------------- src/ChannelAttribution.h | 4 src/Makevars.win | 2 13 files changed, 759 insertions(+), 406 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource selection functions and step-selection functions <doi:10.1890/04-0953> and integrated step-selection functions <doi:10.1111/2041-210X.12528>), and simulation of space-use from fitted step-selection functions <doi:10.1002/ecs2.1771>.
Author: Johannes Signer [aut, cre],
Bjoern Reineking [ctb],
Brian Smith [ctb],
Ulrike Schlaegel [ctb],
Scott LaPoint [dtc]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Diff between amt versions 0.1.0 dated 2020-04-23 and 0.1.1 dated 2020-04-28
amt-0.1.0/amt/inst/doc/faq.R |only amt-0.1.0/amt/inst/doc/faq.Rmd |only amt-0.1.0/amt/inst/doc/faq.html |only amt-0.1.0/amt/vignettes/faq.Rmd |only amt-0.1.0/amt/vignettes/simulate_movement_cache |only amt-0.1.1/amt/DESCRIPTION | 6 +- amt-0.1.1/amt/MD5 | 51 +++++------------------- amt-0.1.1/amt/NAMESPACE | 2 amt-0.1.1/amt/R/amt.R | 2 amt-0.1.1/amt/R/hr_locoh.R | 6 +- amt-0.1.1/amt/build/partial.rdb |binary amt-0.1.1/amt/build/vignette.rds |binary amt-0.1.1/amt/inst/doc/p1_getting_started.html | 20 ++++----- amt-0.1.1/amt/inst/doc/p3_rsf.html | 42 +++++++++---------- amt-0.1.1/amt/inst/doc/p4_SSF.html | 12 ++--- amt-0.1.1/amt/inst/doc/p5_other_packages.html | 12 ++--- amt-0.1.1/amt/inst/tinytest/test_random_steps.R | 51 +++++++++++++++--------- 17 files changed, 98 insertions(+), 106 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
'Cramer V' for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.4.0 dated 2020-02-13 and 0.5.0 dated 2020-04-28
rstatix-0.4.0/rstatix/R/friedman_effesize.R |only rstatix-0.5.0/rstatix/DESCRIPTION | 16 rstatix-0.5.0/rstatix/MD5 | 119 +++---- rstatix-0.5.0/rstatix/NAMESPACE | 13 rstatix-0.5.0/rstatix/NEWS.md | 28 + rstatix-0.5.0/rstatix/R/add_significance.R | 1 rstatix-0.5.0/rstatix/R/adjust_pvalue.R | 3 rstatix-0.5.0/rstatix/R/anova_summary.R | 2 rstatix-0.5.0/rstatix/R/as_cor_mat.R | 1 rstatix-0.5.0/rstatix/R/binom_test.R | 4 rstatix-0.5.0/rstatix/R/chisq_test.R | 2 rstatix-0.5.0/rstatix/R/cochran_qtest.R | 7 rstatix-0.5.0/rstatix/R/cohens_d.R | 12 rstatix-0.5.0/rstatix/R/cor_reshape.R | 3 rstatix-0.5.0/rstatix/R/df.R |only rstatix-0.5.0/rstatix/R/factorial_design.R | 6 rstatix-0.5.0/rstatix/R/fisher_test.R | 4 rstatix-0.5.0/rstatix/R/freq_table.R | 24 - rstatix-0.5.0/rstatix/R/friedman_effsize.R |only rstatix-0.5.0/rstatix/R/games_howell_test.R | 10 rstatix-0.5.0/rstatix/R/get_pvalue_position.R | 71 +++- rstatix-0.5.0/rstatix/R/get_test_label.R | 9 rstatix-0.5.0/rstatix/R/mcnemar_test.R | 8 rstatix-0.5.0/rstatix/R/p_value.R | 18 - rstatix-0.5.0/rstatix/R/prop_test.R | 1 rstatix-0.5.0/rstatix/R/prop_trend_test.R | 1 rstatix-0.5.0/rstatix/R/reexports.R | 3 rstatix-0.5.0/rstatix/R/utilities.R | 19 - rstatix-0.5.0/rstatix/README.md | 368 +++++++++++++++------- rstatix-0.5.0/rstatix/inst/WORDLIST | 6 rstatix-0.5.0/rstatix/man/add_significance.Rd | 10 rstatix-0.5.0/rstatix/man/anova_summary.Rd | 3 rstatix-0.5.0/rstatix/man/anova_test.Rd | 18 - rstatix-0.5.0/rstatix/man/binom_test.Rd | 28 + rstatix-0.5.0/rstatix/man/chisq_test.Rd | 19 - rstatix-0.5.0/rstatix/man/cohens_d.Rd | 18 - rstatix-0.5.0/rstatix/man/cor_as_symbols.Rd | 7 rstatix-0.5.0/rstatix/man/cor_mark_significant.Rd | 7 rstatix-0.5.0/rstatix/man/cor_mat.Rd | 20 - rstatix-0.5.0/rstatix/man/cor_plot.Rd | 14 rstatix-0.5.0/rstatix/man/cor_test.Rd | 13 rstatix-0.5.0/rstatix/man/df_arrange.Rd |only rstatix-0.5.0/rstatix/man/df_get_var_names.Rd |only rstatix-0.5.0/rstatix/man/df_group_by.Rd |only rstatix-0.5.0/rstatix/man/df_label_value.Rd |only rstatix-0.5.0/rstatix/man/df_nest_by.Rd |only rstatix-0.5.0/rstatix/man/df_select.Rd |only rstatix-0.5.0/rstatix/man/df_split_by.Rd |only rstatix-0.5.0/rstatix/man/df_unite.Rd |only rstatix-0.5.0/rstatix/man/emmeans_test.Rd | 14 rstatix-0.5.0/rstatix/man/fisher_test.Rd | 20 - rstatix-0.5.0/rstatix/man/freq_table.Rd | 7 rstatix-0.5.0/rstatix/man/friedman_effsize.Rd | 13 rstatix-0.5.0/rstatix/man/get_pvalue_position.Rd | 61 ++- rstatix-0.5.0/rstatix/man/get_summary_stats.Rd | 12 rstatix-0.5.0/rstatix/man/get_test_label.Rd | 28 + rstatix-0.5.0/rstatix/man/kruskal_effsize.Rd | 10 rstatix-0.5.0/rstatix/man/mcnemar_test.Rd | 9 rstatix-0.5.0/rstatix/man/p_value.Rd | 24 + rstatix-0.5.0/rstatix/man/prop_test.Rd | 14 rstatix-0.5.0/rstatix/man/reexports.Rd | 5 rstatix-0.5.0/rstatix/man/replace_triangle.Rd | 3 rstatix-0.5.0/rstatix/man/sign_test.Rd | 25 + rstatix-0.5.0/rstatix/man/t_test.Rd | 31 + rstatix-0.5.0/rstatix/man/wilcox_effsize.Rd | 17 - rstatix-0.5.0/rstatix/man/wilcox_test.Rd | 28 + 66 files changed, 891 insertions(+), 346 deletions(-)
Title: Various Functions to Facilitate Visualization of Data and
Analysis
Description: When analyzing data, plots are a helpful tool for visualizing data and interpreting statistical models. This package provides a set of simple tools for building plots incrementally, starting with an empty plot region, and adding bars, data points, regression lines, error bars, gradient legends, density distributions in the margins, and even pictures. The package builds further on R graphics by simply combining functions and settings in order to reduce the amount of code to produce for the user. As a result, the package does not use formula input or special syntax, but can be used in combination with default R plot functions. Note: Most of the functions were part of the package 'itsadug', which is now split in two packages: 1. the package 'itsadug', which contains the core functions for visualizing and evaluating nonlinear regression models, and 2. the package 'plotfunctions', which contains more general plot functions.
Author: Jacolien van Rij [aut, cre]
Maintainer: Jacolien van Rij <vanrij.jacolien@gmail.com>
Diff between plotfunctions versions 1.3 dated 2017-08-30 and 1.4 dated 2020-04-28
DESCRIPTION | 13 MD5 | 105 - NAMESPACE | 1 R/plot.R | 3052 +++++++++++++++++++++++--------------------- R/plotfunctions.R | 4 R/util.R | 943 +++++++------ build/vignette.rds |binary inst/NEWS | 17 inst/doc/plotfunctions.R | 58 inst/doc/plotfunctions.Rmd | 30 inst/doc/plotfunctions.html | 904 ++++++++----- man/addInterval.Rd | 46 man/add_bars.Rd | 73 - man/add_n_points.Rd | 53 man/alpha.Rd | 41 man/alphaPalette.Rd | 43 man/check_normaldist.Rd | 45 man/color_contour.Rd | 58 man/convertFile.Rd | 39 man/dotplot_error.Rd | 64 man/drawDevArrows.Rd | 103 - man/emptyPlot.Rd | 75 - man/errorBars.Rd | 77 - man/fill_area.Rd | 50 man/findAbsMin.Rd | 25 man/find_n_neighbors.Rd | 25 man/firstLetterCap.Rd | 25 man/getArrowPos.Rd | 33 man/getCoords.Rd | 40 man/getDec.Rd | 25 man/getFigCoords.Rd | 36 man/getProps.Rd | 38 man/getRange.Rd | 25 man/getRatioCoords.Rd | 56 man/get_palette.Rd |only man/gradientLegend.Rd | 159 +- man/group_sort.Rd | 27 man/img.Rd | 6 man/inch2coords.Rd | 25 man/isColor.Rd | 37 man/legend_margin.Rd | 43 man/list2str.Rd | 29 man/marginDensityPlot.Rd | 73 - man/move_n_point.Rd | 25 man/orderBoxplot.Rd | 25 man/plot_error.Rd | 53 man/plot_image.Rd | 86 - man/plot_signifArea.Rd | 19 man/plotfunctions.Rd | 5 man/plotsurface.Rd | 88 - man/se.Rd | 31 man/sortBoxplot.Rd | 47 man/sortGroups.Rd | 25 vignettes/plotfunctions.Rmd | 30 54 files changed, 4097 insertions(+), 2958 deletions(-)
Title: Build Machine Learning Models Like Using Python's Scikit-Learn
Library in R
Description: The idea is to provide a standard interface
to users who use both R and Python for building machine learning models.
This package provides a scikit-learn's fit, predict interface to
train machine learning models in R.
Author: Manish Saraswat [aut, cre]
Maintainer: Manish Saraswat <manish06saraswat@gmail.com>
Diff between superml versions 0.5.2 dated 2020-02-24 and 0.5.3 dated 2020-04-28
DESCRIPTION | 10 MD5 | 34 +- NAMESPACE | 9 NEWS.md | 7 R/RcppExports.R | 143 +++++++++++ R/bm25.R | 16 - R/super_utils.R | 9 README.md | 6 inst/doc/Guide-to-CountVectorizer.html | 26 +- inst/doc/Guide-to-TfidfVectorizer.html | 28 +- inst/doc/introduction.html | 401 ++++++++++++++++----------------- man/bm25.Rd | 46 --- man/bm_25.Rd |only man/dot.Rd |only man/dotmat.Rd |only man/normalise1d.Rd |only man/normalise2d.Rd |only man/sort_index.Rd |only src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 132 ++++++++++ src/utils.cpp | 340 +++++++++++++++++++++++++++ 22 files changed, 902 insertions(+), 305 deletions(-)
Title: Block Diagonal Extraction or Replacement
Description: Several tools for handling block-matrix diagonals and similar
constructs are implemented. Block-diagonal matrices can be extracted or removed
using two small functions implemented here. In addition, non-square matrices
are supported. Block diagonal matrices occur when two dimensions of a data set
are combined along one edge of a matrix. For example, trade-flow data in the
'decompr' and 'gvc' packages have each country-industry combination occur along
both edges of the matrix.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between diagonals versions 1.0.1 dated 2020-01-08 and 5.2.0 dated 2020-04-28
diagonals-1.0.1/diagonals/NEWS |only diagonals-5.2.0/diagonals/DESCRIPTION | 8 +- diagonals-5.2.0/diagonals/MD5 | 20 +++--- diagonals-5.2.0/diagonals/NEWS.md |only diagonals-5.2.0/diagonals/R/diagonals.R | 5 - diagonals-5.2.0/diagonals/R/fatdiag.R | 4 - diagonals-5.2.0/diagonals/README.md | 18 +++-- diagonals-5.2.0/diagonals/build/vignette.rds |binary diagonals-5.2.0/diagonals/inst/doc/fatdiag.html | 51 +++++----------- diagonals-5.2.0/diagonals/man/diagonals.Rd | 2 diagonals-5.2.0/diagonals/man/fatdiag.Rd | 2 diagonals-5.2.0/diagonals/tests/testthat/test_fatdiag.R | 9 ++ 12 files changed, 58 insertions(+), 61 deletions(-)
Title: Export 'grid' Graphics as SVG
Description: Functions to export graphics drawn with package grid to SVG
format. Additional functions provide access to SVG features that
are not available in standard R graphics, such as hyperlinks,
animation, filters, masks, clipping paths, and gradient and pattern fills.
Author: Paul Murrell [cre, aut],
Simon Potter [aut]
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between gridSVG versions 1.7-1 dated 2019-03-29 and 1.7-2 dated 2020-04-28
DESCRIPTION | 7 +++---- MD5 | 22 +++++++++++----------- R/animate.R | 39 +++++++++++++++++++-------------------- R/griddev.R | 2 +- R/gridsvg.R | 23 +++++------------------ R/svg.R | 14 +++----------- build/vignette.rds |binary inst/NEWS.Rd | 16 +++++++++++++++- inst/doc/animation.pdf |binary inst/doc/extensibility.pdf |binary inst/doc/gridSVG.pdf |binary man/feColorMatrix.Rd | 2 +- 12 files changed, 58 insertions(+), 67 deletions(-)
Title: Tools for Interacting with the Brazilian Flora 2020
Description: Tools to quickly compile taxonomic and distribution data from
the Brazilian Flora 2020.
Author: Gustavo Carvalho
Maintainer: Gustavo Carvalho <gustavo.bio@gmail.com>
Diff between flora versions 0.3.0 dated 2017-12-04 and 0.3.4 dated 2020-04-28
DESCRIPTION | 8 ++++---- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS | 20 ++++++++++++++++++++ R/get.synonyms.R | 30 ++++++++++++++++++++++-------- R/get.taxa.R | 19 +++++++++++++++++-- R/get_domains.R | 9 ++------- R/get_endemism.R |only R/get_vegtype.R | 11 +++-------- R/sysdata.rda |binary data/plants.rda |binary man/flora.Rd | 1 - man/get.synonyms.Rd | 8 ++++++-- man/get.taxa.Rd | 11 +++++++++-- man/get_endemism.Rd |only 15 files changed, 98 insertions(+), 46 deletions(-)
Title: Efficiently Impute Large Scale Incomplete Matrix
Description: Efficiently impute large scale matrix with missing values via its unbiased low-rank matrix approximation. Our main approach is Hard-Impute algorithm proposed in <http://www.jmlr.org/papers/v11/mazumder10a.html>, which achieves highly computational advantage by truncated singular-value decomposition.
Author: Zhe Gao [aut, cre],
Jin Zhu [aut],
Junxian Zhu [aut],
Xueqin Wang [aut],
Yixuan Qiu [cph],
Gael Guennebaud [cph, ctb],
Jitse Niesen [cph, ctb],
Ray Gardner [ctb]
Maintainer: Zhe Gao <gaozh8@mail2.sysu.edu.cn>
Diff between eimpute versions 0.1.0 dated 2020-03-20 and 0.1.1 dated 2020-04-28
eimpute-0.1.0/eimpute/R/standard.R |only eimpute-0.1.1/eimpute/DESCRIPTION | 8 - eimpute-0.1.1/eimpute/MD5 | 23 +-- eimpute-0.1.1/eimpute/NEWS.md | 7 - eimpute-0.1.1/eimpute/R/RcppExports.R | 37 +++++ eimpute-0.1.1/eimpute/R/biscale.R |only eimpute-0.1.1/eimpute/R/eimpute.R | 3 eimpute-0.1.1/eimpute/R/r.search.R | 57 ++++---- eimpute-0.1.1/eimpute/man/biscale.Rd | 2 eimpute-0.1.1/eimpute/man/biscale.control.Rd | 2 eimpute-0.1.1/eimpute/man/r.search.Rd | 17 +- eimpute-0.1.1/eimpute/src/RcppExports.cpp | 80 +++++++++++ eimpute-0.1.1/eimpute/src/biscale.cpp |only eimpute-0.1.1/eimpute/src/matrixfit.cpp | 183 ++++++++++++++++++++++----- 14 files changed, 333 insertions(+), 86 deletions(-)