Title: Analysis and Visualization of Circular Data
Description: Tools for analyzing and visualizing circular data,
including scoring functions for relevant instruments and a
generalization of the bootstrapped structural summary method from
Zimmermann & Wright (2017) <doi:10.1177/1073191115621795> and
functions for creating publication-ready tables and figures from the
results. Future versions will include tools for circular fit and
reliability analyses, as well as visualization enhancements.
Author: Jeffrey Girard [aut, cre] (<https://orcid.org/0000-0002-7359-3746>),
Johannes Zimmermann [aut] (<https://orcid.org/0000-0001-6975-2356>),
Aidan Wright [aut] (<https://orcid.org/0000-0002-2369-0601>)
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between circumplex versions 0.3.5 dated 2020-01-09 and 0.3.6 dated 2020-04-29
DESCRIPTION | 24 +++++------ MD5 | 60 ++++++++++++++--------------- NAMESPACE | 8 +++ NEWS.md | 16 +++++++ R/ssm_oop.R | 34 +++++++++++----- R/ssm_visualization.R | 27 +++++++------ build/vignette.rds |binary inst/doc/intermediate-ssm-analysis.html | 8 +-- inst/doc/introduction-to-ssm-analysis.html | 12 ++--- inst/doc/using-instruments.html | 52 ++++++++++++------------- man/aw2009.Rd | 6 +- man/csie.Rd | 4 + man/csig.Rd | 4 + man/csip.Rd | 4 + man/csiv.Rd | 4 + man/ggsave.Rd | 26 ++++++------ man/igicr.Rd | 4 + man/iip32.Rd | 4 + man/iip64.Rd | 4 + man/iipsc.Rd | 4 + man/iis32.Rd | 4 + man/iis64.Rd | 4 + man/iitc.Rd | 4 + man/ipipipc.Rd | 4 + man/isc.Rd | 4 + man/jz2017.Rd | 6 +- man/mutate.Rd | 22 +++++----- man/pipe.Rd | 30 +++++++------- man/raw_iipsc.Rd | 4 + man/select.Rd | 22 +++++----- tests/testthat/test-ssm_analysis.R | 36 ++++++++--------- 31 files changed, 255 insertions(+), 190 deletions(-)
Title: Class-Agnostic Time Series
Description: Time series toolkit with identical behavior for all
time series classes: 'ts','xts', 'data.frame', 'data.table', 'tibble', 'zoo',
'timeSeries', 'tsibble', 'tis' or 'irts'. Also converts reliably between these classes.
Author: Christoph Sax [aut, cre] (<https://orcid.org/0000-0002-7192-7044>)
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tsbox versions 0.2.0 dated 2019-08-06 and 0.2.1 dated 2020-04-29
DESCRIPTION | 10 MD5 | 28 - NEWS.md | 7 R/convert_heuristic.R | 2 README.md | 1 build/vignette.rds |binary inst/doc/convert.html | 701 ++++++++++++++++++++------------------ inst/doc/ts-functions.html | 561 +++++++++++++++++------------- inst/doc/tsbox.html | 708 +++++++++++++++++++-------------------- man/copy_class.Rd | 9 man/ts_lag.Rd | 2 man/ts_plot.Rd | 3 man/ts_save.Rd | 9 man/ts_span.Rd | 5 tests/testthat/test_date_utils.R | 3 15 files changed, 1106 insertions(+), 943 deletions(-)
Title: Taxonomic Classes
Description: Provides taxonomic classes for
groupings of taxonomic names without data, and those
with data. Methods provided are "taxonomically aware", in
that they know about ordering of ranks, and methods that
filter based on taxonomy also filter associated data.
This package is described in the publication: "Taxa: An R
package implementing data standards and methods for
taxonomic data", Zachary S.L. Foster, Scott Chamberlain,
Niklaus J. Grünwald (2018) <doi:10.12688/f1000research.14013.2>.
Author: Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Zachary Foster [aut, cre] (<https://orcid.org/0000-0002-5075-0948>)
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
Diff between taxa versions 0.3.3 dated 2020-02-25 and 0.3.4 dated 2020-04-29
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 8 ++++++++ R/taxmap--class.R | 4 ++-- R/taxmap--parsers.R | 2 +- build/vignette.rds |binary inst/doc/taxa-introduction.html | 4 ++-- man/database_list.Rd | 4 +++- man/ex_hierarchies.Rd | 4 +++- man/ex_hierarchy1.Rd | 6 ++++-- man/ex_hierarchy2.Rd | 6 ++++-- man/ex_hierarchy3.Rd | 6 ++++-- man/ex_taxmap.Rd | 4 +++- man/ex_taxonomy.Rd | 4 +++- 14 files changed, 54 insertions(+), 32 deletions(-)
Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
Diff between metacoder versions 0.3.3 dated 2019-07-18 and 0.3.4 dated 2020-04-29
DESCRIPTION | 10 - MD5 | 154 ++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 5 R/calculations.R | 6 - R/heat_tree_matrix.R | 3 R/parsers.R | 7 - R/remove_ambiguous.R | 99 ++++++++++-------- R/tools.R | 13 ++ README.md | 2 build/vignette.rds |binary inst/doc/introduction.html | 15 +- man/ambiguous_patterns.Rd | 17 ++- man/ambiguous_synonyms.Rd |only man/apply_color_scale.Rd | 8 + man/as_phyloseq.Rd | 10 + man/calc_group_mean.Rd | 33 +++--- man/calc_group_median.Rd | 33 +++--- man/calc_group_rsd.Rd | 33 +++--- man/calc_group_stat.Rd | 34 ++++-- man/calc_n_samples.Rd | 36 ++++-- man/calc_obs_props.Rd | 33 +++--- man/calc_prop_samples.Rd | 36 ++++-- man/calc_taxon_abund.Rd | 32 +++--- man/capitalize.Rd |only man/compare_groups.Rd | 34 ++++-- man/complement.Rd | 5 man/convert_base.Rd | 8 + man/counts_to_presence.Rd | 35 ++++-- man/do_calc_on_num_cols.Rd | 11 +- man/filter_ambiguous_taxa.Rd | 18 ++- man/get_optimal_range.Rd | 10 + man/get_taxmap_cols.Rd | 9 - man/get_taxmap_data.Rd | 9 - man/get_taxmap_other_cols.Rd | 9 - man/get_taxmap_table.Rd | 9 - man/heat_tree.Rd | 81 ++++++++++----- man/heat_tree_matrix.Rd | 17 ++- man/hmp_otus.Rd | 7 - man/hmp_samples.Rd | 7 - man/is_ambiguous.Rd | 9 + man/layout_functions.Rd | 9 + man/limited_print.Rd | 8 + man/make_dada2_asv_table.Rd | 12 +- man/make_dada2_tax_table.Rd | 12 +- man/make_plot_legend.Rd | 38 +++++-- man/metacoder.Rd | 1 man/ncbi_taxon_sample.Rd | 24 +++- man/parse_dada2.Rd | 32 +++--- man/parse_edge_list.Rd | 26 ++-- man/parse_greengenes.Rd | 23 ++-- man/parse_mothur_tax_summary.Rd | 25 ++-- man/parse_mothur_taxonomy.Rd | 23 ++-- man/parse_newick.Rd | 23 ++-- man/parse_phylo.Rd | 23 ++-- man/parse_phyloseq.Rd | 23 ++-- man/parse_qiime_biom.Rd | 23 ++-- man/parse_rdp.Rd | 27 ++--- man/parse_seq_input.Rd | 8 + man/parse_silva_fasta.Rd | 23 ++-- man/parse_ubiome.Rd | 23 ++-- man/parse_unite_general.Rd | 23 ++-- man/primersearch_raw.Rd | 3 man/rarefy_obs.Rd | 34 +++--- man/read_lines_apply.Rd | 9 + man/rescale.Rd | 8 + man/rev_comp.Rd | 5 man/reverse.Rd | 5 man/run_primersearch.Rd | 10 + man/verify_taxmap.Rd | 9 - man/write_greengenes.Rd | 20 ++- man/write_mothur_taxonomy.Rd | 20 ++- man/write_rdp.Rd | 21 ++- man/write_silva_fasta.Rd | 20 ++- man/write_unite_general.Rd | 19 ++- man/zero_low_counts.Rd | 36 ++++-- tests/testthat/test--calculations.R | 4 tests/testthat/test--parsers_and_writers.R | 2 tests/testthat/test--simulated_pcr.R | 14 +- 79 files changed, 975 insertions(+), 591 deletions(-)
Title: Visualisation of High-Throughput Behavioural (i.e. Ethomics)
Data
Description: Extension of 'ggplot2' providing layers, scales and preprocessing functions
useful to represent behavioural variables that are recorded over multiple animals and days.
This package is part of the 'rethomics' framework <http://rethomics.github.io/>.
Author: Quentin Geissmann [aut, cre]
Maintainer: Quentin Geissmann <qgeissmann@gmail.com>
Diff between ggetho versions 0.3.5 dated 2020-04-05 and 0.3.6 dated 2020-04-29
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Structural Equation Modeling Tables
Description: For confirmatory factor analysis ('CFA') and structural equation
models ('SEM') estimated with the 'lavaan' package,
this package provides functions to create model summary tables and model
comparison tables for hypothesis testing. Tables can be produced in
'LaTeX', 'HTML', or comma separated variables ('CSV').
Author: Paul Johnson [aut, cre],
Benjamin Kite [aut]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between semTable versions 1.7 dated 2020-04-12 and 1.8 dated 2020-04-29
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/semtable.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Species Distribution Modelling
Description: An extensible framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time. For more information, please check the following paper:
Naimi, B., Araujo, M.B. (2016) <doi:10.1111/ecog.01881>.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.0-82 dated 2020-02-03 and 1.0-89 dated 2020-04-29
DESCRIPTION | 8 MD5 | 24 +- R/AAAClasses.R | 6 R/ensemble.R | 454 +++++++++------------------------------------------ R/plot.R | 88 ++++++++- R/predict.R | 18 +- R/sdm.R | 11 - R/sdmData.R | 6 R/sdmFormula.R | 8 R/show.R | 127 +++++++++++++- R/varImp.R | 30 +-- man/ensemble.Rd | 4 man/varImportance.Rd | 32 +++ 13 files changed, 371 insertions(+), 445 deletions(-)
Title: Project Management Tools
Description: Tools for data importation, recoding, and inspection.
There are functions to create new project
folders, R code templates, create uniquely named output
directories, and to quickly obtain a visual summary for each
variable in a data frame. The main feature here is the systematic
implementation of the "variable key" framework for data
importation and recoding. We are eager to have community feedback
about the variable key and the vignette about it. In version 1.7,
the function 'semTable' is removed. It was deprecated since 1.67.
That is provided in a separate package, 'semTable'.
Author: Paul Johnson [aut, cre],
Benjamin Kite [aut],
Charles Redmon [aut],
Jared Harpole [ctb],
Kenna Whitley [ctb],
Po-Yi Chen [ctb],
Shadi Pirhosseinloo [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between kutils versions 1.69 dated 2019-05-12 and 1.70 dated 2020-04-29
kutils-1.69/kutils/R/modelcomparison.R |only kutils-1.69/kutils/R/semTable.R |only kutils-1.69/kutils/man/compareLavaan.Rd |only kutils-1.69/kutils/man/detectNested.Rd |only kutils-1.69/kutils/man/markupConvert.Rd |only kutils-1.69/kutils/man/print.kutable.Rd |only kutils-1.69/kutils/man/semTable.Rd |only kutils-1.69/kutils/man/testtable.Rd |only kutils-1.70/kutils/DESCRIPTION | 24 +-- kutils-1.70/kutils/MD5 | 38 ++--- kutils-1.70/kutils/NAMESPACE | 11 - kutils-1.70/kutils/R/data.R | 2 kutils-1.70/kutils/R/peek.R | 126 ++++++++---------- kutils-1.70/kutils/R/variableKey.R | 20 +- kutils-1.70/kutils/build/vignette.rds |binary kutils-1.70/kutils/data/natlongsurv.RData |binary kutils-1.70/kutils/inst/doc/variablekey.Rnw | 2 kutils-1.70/kutils/inst/doc/variablekey.pdf |binary kutils-1.70/kutils/inst/unitTests/runit.VariableKey.R | 7 - kutils-1.70/kutils/man/isNA.Rd | 31 +--- kutils-1.70/kutils/man/natlongsurv.Rd | 2 kutils-1.70/kutils/man/peek.Rd | 111 ++++++--------- kutils-1.70/kutils/man/zapspace.Rd | 4 kutils-1.70/kutils/vignettes/variablekey.Rnw | 2 24 files changed, 160 insertions(+), 220 deletions(-)
Title: Handling Taxonomic Lists
Description: Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented as summary-methods.
Author: Miguel Alvarez [aut, cre] (<https://orcid.org/0000-0003-1500-1834>),
Zachary Foster [ctb] (<https://orcid.org/0000-0002-5075-0948>)
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between taxlist versions 0.1.7 dated 2020-01-10 and 0.1.8 dated 2020-04-29
taxlist-0.1.7/taxlist/R/add_concept.R |only taxlist-0.1.7/taxlist/R/add_synonym.R |only taxlist-0.1.7/taxlist/R/add_view.R |only taxlist-0.1.7/taxlist/R/auxiliary_functions.R |only taxlist-0.1.7/taxlist/R/basionym.R |only taxlist-0.1.7/taxlist/R/change_concept.R |only taxlist-0.1.7/taxlist/R/delete_name.R |only taxlist-0.1.7/taxlist/R/load_last.R |only taxlist-0.1.7/taxlist/R/synonyms.R |only taxlist-0.1.7/taxlist/R/update_concept.R |only taxlist-0.1.7/taxlist/R/update_name.R |only taxlist-0.1.7/taxlist/man/deprecated-functions.Rd |only taxlist-0.1.7/taxlist/tests/hidden_data |only taxlist-0.1.8/taxlist/DESCRIPTION | 27 - taxlist-0.1.8/taxlist/MD5 | 214 ++++----- taxlist-0.1.8/taxlist/NAMESPACE | 137 +++--- taxlist-0.1.8/taxlist/NEWS.md | 15 taxlist-0.1.8/taxlist/R/Easplist-data.R |only taxlist-0.1.8/taxlist/R/Extract.R | 56 ++ taxlist-0.1.8/taxlist/R/NULLing.R | 6 taxlist-0.1.8/taxlist/R/StartMessage.R | 5 taxlist-0.1.8/taxlist/R/accepted_name.R | 212 +++++++++ taxlist-0.1.8/taxlist/R/as.list.R | 42 + taxlist-0.1.8/taxlist/R/backup_object.R | 88 +++- taxlist-0.1.8/taxlist/R/clean.R | 54 ++ taxlist-0.1.8/taxlist/R/clean_strings.R | 59 ++ taxlist-0.1.8/taxlist/R/count_taxa.R | 120 ++++- taxlist-0.1.8/taxlist/R/deprecated-functions.R | 34 + taxlist-0.1.8/taxlist/R/df2taxlist.R | 79 +++ taxlist-0.1.8/taxlist/R/dissect_name.R | 40 + taxlist-0.1.8/taxlist/R/get_children.R | 76 +++ taxlist-0.1.8/taxlist/R/imports.R |only taxlist-0.1.8/taxlist/R/internal.R |only taxlist-0.1.8/taxlist/R/levels.R | 64 ++ taxlist-0.1.8/taxlist/R/match_names.R | 67 ++- taxlist-0.1.8/taxlist/R/merge_taxa.R | 99 ++++ taxlist-0.1.8/taxlist/R/print_name.R | 81 +++ taxlist-0.1.8/taxlist/R/replace_x.R | 82 +++ taxlist-0.1.8/taxlist/R/subset.R | 49 ++ taxlist-0.1.8/taxlist/R/summary.R | 80 +++ taxlist-0.1.8/taxlist/R/tax2traits.R | 49 +- taxlist-0.1.8/taxlist/R/taxlist-class.R | 38 + taxlist-0.1.8/taxlist/R/taxlist-package.R |only taxlist-0.1.8/taxlist/R/taxlist2taxmap.R |only taxlist-0.1.8/taxlist/R/taxon_names.R | 186 ++++++++ taxlist-0.1.8/taxlist/R/taxon_relations.R | 258 +++++++++++- taxlist-0.1.8/taxlist/R/taxon_traits.R | 102 ++++ taxlist-0.1.8/taxlist/R/taxon_views.R | 119 +++++ taxlist-0.1.8/taxlist/R/tnrs.R | 48 +- taxlist-0.1.8/taxlist/R/tv2taxlist.R | 61 ++ taxlist-0.1.8/taxlist/build/vignette.rds |binary taxlist-0.1.8/taxlist/inst/doc/taxlist-intro.Rmd | 2 taxlist-0.1.8/taxlist/inst/doc/taxlist-intro.html | 14 taxlist-0.1.8/taxlist/inst/extdata |only taxlist-0.1.8/taxlist/man/Deprecated-functions.Rd |only taxlist-0.1.8/taxlist/man/Easplist-data.Rd | 64 +- taxlist-0.1.8/taxlist/man/Extract.Rd | 109 ++--- taxlist-0.1.8/taxlist/man/accepted_name.Rd | 221 +++++----- taxlist-0.1.8/taxlist/man/add_nacolumn.Rd |only taxlist-0.1.8/taxlist/man/add_suffix.Rd |only taxlist-0.1.8/taxlist/man/as.list.Rd | 76 +-- taxlist-0.1.8/taxlist/man/backup_object.Rd | 159 ++++--- taxlist-0.1.8/taxlist/man/clean.Rd | 97 ++-- taxlist-0.1.8/taxlist/man/clean_once_taxlist.Rd |only taxlist-0.1.8/taxlist/man/clean_strings.Rd | 85 ++- taxlist-0.1.8/taxlist/man/count_taxa.Rd | 113 +++-- taxlist-0.1.8/taxlist/man/df2taxlist.Rd | 139 +++--- taxlist-0.1.8/taxlist/man/dissect_name.Rd | 87 ++-- taxlist-0.1.8/taxlist/man/get_children.Rd | 125 ++--- taxlist-0.1.8/taxlist/man/levels.Rd | 114 ++--- taxlist-0.1.8/taxlist/man/match_names.Rd | 144 +++--- taxlist-0.1.8/taxlist/man/merge_taxa.Rd | 143 +++--- taxlist-0.1.8/taxlist/man/overview_taxlist.Rd |only taxlist-0.1.8/taxlist/man/overview_taxon.Rd |only taxlist-0.1.8/taxlist/man/print_name.Rd | 174 ++++---- taxlist-0.1.8/taxlist/man/replace_x.Rd | 141 +++--- taxlist-0.1.8/taxlist/man/sort_backups.Rd |only taxlist-0.1.8/taxlist/man/subset.Rd | 112 ++--- taxlist-0.1.8/taxlist/man/summary.Rd | 153 +++---- taxlist-0.1.8/taxlist/man/tax2traits.Rd | 91 ++-- taxlist-0.1.8/taxlist/man/taxlist-class.Rd | 84 +-- taxlist-0.1.8/taxlist/man/taxlist-package.Rd | 78 +-- taxlist-0.1.8/taxlist/man/taxlist2taxmap.Rd |only taxlist-0.1.8/taxlist/man/taxon_names.Rd | 177 ++++---- taxlist-0.1.8/taxlist/man/taxon_relations.Rd | 214 +++++---- taxlist-0.1.8/taxlist/man/taxon_traits.Rd | 115 ++--- taxlist-0.1.8/taxlist/man/taxon_views.Rd | 152 +++---- taxlist-0.1.8/taxlist/man/tnrs.Rd | 85 ++- taxlist-0.1.8/taxlist/man/tv2taxlist.Rd | 101 ++-- taxlist-0.1.8/taxlist/man/two2one_df.Rd |only taxlist-0.1.8/taxlist/tests/testthat.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-Extract.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-accepted_name.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-add_suffix.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-as_list.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-backup_object.R |only taxlist-0.1.8/taxlist/tests/testthat/test-change_concept.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-clean.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-clean_strings.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-count_taxa.R | 14 taxlist-0.1.8/taxlist/tests/testthat/test-deprecated.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-df2taxlist.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-dissect_name.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-get_relatives.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-levels.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-load_last.R |only taxlist-0.1.8/taxlist/tests/testthat/test-match_names.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-merge_taxa.R | 10 taxlist-0.1.8/taxlist/tests/testthat/test-print_name.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-replace_x.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-subset.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-summary.R |only taxlist-0.1.8/taxlist/tests/testthat/test-synonyms.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-tax2traits.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-taxlist2taxmap.R |only taxlist-0.1.8/taxlist/tests/testthat/test-taxon_names.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-taxon_relations.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-taxon_traits.R | 5 taxlist-0.1.8/taxlist/tests/testthat/test-taxon_views.R | 4 taxlist-0.1.8/taxlist/tests/testthat/test-tv2taxlist.R | 4 taxlist-0.1.8/taxlist/vignettes/taxlist-intro.Rmd | 2 121 files changed, 3991 insertions(+), 2169 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.0.6 dated 2020-03-14 and 1.0.7 dated 2020-04-29
DESCRIPTION | 12 ++++---- MD5 | 8 ++--- NEWS.md | 6 ++++ inst/doc/jsmodule.html | 4 +- tests/testthat/shinytest/basic/tests/basicTest-expected/001.json | 14 ++++------ 5 files changed, 24 insertions(+), 20 deletions(-)
Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph] (<https://orcid.org/0000-0002-6269-1412>),
Nicolas Müller [aut],
Reto Bürgin [aut],
Pierre-Alexandre Fonta [aut],
Gilbert Ritschard [aut, cre, cph]
(<https://orcid.org/0000-0001-7776-0903>)
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 2.2-0 dated 2020-04-22 and 2.2-0.1 dated 2020-04-29
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 3 ++- NEWS | 8 ++++++++ R/seqdef.R | 4 ++-- build/vignette.rds |binary data/ex1.rda |binary data/ex2.rda |binary data/famform.rda |binary inst/NEWS.Rd | 11 +++++++++++ inst/doc/TraMineR-state-sequence.R | 1 - inst/doc/TraMineR-state-sequence.pdf |binary man/TraMineR-package.Rd | 2 +- man/seqdef.Rd | 12 ++++++------ man/seqdist.Rd | 16 ++++++++-------- 15 files changed, 57 insertions(+), 38 deletions(-)
Title: Easily Create Pretty Popup Messages (Modals) in 'Shiny'
Description: Easily create pretty popup messages (modals) in 'Shiny'. A modal can
contain text, images, OK/Cancel buttons, an input to get a response from the
user, and many more customizable options.
Author: Dean Attali [aut, cre] (R interface),
Tristan Edwards [aut] (sweetalert library)
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyalert versions 1.0 dated 2018-02-12 and 1.1 dated 2020-04-29
shinyalert-1.0/shinyalert/R/closeAlert.R |only shinyalert-1.0/shinyalert/man/closeAlert.Rd |only shinyalert-1.1/shinyalert/DESCRIPTION | 8 shinyalert-1.1/shinyalert/LICENSE | 2 shinyalert-1.1/shinyalert/MD5 | 37 + shinyalert-1.1/shinyalert/NAMESPACE | 1 shinyalert-1.1/shinyalert/NEWS.md | 12 shinyalert-1.1/shinyalert/R/shinyalert.R | 57 ++- shinyalert-1.1/shinyalert/R/useShinyalert.R | 15 shinyalert-1.1/shinyalert/README.md | 143 +++++-- shinyalert-1.1/shinyalert/build/vignette.rds |binary shinyalert-1.1/shinyalert/inst/doc/shinyalert.R | 2 shinyalert-1.1/shinyalert/inst/doc/shinyalert.Rmd | 95 +++-- shinyalert-1.1/shinyalert/inst/doc/shinyalert.html | 303 ++++++++++++++-- shinyalert-1.1/shinyalert/inst/examples/demo/ui.R | 8 shinyalert-1.1/shinyalert/inst/img/shinyalert-chain.gif |only shinyalert-1.1/shinyalert/inst/www/shared/swalservice |only shinyalert-1.1/shinyalert/inst/www/srcjs/shinyalert.js | 18 shinyalert-1.1/shinyalert/man/shinyalert.Rd | 79 +++- shinyalert-1.1/shinyalert/man/useShinyalert.Rd | 7 shinyalert-1.1/shinyalert/vignettes/shinyalert.Rmd | 95 +++-- 21 files changed, 709 insertions(+), 173 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct
a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes.
This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes
on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality
to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.6.0 dated 2020-04-10 and 0.6.1 dated 2020-04-29
insurancerating-0.6.0/insurancerating/R/plot_fitgam.R |only insurancerating-0.6.0/insurancerating/R/plot_tariff_classes.R |only insurancerating-0.6.0/insurancerating/R/relevel.R |only insurancerating-0.6.0/insurancerating/man/figures/example4-1.png |only insurancerating-0.6.0/insurancerating/man/figures/example5-1.png |only insurancerating-0.6.0/insurancerating/man/figures/example8a-1.png |only insurancerating-0.6.0/insurancerating/man/figures/unnamed-chunk-5-1.png |only insurancerating-0.6.0/insurancerating/man/figures/unnamed-chunk-6-1.png |only insurancerating-0.6.0/insurancerating/man/figures/unnamed-chunk-7-1.png |only insurancerating-0.6.0/insurancerating/man/figures/unnamed-chunk-8-1.png |only insurancerating-0.6.1/insurancerating/DESCRIPTION | 21 - insurancerating-0.6.1/insurancerating/MD5 | 114 +++++----- insurancerating-0.6.1/insurancerating/NAMESPACE | 49 ++++ insurancerating-0.6.1/insurancerating/NEWS.md | 6 insurancerating-0.6.1/insurancerating/R/add_prediction.R |only insurancerating-0.6.1/insurancerating/R/autoplot.fitgam.R |only insurancerating-0.6.1/insurancerating/R/autoplot.riskfactor.R | 11 insurancerating-0.6.1/insurancerating/R/autoplot.tariffclasses.R |only insurancerating-0.6.1/insurancerating/R/autoplot.univariate.R | 2 insurancerating-0.6.1/insurancerating/R/biggest_reference.R |only insurancerating-0.6.1/insurancerating/R/bootstrap_rmse.R |only insurancerating-0.6.1/insurancerating/R/check_normality.R |only insurancerating-0.6.1/insurancerating/R/check_overdispersion.R |only insurancerating-0.6.1/insurancerating/R/construct_tariff_classes.R | 2 insurancerating-0.6.1/insurancerating/R/model_performance.R |only insurancerating-0.6.1/insurancerating/R/period_to_months.R | 4 insurancerating-0.6.1/insurancerating/R/rating_factors.R | 28 +- insurancerating-0.6.1/insurancerating/R/reduce.R |only insurancerating-0.6.1/insurancerating/R/rmse.R |only insurancerating-0.6.1/insurancerating/R/univariate.R | 6 insurancerating-0.6.1/insurancerating/R/univariate_1freq.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_1freq_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_2avgsev.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_2avgsev_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_3riskpremium.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_3riskpremium_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_4loss_ratio.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_4loss_ratio_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_5avgpremium.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_5avgpremium_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_6exposure.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_6exposure_plot.R | 2 insurancerating-0.6.1/insurancerating/R/univariate_all.R | 5 insurancerating-0.6.1/insurancerating/R/univariate_all_plot.R | 2 insurancerating-0.6.1/insurancerating/R/utils.R |only insurancerating-0.6.1/insurancerating/R/zzz.R | 2 insurancerating-0.6.1/insurancerating/build/vignette.rds |binary insurancerating-0.6.1/insurancerating/inst/doc/vignette.pdf |binary insurancerating-0.6.1/insurancerating/man/add_prediction.Rd |only insurancerating-0.6.1/insurancerating/man/autoplot.bootstrap_rmse.Rd |only insurancerating-0.6.1/insurancerating/man/autoplot.check_normality.Rd |only insurancerating-0.6.1/insurancerating/man/autoplot.constructtariffclasses.Rd | 2 insurancerating-0.6.1/insurancerating/man/autoplot.fitgam.Rd | 4 insurancerating-0.6.1/insurancerating/man/autoplot.riskfactor.Rd | 3 insurancerating-0.6.1/insurancerating/man/autoplot.univariate.Rd | 2 insurancerating-0.6.1/insurancerating/man/biggest_reference.Rd | 2 insurancerating-0.6.1/insurancerating/man/bootstrap_rmse.Rd |only insurancerating-0.6.1/insurancerating/man/check_normality.Rd |only insurancerating-0.6.1/insurancerating/man/check_overdispersion.Rd |only insurancerating-0.6.1/insurancerating/man/construct_tariff_classes.Rd | 2 insurancerating-0.6.1/insurancerating/man/figures/bootstraprmse-1.png |only insurancerating-0.6.1/insurancerating/man/figures/example3a-1.png |binary insurancerating-0.6.1/insurancerating/man/figures/example3a1-1.png |only insurancerating-0.6.1/insurancerating/man/figures/example3b-1.png |only insurancerating-0.6.1/insurancerating/man/figures/example3c-1.png |only insurancerating-0.6.1/insurancerating/man/figures/normality-1.png |only insurancerating-0.6.1/insurancerating/man/figures/normalitysim-1.png |only insurancerating-0.6.1/insurancerating/man/get_quantiles.Rd |only insurancerating-0.6.1/insurancerating/man/model_performance.Rd |only insurancerating-0.6.1/insurancerating/man/period_to_months.Rd | 4 insurancerating-0.6.1/insurancerating/man/rating_factors.Rd | 8 insurancerating-0.6.1/insurancerating/man/rating_factors1.Rd | 20 + insurancerating-0.6.1/insurancerating/man/reduce.Rd |only insurancerating-0.6.1/insurancerating/man/rmse.Rd |only insurancerating-0.6.1/insurancerating/man/summary.reduce.Rd |only insurancerating-0.6.1/insurancerating/man/univariate.Rd | 6 insurancerating-0.6.1/insurancerating/man/univariate_all.Rd | 5 77 files changed, 212 insertions(+), 122 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Read Hierarchical Fixed Width Files
Description: Read hierarchical fixed width files like those commonly used by
many census data providers. Also allows for reading of data in chunks,
and reading 'gzipped' files without storing the full file in memory.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Joe Grover [ctb],
Mark Padgham [ctb],
Hadley Wickham [ctb] (Code adapted from readr),
Jim Hester [ctb] (Code adapted from readr),
Romain Francois [ctb] (Code adapted from readr),
R Core Team [ctb] (Code adapted from readr),
RStudio [cph, fnd] (Code adapted from readr),
Jukka Jylänki [ctb, cph] (Code adapted from readr),
Mikkel Jørgensen [ctb, cph] (Code adapted from readr),
University of Minnesota [cph]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between hipread versions 0.2.1 dated 2019-05-14 and 0.2.2 dated 2020-04-29
DESCRIPTION | 8 LICENSE | 678 ++++++++++++++-------------- MD5 | 82 +-- NAMESPACE | 46 - NEWS.md | 4 R/arg_checkers.R | 376 +++++++-------- R/callbacks.R | 275 +++++------ R/col_specs.R | 242 +++++----- R/hipread.R | 6 R/readh.R | 268 +++++------ R/readh_chunked.R | 220 ++++----- R/readh_freqs.R | 54 +- R/readh_yield.R | 162 +++--- R/utilities.R | 88 +-- R/yields.R | 253 +++++----- README.md | 80 +-- inst/extdata/test-basic.dat | 18 inst/extdata/test-enc-latin1.dat | 4 inst/extdata/test-enc-utf8.dat | 4 inst/extdata/test-enc-utf8bom.dat | 4 inst/extdata/test-whitespace.dat | 18 man/callback.Rd | 378 ++++++++++++++- man/hip_fwf_positions.Rd | 127 ++--- man/hip_rt.Rd | 48 +- man/hipread-package.Rd | 72 +-- man/hipread_example.Rd | 44 - man/hipread_freqs.Rd | 93 ++- man/hipread_long.Rd | 240 +++++----- man/hipread_long_chunked.Rd | 192 ++++---- man/hipread_long_yield.Rd | 353 ++++++++++---- tests/testthat.R | 8 tests/testthat/test-callback-compat.R | 108 ++-- tests/testthat/test-encoding.R | 100 ++-- tests/testthat/test-freqs.R | 64 +- tests/testthat/test-fwf.R | 20 tests/testthat/test-line-edge-cases.R | 90 +-- tests/testthat/test-list-chunk.R | 236 ++++----- tests/testthat/test-list-full.R | 114 ++-- tests/testthat/test-long-chunk.R | 350 +++++++------- tests/testthat/test-long-full.R | 466 +++++++++---------- tests/testthat/test-values.R | 54 +- tests/testthat/test-yield.R | 816 +++++++++++++++++----------------- 42 files changed, 3691 insertions(+), 3172 deletions(-)
Title: Wrappers for 'GDAL' Utilities Executables
Description: R's 'sf' package ships with self-contained 'GDAL'
executables, including a bare bones interface to several of the
'GDAL'-related utility programs collectively known as the 'GDAL'
utilities. For each of those utilities, this package provides an R
wrapper whose formal arguments closely mirror those of the 'GDAL'
command line interface. All of the utilities operate on data
stored in files and typically write their output to other
files. As a result, processing data stored in any of R's more
common spatial formats (i.e. those supported by the 'sp', 'sf',
and 'raster' packages) will require first writing to disk, then
processing with the package's wrapper functions before reading
back into R.
Author: Joshua O'Brien
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>
Diff between gdalUtilities versions 1.0.0 dated 2019-07-18 and 1.1.0 dated 2020-04-29
DESCRIPTION | 10 - MD5 | 28 ++--- R/process_args.R | 32 ++++-- R/zzz.R | 2 build/partial.rdb |binary man/gRasterize.Rd | 144 +++++++++++++-------------- man/gdal_grid.Rd | 211 ++++++++++++++++++++++------------------ man/gdal_rasterize.Rd | 162 +++++++++++++++++------------- man/gdal_translate.Rd | 223 ++++++++++++++++++++++++------------------ man/gdalbuildvrt.Rd | 156 ++++++++++++++++------------- man/gdaldem.Rd | 186 +++++++++++++++++++---------------- man/gdalinfo.Rd | 111 ++++++++++++--------- man/gdalwarp.Rd | 231 +++++++++++++++++++++++++------------------- man/nearblack.Rd | 125 +++++++++++++---------- man/ogr2ogr.Rd | 262 ++++++++++++++++++++++++++++++-------------------- 15 files changed, 1072 insertions(+), 811 deletions(-)
Title: Fast Probabilistic Record Linkage with Missing Data
Description: Implements a Fellegi-Sunter probabilistic record linkage model that allows for missing data
and the inclusion of auxiliary information. This includes functionalities to conduct a merge of two
datasets under the Fellegi-Sunter model using the Expectation-Maximization algorithm. In addition,
tools for preparing, adjusting, and summarizing data merges are included. The package implements methods
described in Enamorado, Fifield, and Imai (2019) ''Using a Probabilistic Model to Assist Merging of
Large-scale Administrative Records'', American Political Science Review and is available
at <http://imai.fas.harvard.edu/research/linkage.html>.
Author: Ted Enamorado [aut, cre],
Ben Fifield [aut],
Kosuke Imai [aut]
Maintainer: Ted Enamorado <ted.enamorado@gmail.com>
Diff between fastLink versions 0.5.0 dated 2018-11-12 and 0.6.0 dated 2020-04-29
DESCRIPTION | 29 +++++++++++++++-------------- MD5 | 38 +++++++++++++++++++------------------- R/blockData.R | 2 +- R/emlinkMARmov.R | 7 ++++--- R/fastLink-package.R | 12 ++++++------ R/fastLink.R | 2 +- R/gammaCK2par.R | 19 +++++++++++++++---- R/gammaCKpar.R | 35 ++++++++++++++++++++++++++++------- R/gammaKpar.R | 8 ++++---- R/gammaNUMCKpar.R | 7 ++++--- R/getMatches.R | 41 ++++++++++++++++++++++++++--------------- data/countyname_to_fips.RData |binary data/cps_statemovers.RData |binary data/irs_countymigration.RData |binary data/irs_statemigration.RData |binary data/samplematch.RData |binary data/statecode_to_fips.RData |binary man/blockData.Rd | 6 ++++++ man/fastLink-package.Rd | 12 ++++++------ man/getPatterns.Rd | 17 ++++++++++++++--- 20 files changed, 149 insertions(+), 86 deletions(-)
Title: System Native Font Finding
Description: Provides system native access to the font catalogue. As font
handling varies between systems it is difficult to correctly locate
installed fonts across different operating systems. The 'systemfonts'
package provides bindings to the native libraries on Windows, macOS and
Linux for finding font files that can then be used further by e.g. graphic
devices. The main use is intended to be from compiled code but 'systemfonts'
also provides access from R.
Author: Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
Devon Govett [aut] (Author of font-manager),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between systemfonts versions 0.2.0 dated 2020-04-16 and 0.2.1 dated 2020-04-29
systemfonts-0.2.0/systemfonts/inst/include/systemfonts.c |only systemfonts-0.2.1/systemfonts/DESCRIPTION | 6 - systemfonts-0.2.1/systemfonts/MD5 | 37 +++--- systemfonts-0.2.1/systemfonts/NEWS.md | 4 systemfonts-0.2.1/systemfonts/configure | 2 systemfonts-0.2.1/systemfonts/inst/include/systemfonts.h | 54 ++++++--- systemfonts-0.2.1/systemfonts/src/emoji.cpp | 19 +++ systemfonts-0.2.1/systemfonts/src/emoji.h | 6 - systemfonts-0.2.1/systemfonts/src/font_metrics.cpp | 39 ++++--- systemfonts-0.2.1/systemfonts/src/font_metrics.h | 7 - systemfonts-0.2.1/systemfonts/src/ft_cache.cpp | 47 +++++--- systemfonts-0.2.1/systemfonts/src/ft_cache.h | 14 +- systemfonts-0.2.1/systemfonts/src/init.cpp | 3 systemfonts-0.2.1/systemfonts/src/string_metrics.cpp | 40 ++++--- systemfonts-0.2.1/systemfonts/src/string_metrics.h | 3 systemfonts-0.2.1/systemfonts/src/string_shape.cpp | 21 +-- systemfonts-0.2.1/systemfonts/src/string_shape.h | 46 +++++++- systemfonts-0.2.1/systemfonts/src/systemfonts.cpp | 83 ++++++++++----- systemfonts-0.2.1/systemfonts/src/systemfonts.h | 11 - systemfonts-0.2.1/systemfonts/src/utils.h | 27 +++- 20 files changed, 318 insertions(+), 151 deletions(-)
Title: Tools for Conducting and Analyzing Respirometry Experiments
Description: Provides tools to enable the researcher to more precisely conduct
respirometry experiments. Strong emphasis is on aquatic respirometry. Tools
focus on helping the researcher setup and conduct experiments. Functions for
analysis of resulting respirometry data are also provided. This package
provides tools for intermittent, flow-through, and closed respirometry
techniques.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between respirometry versions 1.0.2 dated 2020-01-26 and 1.1.0 dated 2020-04-29
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NEWS | 8 ++++++-- R/calc_b.R | 26 ++++++++++++++++++++------ R/calc_pcrit.R | 45 +++++++++++++++++++++++++-------------------- man/calc_b.Rd | 7 ++++++- 6 files changed, 68 insertions(+), 39 deletions(-)
Title: Non-Parametric Tests of Independence Between Random Vectors
Description: Functions for non-parametric tests of independence (mutual or serial) between some quantitative random vectors.
Author: Pierre Lafaye De Micheaux [aut, cre],
Martin Bilodeau [aut],
Yanan Fan [aut],
Spiridon Penev [aut],
Donna Salopek [aut],
Cleve Moler [cph] (LAPACK/BLAS routines in src),
Jack Dongarra [cph] (LAPACK/BLAS routines in src),
Richard Hanson [cph] (LAPACK/BLAS routines in src),
Sven Hammarling [cph] (LAPACK/BLAS routines in src),
Jeremy Du Croz [cph] (LAPACK/BLAS routines in src)
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between IndependenceTests versions 0.3 dated 2020-04-20 and 0.4 dated 2020-04-29
DESCRIPTION | 30 +++++++++++++++++++----- MD5 | 15 ++++++------ inst/CITATION | 11 +++------ inst/HISTORY | 7 +++-- src/Cnhat.cpp | 52 ++++++++++++++++++++++--------------------- src/IndependenceTests_init.c | 2 + src/cubature1.cpp | 2 - src/mycomplex.h |only src/phinhat.cpp | 11 ++++----- 9 files changed, 76 insertions(+), 54 deletions(-)
More information about IndependenceTests at CRAN
Permanent link
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, Ph.D. (2016) <DOI: 10.1016/j.ejor.2016.03.059>
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.2 dated 2020-01-07 and 3.3 dated 2020-04-29
DESCRIPTION | 10 +++++----- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS | 17 +++++++++++++++++ R/plp.R |only R/roc.dea.R | 12 ++++++------ R/roc.hdf.R | 12 ++++++------ R/roc.sf.R | 12 ++++++------ man/dataset.airplane.2017.Rd | 2 +- man/dm.dynamic.bc.Rd | 3 +-- man/plp.Rd |only man/roc.dea.Rd | 4 ++-- man/target.arrival.dea.Rd | 4 ++-- man/target.arrival.hdf.Rd | 4 ++-- man/target.arrival.sf.Rd | 4 ++-- 15 files changed, 65 insertions(+), 46 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and robustness analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Sebastien Da Veiga, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Loic Le Gratiet, Paul Lemaitre, Amandine Marrel, Anouar Meynaoui, Barry L. Nelson, Filippo Monari, Roelof Oomen, Oldrich Rakovec, Bernardo Ramos, Olivier Roustant, Eunhye Song, Jeremy Staum, Roman Sueur, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.18.1 dated 2020-04-07 and 1.19.0 dated 2020-04-29
DESCRIPTION | 8 MD5 | 34 +-- NAMESPACE | 8 NEWS | 18 + R/nodeggplot.R | 2 R/pcc.R | 19 +- R/shapleyPermEx.R | 37 +-- R/shapleyPermRand.R | 4 R/shapleySubsetMc.R | 417 ++++++++++++++++++++++++--------------------- R/sobolrank.R |only R/src.R | 23 +- man/pcc.Rd | 9 man/sensitivity-package.Rd | 3 man/shapleyPermEx.Rd | 5 man/shapleyPermRand.Rd | 5 man/shapleySubsetMc.Rd | 10 - man/sobolrank.Rd |only man/src.Rd | 11 - man/weightTSA.Rd | 11 - 19 files changed, 354 insertions(+), 270 deletions(-)
Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data.
Fasta-formatted proteomes (eg from Uniprot) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted.
Quantitative proteomics measurements frequently contain multiple NA values, due to physical absence of given peptides in some samples, limitations in sensitivity or other reasons.
The functions provided here help to inspect graphically the data to investigate the nature of NA-values via their respective replicate measurements and to help/confirm the choice of NA-replacement by low random values.
Dedicated filtering and statistical testing using the framework of package 'limma' <doi:10.18129/B9.bioc.limma> can be run, enhanced by multiple rounds of NA-replacements to provide robustness towards rare stochastic events.
Multi-species samples, as frequently used in benchmark-tests (eg Navarro et al 2016 <doi:10.1038/nbt.3685>, Ramus et al 2016 <doi:10.1016/j.jprot.2015.11.011>), can be run with special options separating the data into sub-groups during normalization and testing.
Subsequently, ROC curves can be constructed to compare multiple analysis approaches.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrProteo versions 1.0.0 dated 2020-01-08 and 1.1.1 dated 2020-04-29
wrProteo-1.0.0/wrProteo/R/matrixNAneighbourImputet.R |only wrProteo-1.1.1/wrProteo/DESCRIPTION | 21 - wrProteo-1.1.1/wrProteo/MD5 | 70 ++-- wrProteo-1.1.1/wrProteo/NAMESPACE | 40 +- wrProteo-1.1.1/wrProteo/R/AAmass.R |only wrProteo-1.1.1/wrProteo/R/convAASeq2mass.R |only wrProteo-1.1.1/wrProteo/R/countNoOfCommonPeptides.R | 4 wrProteo-1.1.1/wrProteo/R/massDeFormula.R |only wrProteo-1.1.1/wrProteo/R/matrixNAinspect.R | 4 wrProteo-1.1.1/wrProteo/R/matrixNAneighbourImpute.R |only wrProteo-1.1.1/wrProteo/R/plotROC.R | 2 wrProteo-1.1.1/wrProteo/R/readFasta2.R | 7 wrProteo-1.1.1/wrProteo/R/readMaxQuantFile.R |only wrProteo-1.1.1/wrProteo/R/readPDExport.R |only wrProteo-1.1.1/wrProteo/R/readProlineFile.R | 83 +++-- wrProteo-1.1.1/wrProteo/R/readUCSCgtf.R |only wrProteo-1.1.1/wrProteo/R/readUniProtExport.R |only wrProteo-1.1.1/wrProteo/R/summarizeForROC.R | 17 - wrProteo-1.1.1/wrProteo/R/testRobustToNAimputation.R | 22 - wrProteo-1.1.1/wrProteo/build |only wrProteo-1.1.1/wrProteo/inst/doc |only wrProteo-1.1.1/wrProteo/inst/extdata/UCSC_hg38_chr11extr.gtf |only wrProteo-1.1.1/wrProteo/inst/extdata/deUniProt_hg38chr11extr.tab |only wrProteo-1.1.1/wrProteo/inst/extdata/exampleProtDiscov1.txt |only wrProteo-1.1.1/wrProteo/inst/extdata/exampleProtDiscov1_Rheader.txt |only wrProteo-1.1.1/wrProteo/inst/extdata/proteinGroupsMaxQuantUps1.txt |only wrProteo-1.1.1/wrProteo/man/AAmass.Rd |only wrProteo-1.1.1/wrProteo/man/combineMultFilterNAimput.Rd | 136 ++++---- wrProteo-1.1.1/wrProteo/man/convAASeq2mass.Rd |only wrProteo-1.1.1/wrProteo/man/countNoOfCommonPeptides.Rd | 103 +++--- wrProteo-1.1.1/wrProteo/man/extrSpeciesAnnot.Rd | 76 ++-- wrProteo-1.1.1/wrProteo/man/massDeFormula.Rd |only wrProteo-1.1.1/wrProteo/man/matrixNAinspect.Rd | 116 +++--- wrProteo-1.1.1/wrProteo/man/matrixNAneighbourImpute.Rd | 146 ++++---- wrProteo-1.1.1/wrProteo/man/plotROC.Rd | 140 ++++---- wrProteo-1.1.1/wrProteo/man/razorNoFilter.Rd | 98 +++-- wrProteo-1.1.1/wrProteo/man/readFasta2.Rd | 114 +++--- wrProteo-1.1.1/wrProteo/man/readMaxQuantFile.Rd |only wrProteo-1.1.1/wrProteo/man/readPDExport.Rd |only wrProteo-1.1.1/wrProteo/man/readProlineFile.Rd | 111 +++--- wrProteo-1.1.1/wrProteo/man/readUCSCgtf.Rd |only wrProteo-1.1.1/wrProteo/man/readUniProtExport.Rd |only wrProteo-1.1.1/wrProteo/man/removeSampleInList.Rd | 89 ++--- wrProteo-1.1.1/wrProteo/man/summarizeForROC.Rd | 128 ++++--- wrProteo-1.1.1/wrProteo/man/test2grp.Rd | 104 +++--- wrProteo-1.1.1/wrProteo/man/testRobustToNAimputation.Rd | 166 +++++----- wrProteo-1.1.1/wrProteo/vignettes |only 47 files changed, 1005 insertions(+), 792 deletions(-)
Title: Cases of COVID-19 in the United States
Description: A wrapper around the 'COVID Tracking Project API'
<https://covidtracking.com/api/> providing data on cases of COVID-19
in the US.
Author: Amanda Dobbyn [aut, cre]
Maintainer: Amanda Dobbyn <amanda.e.dobbyn@gmail.com>
Diff between covid19us versions 0.1.2 dated 2020-04-11 and 0.1.3 dated 2020-04-29
DESCRIPTION | 6 +- MD5 | 15 +++-- NAMESPACE | 2 R/get.R | 72 ++++++++++++++++++++++++- R/globals.R | 7 ++ README.md | 131 +++++++++++++++++++++++++++++++++++++--------- man/figures |only man/get_info_covid19us.Rd |only man/refresh_covid19us.Rd |only tests/testthat/test-all.R | 10 +++ 10 files changed, 208 insertions(+), 35 deletions(-)
Title: Text Plots
Description: Visualise complex relations in texts. This is done by providing functionalities for displaying
text co-occurrence networks, text correlation networks, dependency relationships as well as text clustering.
Feel free to join the effort of providing interesting text visualisations.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Sacha Epskamp [ctb, cph] (code in R/matrix_reduction.R adapted from the
qgraph package version 1.4.0 which is GPL-2 licensed),
Ingo Feinerer and Kurt Hornik [ctb, cph] (partial code in
R/textplot_corlines.R adapted from the tm package version 0.4 which
is GPL-2 licensed)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between textplot versions 0.1.0 dated 2020-04-28 and 0.1.1 dated 2020-04-29
DESCRIPTION | 6 +++--- MD5 | 11 ++++++++--- NEWS.md | 5 +++++ build |only data/example_btm.RData |binary inst |only vignettes |only 7 files changed, 16 insertions(+), 6 deletions(-)
Title: Import Financial Data from the 'SimFin' Project
Description: Uses the 'SimFin' (SIMmplifying FINnance) api at <https://simfin.com/data/access/api> to download financial data straight into your R session.
It includes financial statements -- balance sheet, cash flow and income statement -- and adjusted daily price of stocks.
The available data is comprehensive, going back to 2005 and available for quarters (Q1, Q2, Q3, Q4) and years (FY).
Author: Marcelo S. Perlin
Maintainer: Marcelo S. Perlin <marceloperlin@gmail.com>
Diff between simfinR versions 0.2.1 dated 2020-02-26 and 0.2.2 dated 2020-04-29
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/get_fin_statements.R | 3 ++- R/get_single_fin_statement.R | 5 ++++- man/simfinR_get_fin_statements.Rd | 3 ++- 6 files changed, 22 insertions(+), 13 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.7.5 dated 2020-03-10 and 0.8.0 dated 2020-04-29
DESCRIPTION | 10 - MD5 | 22 +-- NAMESPACE | 2 R/create_filter_table.R |only R/filter_raw_data.R |only R/get_eurostat_bulk.R | 17 ++ R/get_eurostat_data.R | 297 ++++++++++++++++++++++----------------------- R/get_eurostat_raw.R | 5 R/search_eurostat_dsd.R | 2 man/create_filter_table.Rd |only man/filter_raw_data.Rd |only man/get_eurostat_data.Rd | 23 ++- man/search_eurostat_dsd.Rd | 2 tests/testthat/test-all.R | 81 +++++++++--- 14 files changed, 269 insertions(+), 192 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.4.5 dated 2019-01-03 and 1.4.6 dated 2020-04-29
DESCRIPTION | 6 +++--- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 2 ++ NEWS | 5 +++++ R/diveStats.R | 2 +- build/vignette.rds |binary inst/doc/diveMove.R | 2 +- inst/doc/diveMove.pdf |binary man/TDRcalibrate-accessors.Rd | 2 +- man/bout-misc.Rd | 2 +- man/bouts2MLE.Rd | 2 +- man/bouts2NLS.Rd | 2 +- man/bouts3NLS.Rd | 2 +- man/calibrateSpeed.Rd | 2 +- man/detDive-internal.Rd | 2 +- man/diveModel-class.Rd | 2 +- man/diveStats.Rd | 2 +- man/extractDive-methods.Rd | 2 +- man/plotDiveModel-methods.Rd | 2 +- man/plotTDR-methods.Rd | 2 +- man/plotZOC-methods.Rd | 2 +- man/timeBudget-methods.Rd | 2 +- 22 files changed, 47 insertions(+), 40 deletions(-)
Title: Display User Feedback in Shiny Apps
Description: Easily display user feedback in Shiny apps.
Author: Andy Merlino [aut, cre],
Patrick Howard [aut]
Maintainer: Andy Merlino <andy.merlino@tychobra.com>
Diff between shinyFeedback versions 0.1.0 dated 2018-08-20 and 0.2.0 dated 2020-04-29
shinyFeedback-0.1.0/shinyFeedback/R/feedback-wrappers.R |only shinyFeedback-0.1.0/shinyFeedback/R/snackbar-wrappers.R |only shinyFeedback-0.1.0/shinyFeedback/R/snackbar.R |only shinyFeedback-0.1.0/shinyFeedback/inst/css |only shinyFeedback-0.1.0/shinyFeedback/inst/img/snackbar_gif.gif |only shinyFeedback-0.1.0/shinyFeedback/inst/srcjs |only shinyFeedback-0.1.0/shinyFeedback/man/feedbackDanger.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/feedbackSuccess.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/feedbackWarning.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/showSnackbar.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/snackbar.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/snackbarDanger.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/snackbarSuccess.Rd |only shinyFeedback-0.1.0/shinyFeedback/man/snackbarWarning.Rd |only shinyFeedback-0.2.0/shinyFeedback/DESCRIPTION | 31 shinyFeedback-0.2.0/shinyFeedback/LICENSE |only shinyFeedback-0.2.0/shinyFeedback/MD5 | 81 +- shinyFeedback-0.2.0/shinyFeedback/NAMESPACE | 31 shinyFeedback-0.2.0/shinyFeedback/NEWS.md | 16 shinyFeedback-0.2.0/shinyFeedback/R/dependencies.R |only shinyFeedback-0.2.0/shinyFeedback/R/feedback.R | 162 ++-- shinyFeedback-0.2.0/shinyFeedback/R/hideFeedback.R |only shinyFeedback-0.2.0/shinyFeedback/R/loadingButton.R |only shinyFeedback-0.2.0/shinyFeedback/R/showFeedback.R |only shinyFeedback-0.2.0/shinyFeedback/R/showToast.R |only shinyFeedback-0.2.0/shinyFeedback/R/useShinyFeedback.R | 70 + shinyFeedback-0.2.0/shinyFeedback/R/valueBoxModule.R |only shinyFeedback-0.2.0/shinyFeedback/README.md | 30 shinyFeedback-0.2.0/shinyFeedback/build/vignette.rds |binary shinyFeedback-0.2.0/shinyFeedback/inst/assets |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/loading-button-and-toast.R |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/loading-button-and-toast.Rmd |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/loading-button-and-toast.html |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/shinyFeedback-intro.R | 194 +---- shinyFeedback-0.2.0/shinyFeedback/inst/doc/shinyFeedback-intro.Rmd | 269 ++----- shinyFeedback-0.2.0/shinyFeedback/inst/doc/shinyFeedback-intro.html | 368 ++++------ shinyFeedback-0.2.0/shinyFeedback/inst/doc/valueBoxModule.R |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/valueBoxModule.Rmd |only shinyFeedback-0.2.0/shinyFeedback/inst/doc/valueBoxModule.html |only shinyFeedback-0.2.0/shinyFeedback/inst/examples |only shinyFeedback-0.2.0/shinyFeedback/man/feedback.Rd | 80 +- shinyFeedback-0.2.0/shinyFeedback/man/hideFeedback.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/loadingButton.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/resetLoadingButton.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/showFeedback.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/showToast.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/useShinyFeedback.Rd | 28 shinyFeedback-0.2.0/shinyFeedback/man/valueBoxModule.Rd |only shinyFeedback-0.2.0/shinyFeedback/man/valueBoxModuleUI.Rd |only shinyFeedback-0.2.0/shinyFeedback/vignettes/loading-button-and-toast.Rmd |only shinyFeedback-0.2.0/shinyFeedback/vignettes/loadingButton.mp4 |only shinyFeedback-0.2.0/shinyFeedback/vignettes/shinyFeedback-intro.Rmd | 269 ++----- shinyFeedback-0.2.0/shinyFeedback/vignettes/showToast.mp4 |only shinyFeedback-0.2.0/shinyFeedback/vignettes/valueBoxModule.Rmd |only 54 files changed, 743 insertions(+), 886 deletions(-)
Title: Power and Sample Size Calculation for eQTL Analysis
Description: Power and sample size calculation for eQTL analysis
based on ANOVA or simple linear regression. It can also calculate power/sample size
for testing the association of a SNP to a continuous type phenotype.
Author: Xianjun Dong [aut, ctb],
Tzuu-Wang Chang [aut, ctb],
Scott T. Weiss [aut, ctb],
Weiliang Qiu [aut, cre]
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>
Diff between powerEQTL versions 0.1.3 dated 2017-01-24 and 0.1.7 dated 2020-04-29
DESCRIPTION | 20 ++-- MD5 | 34 ++++--- NAMESPACE | 56 +++++++----- NEWS | 109 +++++++++++++----------- R/powerEQTL.scRNAseq.R |only R/powerLME.R |only R/powerLMEnoCov.R |only R/ssEQTL.ANOVA.R | 200 ++++++++++++++++++++++----------------------- man/minEffectEQTL.ANOVA.Rd | 2 man/minMAFeQTL.ANOVA.Rd | 2 man/minMAFeQTL.sLR.Rd | 2 man/minSlopeEQTL.sLR.Rd | 2 man/powerEQTL.ANOVA.Rd | 2 man/powerEQTL.ANOVA2.Rd | 2 man/powerEQTL.sLR.Rd | 2 man/powerEQTL.scRNAseq.Rd |only man/powerLME.Rd |only man/powerLMEnoCov.Rd |only man/ssEQTL.ANOVA.Rd | 2 man/ssEQTL.ANOVA2.Rd | 2 man/ssEQTL.sLR.Rd | 2 21 files changed, 235 insertions(+), 204 deletions(-)
Title: Missing Outcome Data in Health Economic Evaluation
Description: Contains a suite of functions for health economic evaluations with missing outcome data.
The package can fit different types of statistical models under a fully Bayesian approach using the software 'JAGS' (which should be installed locally and which is loaded in 'missingHE' via the 'R' package 'R2jags').
Three classes of models can be fitted under a variety of missing data assumptions: selection models, pattern mixture models and hurdle models.
In addition to model fitting, 'missingHE' provides a set of specialised functions to assess model convergence and fit, and to summarise the statistical and economic results using different types of measures and graphs.
The methods implemented are described in Mason (2018) <doi:10.1002/hec.3793>, Molenberghs (2000) <doi:10.1007/978-1-4419-0300-6_18> and Gabrio (2019) <doi:10.1002/sim.8045>.
Author: Andrea Gabrio [aut, cre]
Maintainer: Andrea Gabrio <ucakgab@ucl.ac.uk>
Diff between missingHE versions 1.3.2 dated 2020-01-08 and 1.4.0 dated 2020-04-29
DESCRIPTION | 12 MD5 | 106 +-- NAMESPACE | 4 R/anyBars.R |only R/coef.missingHE.R |only R/data.R | 1 R/data_read_hurdle.R | 605 +++++++++++++++----- R/data_read_pattern.R | 291 +++++++-- R/data_read_selection.R | 577 +++++++++++++++---- R/diagnostic.R | 240 ++++++- R/fb.R |only R/hurdle.R | 511 ++++++++++++---- R/isAnyArgBar.R |only R/isBar.R |only R/nobars_.R |only R/pattern.R | 244 +++++--- R/plot.missingHE.R | 7 R/ppc.R | 219 ++++++- R/print.missingHE.R | 2 R/prior_hurdle.R | 356 +++++++---- R/prior_pattern.R | 85 ++ R/prior_selection.R | 180 +++++ R/run_hurdle.R | 222 ++++--- R/run_pattern.R | 154 +++-- R/run_selection.R | 330 +++++++--- R/selection.R | 456 ++++++++++----- R/summary.missingHE.R | 6 R/write_hurdle.R | 1359 ++++++++++++++++++++++++++++++++------------- R/write_pattern.R | 458 ++++++++++----- R/write_selection.R | 1065 ++++++++++++++++++++++++++--------- data/MenSS.RData |binary man/MenSS.Rd | 91 +-- man/anyBars.Rd |only man/coef.missingHE.Rd |only man/data_read_hurdle.Rd | 125 ++-- man/data_read_pattern.Rd | 77 +- man/data_read_selection.Rd | 104 +-- man/diagnostic.Rd | 206 +++--- man/fb.Rd |only man/hurdle.Rd | 483 ++++++++------- man/isAnyArgBar.Rd |only man/isBar.Rd |only man/jagsresults.Rd | 243 ++++---- man/nobars_.Rd |only man/pattern.Rd | 455 +++++++-------- man/pic.Rd | 166 ++--- man/plot.missingHE.Rd | 133 ++-- man/ppc.Rd | 146 ++-- man/print.missingHE.Rd | 77 +- man/prior_hurdle.Rd | 124 ++-- man/prior_pattern.Rd | 102 ++- man/prior_selection.Rd | 114 ++- man/run_hurdle.Rd | 94 +-- man/run_pattern.Rd | 88 +- man/run_selection.Rd | 70 +- man/selection.Rd | 457 +++++++-------- man/summary.missingHE.Rd | 72 +- man/write_hurdle.Rd | 134 ++-- man/write_pattern.Rd | 127 ++-- man/write_selection.Rd | 126 ++-- 60 files changed, 7557 insertions(+), 3747 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
François Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.3.0 dated 2020-04-27 and 2.3.1 dated 2020-04-29
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 7 R/remove_labels.R | 19 +- R/to_factor.R | 9 - inst/doc/intro_labelled.R | 59 ++++++ inst/doc/intro_labelled.Rmd | 132 +++++++++++++++ inst/doc/intro_labelled.html | 350 ++++++++++++++++++++++++++++++----------- man/remove_labels.Rd | 4 tests/testthat/test-labelled.r | 24 ++ vignettes/approaches.drawio |only vignettes/approaches.png |only vignettes/intro_labelled.Rmd | 132 +++++++++++++++ 13 files changed, 639 insertions(+), 125 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-27 0.2-1
2011-06-20 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-27 1.0-1
Title: Response Surface Analysis
Description: Advanced response surface analysis. The main function RSA computes
and compares several nested polynomial regression models (full second- or
third-order polynomial, shifted and rotated squared difference model,
rising ridge surfaces, basic squared difference model, asymmetric or
level-dependent congruence effect models). The package provides plotting
functions for 3d wireframe surfaces, interactive 3d plots, and contour plots.
Calculates many surface parameters (a1 to a5, principal axes, stationary point,
eigenvalues) and provides standard, robust, or bootstrapped standard errors
and confidence intervals for them.
Author: Felix Schönbrodt [cre, aut],
Sarah Humberg [aut]
Maintainer: Felix Schönbrodt <felix@nicebread.de>
Diff between RSA versions 0.9.13 dated 2018-12-14 and 0.10.0 dated 2020-04-29
DESCRIPTION | 25 +++++----- MD5 | 48 ++++++++++---------- NAMESPACE | 2 R/RSA.R | 123 +++++++++++++++++++++++++++++++++++++++-------------- R/RSA.ST.R | 5 +- R/aictab.R | 99 ++++++++++++++++++++++++++++-------------- R/getPar.R | 11 ++++ R/helpers.R | 61 +++++++++++++++++++++++++- R/helpers_cubic.R | 26 ++++++++--- R/imports.R | 3 - R/plot.RSA.R | 25 +++++++++- R/print.RSA.R | 78 ++++++++++++++++++++++----------- inst/News.Rd | 38 ++++++++++++++++ man/RSA.Rd | 56 +++++++++++++++++++----- man/RSA.ST.Rd | 16 +++++- man/aictab.Rd | 26 +++++++---- man/caRange.Rd | 13 +++++ man/clRange.Rd | 3 + man/confint.RSA.Rd | 12 ++++- man/demoRSA.Rd | 32 +++++++++++-- man/motcon.Rd | 4 + man/motcon2.Rd | 4 + man/movieRSA.Rd | 13 ++++- man/plotRSA.Rd | 89 ++++++++++++++++++++++++++++---------- tests |only 25 files changed, 615 insertions(+), 197 deletions(-)
Title: Genome-Wide Association Study with SNP-Set Methods
Description: By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.
Author: Kosuke Hamazaki [aut, cre],
Hiroyoshi Iwata [aut, ctb]
Maintainer: Kosuke Hamazaki <hamazaki@ut-biomet.org>
Diff between RAINBOWR versions 0.1.14 dated 2019-11-14 and 0.1.17 dated 2020-04-29
DESCRIPTION | 12 MD5 | 96 ++--- NAMESPACE | 5 R/RGWAS.epistasis.R | 6 R/RGWAS.multisnp.R | 6 R/RGWAS.normal.R | 11 R/functions_for_RGWAS.R | 33 + R/other_useful_functions.R | 638 ++++++++++++++++++++++++++++++++++++++ README.md | 13 build/vignette.rds |binary inst/CITATION |only inst/doc/RAINBOWR.R | 29 - inst/doc/RAINBOWR.Rmd | 9 inst/doc/RAINBOWR.html | 621 ++++++++++++++++++++++++------------ man/EM3.cpp.Rd | 16 man/EM3.linker.cpp.Rd | 25 + man/EMM.cpp.Rd | 29 + man/EMM1.cpp.Rd | 23 + man/EMM2.cpp.Rd | 17 - man/MAF.cut.Rd | 3 man/RAINBOWR.Rd | 1 man/RGWAS.epistasis.Rd | 38 +- man/RGWAS.multisnp.Rd | 56 ++- man/RGWAS.normal.Rd | 41 +- man/RGWAS.twostep.Rd | 73 +++- man/RGWAS.twostep.epi.Rd | 61 ++- man/Rice_Zhao_etal.Rd | 6 man/Rice_geno_map.Rd | 6 man/Rice_geno_score.Rd | 6 man/Rice_pheno.Rd | 6 man/SS_gwas.Rd | 21 - man/See.Rd | 16 man/estPhylo.Rd |only man/genetrait.Rd | 29 + man/manhattan.Rd | 20 - man/manhattan.plus.Rd | 14 man/manhattan2.Rd | 18 - man/manhattan3.Rd | 11 man/modify.data.Rd | 12 man/score.calc.LR.MC.Rd | 32 + man/score.calc.LR.Rd | 31 + man/score.calc.MC.Rd | 16 man/score.calc.Rd | 15 man/score.calc.epistasis.LR.Rd | 24 + man/score.calc.epistasis.score.Rd | 23 + man/score.calc.score.MC.Rd | 31 + man/score.calc.score.Rd | 30 + man/score.linker.cpp.Rd | 12 man/spectralG.cpp.Rd | 14 vignettes/RAINBOWR.Rmd | 9 50 files changed, 1788 insertions(+), 476 deletions(-)
Title: A Collection of Nonparametric Hypothesis Tests
Description: Contains the following 5 nonparametric hypothesis tests:
The Sign Test,
The 2 Sample Median Test,
Miller's Jackknife Procedure,
Cochran's Q Test, &
The Stuart-Maxwell Test.
Author: D. Lukke Sweet
Maintainer: D. Lukke Sweet <dlukkesweet@gmail.com>
Diff between nonpar versions 1.0.1 dated 2017-04-25 and 1.0.2 dated 2020-04-29
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
Diff between CNVScope versions 3.0.8 dated 2020-04-28 and 3.0.9 dated 2020-04-29
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/additonal_examples.R | 4 ++-- inst/doc/additonal_examples.Rmd | 4 ++-- inst/doc/additonal_examples.html | 32 ++++++++++++++++++++++++++------ vignettes/additonal_examples.Rmd | 4 ++-- 7 files changed, 41 insertions(+), 21 deletions(-)
Title: Read 'Unisens' Data
Description: Provides the ability to read 'Unisens' data into R. 'Unisens' is a universal data format for multi sensor data.
Author: Martin Penzel [ctb, cre],
Jürgen Stumpp [aut],
Jörg Ottenbacher [ctb],
Stephan Grund [ctb],
movisens GmbH [cph]
Maintainer: Martin Penzel <Martin.Penzel@movisens.com>
Diff between unisensR versions 0.3.2 dated 2020-02-09 and 0.3.3 dated 2020-04-29
DESCRIPTION | 10 - MD5 | 23 +- NAMESPACE | 1 NEWS.md | 6 R/unisensR.R | 144 +++++++++++++++ man/getUnisensSignalSampleCount.Rd |only man/readUnisensEventEntry.Rd | 46 ++--- man/readUnisensSignalEntry.Rd | 60 ++++-- man/readUnisensStartTime.Rd | 40 ++-- man/readUnisensValuesEntry.Rd | 46 ++--- tests/testthat/testSignalEntryImport.R | 276 ++++++++++++++++++++++++++++++ tests/testthat/testSignalSampleCounting.R |only tests/unisensExample/acc.csv |only tests/unisensExample/unisens.xml | 6 14 files changed, 549 insertions(+), 109 deletions(-)
Title: Identification and Analysis of ceRNA Regulation
Description: Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, For predictive ceRNA relationship pairs, this package
provides several downstream analysis algorithms, including regulatory network
analysis and functional annotation analysis, as well as survival prognosis analysis
based on expression of ceRNA ternary pair.
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer: Mengying Zhang <zhangmengying@hrbmu.edu.cn>
Diff between CeRNASeek versions 2.1.2 dated 2020-01-11 and 2.1.3 dated 2020-04-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ceRNA.cor.R | 14 ++++++++------ man/ceRNA.cor.Rd | 1 + 4 files changed, 16 insertions(+), 13 deletions(-)
Title: Fast Kernel Sums
Description: Implements the method of Hofmeyr, D.P. (2019) <DOI:10.1109/TPAMI.2019.2930501> for fast evaluation of univariate kernel smoothers based on recursive computations.
Applications to the basic problems of density and regression function estimation are provided, as well as some projection pursuit methods
for which the objective is based on non-parametric functionals of the projected density, or conditional density of a response given projected
covariates.
Author: David P. Hofmeyr
Maintainer: David P. Hofmeyr <dhofmeyr@sun.ac.za>
Diff between FKSUM versions 0.1.3 dated 2020-01-07 and 0.1.4 dated 2020-04-29
DESCRIPTION | 6 +-- MD5 | 36 ++++++++++++------ NAMESPACE | 15 ++++++- R/PPR_WORKS.R | 52 +++++++++++++++++++++++--- R/fk_ICA.R | 29 ++++++++++++++ R/fk_density.R | 33 ++++++++++++++++ R/fk_mdh.R | 32 +++++++++++++++- R/fk_regression.R | 86 ++++++++++++++++++++++++++++++++++++++----- R/fk_sum.R | 8 ++++ build/partial.rdb |binary inst |only man/fk_mdh.Rd | 5 +- man/fk_regression.Rd | 23 ++--------- man/plot.fk_ICA.Rd |only man/plot.fk_density.Rd |only man/plot.fk_mdh.Rd |only man/plot.fk_ppr.Rd |only man/plot.fk_regression.Rd |only man/predict.fk_ppr.Rd | 1 man/predict.fk_regression.Rd |only man/print.fk_ICA.Rd |only man/print.fk_density.Rd |only man/print.fk_mdh.Rd |only man/print.fk_ppr.Rd |only man/print.fk_regression.Rd |only 25 files changed, 268 insertions(+), 58 deletions(-)
Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are otherwise
performed manually. This includes setting up unit testing, test
coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio'
projects, and more.
Author: Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between usethis versions 1.6.0 dated 2020-04-09 and 1.6.1 dated 2020-04-29
DESCRIPTION | 6 - MD5 | 122 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 27 +++++- R/create.R | 11 +- R/github-action.R | 14 +++ R/github.R | 2 R/pkgdown.R | 23 +++-- R/proj.R | 7 + R/tidyverse.R | 49 ++---------- inst/WORDLIST | 1 man/create_package.Rd | 9 +- man/tidyverse.Rd | 10 -- man/use_github_action.Rd | 16 +++ man/use_pkgdown.Rd | 14 +-- tests/testthat/helper.R | 48 +++++------ tests/testthat/test-addin.R | 2 tests/testthat/test-browse.R | 2 tests/testthat/test-create.R | 12 +- tests/testthat/test-description.R | 6 - tests/testthat/test-documentation.R | 4 tests/testthat/test-edit.R | 18 ++-- tests/testthat/test-git-utils.R | 7 + tests/testthat/test-git.R | 2 tests/testthat/test-github-action.R | 4 tests/testthat/test-github-actions.R | 14 +-- tests/testthat/test-helpers.R | 16 +-- tests/testthat/test-latest-dependencies.R | 4 tests/testthat/test-lifecycle.R | 6 - tests/testthat/test-line-ending.R | 6 - tests/testthat/test-package.R | 2 tests/testthat/test-proj.R | 18 ++-- tests/testthat/test-r.R | 12 +- tests/testthat/test-roxygen.R | 2 tests/testthat/test-rstudio.R | 12 +- tests/testthat/test-use-badge.R | 10 +- tests/testthat/test-use-circleci.R | 12 +- tests/testthat/test-use-code-of-conduct.R | 2 tests/testthat/test-use-course.R | 1 tests/testthat/test-use-cran-comments.R | 4 tests/testthat/test-use-data-table.R | 4 tests/testthat/test-use-data.R | 14 +-- tests/testthat/test-use-git.R | 8 - tests/testthat/test-use-jenkins.R | 2 tests/testthat/test-use-license.R | 12 +- tests/testthat/test-use-logo.R | 2 tests/testthat/test-use-make.R | 2 tests/testthat/test-use-pipe.R | 8 - tests/testthat/test-use-pkgdown.R | 4 tests/testthat/test-use-rcpp.R | 14 +-- tests/testthat/test-use-readme.R | 6 - tests/testthat/test-use-revdep.R | 4 tests/testthat/test-use-rmarkdown.R | 4 tests/testthat/test-use-roxygen.R | 2 tests/testthat/test-use-template.R | 2 tests/testthat/test-use-testthat.R | 2 tests/testthat/test-use-tibble.R | 4 tests/testthat/test-use-tidy-style.R | 4 tests/testthat/test-use-tidy.R | 8 - tests/testthat/test-use-tutorial.R | 4 tests/testthat/test-use-version.R | 10 +- tests/testthat/test-use-vignette.R | 6 - 62 files changed, 353 insertions(+), 311 deletions(-)
Title: Magnetic Resonance Binning, Integration and Normalization
Description: Nuclear Magnetic Resonance is widely used in Life Science
research. The package (<http://www.kleinomicslab.com/software>) converts 1D or 2D data into a matrix of values
suitable for further data analysis and performs basic processing steps in a
reproducible way. Negative values, a common issue in such data, are replaced
by positive values. All used parameters are stored in a readable text file
and can be restored from that file to enable exact reproduction of the data
at a later time.
Author: Matthias Klein [aut, cre] (<https://orcid.org/0000-0001-7455-5381>)
Maintainer: Matthias Klein <klein.663@osu.edu>
Diff between mrbin versions 1.3.0 dated 2020-03-19 and 1.4.0 dated 2020-04-29
mrbin-1.3.0/mrbin/inst/extdata/4 |only mrbin-1.3.0/mrbin/man/binMultiNMR.Rd |only mrbin-1.3.0/mrbin/man/binSingleNMR.Rd |only mrbin-1.3.0/mrbin/man/calculateNoise.Rd |only mrbin-1.3.0/mrbin/man/createBinNames.Rd |only mrbin-1.3.0/mrbin/man/createBinNumbers.Rd |only mrbin-1.3.0/mrbin/man/createBinRegions.Rd |only mrbin-1.3.0/mrbin/man/dot-onLoad.Rd |only mrbin-1.3.0/mrbin/man/mrbinrun.Rd |only mrbin-1.3.0/mrbin/man/readNMR.Rd |only mrbin-1.3.0/mrbin/man/referenceScaling.Rd |only mrbin-1.3.0/mrbin/man/removeAreas.Rd |only mrbin-1.3.0/mrbin/man/removeSolvent.Rd |only mrbin-1.3.0/mrbin/man/removeSpectrum.Rd |only mrbin-1.3.0/mrbin/man/selectBrukerFolders.Rd |only mrbin-1.3.0/mrbin/man/selectFolders.Rd |only mrbin-1.3.0/mrbin/man/setFactors.Rd |only mrbin-1.3.0/mrbin/man/sumBins.Rd |only mrbin-1.4.0/mrbin/DESCRIPTION | 8 mrbin-1.4.0/mrbin/MD5 | 102 - mrbin-1.4.0/mrbin/NAMESPACE | 17 mrbin-1.4.0/mrbin/NEWS.md | 9 mrbin-1.4.0/mrbin/R/mrbin.R | 1695 +++++++++++++------- mrbin-1.4.0/mrbin/README.md | 77 mrbin-1.4.0/mrbin/build |only mrbin-1.4.0/mrbin/inst/doc |only mrbin-1.4.0/mrbin/inst/extdata/1/12/pdata/10/2rr |binary mrbin-1.4.0/mrbin/inst/extdata/1/12/pdata/10/proc2 | 10 mrbin-1.4.0/mrbin/inst/extdata/1/12/pdata/10/proc2s | 16 mrbin-1.4.0/mrbin/inst/extdata/1/12/pdata/10/procs | 18 mrbin-1.4.0/mrbin/inst/extdata/2/12/pdata/10/2rr |binary mrbin-1.4.0/mrbin/inst/extdata/2/12/pdata/10/proc | 12 mrbin-1.4.0/mrbin/inst/extdata/2/12/pdata/10/proc2 | 10 mrbin-1.4.0/mrbin/inst/extdata/2/12/pdata/10/proc2s | 34 mrbin-1.4.0/mrbin/inst/extdata/2/12/pdata/10/procs | 26 mrbin-1.4.0/mrbin/inst/extdata/3/12 |only mrbin-1.4.0/mrbin/man/atnv.Rd | 2 mrbin-1.4.0/mrbin/man/contMin.Rd | 5 mrbin-1.4.0/mrbin/man/contPlus.Rd | 5 mrbin-1.4.0/mrbin/man/cropNMR.Rd | 6 mrbin-1.4.0/mrbin/man/down.Rd | 5 mrbin-1.4.0/mrbin/man/intMin.Rd | 4 mrbin-1.4.0/mrbin/man/intPlus.Rd | 4 mrbin-1.4.0/mrbin/man/left.Rd | 3 mrbin-1.4.0/mrbin/man/logTrafo.Rd | 2 mrbin-1.4.0/mrbin/man/mrbin.Rd | 13 mrbin-1.4.0/mrbin/man/plotNMR.Rd | 12 mrbin-1.4.0/mrbin/man/plotResults.Rd | 12 mrbin-1.4.0/mrbin/man/readBruker.Rd | 2 mrbin-1.4.0/mrbin/man/recreatemrbin.Rd | 2 mrbin-1.4.0/mrbin/man/removeNoise.Rd | 2 mrbin-1.4.0/mrbin/man/right.Rd | 3 mrbin-1.4.0/mrbin/man/setCurrentSpectrum.Rd | 7 mrbin-1.4.0/mrbin/man/up.Rd | 5 mrbin-1.4.0/mrbin/man/zoom.Rd | 9 mrbin-1.4.0/mrbin/man/zoomIn.Rd | 4 mrbin-1.4.0/mrbin/man/zoomOut.Rd | 4 mrbin-1.4.0/mrbin/vignettes |only 58 files changed, 1415 insertions(+), 730 deletions(-)
Title: Modelling Pathways and Movement Potential Within a Landscape
Description: Provides functionality to calculate cost surfaces based on slope (e.g. Herzog, 2010; Llobera and Sluckin, 2007 <doi:10.1016/j.jtbi.2007.07.020>; París Roche, 2002; Tobler, 1993), traversing slope (Bell and Lock, 2000), and landscape features (Llobera, 2000) to be used when modelling pathways and movement potential within a landscape (e.g. Llobera, 2015; Verhagen, 2013; White and Barber, 2012 <doi:10.1016/j.jas.2012.04.017>).
Author: Joseph Lewis [aut, cre]
Maintainer: Joseph Lewis <josephlewis1992@gmail.com>
Diff between leastcostpath versions 1.2.1 dated 2020-03-25 and 1.2.3 dated 2020-04-29
DESCRIPTION | 12 MD5 | 42 +- NAMESPACE | 1 NEWS.md | 12 R/create_CCP_lcps.R | 2 R/create_FETE_lcps.R | 2 R/create_banded_lcps.R | 2 R/create_lcp_density.R | 4 R/create_lcp_network.R |only R/create_slope_cs.R | 190 ++++++++++--- README.md | 17 + build/vignette.rds |binary inst/doc/leastcostpath-1.R | 31 +- inst/doc/leastcostpath-1.Rmd | 12 inst/doc/leastcostpath-1.html | 602 ++++++++++++++++++++++++++++-------------- inst/doc/leastcostpath-2.R |only inst/doc/leastcostpath-2.Rmd |only inst/doc/leastcostpath-2.html |only man/create_CCP_lcps.Rd | 12 man/create_FETE_lcps.Rd | 10 man/create_banded_lcps.Rd | 13 man/create_lcp_network.Rd |only man/create_slope_cs.Rd | 103 +++---- vignettes/leastcostpath-1.Rmd | 12 vignettes/leastcostpath-2.Rmd |only 25 files changed, 750 insertions(+), 329 deletions(-)
Title: Particle Swarm Optimisation, with Focus on Environmental Models
Description: State-of-the-art version of the Particle Swarm Optimisation (PSO) algorithm (SPSO-2011 and SPSO-2007 capable). hydroPSO can be used as a replacement of the 'optim' R function for (global) optimization of non-smooth and non-linear functions. However, the main focus of hydroPSO is the calibration of environmental and other real-world models that need to be executed from the system console. hydroPSO is model-independent, allowing the user to easily interface any computer simulation model with the calibration engine (PSO). hydroPSO communicates with the model through the model's own input and output files, without requiring access to the model's source code. Several PSO variants and controlling options are included to fine-tune the performance of the calibration engine to different calibration problems. An advanced sensitivity analysis function together with user-friendly plotting summaries facilitate the interpretation and assessment of the calibration results. hydroPSO is parallel-capable, to alleviate the computational burden of complex models with "long" execution time. Bugs reports/comments/questions are very welcomed (in English, Spanish or Italian). See Zambrano-Bigiarini and Rojas (2013) <doi:10.1016/j.envsoft.2013.01.004> for more details.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
(<https://orcid.org/0000-0002-9536-643X>),
Rodrigo Rojas [ctb]
Maintainer: Mauricio Zambrano-Bigiarini <mzb.devel@gmail.com>
Diff between hydroPSO versions 0.5-0 dated 2020-03-18 and 0.5-1 dated 2020-04-29
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 6 ++++++ R/PSO_v2013.R | 5 +++-- inst/doc/hydroPSO_GR4J-vignette-link.Rmd | 5 +++-- inst/doc/hydroPSO_GR4J-vignette-link.pdf |binary inst/doc/hydroPSO_SWAT2005_MF2005.pdf |binary inst/doc/hydroPSO_TUWmodel-vignette-link.Rmd | 5 +++-- inst/doc/hydroPSO_TUWmodel-vignette-link.pdf |binary man/hydroPSO-package.Rd | 6 +++--- man/hydroPSO.Rd | 12 +++++++----- vignettes/hydroPSO_GR4J-vignette-link.Rmd | 5 +++-- vignettes/hydroPSO_TUWmodel-vignette-link.Rmd | 5 +++-- 13 files changed, 47 insertions(+), 34 deletions(-)
Title: Toolkit implementation of gWidgets for tcltk package
Description: Port of the gWidgets API to the tcltk package. Requires Tk 8.5 or greater.
Author: John Verzani
Maintainer: ORPHANED
Diff between gWidgetstcltk versions 0.0-55 dated 2014-07-20 and 0.0-55.1 dated 2020-04-29
DESCRIPTION | 11 +++++++---- MD5 | 2 +- 2 files changed, 8 insertions(+), 5 deletions(-)
Title: gWidgets API for Building Toolkit-Independent, Interactive GUIs
Description: Provides a toolkit-independent API for building interactive GUIs. At least one of the 'gWidgetsXXX packages', such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project <http://scigraphica.sourceforge.net>.
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Maintainer: ORPHANED
Diff between gWidgets versions 0.0-54.1 dated 2019-01-27 and 0.0-54.2 dated 2020-04-29
DESCRIPTION | 13 +++++++++---- MD5 | 6 +++--- R/ghelp.R | 2 +- inst/src/ghelp.R | 2 +- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Assigns Colours to Values
Description: Maps one of the viridis colour palettes, or a user-specified palette to values.
Viridis colour maps are created by Stéfan van der Walt and Nathaniel Smith,
and were set as the default palette for the 'Python' 'Matplotlib' library <https://matplotlib.org/>.
Other palettes available in this library have been derived from
'RColorBrewer' <https://CRAN.R-project.org/package=RColorBrewer> and
'colorspace' <https://CRAN.R-project.org/package=colorspace> packages.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between colourvalues versions 0.3.4 dated 2020-03-18 and 0.3.5 dated 2020-04-29
DESCRIPTION | 10 MD5 | 49 ++-- NEWS.md | 5 R/RcppExports.R | 4 README.md | 43 ++- inst/include/colourvalues/api/api.hpp | 1 inst/include/colourvalues/api/api_rgb_interleaved.hpp |only inst/include/colourvalues/colours/colours_rgb.hpp | 32 -- inst/include/colourvalues/colours/colours_rgb_interleaved.hpp |only inst/include/colourvalues/colours/generate_colours.hpp | 110 +++++++++- inst/include/colourvalues/list/list.hpp | 12 - inst/include/colourvalues/output/output.hpp | 24 ++ inst/include/colourvalues/summary/summary.hpp | 6 man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary src/ColourValues.cpp | 18 + src/RcppExports.cpp | 22 ++ tests/testthat/test-interleaved.R |only tests/testthat/test-lists.R | 10 27 files changed, 248 insertions(+), 98 deletions(-)
Title: Convert Dates to Arbitrary Week Definitions
Description: Which day a week starts depends heavily on the either the local or
professional context. This package is designed to be a lightweight solution
to easily switching between week-based date definitions.
Author: Zhian N. Kamvar [aut, cre]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between aweek versions 1.0.0 dated 2019-06-11 and 1.0.1 dated 2020-04-29
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------- NEWS.md | 8 +++++ build/vignette.rds |binary inst/doc/introduction.R | 54 ++++++++++++++++++++-------------------- inst/doc/introduction.html | 31 +++++++++++----------- man/as.aweek.Rd | 5 +-- man/date2week.Rd | 10 +++++-- man/get_aweek.Rd | 18 ++++++++++--- tests/testthat/test-date2week.R | 6 ++-- 10 files changed, 91 insertions(+), 67 deletions(-)