Title: Obtain 'jQuery' as an HTML Dependency Object
Description: Obtain any major version of 'jQuery' (<https://code.jquery.com/>) and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown').
Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.
Author: Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Joe Cheng [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/lib/jquery-AUTHORS.txt)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between jquerylib versions 0.1 dated 2020-03-19 and 0.1.1 dated 2020-04-30
jquerylib-0.1.1/jquerylib/DESCRIPTION | 6 +++--- jquerylib-0.1.1/jquerylib/MD5 | 17 +++++++++-------- jquerylib-0.1.1/jquerylib/NEWS.md |only jquerylib-0.1.1/jquerylib/R/jquery.R | 2 +- jquerylib-0.1.1/jquerylib/README.md | 4 ++-- jquerylib-0.1.1/jquerylib/inst/lib/AUTHORS.txt | 1 + jquerylib-0.1.1/jquerylib/inst/lib/jquery-3.5.0.js |only jquerylib-0.1.1/jquerylib/inst/lib/jquery-3.5.0.min.js |only jquerylib-0.1.1/jquerylib/tests/testthat/test-jquery.R | 2 +- jquerylib-0.1.1/jquerylib/tools/download.R | 4 ++-- jquerylib-0.1/jquerylib/inst/lib/jquery-3.4.1.js |only jquerylib-0.1/jquerylib/inst/lib/jquery-3.4.1.min.js |only 12 files changed, 19 insertions(+), 17 deletions(-)
Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS'
into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS'
data describing 1.4 billion individuals drawn from over 750 censuses and surveys is
available free of charge from our website <https://ipums.org>.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Joe Grover [ctb],
Minnesota Population Center [cph]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between ipumsr versions 0.4.2 dated 2019-06-04 and 0.4.3 dated 2020-04-30
ipumsr-0.4.2/ipumsr/R/lbl_pillar.r |only ipumsr-0.4.3/ipumsr/DESCRIPTION | 14 ipumsr-0.4.3/ipumsr/MD5 | 140 +- ipumsr-0.4.3/ipumsr/NAMESPACE | 203 +-- ipumsr-0.4.3/ipumsr/NEWS.md | 10 ipumsr-0.4.3/ipumsr/R/bind_rows.r | 108 - ipumsr-0.4.3/ipumsr/R/callbacks.r | 376 +++--- ipumsr-0.4.3/ipumsr/R/ddi_read.r | 1124 +++++++++--------- ipumsr-0.4.3/ipumsr/R/lbl_helpers.r | 998 ++++++++------- ipumsr-0.4.3/ipumsr/R/micro_read.r | 414 +++--- ipumsr-0.4.3/ipumsr/R/micro_read_chunked.r | 465 +++---- ipumsr-0.4.3/ipumsr/R/micro_read_helpers.r | 268 ++-- ipumsr-0.4.3/ipumsr/R/micro_read_yield.r | 432 +++--- ipumsr-0.4.3/ipumsr/R/utils.r | 933 +++++++------- ipumsr-0.4.3/ipumsr/README.md | 182 +- ipumsr-0.4.3/ipumsr/build/vignette.rds |binary ipumsr-0.4.3/ipumsr/inst/doc/ipums-bigdata.R | 40 ipumsr-0.4.3/ipumsr/inst/doc/ipums-bigdata.Rmd | 8 ipumsr-0.4.3/ipumsr/inst/doc/ipums-bigdata.html | 688 +++++------ ipumsr-0.4.3/ipumsr/inst/doc/ipums-cps.R | 42 ipumsr-0.4.3/ipumsr/inst/doc/ipums-cps.html | 448 +++---- ipumsr-0.4.3/ipumsr/inst/doc/ipums-geography.R | 34 ipumsr-0.4.3/ipumsr/inst/doc/ipums-geography.html | 459 +++---- ipumsr-0.4.3/ipumsr/inst/doc/ipums-nhgis.R | 44 ipumsr-0.4.3/ipumsr/inst/doc/ipums-nhgis.html | 406 +++--- ipumsr-0.4.3/ipumsr/inst/doc/ipums-terra.R | 186 +- ipumsr-0.4.3/ipumsr/inst/doc/ipums-terra.html | 238 +-- ipumsr-0.4.3/ipumsr/inst/doc/ipums.R | 16 ipumsr-0.4.3/ipumsr/inst/doc/ipums.Rmd | 564 ++++----- ipumsr-0.4.3/ipumsr/inst/doc/ipums.html | 463 +++---- ipumsr-0.4.3/ipumsr/inst/doc/value-labels.R | 32 ipumsr-0.4.3/ipumsr/inst/doc/value-labels.html | 589 ++++----- ipumsr-0.4.3/ipumsr/man/dplyr_select_style.Rd | 88 - ipumsr-0.4.3/ipumsr/man/ipums_bind_rows.Rd | 42 ipumsr-0.4.3/ipumsr/man/ipums_callback.Rd | 435 ++++++ ipumsr-0.4.3/ipumsr/man/ipums_collect.Rd | 51 ipumsr-0.4.3/ipumsr/man/ipums_conditions.Rd | 32 ipumsr-0.4.3/ipumsr/man/ipums_example.Rd | 44 ipumsr-0.4.3/ipumsr/man/ipums_file_info.Rd | 54 ipumsr-0.4.3/ipumsr/man/ipums_list_files.Rd | 99 - ipumsr-0.4.3/ipumsr/man/ipums_shape_left_join.Rd | 160 +- ipumsr-0.4.3/ipumsr/man/ipums_var_info.Rd | 126 +- ipumsr-0.4.3/ipumsr/man/ipums_view.Rd | 62 ipumsr-0.4.3/ipumsr/man/ipums_website.Rd | 123 + ipumsr-0.4.3/ipumsr/man/ipumsr-package.Rd | 80 - ipumsr-0.4.3/ipumsr/man/join_failures.Rd | 42 ipumsr-0.4.3/ipumsr/man/lbl.Rd | 74 - ipumsr-0.4.3/ipumsr/man/lbl_add.Rd | 102 - ipumsr-0.4.3/ipumsr/man/lbl_clean.Rd | 70 - ipumsr-0.4.3/ipumsr/man/lbl_collapse.Rd | 110 - ipumsr-0.4.3/ipumsr/man/lbl_define.Rd |only ipumsr-0.4.3/ipumsr/man/lbl_na_if.Rd | 102 - ipumsr-0.4.3/ipumsr/man/lbl_relabel.Rd | 116 - ipumsr-0.4.3/ipumsr/man/make_ddi_from_scratch.Rd | 42 ipumsr-0.4.3/ipumsr/man/read_ipums_codebook.Rd | 69 - ipumsr-0.4.3/ipumsr/man/read_ipums_ddi.Rd | 71 - ipumsr-0.4.3/ipumsr/man/read_ipums_micro.Rd | 239 ++- ipumsr-0.4.3/ipumsr/man/read_ipums_micro_chunked.Rd | 268 ++-- ipumsr-0.4.3/ipumsr/man/read_ipums_micro_yield.Rd | 312 +++- ipumsr-0.4.3/ipumsr/man/read_ipums_sf.Rd | 162 +- ipumsr-0.4.3/ipumsr/man/read_nhgis.Rd | 189 +-- ipumsr-0.4.3/ipumsr/man/read_terra_area.Rd | 185 +- ipumsr-0.4.3/ipumsr/man/read_terra_micro.Rd | 115 - ipumsr-0.4.3/ipumsr/man/read_terra_raster.Rd | 92 - ipumsr-0.4.3/ipumsr/man/reexports.Rd | 60 ipumsr-0.4.3/ipumsr/man/set_ipums_var_attributes.Rd | 109 - ipumsr-0.4.3/ipumsr/man/zap_ipums_attributes.Rd | 76 - ipumsr-0.4.3/ipumsr/tests/testthat/test_lbls.r | 492 ++++--- ipumsr-0.4.3/ipumsr/tests/testthat/test_lower_names.R | 409 +++++- ipumsr-0.4.3/ipumsr/tests/testthat/test_micro_yield.r | 205 +-- ipumsr-0.4.3/ipumsr/vignettes/ipums-bigdata.Rmd | 8 ipumsr-0.4.3/ipumsr/vignettes/ipums.Rmd | 564 ++++----- 72 files changed, 8351 insertions(+), 7252 deletions(-)
Title: Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data.
Supports micrometers, cM and Mb.
Seven styles of marks are available: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.14.7 dated 2020-03-28 and 1.14.11 dated 2020-04-30
idiogramFISH-1.14.11/idiogramFISH/DESCRIPTION | 10 idiogramFISH-1.14.11/idiogramFISH/MD5 | 118 - idiogramFISH-1.14.11/idiogramFISH/NAMESPACE | 1 idiogramFISH-1.14.11/idiogramFISH/NEWS.md | 77 idiogramFISH-1.14.11/idiogramFISH/R/addAttributesDfChrSize.R |only idiogramFISH-1.14.11/idiogramFISH/R/arrowPlotMark.R | 132 - idiogramFISH-1.14.11/idiogramFISH/R/cMPlotMark.R | 81 idiogramFISH-1.14.11/idiogramFISH/R/chrbasicdatamono.R | 4 idiogramFISH-1.14.11/idiogramFISH/R/dfMarkStyle.R | 3 idiogramFISH-1.14.11/idiogramFISH/R/dfToListColumn.R |only idiogramFISH-1.14.11/idiogramFISH/R/genBankReadIF.R | 6 idiogramFISH-1.14.11/idiogramFISH/R/mapXY.R | 25 idiogramFISH-1.14.11/idiogramFISH/R/markposDFs.R | 4 idiogramFISH-1.14.11/idiogramFISH/R/mimicCenPlotMark.R | 24 idiogramFISH-1.14.11/idiogramFISH/R/namesToColumns.R |only idiogramFISH-1.14.11/idiogramFISH/R/newOrderColumn.R | 16 idiogramFISH-1.14.11/idiogramFISH/R/orientation.R | 109 - idiogramFISH-1.14.11/idiogramFISH/R/plotIdiograms.R | 980 +++++----- idiogramFISH-1.14.11/idiogramFISH/R/textLabel.R | 27 idiogramFISH-1.14.11/idiogramFISH/README.md | 976 --------- idiogramFISH-1.14.11/idiogramFISH/build/vignette.rds |binary idiogramFISH-1.14.11/idiogramFISH/inst/doc/AplotIdiogramsVig.R | 91 idiogramFISH-1.14.11/idiogramFISH/inst/doc/AplotIdiogramsVig.Rmd | 99 - idiogramFISH-1.14.11/idiogramFISH/inst/doc/AplotIdiogramsVig.html | 136 - idiogramFISH-1.14.11/idiogramFISH/inst/doc/BcircularVig.R | 274 +- idiogramFISH-1.14.11/idiogramFISH/inst/doc/BcircularVig.Rmd | 274 +- idiogramFISH-1.14.11/idiogramFISH/inst/doc/BcircularVig.html | 812 ++++---- idiogramFISH-1.14.11/idiogramFISH/inst/doc/DphylogenyVig.html | 524 ++--- idiogramFISH-1.14.11/idiogramFISH/inst/doc/EhumanVig.html | 2 idiogramFISH-1.14.11/idiogramFISH/inst/doc/index.R | 47 idiogramFISH-1.14.11/idiogramFISH/inst/doc/index.Rmd | 51 idiogramFISH-1.14.11/idiogramFISH/inst/doc/index.html | 14 idiogramFISH-1.14.11/idiogramFISH/man/addAttributesDfChrSize.Rd |only idiogramFISH-1.14.11/idiogramFISH/man/arrowPlotMark.Rd | 27 idiogramFISH-1.14.11/idiogramFISH/man/cMPlotMark.Rd | 4 idiogramFISH-1.14.11/idiogramFISH/man/chrbasicdatamono.Rd | 4 idiogramFISH-1.14.11/idiogramFISH/man/dfMarkStyle.Rd | 3 idiogramFISH-1.14.11/idiogramFISH/man/dfToListColumn.Rd |only idiogramFISH-1.14.11/idiogramFISH/man/figures/NEWS.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/README-example-1.png |binary idiogramFISH-1.14.11/idiogramFISH/man/figures/README-unnamed-chunk-16-1.png |only idiogramFISH-1.14.11/idiogramFISH/man/figures/README-unnamed-chunk-17-1.png |binary idiogramFISH-1.14.11/idiogramFISH/man/figures/crandownload.svg | 4 idiogramFISH-1.14.11/idiogramFISH/man/figures/cranmanualbookdown.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/cranversion.svg | 4 idiogramFISH-1.14.11/idiogramFISH/man/figures/develmanualpkgdown.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/develmanualvignette.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/donateweek.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/gitbadge.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/manual.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/nostoc.jpg |binary idiogramFISH-1.14.11/idiogramFISH/man/figures/nostocSmall.jpg |binary idiogramFISH-1.14.11/idiogramFISH/man/figures/pkgdownver.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/readme.svg | 2 idiogramFISH-1.14.11/idiogramFISH/man/figures/realdownloads.svg |only idiogramFISH-1.14.11/idiogramFISH/man/idiogramFISH-package.Rd | 2 idiogramFISH-1.14.11/idiogramFISH/man/markposDFs.Rd | 4 idiogramFISH-1.14.11/idiogramFISH/man/mimicCenPlotMark.Rd | 6 idiogramFISH-1.14.11/idiogramFISH/man/namesToColumns.Rd |only idiogramFISH-1.14.11/idiogramFISH/man/plotIdiograms.Rd | 155 - idiogramFISH-1.14.11/idiogramFISH/vignettes/AplotIdiogramsVig.Rmd | 99 - idiogramFISH-1.14.11/idiogramFISH/vignettes/BcircularVig.Rmd | 274 +- idiogramFISH-1.14.11/idiogramFISH/vignettes/index.Rmd | 51 idiogramFISH-1.14.7/idiogramFISH/R/dfToListOTU.R |only idiogramFISH-1.14.7/idiogramFISH/man/dfToListOTU.Rd |only 65 files changed, 2517 insertions(+), 3055 deletions(-)
Title: Visualization and Estimation of Effect Sizes
Description: A variety of methods are provided to estimate and visualize
distributional differences in terms of effect sizes. Particular emphasis
is upon evaluating differences between two or more distributions across
the entire scale, rather than at a single point (e.g., differences in
means). For example, Probability-Probability (PP) plots display the
difference between two or more distributions, matched by their empirical
CDFs (see Ho and Reardon, 2012; <doi:10.3102/1076998611411918>), allowing
for examinations of where on the scale distributional differences are
largest or smallest. The area under the PP curve (AUC) is an effect-size
metric, corresponding to the probability that a randomly selected
observation from the x-axis distribution will have a higher value
than a randomly selected observation from the y-axis distribution.
Binned effect size plots are also available, in which the distributions
are split into bins (set by the user) and separate effect sizes (Cohen's
d) are produced for each bin - again providing a means to evaluate the
consistency (or lack thereof) of the difference between two or more
distributions at different points on the scale. Evaluation of empirical
CDFs is also provided, with built-in arguments for providing annotations
to help evaluate distributional differences at specific points (e.g.,
semi-transparent shading). All function take a consistent argument
structure. Calculation of specific effect sizes is also possible. The
following effect sizes are estimable: (a) Cohen's d, (b) Hedges' g,
(c) percentage above a cut, (d) transformed (normalized) percentage above
a cut, (e) area under the PP curve, and (f) the V statistic (see Ho,
2009; <doi:10.3102/1076998609332755>), which essentially transforms the
area under the curve to standard deviation units. By default, effect sizes
are calculated for all possible pairwise comparisons, but a reference
group (distribution) can be specified.
Author: Daniel Anderson [aut, cre]
Maintainer: Daniel Anderson <daniela@uoregon.edu>
Diff between esvis versions 0.3.0 dated 2020-02-28 and 0.3.1 dated 2020-04-30
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/ecdf_plot.R | 2 +- R/es_calcs.R | 24 ++++++++++++++---------- R/pp_plot.R | 2 +- R/utils.R | 15 ++++++--------- README.md | 6 +----- 8 files changed, 36 insertions(+), 36 deletions(-)
Title: An Implementation of Parametric and Nonparametric Event Study
Description: An implementation of a most commonly used event study methodology,
including both parametric and nonparametric tests. It contains variety
aspects of the rate of return estimation (the core calculation is done in
C++), as well as three classical for event study market models: mean
adjusted returns, market adjusted returns and single-index market models.
There are 6 parametric and 6 nonparametric tests provided, which examine
cross-sectional daily abnormal return (see the documentation of the
functions for more information). Parametric tests include tests proposed by
Brown and Warner (1980) <DOI:10.1016/0304-405X(80)90002-1>, Brown and Warner
(1985) <DOI:10.1016/0304-405X(85)90042-X>, Boehmer et al. (1991)
<DOI:10.1016/0304-405X(91)90032-F>, Patell (1976) <DOI:10.2307/2490543>, and
Lamb (1995) <DOI:10.2307/253695>. Nonparametric tests covered in estudy2 are
tests described in Corrado and Zivney (1992) <DOI:10.2307/2331331>,
McConnell and Muscarella (1985) <DOI:10.1016/0304-405X(85)90006-6>,
Boehmer et al. (1991) <DOI:10.1016/0304-405X(91)90032-F>, Cowan (1992)
<DOI:10.1007/BF00939016>, Corrado (1989) <DOI:10.1016/0304-405X(89)90064-0>,
Campbell and Wasley (1993) <DOI:10.1016/0304-405X(93)90025-7>, Savickas (2003)
<DOI:10.1111/1475-6803.00052>, Kolari and Pynnonen (2010)
<DOI:10.1093/rfs/hhq072>. Furthermore, tests for the cumulative
abnormal returns proposed by Brown and Warner (1985)
<DOI:10.1016/0304-405X(85)90042-X> and Lamb (1995) <DOI:10.2307/253695>
are included.
Author: Iegor Rudnytskyi [aut, cre]
Maintainer: Iegor Rudnytskyi <iegor.rudnytskyi@gmail.com>
Diff between estudy2 versions 0.9.1 dated 2019-12-16 and 0.9.2 dated 2020-04-30
DESCRIPTION | 10 +- MD5 | 96 ++++++++++---------- NEWS.md | 4 R/apply_market_model.R | 8 - R/car_nonparametric_tests.R | 4 R/car_parametric_tests.R | 6 - R/data.R | 8 - R/get_prices_from_tickers.R | 2 R/get_rates_from_prices.R | 2 R/nonparametric_tests.R | 14 +- R/parametric_tests.R | 14 +- README.md | 4 build/vignette.rds |binary data/prices_indx.rda |binary data/rates.rda |binary data/rates_indx.rda |binary data/securities_returns.rda |binary inst/doc/estudy2-intro.R | 18 +-- inst/doc/estudy2-intro.Rmd | 4 inst/doc/estudy2-intro.html | 196 ++++++++++++++++++++--------------------- man/apply_market_model.Rd | 14 ++ man/boehmer.Rd | 2 man/brown_warner_1980.Rd | 2 man/brown_warner_1985.Rd | 2 man/car_brown_warner_1985.Rd | 5 - man/car_lamb.Rd | 2 man/car_nonparametric_tests.Rd | 12 +- man/car_parametric_tests.Rd | 12 +- man/car_rank_test.Rd | 2 man/corrado_sign_test.Rd | 2 man/generalized_sign_test.Rd | 2 man/get_prices_from_tickers.Rd | 11 +- man/get_rates_from_prices.Rd | 10 +- man/lamb.Rd | 2 man/modified_rank_test.Rd | 2 man/nonparametric_tests.Rd | 5 - man/parametric_tests.Rd | 5 - man/patell.Rd | 2 man/prices.Rd | 6 - man/prices_indx.Rd | 8 + man/rank_test.Rd | 2 man/rates.Rd | 6 - man/rates_indx.Rd | 8 + man/returns.Rd | 14 ++ man/securities_returns.Rd | 6 - man/sign_test.Rd | 2 man/t_test.Rd | 2 man/wilcoxon_test.Rd | 2 vignettes/estudy2-intro.Rmd | 4 49 files changed, 294 insertions(+), 250 deletions(-)
Title: Bayes Screening and Model Discrimination
Description: Bayes screening and model discrimination follow-up designs.
Author: Ernesto Barrios based on Daniel Meyer's code.
Maintainer: Ernesto Barrios <ebarrios@itam.mx>
Diff between BsMD versions 2013.0718-1 dated 2018-02-01 and 2020.4.30 dated 2020-04-30
DESCRIPTION | 15 - MD5 | 11 build |only inst/doc/BsMD.R | 604 ++++++++++++++++++++++++++--------------------------- inst/doc/BsMD.Rnw | 2 inst/doc/BsMD.pdf |binary vignettes/BsMD.Rnw | 2 7 files changed, 316 insertions(+), 318 deletions(-)
Title: Summarize Data for Publication
Description: A set of tools for preparing and summarizing data for publication purposes. Includes functions for tabulating models, means to produce human-readable summary statistics from raw data, macros for calculating duration of time, and simplistic hypothesis testing tools.
Author: Eric Finnesgard [aut, cre]
Maintainer: Eric Finnesgard <efinite@outlook.com>
Diff between utile.tools versions 0.2.4 dated 2020-03-14 and 0.2.5 dated 2020-04-30
utile.tools-0.2.4/utile.tools/man/tabulate_model.Rd |only utile.tools-0.2.4/utile.tools/man/tabulate_model.coxph.Rd |only utile.tools-0.2.4/utile.tools/man/tabulate_model.glm.Rd |only utile.tools-0.2.4/utile.tools/man/tabulate_model.lm.Rd |only utile.tools-0.2.5/utile.tools/DESCRIPTION | 14 utile.tools-0.2.5/utile.tools/MD5 | 43 - utile.tools-0.2.5/utile.tools/NAMESPACE | 7 utile.tools-0.2.5/utile.tools/NEWS.md | 94 ++- utile.tools-0.2.5/utile.tools/R/calc.R | 183 +++---- utile.tools-0.2.5/utile.tools/R/chunk.R | 74 +-- utile.tools-0.2.5/utile.tools/R/paste.R | 296 +++++++----- utile.tools-0.2.5/utile.tools/R/tabulate.R | 335 +------------- utile.tools-0.2.5/utile.tools/R/test.R | 163 +++--- utile.tools-0.2.5/utile.tools/R/utils.R | 69 -- utile.tools-0.2.5/utile.tools/README.md | 54 +- utile.tools-0.2.5/utile.tools/man/calc_chunks.Rd | 62 +- utile.tools-0.2.5/utile.tools/man/calc_duration.Rd | 13 utile.tools-0.2.5/utile.tools/man/chunk_data_.Rd | 7 utile.tools-0.2.5/utile.tools/man/paste.Rd |only utile.tools-0.2.5/utile.tools/man/paste_efs.Rd | 15 utile.tools-0.2.5/utile.tools/man/paste_freq.Rd | 28 - utile.tools-0.2.5/utile.tools/man/paste_mean.Rd | 11 utile.tools-0.2.5/utile.tools/man/paste_median.Rd | 12 utile.tools-0.2.5/utile.tools/man/tabulate_at_risk.Rd | 11 utile.tools-0.2.5/utile.tools/man/test_hypothesis.Rd | 8 25 files changed, 625 insertions(+), 874 deletions(-)
Title: Time-Varying Coefficient Linear Regression for Single and
Multi-Equations
Description: Fitting time-varying coefficient models both for single and multi-equation regressions, using kernel smoothing techniques.
Author: Isabel Casas [aut, cre],
Ruben Fernandez-Casal [aut]
Maintainer: Isabel Casas <casasis@gmail.com>
Diff between tvReg versions 0.5.1 dated 2020-04-16 and 0.5.2 dated 2020-04-30
DESCRIPTION | 8 MD5 | 30 +-- NEWS.md | 8 R/bw.R | 35 +--- R/confint_tvReg.R | 2 R/kernels.R | 9 - R/tvAR.R | 9 - R/tvBOOT.R | 11 - R/tvCov.R | 8 R/tvFE.R | 5 R/tvPLM.R | 7 inst/doc/tvReg.R | 6 inst/doc/tvReg.Rmd | 8 inst/doc/tvReg.html | 420 ++++++++++++++++++++++++++-------------------------- man/tvCov.Rd | 11 + vignettes/tvReg.Rmd | 8 16 files changed, 305 insertions(+), 280 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb],
Maki Sakurai [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.94 dated 2020-01-15 and 0.90.95 dated 2020-04-30
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 4 ++-- R/Reference.R | 2 +- R/Run.StatCharrms.R | 28 +++++++++++++++++++++------- R/ZZZ.r | 4 ++-- R/addMultiSpec.std.R | 2 +- R/getLineContrast.R | 2 +- build/vignette.rds |binary inst/doc/StatCharrms.pdf |binary 10 files changed, 43 insertions(+), 29 deletions(-)
Title: Extract, Analyze and Visualize Signatures for Genomic Variations
Description: Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut, ctb] (<https://orcid.org/0000-0002-7736-0077>),
Tao Wu [aut, ctb],
Ziyu Tao [aut, ctb],
Geoffrey Macintyre [ctb],
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 1.0.0 dated 2020-03-31 and 1.0.3 dated 2020-04-30
DESCRIPTION | 49 - LICENSE | 4 MD5 | 265 +++--- NAMESPACE | 205 ++--- NEWS.md | 43 - R/add_h_arrow.R | 102 +- R/add_labels.R | 168 ++-- R/assert.R | 14 R/bayesianNMF.R | 558 +++++++------- R/class.R | 262 +++--- R/data.R | 148 ++- R/enrich_component_strand_bias.R |only R/find_enriched_signature.R | 106 +- R/generate_matrices.R |only R/get.R | 1215 +++++++++++++++---------------- R/get_adj_p.R | 204 ++--- R/get_bayesian_result.R | 198 ++--- R/get_cn_ploidy.R | 100 +- R/get_genome_annotation.R | 222 ++--- R/get_group_comparison.R | 260 +++--- R/get_groups.R | 364 ++++----- R/get_sig_exposure.R | 168 ++-- R/get_sig_feature_association.R | 526 ++++++------- R/get_sig_optimal_exposure.R | 104 +- R/get_sig_similarity.R | 488 ++++++------ R/get_tidy_association.R | 134 +-- R/get_tidy_parameter.R | 178 ++-- R/handle_hyper_mutation.R | 62 - R/hello.R | 37 R/helper_calc_sum_of_events.R | 92 +- R/helper_create_colormap.R | 42 - R/helper_derive_cn_features.R | 710 +++++++++--------- R/helper_fit_cn_components.R | 480 ++++++------ R/helper_join_segments.R | 108 +- R/helper_normalize_by_feature.R | 138 +-- R/helper_scale_nmf_matrix.R | 56 - R/helper_sort_signature.R | 104 +- R/read_copynumber.R | 770 ++++++++++--------- R/read_maf.R | 86 +- R/scoring.R | 458 +++++------ R/show_catalogue.R | 150 +-- R/show_cn_circos.R | 277 +++---- R/show_cn_components.R | 472 ++++++------ R/show_cn_distribution.R | 326 ++++---- R/show_cn_features.R | 294 +++---- R/show_cn_group_profile.R | 180 ++-- R/show_cn_profile.R | 402 +++++----- R/show_cosmic_signatures.R | 174 ++-- R/show_group_comparison.R | 548 ++++++------- R/show_group_mapping.R | 190 ++-- R/show_sig_consensusmap.R | 56 - R/show_sig_exposure.R | 459 +++++------ R/show_sig_feature_corrplot.R | 446 +++++------ R/show_sig_number_survey.R | 312 +++---- R/show_sig_number_survey2.R | 253 +++--- R/show_sig_profile.R | 890 +++++++++++----------- R/sig_auto_extract.R | 398 +++++----- R/sig_convert.R | 310 +++---- R/sig_estimate.R | 396 +++++----- R/sig_extract.R | 316 ++++---- R/sig_fit.R | 609 ++++++++++----- R/sig_fit_bootstrap.R |only R/sig_tally.R | 755 ++++++++++++------- R/sigminer.R | 43 - R/signature_obj_operation.R | 276 +++---- R/utils-pipe.R | 22 R/utils-tidy-eval.R | 94 +- R/utils.R | 242 +++--- R/zzz.R | 30 README.md | 360 ++++----- build/vignette.rds |binary data/transcript.hg19.rda |only data/transcript.hg38.rda |only inst/CITATION |only inst/doc/sigminer.Rmd | 12 inst/doc/sigminer.html | 350 ++++---- inst/extdata/human_hg19_gene_info.rds |only inst/extdata/human_hg38_gene_info.rds |only inst/extdata/metastatic_tumor.segtab.txt | 404 +++++----- man/CN.features.Rd | 36 man/CopyNumber-class.Rd | 56 - man/MAF-class.Rd | 66 - man/add_h_arrow.Rd | 106 +- man/add_labels.Rd | 158 ++-- man/centromeres.hg19.Rd | 36 man/centromeres.hg38.Rd | 36 man/chromsize.hg19.Rd | 36 man/chromsize.hg38.Rd | 36 man/cytobands.hg19.Rd | 36 man/cytobands.hg38.Rd | 36 man/enrich_component_strand_bias.Rd |only man/figures/README-unnamed-chunk-1-1.png |only man/figures/README-unnamed-chunk-2-1.png |only man/get_adj_p.Rd | 186 ++-- man/get_bayesian_result.Rd | 64 - man/get_cn_ploidy.Rd | 54 - man/get_genome_annotation.Rd | 92 +- man/get_group_comparison.Rd | 152 +-- man/get_groups.Rd | 146 +-- man/get_sig_exposure.Rd | 88 +- man/get_sig_feature_association.Rd | 114 +- man/get_sig_similarity.Rd | 166 ++-- man/get_tidy_association.Rd | 50 - man/get_tidy_parameter.Rd | 62 - man/handle_hyper_mutation.Rd | 44 - man/hello.Rd | 28 man/pipe.Rd | 24 man/read_copynumber.Rd | 181 ++-- man/read_maf.Rd | 134 +-- man/report_bootstrap_p_value.Rd |only man/scoring.Rd | 156 +-- man/show_catalogue.Rd | 120 +-- man/show_cn_circos.Rd | 130 +-- man/show_cn_components.Rd | 150 +-- man/show_cn_distribution.Rd | 104 +- man/show_cn_features.Rd | 124 +-- man/show_cn_profile.Rd | 118 +-- man/show_cosmic_sig_profile.Rd | 80 +- man/show_group_comparison.Rd | 232 ++--- man/show_group_mapping.Rd | 118 +-- man/show_sig_consensusmap.Rd | 86 +- man/show_sig_exposure.Rd | 174 ++-- man/show_sig_feature_corrplot.Rd | 150 +-- man/show_sig_number_survey.Rd | 170 ++-- man/show_sig_number_survey2.Rd | 152 +-- man/show_sig_profile.Rd | 370 ++++----- man/sig_auto_extract.Rd | 216 ++--- man/sig_convert.Rd | 96 +- man/sig_estimate.Rd | 194 ++-- man/sig_extract.Rd | 142 +-- man/sig_fit.Rd | 201 +++-- man/sig_fit_bootstrap.Rd |only man/sig_operation.Rd | 126 +-- man/sig_tally.Rd | 404 +++++----- man/sigminer.Rd | 26 man/subset.CopyNumber.Rd | 52 - man/tidyeval.Rd | 102 +- man/transcript.hg19.Rd |only man/transcript.hg38.Rd |only man/use_color_style.Rd | 42 - vignettes/sigminer.Rmd | 12 141 files changed, 13113 insertions(+), 12431 deletions(-)
Title: Data on Base Packages for Current and Previous Versions of R
Description: Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 3.6.3.0 dated 2020-03-01 and 4.0.0.0 dated 2020-04-30
DESCRIPTION | 6 - MD5 | 16 ++-- NEWS.md | 5 + README.md | 101 ++++++++++++++++++++++++++----- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary 9 files changed, 103 insertions(+), 25 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico Caeiro [ctb],
Stephane Champely [ctb],
Daniel Chessel [ctb],
Leanne Chhay [ctb],
Clint Cummins [ctb],
Michael Dewey [ctb],
Harold C. Doran [ctb],
Stephane Dray [ctb],
Charles Dupont [ctb],
Dirk Eddelbuettel [ctb],
Jeff Enos [ctb],
Claus Ekstrom [ctb],
Martin Elff [ctb],
Kamil Erguler [ctb],
Richard W. Farebrother [ctb],
John Fox [ctb],
Romain Francois [ctb],
Michael Friendly [ctb],
Tal Galili [ctb],
Matthias Gamer [ctb],
Joseph L. Gastwirth [ctb],
Yulia R. Gel [ctb],
Vilmantas Gegzna [ctb],
Juergen Gross [ctb],
Gabor Grothendieck [ctb],
Frank E. Harrell Jr [ctb],
Richard Heiberger [ctb],
Michael Hoehle [ctb],
Christian W. Hoffmann [ctb],
Soeren Hojsgaard [ctb],
Torsten Hothorn [ctb],
Markus Huerzeler [ctb],
Wallace W. Hui [ctb],
Pete Hurd [ctb],
Rob J. Hyndman [ctb],
Pablo J. Villacorta Iglesias [ctb],
Christopher Jackson [ctb],
Matthias Kohl [ctb],
Mikko Korpela [ctb],
Max Kuhn [ctb],
Detlew Labes [ctb],
Duncan Temple Lang [ctb],
Friederich Leisch [ctb],
Jim Lemon [ctb],
Dong Li [ctb],
Martin Maechler [ctb],
Arni Magnusson [ctb],
Daniel Malter [ctb],
George Marsaglia [ctb],
John Marsaglia [ctb],
Alina Matei [ctb],
David Meyer [ctb],
Weiwen Miao [ctb],
Giovanni Millo [ctb],
Yongyi Min [ctb],
David Mitchell [ctb],
Franziska Mueller [ctb],
Markus Naepflin [ctb],
Daniel Navarro [ctb],
Henric Nilsson [ctb],
Klaus Nordhausen [ctb],
Derek Ogle [ctb],
Hong Ooi [ctb],
Nick Parsons [ctb],
Sandrine Pavoine [ctb],
Tony Plate [ctb],
Roland Rapold [ctb],
William Revelle [ctb],
Tyler Rinker [ctb],
Brian D. Ripley [ctb],
Caroline Rodriguez [ctb],
Nathan Russell [ctb],
Nick Sabbe [ctb],
Venkatraman E. Seshan [ctb],
Greg Snow [ctb],
Michael Smithson [ctb],
Karline Soetaert [ctb],
Werner A. Stahel [ctb],
Alec Stephenson [ctb],
Mark Stevenson [ctb],
Ralf Stubner [ctb],
Matthias Templ [ctb],
Terry Therneau [ctb],
Yves Tille [ctb],
Luis Torgo [ctb],
Adrian Trapletti [ctb],
Joshua Ulrich [ctb],
Kevin Ushey [ctb],
Jeremy VanDerWal [ctb],
Bill Venables [ctb],
John Verzani [ctb],
Gregory R. Warnes [ctb],
Stefan Wellek [ctb],
Hadley Wickham [ctb],
Rand R. Wilcox [ctb],
Peter Wolf [ctb],
Daniel Wollschlaeger [ctb],
Joseph Wood [ctb],
Ying Wu [ctb],
Thomas Yee [ctb],
Achim Zeileis [ctb]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.34 dated 2020-03-12 and 0.99.35 dated 2020-04-30
DescTools-0.99.34/DescTools/inst/doc/Combinatorics.Rnw |only DescTools-0.99.34/DescTools/inst/doc/DescToolsCompanion.Rnw |only DescTools-0.99.34/DescTools/inst/doc/TablesInR.Rnw |only DescTools-0.99.34/DescTools/vignettes/Combinatorics.Rnw |only DescTools-0.99.34/DescTools/vignettes/Combinatorics_.pdf |only DescTools-0.99.34/DescTools/vignettes/DescToolsCompanion.Rnw |only DescTools-0.99.34/DescTools/vignettes/DescToolsCompanion_.pdf |only DescTools-0.99.34/DescTools/vignettes/TablesInR.Rnw |only DescTools-0.99.34/DescTools/vignettes/TablesInR_.pdf |only DescTools-0.99.35/DescTools/DESCRIPTION | 15 DescTools-0.99.35/DescTools/MD5 | 100 -- DescTools-0.99.35/DescTools/NAMESPACE | 7 DescTools-0.99.35/DescTools/NEWS | 39 DescTools-0.99.35/DescTools/R/Desc.R | 392 ++++++- DescTools-0.99.35/DescTools/R/DescTools.r | 492 ++++++---- DescTools-0.99.35/DescTools/R/Dialogs.r | 11 DescTools-0.99.35/DescTools/R/LinMod.R | 61 + DescTools-0.99.35/DescTools/R/StatsAndCIs.r | 39 DescTools-0.99.35/DescTools/R/Tests.r | 79 + DescTools-0.99.35/DescTools/R/Utils.R | 16 DescTools-0.99.35/DescTools/R/zzz.r | 2 DescTools-0.99.35/DescTools/README.md | 131 ++ DescTools-0.99.35/DescTools/build/vignette.rds |binary DescTools-0.99.35/DescTools/demo/describe.r | 10 DescTools-0.99.35/DescTools/demo/plots.R | 7 DescTools-0.99.35/DescTools/inst/doc/Combinatorics.pdf |binary DescTools-0.99.35/DescTools/inst/doc/Combinatorics.pdf.asis |only DescTools-0.99.35/DescTools/inst/doc/DescToolsCompanion.pdf |binary DescTools-0.99.35/DescTools/inst/doc/DescToolsCompanion.pdf.asis |only DescTools-0.99.35/DescTools/inst/doc/TablesInR.pdf |binary DescTools-0.99.35/DescTools/inst/doc/TablesInR.pdf.asis |only DescTools-0.99.35/DescTools/man/AUC.Rd | 2 DescTools-0.99.35/DescTools/man/BubbleLegend.Rd | 4 DescTools-0.99.35/DescTools/man/Coalesce.Rd | 5 DescTools-0.99.35/DescTools/man/ColorLegend.Rd | 4 DescTools-0.99.35/DescTools/man/Cstat.Rd | 10 DescTools-0.99.35/DescTools/man/DateFunctions.Rd | 32 DescTools-0.99.35/DescTools/man/Desc.Rd | 22 DescTools-0.99.35/DescTools/man/DescTools-package.Rd | 3 DescTools-0.99.35/DescTools/man/Freq.Rd | 6 DescTools-0.99.35/DescTools/man/GiniSimpson.Rd | 14 DescTools-0.99.35/DescTools/man/Mode.Rd | 2 DescTools-0.99.35/DescTools/man/PlotACF.Rd | 5 DescTools-0.99.35/DescTools/man/PlotDot.Rd | 7 DescTools-0.99.35/DescTools/man/PlotECDF.Rd | 7 DescTools-0.99.35/DescTools/man/PlotFdist.Rd | 4 DescTools-0.99.35/DescTools/man/PlotMonth.Rd | 17 DescTools-0.99.35/DescTools/man/StrTrim.Rd | 8 DescTools-0.99.35/DescTools/man/StripAttr.Rd |only DescTools-0.99.35/DescTools/man/TMod.Rd | 10 DescTools-0.99.35/DescTools/man/TOne.Rd | 69 - DescTools-0.99.35/DescTools/man/ToWrdPlot.Rd | 5 DescTools-0.99.35/DescTools/man/VarTest.Rd | 2 DescTools-0.99.35/DescTools/man/Winsorize.Rd | 2 DescTools-0.99.35/DescTools/man/XLGetRange.Rd | 8 DescTools-0.99.35/DescTools/src/aux_fct.cpp | 8 DescTools-0.99.35/DescTools/vignettes/Combinatorics.pdf.asis |only DescTools-0.99.35/DescTools/vignettes/DescToolsCompanion.pdf.asis |only DescTools-0.99.35/DescTools/vignettes/TablesInR.pdf.asis |only 59 files changed, 1217 insertions(+), 440 deletions(-)
Title: Tools for Working with Data During Statistical Analysis
Description: Contains tools for working with data during statistical analysis, promoting flexible, intuitive, and reproducible workflows. There are functions designated for specific statistical tasks such building a custom univariate descriptive table, computing pairwise association statistics, etc. These are built on a collection of data manipulation tools designed for general use that are motivated by the functional programming concept.
Author: Alex Zajichek [aut, cre]
Maintainer: Alex Zajichek <alexzajichek@gmail.com>
Diff between cheese versions 0.0.3 dated 2020-02-12 and 0.1.0 dated 2020-04-30
cheese-0.0.3/cheese/man/type_match.Rd |only cheese-0.1.0/cheese/DESCRIPTION | 23 cheese-0.1.0/cheese/LICENSE | 2 cheese-0.1.0/cheese/MD5 | 49 cheese-0.1.0/cheese/NAMESPACE | 13 cheese-0.1.0/cheese/R/FUNCTIONS.R | 4010 +++++++++++---------- cheese-0.1.0/cheese/build/vignette.rds |binary cheese-0.1.0/cheese/inst/doc/cheese.R | 305 + cheese-0.1.0/cheese/inst/doc/cheese.Rmd | 446 ++ cheese-0.1.0/cheese/inst/doc/cheese.html | 1448 +++++++ cheese-0.1.0/cheese/inst/doc/describe.R |only cheese-0.1.0/cheese/inst/doc/describe.Rmd |only cheese-0.1.0/cheese/inst/doc/describe.html |only cheese-0.1.0/cheese/man/absorb.Rd | 37 cheese-0.1.0/cheese/man/depths.Rd |only cheese-0.1.0/cheese/man/descriptives.Rd | 76 cheese-0.1.0/cheese/man/dish.Rd | 56 cheese-0.1.0/cheese/man/divide.Rd | 78 cheese-0.1.0/cheese/man/fasten.Rd |only cheese-0.1.0/cheese/man/figures |only cheese-0.1.0/cheese/man/grable.Rd |only cheese-0.1.0/cheese/man/muddle.Rd |only cheese-0.1.0/cheese/man/pipe.Rd | 2 cheese-0.1.0/cheese/man/some_type.Rd |only cheese-0.1.0/cheese/man/stratiply.Rd | 81 cheese-0.1.0/cheese/man/stretch.Rd | 105 cheese-0.1.0/cheese/man/typly.Rd | 39 cheese-0.1.0/cheese/man/univariate_associations.Rd | 121 cheese-0.1.0/cheese/man/univariate_table.Rd | 89 cheese-0.1.0/cheese/vignettes/cheese.Rmd | 446 ++ cheese-0.1.0/cheese/vignettes/describe.Rmd |only 31 files changed, 5182 insertions(+), 2244 deletions(-)
Title: A Framework for Reproducible and Collaborative Data Science
Description: Provides a workflow for your analysis projects by combining
literate programming ('knitr' and 'rmarkdown') and version control
('Git', via 'git2r') to generate a website containing time-stamped,
versioned, and documented results.
Author: John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Peter Carbonetto [aut] (<https://orcid.org/0000-0003-1144-6780>),
Matthew Stephens [aut] (<https://orcid.org/0000-0001-5397-9257>),
Luke Zappia [ctb] (Instructions for hosting with GitLab),
Pierre Formont [ctb] (Support for hosting with Shiny Server),
Tim Trice [ctb] (Instructions for sharing common code),
Jiaxiang Li [ctb] (Function wflow_toc() to create table of contents),
Michael J. Kane [ctb] (<https://orcid.org/0000-0003-1899-6662>, Option
suppress_report),
Anh Tran [ctb] (Updated RStudio Project Template),
Sydney Purdue [ctb] (Improved wflow_start() error handling)
Maintainer: John Blischak <jdblischak@uchicago.edu>
Diff between workflowr versions 1.6.1 dated 2020-03-11 and 1.6.2 dated 2020-04-30
DESCRIPTION | 27 +++-- MD5 | 61 ++++++------- NEWS.md | 32 ++++++ R/utility.R | 6 - R/wflow_html.R | 59 ++++++++---- R/wflow_start.R | 3 R/wflow_start_rstudio.R |only R/wflow_use_github.R | 20 ++-- R/zzz.R | 1 inst/WORDLIST | 1 inst/doc/wflow-01-getting-started.html | 40 ++++---- inst/doc/wflow-02-customization.html | 6 - inst/doc/wflow-03-migrating.html | 6 - inst/doc/wflow-04-how-it-works.html | 6 - inst/doc/wflow-05-faq.Rmd | 14 +- inst/doc/wflow-05-faq.html | 12 +- inst/doc/wflow-06-gitlab.html | 6 - inst/doc/wflow-07-common-code.html | 6 - inst/doc/wflow-08-deploy.html | 6 - inst/doc/wflow-09-workshop.html | 6 - inst/doc/wflow-10-data.html | 6 - inst/rstudio/templates/project/wflow_start.dcf | 30 ++++++ tests/testthat/files/test-wflow_html/python-figure.Rmd |only tests/testthat/files/test-wflow_update/post/_workflowr.yml | 2 tests/testthat/test-utility.R | 4 tests/testthat/test-wflow_build.R | 1 tests/testthat/test-wflow_html.R | 50 +++++++++- tests/testthat/test-wflow_publish.R | 1 tests/testthat/test-wflow_run.R | 2 tests/testthat/test-wflow_start.R | 10 ++ tests/testthat/test-wflow_start_rstudio.R |only tests/testthat/test-wflow_status.R | 12 +- vignettes/wflow-05-faq.Rmd | 14 +- 33 files changed, 302 insertions(+), 148 deletions(-)
Title: Exploring Thematic Structure and Predicted Functionality of 16s
rRNA Amplicon Data
Description: A means to explore the structure of 16S rRNA surveys using a Structural
Topic Model coupled with functional prediction. The user provides an abundance
table, sample metadata, and taxonomy information, and themetagenomics infers
associations between topics and sample features, as well as topics and predicted
functional content. Functional prediction can be accomplished via Tax4Fun (for
Silva references) and PICRUSt (for GreenGeenes references). See
<doi:10.1371/journal.pone.0219235>.
Author: Stephen Woloszynek [aut, cre]
Maintainer: Stephen Woloszynek <sw424@drexel.edu>
Diff between themetagenomics versions 1.0.1 dated 2020-04-14 and 1.0.2 dated 2020-04-30
DESCRIPTION | 9 +++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 2 +- R/fit_hmc.R | 2 +- R/fit_ml.R | 6 +++--- R/formatting.R | 8 ++++---- R/prepare_data.R | 2 +- R/vis_covariates_binary.R | 6 +++--- R/vis_covariates_continuous.R | 14 +++++++------- R/vis_functions.R | 8 ++++---- R/vis_taxa.R | 4 ++-- R/vis_topics.R | 2 +- inst/doc/functional_prediction.html | 8 ++++---- inst/doc/thematic_structure.html | 10 +++++----- tests/testthat/test-topic-effects.R | 1 + 15 files changed, 56 insertions(+), 54 deletions(-)
More information about themetagenomics at CRAN
Permanent link
Title: Statistical Methods for Interval Censored Data
Description: Functions that provide statistical methods for interval censored (grouped) data. The package supports the estimation of linear and linear mixed regression models with interval censored dependent variables. Parameter estimates are obtained by a stochastic expectation maximization algorithm. Furthermore, the package enables the direct (without covariates) estimation of statistical indicators from interval censored data via an iterative kernel density algorithm. Survey and Organisation for Economic Co-operation and Development (OECD) weights can be included into the direct estimation (see, Walter, P. (2019) <doi:10.17169/refubium-1621>).
Author: Paul Walter
Maintainer: Paul Walter <paul.walter@fu-berlin.de>
Diff between smicd versions 1.0.3 dated 2019-02-11 and 1.1.0 dated 2020-04-30
DESCRIPTION | 12 ++++----- MD5 | 26 ++++++++++---------- NEWS.md | 5 +++ R/plot.kdeAlgo.R | 37 ++++++++++++++++++++++++++--- R/plot.sem.R | 57 +++++++++++++++++++++++++++++++++++++-------- R/summary.sem.R | 2 - build/vignette.rds |binary inst/doc/vignetteSmicd.pdf |binary man/Exam.Rd | 6 +++- man/kdeAlgo.Rd | 20 ++++++++++++--- man/semLm.Rd | 13 ++++++++-- man/semLme.Rd | 13 ++++++++-- man/smicd.Rd | 1 man/summary.sem.Rd | 2 - 14 files changed, 149 insertions(+), 45 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.1.3 dated 2020-01-28 and 1.1.4 dated 2020-04-30
DESCRIPTION | 14 ++-- MD5 | 65 ++++++++++----------- NAMESPACE | 7 -- NEWS.md | 11 +++ R/add_labels.R | 51 ++++++++-------- R/as_label.R | 32 +++++----- R/copy_labels.R | 18 ++--- R/drop_labels.R | 9 +- R/get_labels.R | 18 ++--- R/label_to_colnames.R | 58 +++++++++--------- R/read.R | 1 R/remove_labels.R | 16 +++-- R/zap_labels.R | 31 +++++----- build/vignette.rds |binary inst/doc/intro_sjlabelled.R | 6 + inst/doc/intro_sjlabelled.Rmd | 6 + inst/doc/intro_sjlabelled.html | 64 ++++++++++---------- inst/doc/labelleddata.R | 16 ++--- inst/doc/labelleddata.Rmd | 16 ++--- inst/doc/labelleddata.html | 40 ++++++------- inst/doc/quasiquotation.R | 5 + inst/doc/quasiquotation.Rmd | 5 + inst/doc/quasiquotation.html | 68 +++++++++++----------- man/add_labels.Rd | 51 ++++++++-------- man/as_label.Rd | 32 +++++----- man/copy_labels.Rd | 18 ++--- man/is_labelled.Rd | 34 +++++------ man/label_to_colnames.Rd | 68 +++++++++++----------- man/tidy_labels.Rd | 110 ++++++++++++++++++------------------ man/zap_na_tags.Rd | 31 +++++----- tests/testthat/test-remove_labels.R |only vignettes/intro_sjlabelled.Rmd | 6 + vignettes/labelleddata.Rmd | 16 ++--- vignettes/quasiquotation.Rmd | 5 + 34 files changed, 486 insertions(+), 442 deletions(-)
Title: Data Structures, Summaries, and Visualisations for Missing Data
Description: Missing values are ubiquitous in data and need to be explored and
handled in the initial stages of analysis. 'naniar' provides data structures
and functions that facilitate the plotting of missing values and examination
of imputations. This allows missing data dependencies to be explored with
minimal deviation from the common work patterns of 'ggplot2' and tidy data.
The work is fully discussed at Tierney & Cook (2018) <arXiv:1809.02264>.
Author: Nicholas Tierney [aut, cre] (<https://orcid.org/0000-0003-1460-8722>),
Di Cook [aut] (<https://orcid.org/0000-0002-3813-7155>),
Miles McBain [aut] (<https://orcid.org/0000-0003-2865-2548>),
Colin Fay [aut] (<https://orcid.org/0000-0001-7343-1846>),
Mitchell O'Hara-Wild [ctb],
Jim Hester [ctb],
Luke Smith [ctb]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between naniar versions 0.5.0 dated 2020-02-28 and 0.5.1 dated 2020-04-30
DESCRIPTION | 12 MD5 | 82 +- NEWS.md | 6 R/add-cols.R | 17 R/cast-shadows.R | 8 R/nabular.R | 2 R/shadows.R | 16 R/utils.R | 2 build/vignette.rds |binary inst/doc/exploring-imputed-values.html | 12 inst/doc/getting-started-w-naniar.R | 1 inst/doc/getting-started-w-naniar.Rmd | 1 inst/doc/getting-started-w-naniar.html | 31 - inst/doc/naniar-visualisation.html | 22 inst/doc/replace-with-na.R | 6 inst/doc/replace-with-na.Rmd | 6 inst/doc/replace-with-na.html | 10 inst/doc/special-missing-values.html | 4 man/common_na_numbers.Rd | 4 man/common_na_strings.Rd | 4 man/naniar-ggproto.Rd | 4 man/oceanbuoys.Rd | 4 man/pedestrian.Rd | 6 man/riskfactors.Rd | 4 tests/figs/gg-miss-case/gg-miss-case-group-and-sort-show-pct.svg | 296 ++++----- tests/figs/gg-miss-case/gg-miss-case-group-and-sort.svg | 296 ++++----- tests/figs/gg-miss-case/gg-miss-case-group-show-pct.svg | 296 ++++----- tests/figs/gg-miss-case/gg-miss-case-group.svg | 296 ++++----- tests/figs/gg-miss-case/gg-miss-case-plot-show-pct.svg | 304 +++++----- tests/figs/gg-miss-case/gg-miss-case-sort-show-pct.svg | 304 +++++----- tests/figs/gg-miss-case/gg-miss-case-sort.svg | 304 +++++----- tests/figs/gg-miss-case/gg-miss-case.svg | 304 +++++----- tests/figs/gg-miss-fct/gg-miss-fct.svg | 26 tests/figs/gg-miss-span/gg-miss-span-group.svg | 16 tests/figs/gg-miss-span/gg-miss-span.svg | 18 tests/figs/gg-miss-var-plot/gg-miss-var-group-pct.svg | 40 - tests/figs/gg-miss-var-plot/gg-miss-var-pct.svg | 10 tests/figs/gg-miss-var-plot/gg-miss-var-plot-group.svg | 40 - tests/figs/gg-miss-var-plot/gg-miss-var.svg | 10 tests/testthat/test-prop-cases-not-zero.R | 10 vignettes/getting-started-w-naniar.Rmd | 1 vignettes/replace-with-na.Rmd | 6 42 files changed, 1432 insertions(+), 1409 deletions(-)
Title: The Multivariate Normal and t Distributions
Description: Functions are provided for computing the density and the
distribution function of multivariate normal and "t" random variables,
and for generating random vectors sampled from these distributions.
Probabilities are computed via non-Monte Carlo methods; different routines
are used in the case d=1, d=2, d>2, if d denotes the number of dimensions.
Author: Fortran code by Alan Genz and other people referred to in the code,
R code by Adelchi Azzalini
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between mnormt versions 1.5-6 dated 2020-02-03 and 1.5-7 dated 2020-04-30
mnormt-1.5-6/mnormt/INDEX |only mnormt-1.5-7/mnormt/DESCRIPTION | 8 +-- mnormt-1.5-7/mnormt/MD5 | 19 ++++--- mnormt-1.5-7/mnormt/NAMESPACE | 2 mnormt-1.5-7/mnormt/NEWS | 54 +++++++++++++++++----- mnormt-1.5-7/mnormt/R/mnormt.R | 20 ++++---- mnormt-1.5-7/mnormt/R/sample_mardia.R |only mnormt-1.5-7/mnormt/man/dmnorm.Rd | 18 ++++--- mnormt-1.5-7/mnormt/man/dmt.Rd | 6 +- mnormt-1.5-7/mnormt/man/sample_Mardia_measures.Rd |only mnormt-1.5-7/mnormt/src/biv-nt.f | 4 - mnormt-1.5-7/mnormt/src/sadmvnt.f | 5 +- 12 files changed, 90 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-27 0.3-17
2019-01-16 0.3-16
2018-07-23 0.3-15
2016-09-21 0.3-14
2016-02-28 0.3-13
2016-01-04 0.3-12
2015-12-19 0.3-11
2014-06-23 0.3-4
2013-09-12 0.3-3
2012-01-17 0.3-2
2011-06-24 0.3-1
2011-03-31 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-08 0.4.8
2019-08-21 0.4.7
2019-04-03 0.4.6
2018-11-21 0.4.5
2018-06-10 0.4.4
2017-12-20 0.4.3
2017-11-18 0.4.2
2017-07-19 0.4.1
2017-05-29 0.4.0
2017-03-07 0.3.10
2016-09-26 0.3.9
2016-08-14 0.3.8
2016-05-15 0.3.7
2016-04-23 0.3.6
2016-03-28 0.3.5
2015-12-22 0.3.4
2015-11-26 0.3.3
2015-10-21 0.3.2
2015-08-18 0.3.1
2015-08-01 0.3.0
2015-07-08 0.2.5
2015-03-20 0.2.4
2015-02-22 0.2.3
2015-01-30 0.2.2
2015-01-08 0.2.1
2014-12-08 0.2.0
2014-11-06 0.1.3
2014-10-13 0.1.2
2014-09-01 0.1.1
2014-08-02 0.1.0
2014-07-11 0.0.9
2014-06-03 0.0.8
2013-10-01 0.0.7
2013-09-01 0.0.6
2013-08-03 0.0.5
2013-07-05 0.0.4
2013-06-02 0.0.3
2013-05-26 0.0.2
Title: Improved Standard Evaluation Interfaces for Common Data
Manipulation Tasks
Description: The 'seplyr' (standard evaluation plying) package supplies improved
standard evaluation adapter methods for important common 'dplyr' data manipulation tasks.
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), 'add_group_indices()' (which adds
per-group identifiers to a 'data.frame' without depending on row-order),
'partition_mutate_qt()' (which optimizes mutate sequences), and 'if_else_device()'
(which simulates per-row if-else blocks in expression sequences).
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.8.5 dated 2020-01-17 and 0.8.6 dated 2020-04-30
DESCRIPTION | 16 +++--- MD5 | 34 +++++++------ NEWS.md | 6 ++ R/complete_se.R | 19 +++---- R/group_mutate.R | 2 R/stmtPlanner.R | 56 ++++++++-------------- README.md | 10 ++++ build/vignette.rds |binary inst/doc/MutatePartitioner.html | 12 ++-- inst/doc/named_map_builder.html | 12 ++-- inst/doc/rename_se.html | 12 ++-- inst/doc/seplyr.html | 14 ++--- inst/doc/using_seplyr.html | 99 +++++++++++++++++++++++----------------- man/complete_se.Rd | 18 +++---- man/group_mutate.Rd | 2 man/if_else_device.Rd | 56 ++++++++-------------- tests/testthat/test_basic.R | 69 ++++++++++++++++++++------- tests/testthat/test_gather.R |only tests/testthat/test_spread.R |only 19 files changed, 234 insertions(+), 203 deletions(-)
Title: Spectral Transmittance Data for Filters
Description: Spectral 'transmittance' data for frequently used filters and
similar materials. Plastic sheets and films; photography filters;
theatrical gels; machine-vision filters; various types of window glass;
optical glass and some laboratory plastics and glassware. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (Contributed data),
Tania de la Rosa [ctb] (Contributed data),
Riitta Tegelberg [ctb] (Contributed data),
Andreas Albert [ctb] (Contributed data),
SCHOTT AG [ctb] (Contributed data),
Midwest Optical Systems, Inc. (MidOpt) [ctb] (Contributed data)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyFilters versions 0.5.0 dated 2019-06-26 and 0.5.1 dated 2020-04-30
DESCRIPTION | 18 - MD5 | 79 ++--- NEWS | 10 R/bpi-visqueen.r | 2 R/evonik.r | 2 R/foiltek.r | 2 R/mcdermit.r | 2 R/midopt.r | 4 R/photobiologyFilters.R | 2 R/photography-filters.r | 21 + R/refractive-index-mspct.r |only R/schott.r | 2 R/theatrical-gels.r | 4 R/xl-horticulture.r | 2 build/vignette.rds |binary data/filters-mspct.rda |binary data/refractive-index.rda |only inst/doc/user-guide.R | 108 ++++-- inst/doc/user-guide.Rmd | 149 +++++++-- inst/doc/user-guide.html | 577 +++++++++++++++++++++++-------------- man/acetate_filters.Rd | 144 +++++---- man/all_filter_accessors.Rd | 46 +- man/band_pass_filters.Rd | 88 +++-- man/bpi_visqueen_filters.Rd | 74 ++-- man/clear_filters.Rd | 134 +++++--- man/courtaulds_filters.Rd | 82 ++--- man/etola_filters.Rd | 64 ++-- man/evonik_filters.Rd | 74 ++-- man/filters.mspct.Rd | 66 ++-- man/foiltek_filters.Rd | 84 ++--- man/glass_windows.Rd | 68 ++-- man/mcdermit_filters.Rd | 66 ++-- man/midopt_filters.Rd | 84 ++--- man/petri_dishes.Rd | 70 ++-- man/photobiologyFilters-package.Rd | 252 ++++++++-------- man/photography_filters.Rd | 208 ++++++++----- man/refractive_index.mspct.Rd |only man/schott_filters.Rd | 118 +++---- man/theatrical_gels.Rd | 112 +++---- man/uqg_filters.Rd | 86 ++--- man/xl_horticulture_filters.Rd | 74 ++-- vignettes/user-guide.Rmd | 149 +++++++-- 42 files changed, 1829 insertions(+), 1298 deletions(-)
More information about photobiologyFilters at CRAN
Permanent link
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://data.neonscience.org/home>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON (National Ecological Observatory Network) [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 1.3.3 dated 2020-01-08 and 1.3.4 dated 2020-04-30
DESCRIPTION | 26 +-- MD5 | 80 +++++++---- R/byFileAOP.R | 137 +++++++++++--------- R/byTileAOP.R | 192 ++++++++++++++++------------ R/cleanUp.R | 19 +- R/footRaster.R | 92 +++++++++++++ R/getAPI.R |only R/getAvg.R | 8 - R/getDatatable.R | 20 +- R/getFileUrls.R |only R/getProductInfo.R | 10 - R/getTaxonTable.R | 27 ---- R/getTileUrls.R |only R/getZipUrls.R |only R/loadByProduct.R | 35 +++-- R/quietMessages.R |only R/readTableNEON.R | 2 R/shared_flights.R |only R/stackByTable.R | 49 ++++--- R/stackDataFilesParallel.R | 29 +++- R/stackEddy.R | 55 ++------ R/sysdata.rda |binary R/table_types.R | 8 - R/unzipZipfileParallel.R | 33 +++- R/zipsByProduct.R | 294 +++++++++++--------------------------------- README.md | 21 ++- data |only man/byFileAOP.Rd | 5 man/byTileAOP.Rd | 15 +- man/cleanUp.Rd | 2 man/getAPI.Rd |only man/getAvg.Rd | 4 man/getDatatable.Rd | 19 ++ man/getFileUrls.Rd |only man/getPackage.Rd | 3 man/getProductInfo.Rd | 4 man/getTaxonTable.Rd | 24 +-- man/getTileUrls.Rd |only man/getZipUrls.Rd |only man/loadByProduct.Rd | 17 ++ man/quietMessages.Rd |only man/shared_flights.Rd |only man/stackByTable.Rd | 10 + man/table_types.Rd | 12 + man/unzipZipfileParallel.Rd | 8 - man/zipsByProduct.Rd | 17 ++ man/zipsByURI.Rd | 11 + 47 files changed, 683 insertions(+), 605 deletions(-)
Title: German Polling Data
Description: Extracts political polling data from <http://wahlrecht.de>.
Author: Katharina Brunner [aut, cre]
Maintainer: Katharina Brunner <mail@katharina-brunner.de>
Diff between germanpolls versions 0.2 dated 2019-01-08 and 0.3 dated 2020-04-30
DESCRIPTION | 11 ++++++----- MD5 | 10 ++++++---- NAMESPACE | 9 +++++---- R/get_data_from_xml_de.R | 34 ++++++++++++---------------------- R/get_data_from_xml_laender.R | 35 ++++++++++++----------------------- tests |only 6 files changed, 41 insertions(+), 58 deletions(-)
Title: Domain Specific MetaData Scheme
Description: Forms the core for developing own domain specific metadata schemes.
It contains the basic functionality needed for all metadata schemes based on the
'dmdScheme'. See R.M. Krug and O.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.
Author: Rainer M. Krug [aut, cre] (<https://orcid.org/0000-0002-7490-0066>),
Owen L. Petchey [ctb] (<https://orcid.org/0000-0002-7724-1633>)
Maintainer: Rainer M. Krug <Rainer.Krug@uzh.ch>
Diff between dmdScheme versions 1.1.0 dated 2020-03-18 and 1.1.2 dated 2020-04-30
DESCRIPTION | 10 MD5 | 50 +-- NAMESPACE | 13 R/as_dmdScheme.xml_document.R | 2 R/as_eml.R |only R/as_eml.default.R |only R/imports_eml.R |only R/make_example.R | 13 R/open_new_spreadsheet.R | 6 R/report.dmdScheme_validation.R | 14 R/validate.dmdSchemeSet_raw.R | 2 R/validate_func.R | 169 +++++++--- build/vignette.rds |binary inst/doc/Howto_create_new_scheme.html | 10 inst/doc/minimum_requirements_dmdscheme.html | 4 inst/doc/r_package_introduction.html | 181 +++++------ inst/shiny_apps/dmd_app/rsconnect |only inst/shiny_apps/dmd_app/server.R | 41 +- man/as_eml.Rd |only man/new_dmdScheme_validation.Rd |only man/reexports.Rd |only man/validateAllowedValues.Rd |only man/validateDataFileMetaDataDataFileExists.Rd |only man/validateIDField.Rd |only man/validateStructure.Rd |only man/validateSuggestedValues.Rd |only man/validateTypes.Rd |only tests/testthat/ref-08-validate.character.CORRECT.rda |binary tests/testthat/ref-08-validate.dmdScheme.CORRECT.rda |binary tests/testthat/ref-09-print.dmdScheme.validation.details.txt | 132 ++++---- tests/testthat/ref-09-print.dmdScheme.validation.summary.txt | 20 - tests/testthat/test-03-as_dmdScheme_raw.R | 10 tests/testthat/test-04-1-as_eml.R |only 33 files changed, 403 insertions(+), 274 deletions(-)
Title: Wrapper for 'TCdata360' and 'Govdata360' API
Description: Makes it easy to engage with the Application Program Interface (API)
of the 'TCdata360' and 'Govdata360' platforms at <https://tcdata360.worldbank.org/>
and <https://govdata360.worldbank.org/>, respectively.
These application program interfaces provide access to over 5000 trade, competitiveness, and governance
indicator data, metadata, and related information from sources
both inside and outside the World Bank Group.
Package functions include easier download of data sets, metadata, and
related information, as well as searching based on user-inputted query.
Author: Ramin Aliyev [cre],
Ma. Regina Paz Onglao-Drilon [aut],
World Bank Group [cph]
Maintainer: Ramin Aliyev <tcdata360@worldbank.org>
Diff between data360r versions 1.0.6 dated 2020-04-28 and 1.0.8 dated 2020-04-30
DESCRIPTION | 16 +++++++++------- MD5 | 2 +- 2 files changed, 10 insertions(+), 8 deletions(-)
Title: Preprocessing Tools to Create Design Matrices
Description: An extensible framework to create and preprocess
design matrices. Recipes consist of one or more data manipulation
and analysis "steps". Statistical parameters for the steps can
be estimated from an initial data set and then applied to
other data sets. The resulting design matrices can then be used
as inputs into statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.10 dated 2020-03-18 and 0.1.11 dated 2020-04-30
recipes-0.1.10/recipes/inst/doc/Custom_Steps.R |only recipes-0.1.11/recipes/DESCRIPTION | 8 recipes-0.1.11/recipes/MD5 | 86 +- recipes-0.1.11/recipes/NAMESPACE | 2 recipes-0.1.11/recipes/NEWS.md | 8 recipes-0.1.11/recipes/R/0_imports.R | 4 recipes-0.1.11/recipes/R/bag_imp.R | 2 recipes-0.1.11/recipes/R/bs.R | 2 recipes-0.1.11/recipes/R/cut.R |only recipes-0.1.11/recipes/R/date.R | 7 recipes-0.1.11/recipes/R/discretize.R | 2 recipes-0.1.11/recipes/R/holiday.R | 2 recipes-0.1.11/recipes/R/ica.R | 11 recipes-0.1.11/recipes/R/isomap.R | 4 recipes-0.1.11/recipes/R/knn_imp.R | 2 recipes-0.1.11/recipes/R/kpca_poly.R | 2 recipes-0.1.11/recipes/R/kpca_rbf.R | 2 recipes-0.1.11/recipes/R/lowerimpute.R | 2 recipes-0.1.11/recipes/R/misc.R | 7 recipes-0.1.11/recipes/R/nnmf.R | 4 recipes-0.1.11/recipes/R/pca.R | 2 recipes-0.1.11/recipes/R/pls.R | 2 recipes-0.1.11/recipes/R/ratio.R | 14 recipes-0.1.11/recipes/R/recipe.R | 2 recipes-0.1.11/recipes/build/vignette.rds |binary recipes-0.1.11/recipes/inst/doc/Custom_Steps.Rmd | 279 ------- recipes-0.1.11/recipes/inst/doc/Custom_Steps.html | 365 ---------- recipes-0.1.11/recipes/inst/doc/Simple_Example.html | 64 - recipes-0.1.11/recipes/man/step_cut.Rd |only recipes-0.1.11/recipes/tests/testthat/test_center_scale_norm.R | 4 recipes-0.1.11/recipes/tests/testthat/test_colcheck.R | 4 recipes-0.1.11/recipes/tests/testthat/test_cut.R |only recipes-0.1.11/recipes/tests/testthat/test_holiday.R | 3 recipes-0.1.11/recipes/tests/testthat/test_ica.R | 12 recipes-0.1.11/recipes/tests/testthat/test_intercept.R | 4 recipes-0.1.11/recipes/tests/testthat/test_knnimpute.R | 14 recipes-0.1.11/recipes/tests/testthat/test_lag.R | 2 recipes-0.1.11/recipes/tests/testthat/test_missing.R | 2 recipes-0.1.11/recipes/tests/testthat/test_naomit.R | 13 recipes-0.1.11/recipes/tests/testthat/test_newvalues.R | 25 recipes-0.1.11/recipes/tests/testthat/test_ratio.R | 6 recipes-0.1.11/recipes/tests/testthat/test_shuffle.R | 2 recipes-0.1.11/recipes/tests/testthat/test_tidy.R | 4 recipes-0.1.11/recipes/vignettes/Custom_Steps.Rmd | 279 ------- recipes-0.1.11/recipes/vignettes/articles/Multivariate_PLS.Rmd | 153 ---- recipes-0.1.11/recipes/vignettes/articles/Subsampling.Rmd | 207 ----- 46 files changed, 185 insertions(+), 1434 deletions(-)
Title: Modelling Functions that Work with the Pipe
Description: Functions for modelling that help you seamlessly
integrate modelling into a pipeline of data manipulation and
visualisation.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between modelr versions 0.1.6 dated 2020-02-22 and 0.1.7 dated 2020-04-30
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/bootstrap.R | 2 +- R/cross-validation.R | 6 +++--- R/data.R | 7 ++++++- R/permute.R | 2 +- R/predictions.R | 2 +- R/residuals.R | 2 +- README.md | 11 ++++++----- man/add_predictions.Rd | 2 +- man/add_residuals.Rd | 2 +- man/heights.Rd | 8 +++++--- man/sim.Rd | 1 - 14 files changed, 47 insertions(+), 36 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] (tommy hash table library)
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.3.0 dated 2020-04-19 and 0.3.1 dated 2020-04-30
DESCRIPTION | 8 +- MD5 | 44 +++++------ NAMESPACE | 2 R/deque.R | 7 - R/dict.R | 15 +-- R/ordered_dict.R | 18 ++-- R/queue.R | 3 R/zzz.R | 2 man/deprecated.Rd | 4 - src/collections.c | 10 +- src/deque.c | 137 +++++++++++++++++++++++++---------- src/deque.h | 8 +- src/dict.c | 13 ++- src/dict.h | 6 - src/queue.c | 42 +++++++++- src/queue.h | 2 src/utils.c | 26 ++++++ src/utils.h | 6 + tests/testthat/test-deque.R | 17 ++++ tests/testthat/test-ordered_dict.R | 15 +++ tests/testthat/test-priority_queue.R | 10 ++ tests/testthat/test-queue.R | 10 ++ tests/testthat/test-stack.R | 10 ++ 23 files changed, 301 insertions(+), 114 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott is the sole author and creator of the BOOM project.
Some code in the BOOM libraries has been modified from other open source
projects. These include Cephes (obtained from Netlib, written by Stephen
L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a
modified version of the R math libraries (R core development team). Original
copyright notices have been maintained in all source files. In these cases,
copyright claimed by Steven L. Scott is limited to modifications made to the
original code. Google claims copyright for code written while Steven
L. Scott was employed at Google from 2008 - 2018, but BOOM is not an
officially supported Google project.
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9.5 dated 2020-04-15 and 0.9.6 dated 2020-04-30
DESCRIPTION | 8 MD5 | 104 +++++----- R/plot.dynamic.distribution.R | 18 + inst/include/LinAlg/Array.hpp | 14 - inst/include/LinAlg/DiagonalMatrix.hpp | 10 inst/include/LinAlg/Eigen.hpp | 2 inst/include/LinAlg/Matrix.hpp | 16 - inst/include/LinAlg/SWEEP.hpp | 2 inst/include/LinAlg/SpdMatrix.hpp | 8 inst/include/LinAlg/VectorView.hpp | 8 inst/include/Models/DataTypes.hpp | 8 inst/include/Models/Glm/GlmCoefs.hpp | 16 - inst/include/Models/Glm/PosteriorSamplers/IndependentRegressionModelsPosteriorSampler.hpp | 6 inst/include/Models/Glm/VariableSelectionPrior.hpp | 20 - inst/include/Models/HMM/Clickstream/PosteriorSamplers/NestedHmmPosteriorSampler.hpp | 4 inst/include/Models/IRT/ItemSliceSampler.hpp | 3 inst/include/Models/MarkovModel.hpp | 2 inst/include/Models/Mixtures/DirichletProcessMvnModel.hpp | 2 inst/include/Models/Mixtures/PosteriorSamplers/ConditionalFiniteMixtureSampler.hpp | 5 inst/include/Models/Mixtures/PosteriorSamplers/DirichletProcessCollapsedGibbsSampler.hpp | 2 inst/include/Models/Mixtures/PosteriorSamplers/DirichletProcessSliceSampler.hpp | 7 inst/include/Models/Mixtures/PosteriorSamplers/SplitMerge.hpp | 5 inst/include/Models/Nnet/PosteriorSamplers/GaussianFeedForwardPosteriorSampler.hpp | 13 - inst/include/Models/Policies/DeferredDataPolicy.hpp | 15 - inst/include/Models/StateSpace/DynamicRegression.hpp |only inst/include/Models/StateSpace/PosteriorSamplers/DynamicInterceptRegressionPosteriorSampler.hpp | 13 - inst/include/Models/StateSpace/PosteriorSamplers/DynamicRegressionDirectGibbs.hpp |only inst/include/Models/StateSpace/PosteriorSamplers/MultivariateStateSpaceModelSampler.hpp | 13 - inst/include/Models/StateSpace/PosteriorSamplers/MvStateSpaceRegressionPosteriorSampler.hpp | 8 inst/include/Models/StateSpace/StateModels/SeasonalStateModel.hpp | 4 inst/include/Models/TimeSeries/MarkovLink.hpp | 15 - inst/include/Samplers/failed_experiments/AdaptiveGaussianMixtureMhSampler.hpp | 5 inst/include/Samplers/failed_experiments/AdaptiveRandomWalkMetropolisSampler.hpp | 7 src/Models/Glm/GlmCoefs.cpp | 47 ++-- src/Models/Glm/PosteriorSamplers/AdaptiveSpikeSlabRegressionSampler.cpp | 16 - src/Models/Glm/PosteriorSamplers/BregVsSampler.cpp | 14 - src/Models/Glm/PosteriorSamplers/MlogitRwm.cpp | 1 src/Models/Glm/RegressionModel.cpp | 5 src/Models/HMM/HMM2.cpp | 3 src/Models/HMM/HealthStateModel.cpp | 2 src/Models/Hierarchical/PosteriorSamplers/HierarchicalZeroInflatedPoissonSampler.cpp | 6 src/Models/IRT/DafePcrRwmSubject.cpp | 1 src/Models/IRT/IrtModel.cpp | 3 src/Models/MarkovModel.cpp | 12 - src/Models/PosteriorSamplers/AbsorbingMarkovConjSampler.cpp | 1 src/Models/StateSpace/AggregatedStateSpaceRegression.cpp | 2 src/Models/StateSpace/DynamicRegression.cpp |only src/Models/StateSpace/MultivariateStateSpaceModelBase.cpp | 15 - src/Models/StateSpace/PosteriorSamplers/DynamicRegressionDirectGibbs.cpp |only src/Models/StateSpace/StateModels/LocalLevelStateModel.cpp | 17 - src/Models/WeightedMvnModel.cpp | 1 src/TargetFun/Transformation.cpp | 1 src/cpputil/split.cpp | 3 src/list_io.cpp | 28 +- src/stats/NaturalSpline.cpp | 2 55 files changed, 278 insertions(+), 265 deletions(-)
Title: Handling Vegetation Data Sets
Description: Import and handling data from vegetation-plot databases, especially
data stored in 'Turboveg' (<https://www.synbiosys.alterra.nl/turboveg>).
Also import/export routines for exchange of data with 'Juice'
(<http://www.sci.muni.cz/botany/juice>) are implemented.
Author: Miguel Alvarez [aut, cre] (<https://orcid.org/0000-0003-1500-1834>)
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between vegtable versions 0.1.5 dated 2020-01-13 and 0.1.6 dated 2020-04-30
vegtable-0.1.5/vegtable/R/coverconvert-methods.R |only vegtable-0.1.5/vegtable/R/cross2db.R |only vegtable-0.1.5/vegtable/R/read_juice.R |only vegtable-0.1.5/vegtable/R/relation2header.R |only vegtable-0.1.5/vegtable/R/shaker-methods.R |only vegtable-0.1.5/vegtable/R/taxa2samples.R |only vegtable-0.1.5/vegtable/R/trait_proportion.R |only vegtable-0.1.5/vegtable/R/tv2coverconvert.R |only vegtable-0.1.5/vegtable/man/coverconvert-class.Rd |only vegtable-0.1.5/vegtable/man/read_juice.Rd |only vegtable-0.1.5/vegtable/man/shaker-methods.Rd |only vegtable-0.1.5/vegtable/man/tv2coverconvert.Rd |only vegtable-0.1.5/vegtable/tests |only vegtable-0.1.6/vegtable/DESCRIPTION | 32 - vegtable-0.1.6/vegtable/MD5 | 168 ++++------ vegtable-0.1.6/vegtable/NAMESPACE | 137 ++++---- vegtable-0.1.6/vegtable/NEWS.md | 12 vegtable-0.1.6/vegtable/R/Extract.R | 82 ++++- vegtable-0.1.6/vegtable/R/Kenya_veg-data.R |only vegtable-0.1.6/vegtable/R/NULLing.R | 6 vegtable-0.1.6/vegtable/R/StartMessage.R | 6 vegtable-0.1.6/vegtable/R/Wetlands-data.R |only vegtable-0.1.6/vegtable/R/add_releves.R | 107 +++++- vegtable-0.1.6/vegtable/R/aggregate.R | 32 + vegtable-0.1.6/vegtable/R/as.list.R | 42 ++ vegtable-0.1.6/vegtable/R/aspect_con-data.R |only vegtable-0.1.6/vegtable/R/braun_blanquet-data.R |only vegtable-0.1.6/vegtable/R/clean.R | 37 +- vegtable-0.1.6/vegtable/R/count_taxa.R | 62 +++ vegtable-0.1.6/vegtable/R/coverconvert-class.R | 38 +- vegtable-0.1.6/vegtable/R/crosstable.R | 97 +++++ vegtable-0.1.6/vegtable/R/df2vegtable.R | 159 ++++++--- vegtable-0.1.6/vegtable/R/dune_veg-data.R |only vegtable-0.1.6/vegtable/R/header.R | 41 +- vegtable-0.1.6/vegtable/R/imports.R |only vegtable-0.1.6/vegtable/R/layers2samples.R | 43 ++ vegtable-0.1.6/vegtable/R/make_cocktail.R | 343 ++++++++++++++++++++- vegtable-0.1.6/vegtable/R/match_names.R | 29 + vegtable-0.1.6/vegtable/R/merge_taxa.R | 120 ++++++- vegtable-0.1.6/vegtable/R/names.R | 58 ++- vegtable-0.1.6/vegtable/R/shaker-class.R | 53 ++- vegtable-0.1.6/vegtable/R/subset.R | 129 ++++--- vegtable-0.1.6/vegtable/R/summary.R | 79 +++- vegtable-0.1.6/vegtable/R/trait_stats.R | 243 ++++++++++++++ vegtable-0.1.6/vegtable/R/transform.R |only vegtable-0.1.6/vegtable/R/tv2vegtable.R | 337 +++++++++++++------- vegtable-0.1.6/vegtable/R/used_synonyms.R | 49 ++- vegtable-0.1.6/vegtable/R/veg_relation.R | 103 +++++- vegtable-0.1.6/vegtable/R/vegtable-class.R | 36 +- vegtable-0.1.6/vegtable/R/vegtable2kml.R | 58 +++ vegtable-0.1.6/vegtable/R/vegtable_stat.R | 236 +++++++------- vegtable-0.1.6/vegtable/R/write_juice.R | 129 +++++++ vegtable-0.1.6/vegtable/data/Kenya_veg.rda |binary vegtable-0.1.6/vegtable/data/Wetlands.rda |binary vegtable-0.1.6/vegtable/data/aspect_conv.rda |binary vegtable-0.1.6/vegtable/data/braun_blanquet.rda |binary vegtable-0.1.6/vegtable/data/dune_veg.rda |binary vegtable-0.1.6/vegtable/man/Extract.Rd | 117 +++---- vegtable-0.1.6/vegtable/man/Kenya_veg-data.Rd | 95 ++--- vegtable-0.1.6/vegtable/man/Wetlands-data.Rd | 76 ++-- vegtable-0.1.6/vegtable/man/add_releves.Rd | 115 ++++--- vegtable-0.1.6/vegtable/man/aggregate.Rd | 75 ++-- vegtable-0.1.6/vegtable/man/as.list.Rd | 87 ++--- vegtable-0.1.6/vegtable/man/aspect_conv-data.Rd | 49 +-- vegtable-0.1.6/vegtable/man/braun_blanquet-data.Rd | 76 ++-- vegtable-0.1.6/vegtable/man/clean.Rd | 87 ++--- vegtable-0.1.6/vegtable/man/count_taxa.Rd | 124 ++++--- vegtable-0.1.6/vegtable/man/coverconvert.Rd |only vegtable-0.1.6/vegtable/man/crosstable.Rd | 154 +++++---- vegtable-0.1.6/vegtable/man/df2vegtable.Rd | 117 +++---- vegtable-0.1.6/vegtable/man/dune_veg-data.Rd | 63 ++- vegtable-0.1.6/vegtable/man/format_F2.Rd |only vegtable-0.1.6/vegtable/man/header.Rd | 66 ++-- vegtable-0.1.6/vegtable/man/layers2samples.Rd | 76 ++-- vegtable-0.1.6/vegtable/man/make_cocktail.Rd |only vegtable-0.1.6/vegtable/man/match_names.Rd | 64 +-- vegtable-0.1.6/vegtable/man/merge_taxa.Rd | 138 ++++---- vegtable-0.1.6/vegtable/man/names.Rd | 94 ++--- vegtable-0.1.6/vegtable/man/rewrite_formulas.Rd |only vegtable-0.1.6/vegtable/man/shaker-class.Rd | 86 ++--- vegtable-0.1.6/vegtable/man/subset.Rd | 100 +++--- vegtable-0.1.6/vegtable/man/summary.Rd | 115 +++---- vegtable-0.1.6/vegtable/man/trait_stats.Rd | 235 ++++++++------ vegtable-0.1.6/vegtable/man/transform.Rd | 157 ++++----- vegtable-0.1.6/vegtable/man/tv2vegtable.Rd | 148 +++++---- vegtable-0.1.6/vegtable/man/used_synonyms.Rd | 95 ++--- vegtable-0.1.6/vegtable/man/veg_relation.Rd | 123 +++---- vegtable-0.1.6/vegtable/man/vegtable-class.Rd | 83 ++--- vegtable-0.1.6/vegtable/man/vegtable2kml.Rd | 111 +++--- vegtable-0.1.6/vegtable/man/vegtable_stat.Rd | 59 +-- vegtable-0.1.6/vegtable/man/write_juice.Rd | 153 +++++---- 91 files changed, 4041 insertions(+), 2200 deletions(-)
Title: Tidy Interface to 'data.table'
Description: Tidy interface to 'data.table'. 'rlang' compatible, which allows the user to build custom functions much like they would in the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.4.0 dated 2020-03-28 and 0.4.1 dated 2020-04-30
DESCRIPTION | 13 +-- MD5 | 164 ++++++++++++++++++++-------------------- NAMESPACE | 49 +++++------ NEWS.md | 30 +++++++ R/arrange.R | 18 +--- R/as_tidytable.R | 36 ++++++-- R/bind.R | 20 ++-- R/case.R | 46 ++++------- R/count.R | 19 +--- R/desc.R |only R/distinct.R | 32 ++++--- R/drop_na.R | 26 +----- R/dt.R | 15 ++- R/fill.R | 47 ++++++----- R/filter.R | 14 --- R/get_dummies.R | 67 +++++----------- R/group_split.R | 29 +++---- R/ifelse.R | 17 +++- R/join.R | 21 +++-- R/map.R | 2 R/mutate.R | 15 --- R/mutate_across.R | 35 +++----- R/mutate_variants.R | 2 R/nest.R | 21 +---- R/pivot_longer.R | 39 ++------- R/pivot_wider.R | 53 ++++-------- R/pull.R | 11 -- R/relocate.R | 24 ++--- R/rename.R | 11 -- R/rename_variants.R | 12 -- R/rename_with.R | 15 +-- R/select.R | 28 +++--- R/select_helpers.R | 54 ++++--------- R/separate.R | 20 ---- R/slice.R | 51 +++--------- R/summarize.R | 16 +-- R/tidytable_package.R | 34 +++++++- R/top_n.R | 14 --- R/transmute.R | 22 +---- R/unite.R |only R/unnest.R | 81 ++++++++++++++----- R/utils-general.R | 1 R/utils-selectors.R | 75 +----------------- R/zzz.R | 7 + README.md | 90 ++++++++++----------- man/arrange..Rd | 7 + man/bind_rows..Rd | 10 +- man/case..Rd | 17 ++-- man/count..Rd | 8 - man/desc..Rd |only man/distinct..Rd | 15 ++- man/drop_na..Rd | 7 - man/dt.Rd | 2 man/figures/logo.png |binary man/fill..Rd | 6 - man/filter..Rd | 2 man/get_dummies..Rd | 22 +++-- man/group_split..Rd | 15 ++- man/ifelse..Rd | 6 - man/map..Rd | 2 man/mutate_across..Rd | 11 +- man/mutate_if..Rd | 2 man/nest_by..Rd | 5 - man/pivot_longer..Rd | 7 - man/pivot_wider..Rd | 21 +++-- man/reexports.Rd |only man/relocate..Rd | 4 man/rename_with..Rd | 2 man/select..Rd | 9 +- man/starts_with..Rd | 39 ++++++--- man/summarize..Rd | 4 man/transmute..Rd | 3 man/unite..Rd |only man/unnest..Rd | 12 +- tests/testthat/test-arrange.R | 12 ++ tests/testthat/test-case_when.R | 47 +++++++++++ tests/testthat/test-dt.R | 26 ++++++ tests/testthat/test-fill.R | 10 +- tests/testthat/test-ifelse.R | 12 ++ tests/testthat/test-join.R | 55 +++++++++++++ tests/testthat/test-mutate.R | 22 ++--- tests/testthat/test-relocate.R | 6 + tests/testthat/test-select.R | 9 ++ tests/testthat/test-summarize.R | 23 ++++- tests/testthat/test-unite.R |only tests/testthat/test-unnest.R | 72 +++++++++++++++++ 86 files changed, 1048 insertions(+), 880 deletions(-)
Title: Functions for the Analysis of Star Trek Thematic Data
Description: An implementation of 1) the hypergeometric test for over-representation of literary themes in a storyset (a list of stories) relative to a background list of stories, and 2) a recommendation system that takes a user-selected story as input and returns a ranked list of similar stories on the basis of shared themes. The package is currently implemented for the episodes of the Star Trek television franchise series The Original Series (TOS), The Animated Series (TAS), The Next Generation (TNG), and Voyager (VOY).
Author: Paul Sheridan, Mikael Onsjö
Maintainer: Paul Sheridan <paul.sheridan.stats@gmail.com>
Diff between stoRy versions 0.1.3 dated 2019-07-09 and 0.1.4 dated 2020-04-30
DESCRIPTION | 10 +-- MD5 | 36 ++++++------ NEWS.md | 4 + build/vignette.rds |binary inst/doc/vignette.R | 54 +++++++++--------- inst/doc/vignette.Rnw | 2 inst/doc/vignette.pdf |binary man/get_enriched_themes.Rd | 10 ++- man/get_similar_stories.Rd | 9 ++- man/story.Rd | 134 +++++++++++++++++++++++++++++++++++++++++---- man/story_ids_by_theme.Rd | 4 + man/story_keywords.Rd | 4 + man/story_metadata.Rd | 4 + man/story_settings.Rd | 4 + man/story_themes.Rd | 4 + man/storysets.Rd | 55 +++++++++++++++--- man/theme.Rd | 59 +++++++++++++++++-- man/theme_dict.Rd | 4 + vignettes/vignette.Rnw | 2 19 files changed, 306 insertions(+), 93 deletions(-)
Title: Summary Tables for Statistical Models: Beautiful, Customizable,
and Publication-Ready
Description: Create beautiful, customizable, publication-ready summary tables
for statistical models. 'modelsummary' leverages the power of the 'gt' and
'broom' packages. It can produce tables in HTML, RTF, JPG, and LaTeX formats.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 0.2.0 dated 2020-04-05 and 0.2.1 dated 2020-04-30
modelsummary-0.2.0/modelsummary/man/tidy.mira.lm.Rd |only modelsummary-0.2.1/modelsummary/DESCRIPTION | 11 - modelsummary-0.2.1/modelsummary/MD5 | 56 ++++---- modelsummary-0.2.1/modelsummary/NAMESPACE | 3 modelsummary-0.2.1/modelsummary/NEWS.md | 7 + modelsummary-0.2.1/modelsummary/R/convenience.R |only modelsummary-0.2.1/modelsummary/R/extract.R | 10 + modelsummary-0.2.1/modelsummary/R/extract_estimates.R | 11 + modelsummary-0.2.1/modelsummary/R/extract_gof.R | 62 +++++--- modelsummary-0.2.1/modelsummary/R/extract_statistic_override.R | 2 modelsummary-0.2.1/modelsummary/R/gof_map.R | 11 + modelsummary-0.2.1/modelsummary/R/modelsummary.R | 39 ++--- modelsummary-0.2.1/modelsummary/R/sanity_checks.R | 12 - modelsummary-0.2.1/modelsummary/R/stars.R |only modelsummary-0.2.1/modelsummary/R/tidiers.R | 69 +--------- modelsummary-0.2.1/modelsummary/README.md | 2 modelsummary-0.2.1/modelsummary/man/clean_stars.Rd |only modelsummary-0.2.1/modelsummary/man/extract.Rd | 4 modelsummary-0.2.1/modelsummary/man/extract_estimates.Rd | 4 modelsummary-0.2.1/modelsummary/man/extract_statistic_override.Rd | 8 - modelsummary-0.2.1/modelsummary/man/fmt_labels_md.Rd |only modelsummary-0.2.1/modelsummary/man/glance.mira.Rd | 5 modelsummary-0.2.1/modelsummary/man/gof_map.Rd | 17 ++ modelsummary-0.2.1/modelsummary/man/make_stars_note.Rd |only modelsummary-0.2.1/modelsummary/man/modelsummary.Rd | 15 +- modelsummary-0.2.1/modelsummary/man/msummary.Rd | 17 +- modelsummary-0.2.1/modelsummary/man/sanity_checks.Rd | 8 - modelsummary-0.2.1/modelsummary/man/statistic_override_function.Rd | 4 modelsummary-0.2.1/modelsummary/man/statistic_override_lmtest.Rd | 4 modelsummary-0.2.1/modelsummary/man/statistic_override_matrix.Rd | 4 modelsummary-0.2.1/modelsummary/man/statistic_override_vector.Rd | 4 modelsummary-0.2.1/modelsummary/man/tidy.mira.Rd | 39 +---- 32 files changed, 200 insertions(+), 228 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-10 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-20 0.0-4
2012-09-14 0.0-3
2012-07-03 0.0-2
2012-06-12 0.0-1
Title: Java Graphics Device
Description: Graphics device routing all graphics commands to a Java
program. The actual functionality of the JavaGD depends
on the Java-side implementation. Simple AWT and Swing
implementations are included.
Author: Simon Urbanek <Simon.Urbanek@R-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@R-project.org>
Diff between JavaGD versions 0.6-1.1 dated 2019-04-15 and 0.6-2 dated 2020-04-30
DESCRIPTION | 18 +++++++++--------- MD5 | 14 +++++++------- NAMESPACE | 3 +++ NEWS | 9 +++++++++ configure | 8 +------- configure.ac | 3 +-- inst/java/javaGD.jar |binary src/javaGD.h | 2 +- 8 files changed, 31 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-12 1.4.6
2016-09-20 1.4.2
2016-03-07 1.4.0
2015-11-09 1.2.7
2015-07-07 1.2.3
2015-03-25 1.2.0
2015-02-25 1.1.7
2015-01-15 1.1.5
2015-01-05 1.1.4
2014-11-13 1.1.2
2014-10-06 1.1.0
2014-09-24 1.0.1
2014-08-14 0.7.7
2013-07-17 0.7.5
2013-06-09 0.7.3
2012-01-17 0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-29 1.8.0
2019-04-16 1.7.8
2019-03-06 1.7.7
2018-07-13 1.7.2
2018-04-19 1.7.1
2018-01-03 1.6.0
2017-07-19 1.5.4
2016-07-07 1.4.4
2016-03-04 1.4.0
2015-11-09 1.3.10
2015-08-17 1.3.5
2015-07-07 1.3.4
2015-02-27 1.2.1
2015-01-23 1.1.9
2015-01-05 1.1.8
2014-11-13 1.1.5
2014-10-02 1.1.0
2014-09-18 1.0.1
2014-09-17 1.0.0
2014-08-04 0.9.999
2014-07-10 0.9.9
2014-02-27 0.9.7
2014-01-21 0.9.1
2013-11-27 0.8.0
2013-10-08 0.7.0
2013-08-26 0.6.0
2013-08-20 0.5.8
2013-07-12 0.4.4
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom' (<https://www.dexcom.com>), 'iPro 2' (<http://professional.medtronicdiabetes.com/ipro2-professional-cgm>), Diasend (<https://diasend.com//us>), Libre (<https://www.freestylelibre.us/>) or Carelink (<https://www.medtronicdiabetes.com/products/carelink-personal-diabetes-software>) data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload ("--1" is added to each subject ID automatically for double data entry). cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <tim.b.vigers@gmail.com>
Diff between cgmanalysis versions 2.6.1 dated 2020-03-12 and 2.7 dated 2020-04-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/cgmvariables.R | 41 ++++++++++++++++++++++++----------------- R/cleandata.R | 22 ++++++++++++++++------ man/cgmvariables.Rd | 2 +- 5 files changed, 48 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-24 1.7.7