Title: Create Visuals for Publication
Description: A small set of functions for making visuals for publication in ggplot2. Includes minimalist themes with transparent backgrounds and a suite of tools for building Kaplan-Meier curves with risk tables.
Author: Eric Finnesgard [aut, cre]
Maintainer: Eric Finnesgard <efinite@outlook.com>
Diff between utile.visuals versions 0.2.3 dated 2019-12-01 and 0.2.5 dated 2020-05-01
DESCRIPTION | 14 ++--- MD5 | 13 ++-- NEWS.md | 3 + R/connect.R | 3 - R/geoms.R | 144 ++++++++++++++++++++++++++--------------------------- R/gg.R | 102 ++++++++++++++++++------------------- R/utils.R |only man/ggrisktable.Rd | 88 ++++++++++++++++---------------- 8 files changed, 186 insertions(+), 181 deletions(-)
Title: Build Tables for Publication
Description: A collection of functions to make building customized ready-to-export tables for publication purposes easier and creating summaries of large datasets for review a breeze.
Author: Eric Finnesgard [aut, cre],
Jennifer Grauberger [aut]
Maintainer: Eric Finnesgard <efinite@outlook.com>
Diff between utile.tables versions 0.1.8 dated 2019-12-02 and 0.2.0 dated 2020-05-01
utile.tables-0.1.8/utile.tables/R/build_event_row.R |only utile.tables-0.1.8/utile.tables/R/build_event_table.R |only utile.tables-0.1.8/utile.tables/man/build_event_row.Rd |only utile.tables-0.1.8/utile.tables/man/build_event_row_.Rd |only utile.tables-0.1.8/utile.tables/man/build_event_table.Rd |only utile.tables-0.1.8/utile.tables/man/build_footer.Rd |only utile.tables-0.1.8/utile.tables/man/build_row_.Rd |only utile.tables-0.2.0/utile.tables/DESCRIPTION | 18 utile.tables-0.2.0/utile.tables/MD5 | 35 utile.tables-0.2.0/utile.tables/NAMESPACE | 23 utile.tables-0.2.0/utile.tables/NEWS.md | 46 utile.tables-0.2.0/utile.tables/R/build_model.R |only utile.tables-0.2.0/utile.tables/R/build_row.R | 877 +++++----- utile.tables-0.2.0/utile.tables/R/build_table.R | 671 ++++++- utile.tables-0.2.0/utile.tables/R/utils.R | 462 ----- utile.tables-0.2.0/utile.tables/README.md | 29 utile.tables-0.2.0/utile.tables/man/build_model.Rd |only utile.tables-0.2.0/utile.tables/man/build_model.coxph.Rd |only utile.tables-0.2.0/utile.tables/man/build_row.Rd | 101 - utile.tables-0.2.0/utile.tables/man/build_row.data.frame.Rd |only utile.tables-0.2.0/utile.tables/man/build_row.factor.Rd |only utile.tables-0.2.0/utile.tables/man/build_row.logical.Rd |only utile.tables-0.2.0/utile.tables/man/build_row.numeric.Rd |only utile.tables-0.2.0/utile.tables/man/build_table.Rd | 87 utile.tables-0.2.0/utile.tables/man/build_table.coxph.Rd |only utile.tables-0.2.0/utile.tables/man/build_table.data.frame.Rd |only utile.tables-0.2.0/utile.tables/man/build_table.lm.Rd |only 27 files changed, 1222 insertions(+), 1127 deletions(-)
Title: Algorithmic Fairness Metrics
Description: Offers various metrics of algorithmic fairness. Fairness in machine learning is an emerging topic with the overarching aim to critically assess algorithms (predictive and classification models) whether their results reinforce existing social biases. While unfair algorithms can propagate such biases and offer prediction or classification results with a disparate impact on various sensitive subgroups of populations (defined by sex, gender, ethnicity, religion, income, socioeconomic status, physical or mental disabilities), fair algorithms possess the underlying foundation that these groups should be treated similarly / should have similar outcomes. The fairness R package offers the calculation and comparisons of commonly and less commonly used fairness metrics in population subgroups. These methods are described by Calders and Verwer (2010) <doi:10.1007/s10618-010-0190-x>, Chouldechova (2017) <doi:10.1089/big.2016.0047>, Feldman et al. (2015) <doi:10.1145/2783258.2783311> , Friedler et al. (2018) <doi:10.1145/3287560.3287589> and Zafar et al. (2017) <doi:10.1145/3038912.3052660>. The package also offers convenient visualizations to help understand fairness metrics.
Author: Nikita Kozodoi [aut, cre],
Tibor V. Varga [aut] (<https://orcid.org/0000-0002-2383-699X>)
Maintainer: Nikita Kozodoi <n.kozodoi@icloud.com>
Diff between fairness versions 1.0.1 dated 2019-09-27 and 1.1.0 dated 2020-05-01
DESCRIPTION | 29 - LICENSE | 4 MD5 | 80 +-- NEWS.md | 15 R/acc_parity.R | 56 +- R/dem_parity.R | 34 + R/equal_odds.R | 61 +- R/fairness-package.R | 19 R/fnr_parity.R | 66 ++- R/fpr_parity.R | 62 +- R/mcc_parity.R | 66 +-- R/npv_parity.R | 56 +- R/pred_rate_parity.R | 56 +- R/prop_parity.R | 34 + R/roc_parity.R | 27 - R/spec_parity.R | 56 +- build/vignette.rds |binary inst/doc/fairness.R | 238 +++++------ inst/doc/fairness.Rmd | 198 ++++----- inst/doc/fairness.html | 840 ++++++++++++++++++---------------------- man/acc_parity.Rd | 23 - man/compas.Rd | 6 man/dem_parity.Rd | 25 - man/equal_odds.Rd | 23 - man/fairness.Rd | 20 man/fnr_parity.Rd | 23 - man/fpr_parity.Rd | 23 - man/germancredit.Rd | 6 man/mcc_parity.Rd | 23 - man/npv_parity.Rd | 23 - man/pred_rate_parity.Rd | 23 - man/prop_parity.Rd | 25 - man/roc_parity.Rd | 9 man/spec_parity.Rd | 23 - tests/testthat/test.errors.R | 36 - tests/testthat/test.outputs.R | 42 +- tests/testthat/test.preds-col.R | 20 tests/testthat/test.preds-vec.R | 20 tests/testthat/test.probs-col.R | 22 - tests/testthat/test.probs-vec.R | 22 - vignettes/fairness.Rmd | 198 ++++----- 41 files changed, 1392 insertions(+), 1240 deletions(-)
Title: Counterfactual Decomposition: MC Integration of the G-Formula
Description: Provides a set of functions for counterfactual decomposition (cfdecomp). The functions available in this package decompose differences in an outcome attributable to a mediating variable (or sets of mediating variables) between groups based on counterfactual (causal inference) theory. By using Monte Carlo (MC) integration (simulations based on empirical estimates from multivariable models) we provide added flexibility compared to existing (analytical) approaches, at the cost of computational power or time. The added flexibility means that we can decompose difference between groups in any outcome or and with any mediator (any variable type and distribution). See Sudharsanan & Bijlsma (2019) <doi:10.4054/MPIDR-WP-2019-004> for more information.
Author: Maarten Jacob Bijlsma [aut, cre],
Nikkil Sudharsanan [aut],
Peng Li [ctb]
Maintainer: Maarten Jacob Bijlsma <maarten.bijlsma@gmail.com>
Diff between cfdecomp versions 0.1.0 dated 2020-03-18 and 0.2.0 dated 2020-05-01
DESCRIPTION | 14 +-- MD5 | 34 ++++--- NAMESPACE | 5 - NEWS.md | 11 ++ R/cfd.FUN.R |only R/cfd.example.data.R | 1 R/cfd.mean.R | 41 +++++---- R/cfd.quantile.R | 18 ++-- R/cfd.semipar.quantile.R | 4 R/cluster.resample.R |only README.md | 6 + data/cfd.example.data.rda |binary man/cfd.FUN.Rd |only man/cfd.example.data.Rd | 47 +++++----- man/cfd.mean.Rd | 178 +++++++++++++++++++++------------------- man/cfd.quantile.Rd | 192 ++++++++++++++++++++++---------------------- man/cfd.semipar.mean.Rd | 136 +++++++++++++++---------------- man/cfd.semipar.quantile.Rd | 146 ++++++++++++++++----------------- man/cluster.resample.Rd |only man/conv.mean.Rd | 34 +++---- 20 files changed, 460 insertions(+), 407 deletions(-)
Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.4.13 dated 2020-04-18 and 0.4.14 dated 2020-05-01
DESCRIPTION | 11 MD5 | 69 ++-- NAMESPACE | 4 NEWS.md | 104 +++--- R/Apply.R | 490 ++++++++++++++++--------------- R/Binary.R | 12 R/CompletingMatrices.R | 19 - R/Unary.R | 226 +++++++++++++- R/Utilities.R | 254 ++++++++++++++-- README.md | 4 build/vignette.rds |binary inst/CITATION | 4 inst/doc/applybyname-vignette.html | 4 inst/doc/matsbyname.R | 2 inst/doc/matsbyname.Rmd | 2 inst/doc/matsbyname.html | 76 +--- man/aggregate_byname.Rd |only man/aggregate_to_pref_suff_byname.Rd |only man/binaryapply_byname.Rd | 10 man/cumapply_byname.Rd | 10 man/elementapply_byname.Rd | 2 man/identize_byname.Rd | 11 man/make_pattern.Rd | 2 man/naryapply_byname.Rd | 38 +- man/naryapplylogical_byname.Rd | 10 man/prep_vector_arg.Rd |only man/prepare_.FUNdots.Rd |only man/rename_to_pref_suff_byname.Rd |only man/select_cols_byname.Rd | 2 man/select_rows_byname.Rd | 6 man/setrownames_byname.Rd | 8 man/sort_rows_cols.Rd | 6 man/unaryapply_byname.Rd | 25 - tests/testthat/test_Apply.R | 2 tests/testthat/test_CompletingMatrices.R | 26 + tests/testthat/test_Unary.R | 465 ++++++++++++++--------------- tests/testthat/test_Utilities.R | 433 +++++++++++++++++++++++++++ vignettes/matsbyname.Rmd | 2 38 files changed, 1607 insertions(+), 732 deletions(-)
Title: Interface to Bold Systems API
Description: A programmatic interface to the Web Service methods provided by
Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data.
Functions include methods for searching by sequences by taxonomic names,
ids, collectors, and institutions; as well as a function for searching
for specimens, and downloading trace files.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between bold versions 0.9.0 dated 2019-06-27 and 1.0.0 dated 2020-05-01
DESCRIPTION | 13 LICENSE | 2 MD5 | 129 NEWS.md | 11 R/bold-package.R | 48 R/bold_filter.R | 12 R/bold_identify.R | 27 R/bold_identify_parents.R | 76 R/bold_seq.R | 11 R/bold_seqspec.R | 22 R/bold_specimens.R | 4 R/bold_stats.R | 8 R/bold_tax_id.R | 30 R/bold_tax_name.R | 10 R/bold_trace.R | 4 R/zzz.R | 2 README.md | 125 build/vignette.rds |binary inst/doc/bold.Rmd | 178 inst/doc/bold.html | 1145 man/bold-package.Rd | 33 man/bold_filter.Rd | 4 man/bold_identify.Rd | 42 man/bold_identify_parents.Rd | 64 man/bold_seq.Rd | 87 man/bold_seqspec.Rd | 76 man/bold_specimens.Rd | 42 man/bold_stats.Rd | 48 man/bold_tax_id.Rd | 26 man/bold_tax_name.Rd | 17 man/bold_trace.Rd | 36 man/sequences.Rd | 8 tests/fixtures/bold_filter.yml |10812 +- tests/fixtures/bold_identify_ampersands.yml | 222 tests/fixtures/bold_identify_db_param.yml | 225 tests/fixtures/bold_identify_parents.yml | 366 tests/fixtures/bold_identify_parents_wide.yml | 366 tests/fixtures/bold_identify_parents_wrong_type.yml | 207 tests/fixtures/bold_identify_response_param.yml | 225 tests/fixtures/bold_identify_works.yml | 225 tests/fixtures/bold_seq_works_bin.yml | 167 tests/fixtures/bold_seq_works_taxon.yml | 585 tests/fixtures/bold_seq_works_taxon_response.yml | 585 tests/fixtures/bold_seqspec_one.yml |10890 +- tests/fixtures/bold_seqspec_three.yml |10890 +- tests/fixtures/bold_seqspec_two.yml |10890 +- tests/fixtures/bold_specimens_response.yml |44990 +++++----- tests/fixtures/bold_stats.yml | 25 tests/fixtures/bold_stats_many_taxa.yml | 25 tests/fixtures/bold_stats_response_true.yml | 25 tests/fixtures/bold_tax_id1.yml | 25 tests/fixtures/bold_tax_id2.yml | 25 tests/fixtures/bold_tax_id_datatypes_param_basic.yml | 25 tests/fixtures/bold_tax_id_datatypes_param_geo.yml | 25 tests/fixtures/bold_tax_id_datatypes_param_multiple.yml | 25 tests/fixtures/bold_tax_id_datatypes_param_sequencinglabs.yml | 33 tests/fixtures/bold_tax_id_datatypes_param_stats1.yml | 25 tests/fixtures/bold_tax_id_datatypes_param_stats2.yml | 25 tests/fixtures/bold_tax_id_includetree_param.yml | 50 tests/fixtures/bold_tax_id_multiple_ids.yml | 50 tests/fixtures/bold_tax_name.yml | 150 tests/fixtures/bold_tax_name_fuzzy.yml | 103 tests/testthat/test-bold_tax_id.R | 16 tests/testthat/test-bold_tax_name.R | 38 vignettes/bold.Rmd | 178 vignettes/bold.Rmd.og |only 66 files changed, 53950 insertions(+), 40903 deletions(-)
Title: Analysis of Longitudinal Data with Irregular Observation Times
Description: Analysis of longitudinal data for which the times of observation are random variables that are potentially associated with the outcome process. The package includes inverse-intensity weighting methods (Lin H, Scharfstein DO, Rosenheck RA (2004) <doi:10.1111/j.1467-9868.2004.b5543.x>) and multiple outputation (Pullenayegum EM (2016) <doi:10.1002/sim.6829>).
Author: Eleanor Pullenayegum
Maintainer: Eleanor Pullenayegum <eleanor.pullenayegum@sickkids.ca>
Diff between IrregLong versions 0.2.0 dated 2020-01-24 and 0.3.0 dated 2020-05-01
DESCRIPTION | 10 - MD5 | 19 +- NAMESPACE | 6 R/IIWcode.R | 201 ++++++++++++++++++++-- build/vignette.rds |binary inst/doc/Irreglong-vignette.R | 30 +-- inst/doc/Irreglong-vignette.Rmd | 47 ++--- inst/doc/Irreglong-vignette.html | 343 ++++++++++++++++++--------------------- man/Liang.Rd | 13 + man/extent.of.irregularity.Rd |only vignettes/Irreglong-vignette.Rmd | 47 ++--- 11 files changed, 442 insertions(+), 274 deletions(-)
Title: Manipulate Dates, DateTimes and Times
Description: Manipulates date ('Date'), datetime ('POSIXct') and
time ('hms') vectors. Date/times are considered discrete and are
floored whenever encountered. Times are wrapped and time zones are
maintained unless explicitly altered by the user.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between dttr2 versions 0.1.0 dated 2020-03-04 and 0.2.0 dated 2020-05-01
DESCRIPTION | 10 +++--- MD5 | 57 ++++++++++++++++++++---------------- NAMESPACE | 12 +++++++ NEWS.md | 16 ++++++++-- R/complete.R | 6 +-- R/date-add-time.R |only R/date.R | 39 ++++++++++++++++++++++++ R/day.R | 4 +- R/diff.R |only R/hour.R | 2 - R/minute.R | 4 +- R/month.R | 4 +- R/season.R | 53 +++++++++++++++++++++------------ R/second.R | 4 +- R/set.R | 14 ++++++++ R/time.R | 33 ++++++++++++++++++++ R/wday.R |only R/year.R | 4 +- README.md | 7 +--- man/NA_Date_.Rd | 4 +- man/NA_POSIXct_.Rd | 4 +- man/NA_hms_.Rd | 4 +- man/dtt_date.Rd | 30 ++++++++++++++++++ man/dtt_date_add_time.Rd |only man/dtt_diff.Rd |only man/dtt_season.Rd | 12 +++++-- man/dtt_time.Rd | 12 ++++++- man/dtt_wday.Rd |only tests/testthat/test-date-add-time.R |only tests/testthat/test-date.R | 17 ++++++++++ tests/testthat/test-diff.R |only tests/testthat/test-season.R | 30 ++++++++++++------ tests/testthat/test-time.R | 17 ++++++++++ tests/testthat/test-wday.R |only 34 files changed, 311 insertions(+), 88 deletions(-)
More information about bayescopulareg at CRAN
Permanent link
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.2.4 dated 2020-02-19 and 1.2.5 dated 2020-05-01
DESCRIPTION | 12 - MD5 | 22 +- NEWS.md | 7 R/BinaryYScatterPlot.R | 3 R/DiscreteDistribution.R | 2 R/GainCurve.R | 3 R/LogLogPlot.R | 2 R/ScatterHist.R | 2 R/sharedFunctions.R | 24 ++ build/vignette.rds |binary inst/doc/WVPlots_concept.html | 6 inst/doc/WVPlots_examples.html | 443 ++++++++++++++++++++--------------------- 12 files changed, 278 insertions(+), 248 deletions(-)
Title: 'BaseX' Client
Description: 'BaseX' <http://basex.org> is a XML database engine and a compliant 'XQuery 3.1' processor with full support of 'W3C Update Facility'. This package is a full client-implementation of the client/server protocol for 'BaseX' and provides functionalities to create, manipulate and query on XML-data.
Author: Ben Engbers [aut, cre]
Maintainer: Ben Engbers <Ben.Engbers@Be-Logical.nl>
Diff between RBaseX versions 0.2.4 dated 2020-03-11 and 0.3.0 dated 2020-05-01
RBaseX-0.2.4/RBaseX/R/result2matrix.R |only RBaseX-0.2.4/RBaseX/man/result2matrix.Rd |only RBaseX-0.2.4/RBaseX/tests/testthat/test_QueryClass.R |only RBaseX-0.2.4/RBaseX/tests/testthat/test_RbaseX.R |only RBaseX-0.2.4/RBaseX/tests/testthat/test_Utility.R |only RBaseX-0.2.4/RBaseX/tests/testthat/test_Wrappers.R |only RBaseX-0.2.4/RBaseX/tests/testthat/test_first.R |only RBaseX-0.3.0/RBaseX/DESCRIPTION | 13 - RBaseX-0.3.0/RBaseX/MD5 | 76 ++++---- RBaseX-0.3.0/RBaseX/NAMESPACE | 2 RBaseX-0.3.0/RBaseX/R/Add.R | 3 RBaseX-0.3.0/RBaseX/R/Bind.R | 27 ++ RBaseX-0.3.0/RBaseX/R/Close.R | 2 RBaseX-0.3.0/RBaseX/R/Context.R | 1 RBaseX-0.3.0/RBaseX/R/Create.R | 11 - RBaseX-0.3.0/RBaseX/R/QueryClass.R | 109 +++++------- RBaseX-0.3.0/RBaseX/R/RBaseX.R | 1 RBaseX-0.3.0/RBaseX/R/RbaseXClient.R | 13 - RBaseX-0.3.0/RBaseX/R/Replace.R | 2 RBaseX-0.3.0/RBaseX/R/RestoreIntercept.R | 2 RBaseX-0.3.0/RBaseX/R/SetIntercept.R | 6 RBaseX-0.3.0/RBaseX/R/SocketClass.R | 145 +++++++++++----- RBaseX-0.3.0/RBaseX/R/Store.R | 1 RBaseX-0.3.0/RBaseX/R/input_to_raw.R | 10 - RBaseX-0.3.0/RBaseX/R/result2frame.R | 52 +++++ RBaseX-0.3.0/RBaseX/R/result2tibble.R | 32 ++- RBaseX-0.3.0/RBaseX/man/Add.Rd | 3 RBaseX-0.3.0/RBaseX/man/Bind.Rd | 27 ++ RBaseX-0.3.0/RBaseX/man/Close.Rd | 3 RBaseX-0.3.0/RBaseX/man/Context.Rd | 1 RBaseX-0.3.0/RBaseX/man/Create.Rd | 11 - RBaseX-0.3.0/RBaseX/man/QueryClass.Rd | 12 + RBaseX-0.3.0/RBaseX/man/RBaseX.Rd | 14 + RBaseX-0.3.0/RBaseX/man/Replace.Rd | 3 RBaseX-0.3.0/RBaseX/man/RestoreIntercept.Rd | 3 RBaseX-0.3.0/RBaseX/man/SetIntercept.Rd | 3 RBaseX-0.3.0/RBaseX/man/SocketClass.Rd | 42 +++- RBaseX-0.3.0/RBaseX/man/Store.Rd | 1 RBaseX-0.3.0/RBaseX/man/result2frame.Rd | 10 - RBaseX-0.3.0/RBaseX/man/result2tibble.Rd | 10 - RBaseX-0.3.0/RBaseX/tests/testthat/test_01_first.R |only RBaseX-0.3.0/RBaseX/tests/testthat/test_02_RbaseX.R |only RBaseX-0.3.0/RBaseX/tests/testthat/test_03_QueryClass.R |only RBaseX-0.3.0/RBaseX/tests/testthat/test_04_Utility.R |only RBaseX-0.3.0/RBaseX/tests/testthat/test_05_Wrappers.R |only 45 files changed, 448 insertions(+), 203 deletions(-)
Title: Read, Manipulate, and Write Profiler Data
Description: Defines a data structure for profiler data, and methods to read and
write from the 'Rprof' and 'pprof' file formats.
Author: Kirill Müller [aut, cre],
R Consortium [fnd]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between profile versions 1.0 dated 2018-01-05 and 1.0.1 dated 2020-05-01
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 7 +++++-- R/rprof-read.R | 6 ++++-- README.md | 2 +- man/read_rprof.Rd | 6 ++++-- 6 files changed, 24 insertions(+), 17 deletions(-)
Title: Hierarchical Shrinkage Stan Models for Biomarker Selection
Description: Linear and logistic regression models penalized with hierarchical
shrinkage priors for selection of biomarkers (or more general variable
selection), which can be fitted using Stan (Carpenter et al. (2017)
<doi:10.18637/jss.v076.i01>). It implements the horseshoe and regularized
horseshoe priors (Piironen and Vehtari (2017) <doi:10.1214/17-EJS1337SI>),
as well as the projection predictive selection approach to recover a sparse
set of predictive biomarkers (Piironen, Paasiniemi and Vehtari (2018)
<arXiv:1810.02406>).
Author: Marco Colombo [aut, cre] (<https://orcid.org/0000-0001-6672-0623>),
Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>),
Athina Spiliopoulou [ctb] (<https://orcid.org/0000-0002-5929-6585>)
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between hsstan versions 0.6 dated 2019-09-22 and 0.7 dated 2020-05-01
hsstan-0.6/hsstan/src/Makevars.win |only hsstan-0.6/hsstan/src/stanExports_base.cc |only hsstan-0.6/hsstan/src/stanExports_base.h |only hsstan-0.6/hsstan/src/stanExports_base_logit.cc |only hsstan-0.6/hsstan/src/stanExports_base_logit.h |only hsstan-0.6/hsstan/src/stanExports_hs.cc |only hsstan-0.6/hsstan/src/stanExports_hs.h |only hsstan-0.6/hsstan/src/stanExports_hs_logit.cc |only hsstan-0.6/hsstan/src/stanExports_hs_logit.h |only hsstan-0.7/hsstan/DESCRIPTION | 12 +-- hsstan-0.7/hsstan/MD5 | 67 +++++++++------------ hsstan-0.7/hsstan/NAMESPACE | 1 hsstan-0.7/hsstan/NEWS.md | 28 ++++++++ hsstan-0.7/hsstan/R/misc.R | 2 hsstan-0.7/hsstan/R/postestimation.R | 18 +++-- hsstan-0.7/hsstan/R/projection.R | 2 hsstan-0.7/hsstan/R/stan.R | 8 +- hsstan-0.7/hsstan/R/stanmodels.R | 6 - hsstan-0.7/hsstan/R/summaries.R | 2 hsstan-0.7/hsstan/README.md | 9 ++ hsstan-0.7/hsstan/configure |only hsstan-0.7/hsstan/configure.win |only hsstan-0.7/hsstan/inst/stan/base.stan | 5 - hsstan-0.7/hsstan/inst/stan/base_logit.stan | 5 - hsstan-0.7/hsstan/inst/stan/chunks/hs.fun | 20 ------ hsstan-0.7/hsstan/inst/stan/hs.stan | 29 ++++----- hsstan-0.7/hsstan/inst/stan/hs_logit.stan | 29 ++++----- hsstan-0.7/hsstan/man/bayes_R2.hsstan.Rd | 1 hsstan-0.7/hsstan/man/diabetes.Rd | 4 - hsstan-0.7/hsstan/man/hsstan.Rd | 26 ++++++-- hsstan-0.7/hsstan/man/kfold.hsstan.Rd | 11 ++- hsstan-0.7/hsstan/man/loo.hsstan.Rd | 1 hsstan-0.7/hsstan/man/plot.projsel.Rd | 14 +++- hsstan-0.7/hsstan/man/posterior_interval.hsstan.Rd | 3 hsstan-0.7/hsstan/man/posterior_linpred.hsstan.Rd | 3 hsstan-0.7/hsstan/man/posterior_performance.Rd | 10 ++- hsstan-0.7/hsstan/man/posterior_predict.hsstan.Rd | 3 hsstan-0.7/hsstan/man/projsel.Rd | 1 hsstan-0.7/hsstan/man/summary.hsstan.Rd | 12 +++ hsstan-0.7/hsstan/src/Makevars | 2 40 files changed, 191 insertions(+), 143 deletions(-)
Title: Analyzing Gastric Emptying from MRI or Scintigraphy
Description: Fits gastric emptying time series from MRI or scintigraphic measurements
using nonlinear mixed-model population fits with 'nlme' and Bayesian methods with
Stan; computes derived parameters such as t50 and AUC.
Author: Dieter Menne [aut, cre]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between gastempt versions 0.4.4 dated 2019-03-06 and 0.5.0 dated 2020-05-01
gastempt-0.4.4/gastempt/R/gastempt-internal.R |only gastempt-0.4.4/gastempt/inst/shiny/rsconnect |only gastempt-0.4.4/gastempt/src/init.cpp |only gastempt-0.4.4/gastempt/src/stan_files |only gastempt-0.5.0/gastempt/DESCRIPTION | 20 - gastempt-0.5.0/gastempt/MD5 | 66 ++-- gastempt-0.5.0/gastempt/NAMESPACE | 1 gastempt-0.5.0/gastempt/R/fitparams.R | 6 gastempt-0.5.0/gastempt/R/simulate_gastempt.R | 4 gastempt-0.5.0/gastempt/R/stan_gastempt.R | 6 gastempt-0.5.0/gastempt/R/stanmodels.R | 65 +--- gastempt-0.5.0/gastempt/README.md | 28 + gastempt-0.5.0/gastempt/build/vignette.rds |binary gastempt-0.5.0/gastempt/configure |only gastempt-0.5.0/gastempt/configure.win |only gastempt-0.5.0/gastempt/inst/doc/gastempt.html | 37 +- gastempt-0.5.0/gastempt/inst/include/stan_meta_header.hpp |only gastempt-0.5.0/gastempt/inst/stan |only gastempt-0.5.0/gastempt/man/gastemptfunc.Rd | 183 +++++------- gastempt-0.5.0/gastempt/man/nlme_gastempt.Rd | 152 ++++----- gastempt-0.5.0/gastempt/man/plot.stan_gastempt.Rd | 40 +- gastempt-0.5.0/gastempt/man/simulate_gastempt.Rd | 149 +++++---- gastempt-0.5.0/gastempt/man/stan_gastempt.Rd | 143 ++++----- gastempt-0.5.0/gastempt/man/stan_model_names.Rd | 46 +-- gastempt-0.5.0/gastempt/man/t50.Rd | 38 +- gastempt-0.5.0/gastempt/src/Makevars | 12 gastempt-0.5.0/gastempt/src/Makevars.win | 16 - gastempt-0.5.0/gastempt/src/RcppExports.cpp |only gastempt-0.5.0/gastempt/src/stanExports_linexp_gastro_1b.cc |only gastempt-0.5.0/gastempt/src/stanExports_linexp_gastro_1b.h |only gastempt-0.5.0/gastempt/src/stanExports_linexp_gastro_2b.cc |only gastempt-0.5.0/gastempt/src/stanExports_linexp_gastro_2b.h |only gastempt-0.5.0/gastempt/src/stanExports_powexp_gastro_1b.cc |only gastempt-0.5.0/gastempt/src/stanExports_powexp_gastro_1b.h |only gastempt-0.5.0/gastempt/src/stanExports_powexp_gastro_2c.cc |only gastempt-0.5.0/gastempt/src/stanExports_powexp_gastro_2c.h |only gastempt-0.5.0/gastempt/tests/testthat/test-stan.R | 30 - 37 files changed, 534 insertions(+), 508 deletions(-)
Title: Preprocess Data and Get Better Insights from Machine Learning
Models
Description: The main focus is on preprocessing and data visualization of machine learning models performances.
Some functions allow to fill in gaps in time series using linear interpolation on panel data, some functions
permit to draw lift effect and lift curve in order to benchmark machine learning models or you can even find
the optimal number of clusters in agglomerative clustering algorithm.
Author: Simon Corde [aut, cre]
Maintainer: Simon Corde <simon.corde@hotmail.fr>
Diff between helda versions 1.0.1 dated 2020-03-14 and 1.1.0 dated 2020-05-01
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++++++------------ NEWS.md | 4 ++++ README.md | 32 +++++++++++++++++++++++++------- data/titanic_testing.RData |binary data/titanic_training.RData |binary data/titanic_validation.RData |binary data/world_countries_pop.RData |binary man/figures/README-lift_curve-1.png |binary man/titanic_testing.Rd | 6 ++---- man/titanic_training.Rd | 6 ++---- man/titanic_validation.Rd | 6 ++---- man/world_countries_pop.Rd | 6 ++---- tests/testthat/lift_curve_test.Rda |only tests/testthat/lift_curve_test_v3.Rda |only tests/testthat/lift_curve_test_v4.Rda |only tests/testthat/lift_effect_test.Rda |only tests/testthat/lift_effect_test_v3.Rda |only tests/testthat/lift_effect_test_v4.Rda |only tests/testthat/test-lift_curve.R |only tests/testthat/test-lift_effect.R |only 21 files changed, 60 insertions(+), 38 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-01 2.0
2014-11-29 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 0.2.2
2019-07-13 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-16 0.1.0
Title: Preprocessing Tools to Create Design Matrices
Description: An extensible framework to create and preprocess
design matrices. Recipes consist of one or more data manipulation
and analysis "steps". Statistical parameters for the steps can
be estimated from an initial data set and then applied to
other data sets. The resulting design matrices can then be used
as inputs into statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.11 dated 2020-04-30 and 0.1.12 dated 2020-05-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 10 ++++++++-- R/misc.R | 7 ++++--- R/zzz.R | 36 ++++++++++++++++++++++++++---------- 5 files changed, 45 insertions(+), 22 deletions(-)
Title: QTL Genome-Wide Composite Interval Mapping with Graphical User
Interface
Description: Conduct multiple quantitative trait loci (QTL) mapping under the framework of random-QTL-effect linear mixed model. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve are viewed as potential QTL, all the effects of the potential QTL are included in a multi-QTL model, their effects are estimated by empirical Bayes in doubled haploid population or by adaptive lasso in F2 population, and true QTL are identified by likelihood radio test. See Wen et al. (2018) <doi:10.1093/bib/bby058>.
Author: Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between QTL.gCIMapping.GUI versions 2.0 dated 2019-11-11 and 2.1 dated 2020-05-01
QTL.gCIMapping.GUI-2.0/QTL.gCIMapping.GUI/inst/extdata/GCIM_Format_DH.txt |only QTL.gCIMapping.GUI-2.0/QTL.gCIMapping.GUI/inst/extdata/GCIM_Format_F2.txt |only QTL.gCIMapping.GUI-2.0/QTL.gCIMapping.GUI/inst/extdata/ICIM_Cov.txt |only QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/DESCRIPTION | 10 QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/MD5 | 25 -- QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/NAMESPACE | 6 QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/R/QTL.gCIMapping.GUI.R | 116 ++++++--- QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/R/WenF.r | 123 +++++++++- QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/inst/doc/Instruction.pdf |binary QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/QTL.gCIMapping.GUI.Rd | 12 QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/WangF.Rd | 11 QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/WangS.Rd | 18 - QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/WenF.Rd | 11 QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/WenS.Rd | 33 +- QTL.gCIMapping.GUI-2.1/QTL.gCIMapping.GUI/man/markerinsert.Rd | 12 15 files changed, 285 insertions(+), 92 deletions(-)
More information about QTL.gCIMapping.GUI at CRAN
Permanent link
Title: QTL Genome-Wide Composite Interval Mapping
Description: Conduct multiple quantitative trait loci (QTL) mapping under the framework of random-QTL-effect linear mixed model. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve are viewed as potential QTL, all the effects of the potential QTL are included in a multi-QTL model, their effects are estimated by empirical Bayes in doubled haploid population or by adaptive lasso in F2 population, and true QTL are identified by likelihood radio test. See Wen et al. (2018) <doi:10.1093/bib/bby058>.
Author: Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between QTL.gCIMapping versions 3.2 dated 2019-11-11 and 3.3 dated 2020-05-01
QTL.gCIMapping-3.2/QTL.gCIMapping/inst/extdata/GCIM_Format_DH.txt |only QTL.gCIMapping-3.2/QTL.gCIMapping/inst/extdata/GCIM_Format_F2.txt |only QTL.gCIMapping-3.2/QTL.gCIMapping/inst/extdata/ICIM_Cov.txt |only QTL.gCIMapping-3.3/QTL.gCIMapping/DESCRIPTION | 10 QTL.gCIMapping-3.3/QTL.gCIMapping/MD5 | 29 +- QTL.gCIMapping-3.3/QTL.gCIMapping/NAMESPACE | 4 QTL.gCIMapping-3.3/QTL.gCIMapping/R/QTL.gCIMapping.R | 4 QTL.gCIMapping-3.3/QTL.gCIMapping/R/WenF.r | 125 +++++++++- QTL.gCIMapping-3.3/QTL.gCIMapping/inst/doc/instruction.pdf |binary QTL.gCIMapping-3.3/QTL.gCIMapping/man/Dodata.Rd | 6 QTL.gCIMapping-3.3/QTL.gCIMapping/man/QTL.gCIMapping.Rd | 11 QTL.gCIMapping-3.3/QTL.gCIMapping/man/Readdata.Rd | 4 QTL.gCIMapping-3.3/QTL.gCIMapping/man/WangF.Rd | 11 QTL.gCIMapping-3.3/QTL.gCIMapping/man/WangS.Rd | 21 + QTL.gCIMapping-3.3/QTL.gCIMapping/man/WenF.Rd | 12 QTL.gCIMapping-3.3/QTL.gCIMapping/man/WenS.Rd | 34 +- QTL.gCIMapping-3.3/QTL.gCIMapping/man/markerinsert.Rd | 2 17 files changed, 215 insertions(+), 58 deletions(-)
More information about QTL.gCIMapping at CRAN
Permanent link
Title: Rao-Scott Cochran-Armitage by Slices Trend Test
Description: Performs the Rao-Scott Cochran-Armitage by Slices trend test (RSCABS) used
in analysis of histopathological endpoints, built to be used with either a GUI or by a
command line. The RSCABS method is detailed in "Statistical analysis of
histopathological endpoints" by John Green et. al. (2014) <doi:10.1002/etc.2530>.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between RSCABS versions 0.9.4 dated 2020-01-13 and 0.9.5 dated 2020-05-01
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 4 ++-- R/zzz.r | 4 ++-- build/vignette.rds |binary inst/doc/RSCABS.pdf |binary 6 files changed, 15 insertions(+), 15 deletions(-)
Title: Tidy Output from Regular Expression Matching
Description: Wrappers on 'regexpr' and 'gregexpr' to return the match
results in tidy data frames.
Author: Gábor Csárdi [aut, cre],
Matthew Lincoln [ctb]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rematch2 versions 2.1.1 dated 2020-03-28 and 2.1.2 dated 2020-05-01
rematch2-2.1.1/rematch2/man/rematch2.Rd |only rematch2-2.1.2/rematch2/DESCRIPTION | 8 ++-- rematch2-2.1.2/rematch2/MD5 | 20 +++++----- rematch2-2.1.2/rematch2/NAMESPACE | 1 rematch2-2.1.2/rematch2/NEWS.md | 5 ++ rematch2-2.1.2/rematch2/R/exec.R | 24 ++++++------ rematch2-2.1.2/rematch2/R/package.R | 6 +-- rematch2-2.1.2/rematch2/man/rematch2-package.Rd |only rematch2-2.1.2/rematch2/tests/testthat/helper.R | 14 ++++++- rematch2-2.1.2/rematch2/tests/testthat/test-exec-all.R | 19 ++++----- rematch2-2.1.2/rematch2/tests/testthat/test-exec.R | 33 +++++++---------- rematch2-2.1.2/rematch2/tests/testthat/test-indexing.R | 17 +++----- 12 files changed, 77 insertions(+), 70 deletions(-)
Title: Simulating from the Polya Posterior
Description: Simulate via Markov chain Monte Carlo (hit-and-run algorithm)
a Dirichlet distribution conditioned to satisfy a finite set of linear
equality and inequality constraints (hence to lie in a convex polytope
that is a subset of the unit simplex).
Author: Glen Meeden <glen@stat.umn.edu> and Radu Lazar
<lazar@stat.umn.edu> and Charles J. Geyer <charlie@stat.umn.edu>
Maintainer: Glen Meeden <glen@stat.umn.edu>
Diff between polyapost versions 1.5 dated 2017-06-12 and 1.6 dated 2020-05-01
DESCRIPTION | 10 +++++----- MD5 | 35 ++++++++++++++++++----------------- build/partial.rdb |only build/vignette.rds |binary inst/doc/pp1.R | 1 - inst/doc/pp1.Rnw | 2 +- inst/doc/pp1.pdf |binary man/constrppmn.Rd | 46 ++++++++++++++++++++++++---------------------- man/constrppprob.Rd | 42 +++++++++++++++++++++--------------------- man/feasible.Rd | 40 +++++++++++++++++++++------------------- man/hitrun.Rd | 11 ++++++----- man/polyap.Rd | 16 +++++++--------- man/wtpolyap.Rd | 12 ++++++------ src/cwpolya.c | 4 +++- src/hitrun.c | 4 ++++ src/means.c | 4 ++++ src/probvect.c | 3 +++ vignettes/pp1.Rnw | 2 +- vignettes/ref.bib | 9 +++++---- 19 files changed, 129 insertions(+), 112 deletions(-)
Title: An R Wrapper for the 'OpenTripPlanner' REST API
Description: A wrapper for the 'OpenTripPlanner' <http://www.opentripplanner.org/>
REST API. Queries are submitted to the relevant 'OpenTripPlanner' API resource, the response
is parsed and useful R objects are returned.
Author: Marcus Young [aut, cre]
Maintainer: Marcus Young <M.A.Young@soton.ac.uk>
Diff between otpr versions 0.3.0 dated 2020-01-31 and 0.4.0 dated 2020-05-01
otpr-0.3.0/otpr/man/figures/unnamed-chunk-7-1.png |only otpr-0.4.0/otpr/DESCRIPTION | 10 otpr-0.4.0/otpr/MD5 | 27 +- otpr-0.4.0/otpr/R/otp-connect.R | 82 ++++-- otpr-0.4.0/otpr/R/otp_get_distance.R | 78 +++--- otpr-0.4.0/otpr/R/otp_get_times.R | 264 ++++++++++++---------- otpr-0.4.0/otpr/R/otpr_get_isochrone.R | 10 otpr-0.4.0/otpr/R/utility_functions.R | 8 otpr-0.4.0/otpr/README.md | 117 +++++++-- otpr-0.4.0/otpr/inst/CITATION | 4 otpr-0.4.0/otpr/man/figures/unnamed-chunk-8-1.png |only otpr-0.4.0/otpr/man/otp_connect.Rd | 19 + otpr-0.4.0/otpr/man/otp_from_epoch.Rd |only otpr-0.4.0/otpr/man/otp_get_isochrone.Rd | 22 + otpr-0.4.0/otpr/man/otp_get_times.Rd | 21 + otpr-0.4.0/otpr/tests/testthat/test-otp_connect.R | 33 +- 16 files changed, 428 insertions(+), 267 deletions(-)
Title: Multinomial Processing Tree Models
Description: Fitting and testing multinomial processing tree (MPT) models, a
class of nonlinear models for categorical data. The parameters are the
link probabilities of a tree-like graph and represent the latent cognitive
processing steps executed to arrive at observable response categories
(Batchelder & Riefer, 1999 <doi:10.3758/bf03210812>; Erdfelder et al., 2009
<doi:10.1027/0044-3409.217.3.108>; Riefer & Batchelder, 1988
<doi:10.1037/0033-295x.95.3.318>).
Author: Florian Wickelmaier [aut, cre],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between mpt versions 0.6-1 dated 2019-10-08 and 0.6-2 dated 2020-05-01
ChangeLog | 10 ++++- DESCRIPTION | 10 ++--- MD5 | 22 ++++++------ build/partial.rdb |binary data/proact.rda |binary data/recogROC.rda |binary data/retroact.rda |binary data/selectiontask.rda |binary inst/CITATION | 6 ++- man/prospecMemory.Rd | 2 - man/recogROC.Rd | 85 ++++++++++++++++++++++++++++++++++--------------- man/simulate.mpt.Rd | 2 - 12 files changed, 90 insertions(+), 47 deletions(-)
Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.1.8 dated 2020-01-09 and 0.1.9 dated 2020-05-01
DESCRIPTION | 10 +-- MD5 | 24 ++++---- NAMESPACE | 2 NEWS | 73 +++++++++++++------------ R/waerden.R |only inst/benchmarks/row_waerden.R |only man/fvar.Rd | 6 -- man/ttest.Rd | 24 ++------ man/waerden.Rd |only man/wilcoxon.Rd | 58 +++++++++++++++---- tests/testthat/test-col-versions.R | 4 + tests/testthat/test-correct-waerden.R |only tests/testthat/test-parameters-main-errors.R | 13 ++++ tests/testthat/test-parameters-special-cases.R | 16 +++++ tests/testthat/test-result-rownames.R | 5 + 15 files changed, 154 insertions(+), 81 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (2019) <doi: 10.1123/jmpb.2018-0063>, van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014>, and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format and has either no header or a two column header. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Joan Capdevila Pujol [ctb],
Jairo H Migueles [ctb],
Matthew R Patterson [ctb],
Dan Jackson [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.11-0 dated 2019-12-04 and 2.0-0 dated 2020-05-01
GGIR-1.11-0/GGIR/tests/testthat/output_test |only GGIR-2.0-0/GGIR/DESCRIPTION | 16 GGIR-2.0-0/GGIR/MD5 | 205 +- GGIR-2.0-0/GGIR/NAMESPACE | 7 GGIR-2.0-0/GGIR/R/applyExtFunction.R |only GGIR-2.0-0/GGIR/R/check_myfun.R |only GGIR-2.0-0/GGIR/R/createConfigFile.R | 10 GGIR-2.0-0/GGIR/R/create_test_sleeplog_csv.R | 7 GGIR-2.0-0/GGIR/R/g.IVIS.R | 2 GGIR-2.0-0/GGIR/R/g.analyse.R | 41 GGIR-2.0-0/GGIR/R/g.analyse.avday.R | 2 GGIR-2.0-0/GGIR/R/g.analyse.perday.R | 79 GGIR-2.0-0/GGIR/R/g.analyse.perfile.R | 10 GGIR-2.0-0/GGIR/R/g.calibrate.R | 21 GGIR-2.0-0/GGIR/R/g.create.sp.mat.R | 14 GGIR-2.0-0/GGIR/R/g.cwaread.R | 223 +- GGIR-2.0-0/GGIR/R/g.detecmidnight.R | 6 GGIR-2.0-0/GGIR/R/g.dotorcomma.R | 19 GGIR-2.0-0/GGIR/R/g.extractheadervars.R | 34 GGIR-2.0-0/GGIR/R/g.getM5L5.R | 8 GGIR-2.0-0/GGIR/R/g.getbout.R | 204 +- GGIR-2.0-0/GGIR/R/g.getidfromheaderobject.R | 17 GGIR-2.0-0/GGIR/R/g.getmeta.R | 268 +-- GGIR-2.0-0/GGIR/R/g.getstarttime.R | 2 GGIR-2.0-0/GGIR/R/g.impute.R | 8 GGIR-2.0-0/GGIR/R/g.inspectfile.R | 20 GGIR-2.0-0/GGIR/R/g.loadlog.R | 127 - GGIR-2.0-0/GGIR/R/g.part1.R | 31 GGIR-2.0-0/GGIR/R/g.part2.R | 223 +- GGIR-2.0-0/GGIR/R/g.part3.R | 30 GGIR-2.0-0/GGIR/R/g.part4.R | 322 ++- GGIR-2.0-0/GGIR/R/g.part5.R | 848 ++++----- GGIR-2.0-0/GGIR/R/g.part5.addfirstwake.R |only GGIR-2.0-0/GGIR/R/g.part5.addsib.R |only GGIR-2.0-0/GGIR/R/g.part5.definedays.R |only GGIR-2.0-0/GGIR/R/g.part5.fixmissingnight.R |only GGIR-2.0-0/GGIR/R/g.part5.onsetwaketiming.R |only GGIR-2.0-0/GGIR/R/g.part5.savetimeseries.R |only GGIR-2.0-0/GGIR/R/g.part5.wakesleepwindows.R |only GGIR-2.0-0/GGIR/R/g.plot.R | 7 GGIR-2.0-0/GGIR/R/g.plot5.R | 448 ++--- GGIR-2.0-0/GGIR/R/g.readaccfile.R | 14 GGIR-2.0-0/GGIR/R/g.report.part2.R | 70 GGIR-2.0-0/GGIR/R/g.report.part4.R | 259 +-- GGIR-2.0-0/GGIR/R/g.report.part5.R | 292 +-- GGIR-2.0-0/GGIR/R/g.shell.GGIR.R | 56 GGIR-2.0-0/GGIR/R/g.sib.det.R | 187 +- GGIR-2.0-0/GGIR/R/g.sib.plot.R | 46 GGIR-2.0-0/GGIR/R/g.sib.sum.R | 8 GGIR-2.0-0/GGIR/R/g.wavread.R | 6 GGIR-2.0-0/GGIR/R/get_nw_clip_block_params.R |only GGIR-2.0-0/GGIR/R/get_starttime_weekday_meantemp_truncdata.R |only GGIR-2.0-0/GGIR/R/getfolderstructure.R | 22 GGIR-2.0-0/GGIR/R/identify_level.R | 96 - GGIR-2.0-0/GGIR/R/is_this_a_dst_night.R | 4 GGIR-2.0-0/GGIR/R/isfilelist.R | 1 GGIR-2.0-0/GGIR/R/read.myacc.csv.R | 5 GGIR-2.0-0/GGIR/README.md | 13 GGIR-2.0-0/GGIR/build/vignette.rds |binary GGIR-2.0-0/GGIR/inst/NEWS.Rd | 47 GGIR-2.0-0/GGIR/inst/doc/ExternalFunction.R |only GGIR-2.0-0/GGIR/inst/doc/ExternalFunction.Rmd |only GGIR-2.0-0/GGIR/inst/doc/ExternalFunction.pdf |only GGIR-2.0-0/GGIR/inst/doc/GGIR.R | 21 GGIR-2.0-0/GGIR/inst/doc/GGIR.Rmd | 473 ++++- GGIR-2.0-0/GGIR/inst/doc/GGIR.html | 863 +++++++--- GGIR-2.0-0/GGIR/man/GGIR-package.Rd | 93 - GGIR-2.0-0/GGIR/man/applyExtFunction.Rd |only GGIR-2.0-0/GGIR/man/check_myfun.Rd |only GGIR-2.0-0/GGIR/man/g.analyse.Rd | 136 - GGIR-2.0-0/GGIR/man/g.analyse.perday.Rd | 15 GGIR-2.0-0/GGIR/man/g.analyse.perfile.Rd | 8 GGIR-2.0-0/GGIR/man/g.calibrate.Rd | 7 GGIR-2.0-0/GGIR/man/g.cwaread.Rd | 2 GGIR-2.0-0/GGIR/man/g.detecmidnight.Rd | 5 GGIR-2.0-0/GGIR/man/g.dotorcomma.Rd | 2 GGIR-2.0-0/GGIR/man/g.extractheadervars.Rd | 2 GGIR-2.0-0/GGIR/man/g.getmeta.Rd | 9 GGIR-2.0-0/GGIR/man/g.impute.Rd | 5 GGIR-2.0-0/GGIR/man/g.inspectfile.Rd | 2 GGIR-2.0-0/GGIR/man/g.part1.Rd | 14 GGIR-2.0-0/GGIR/man/g.part2.Rd | 7 GGIR-2.0-0/GGIR/man/g.part3.Rd | 12 GGIR-2.0-0/GGIR/man/g.part4.Rd | 152 - GGIR-2.0-0/GGIR/man/g.part5.Rd | 122 - GGIR-2.0-0/GGIR/man/g.part5.addfirstwake.Rd |only GGIR-2.0-0/GGIR/man/g.part5.addsib.Rd |only GGIR-2.0-0/GGIR/man/g.part5.definedays.Rd |only GGIR-2.0-0/GGIR/man/g.part5.fixmissingnight.Rd |only GGIR-2.0-0/GGIR/man/g.part5.ontsetwaketiming.Rd |only GGIR-2.0-0/GGIR/man/g.part5.savetimeseries.Rd |only GGIR-2.0-0/GGIR/man/g.part5.wakesleepwindows.Rd |only GGIR-2.0-0/GGIR/man/g.readaccfile.Rd | 2 GGIR-2.0-0/GGIR/man/g.report.part4.Rd | 9 GGIR-2.0-0/GGIR/man/g.report.part5.Rd | 31 GGIR-2.0-0/GGIR/man/g.shell.GGIR.Rd | 7 GGIR-2.0-0/GGIR/man/g.sib.det.Rd | 11 GGIR-2.0-0/GGIR/man/g.sib.plot.Rd | 3 GGIR-2.0-0/GGIR/man/g.sib.sum.Rd | 2 GGIR-2.0-0/GGIR/man/get_nw_clip_block_params.Rd |only GGIR-2.0-0/GGIR/man/get_starttime_weekday_meantemp_truncdata.Rd |only GGIR-2.0-0/GGIR/man/identify_levels.Rd | 23 GGIR-2.0-0/GGIR/man/is_this_a_dst_night.Rd | 4 GGIR-2.0-0/GGIR/man/numUnpack.Rd | 18 GGIR-2.0-0/GGIR/src/numUnpack.cpp | 47 GGIR-2.0-0/GGIR/tests/testthat/test_applyExtFunction.R |only GGIR-2.0-0/GGIR/tests/testthat/test_chainof5parts.R | 46 GGIR-2.0-0/GGIR/tests/testthat/test_getfolderstructure.R | 2 GGIR-2.0-0/GGIR/tests/testthat/test_gmetric.R | 6 GGIR-2.0-0/GGIR/tests/testthat/test_greadaccfile.R | 3 GGIR-2.0-0/GGIR/tests/testthat/test_identify_levels.R | 16 GGIR-2.0-0/GGIR/tests/testthat/test_is_this_a_dst_night.R | 4 GGIR-2.0-0/GGIR/tests/testthat/test_read.myacc.csv.R | 16 GGIR-2.0-0/GGIR/tests/testthat/test_updateBlocksize.R | 4 GGIR-2.0-0/GGIR/vignettes/ExternalFunction.Rmd |only GGIR-2.0-0/GGIR/vignettes/GGIR.Rmd | 473 ++++- GGIR-2.0-0/GGIR/vignettes/reportexample.jpg |binary 117 files changed, 3906 insertions(+), 3156 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press).
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between GE versions 0.0.7 dated 2020-04-23 and 0.0.8 dated 2020-05-01
GE-0.0.7/GE/man/beta_to_rate.Rd |only GE-0.0.8/GE/DESCRIPTION | 6 GE-0.0.8/GE/MD5 | 45 +++--- GE-0.0.8/GE/NAMESPACE | 5 GE-0.0.8/GE/R/SCES_A.R | 2 GE-0.0.8/GE/R/demand_coefficient.R | 31 ++++ GE-0.0.8/GE/R/dst_plot.R | 3 GE-0.0.8/GE/R/gemInputOutputTable_2_8_4.R | 140 +++++++++----------- GE-0.0.8/GE/R/gemInputOutputTable_5_4.R | 12 + GE-0.0.8/GE/R/gemInputOutputTable_7_4.R | 7 - GE-0.0.8/GE/R/gemInputOutputTable_8_8.R |only GE-0.0.8/GE/R/gemInputOutputTable_CES_3_3.R | 36 ++--- GE-0.0.8/GE/R/gemInputOutputTable_Leontief_3_3.R | 21 +-- GE-0.0.8/GE/R/gemStandardInputOutputTable_7_4.R |only GE-0.0.8/GE/R/rate_to_beta.R | 43 +++--- GE-0.0.8/GE/R/sdm_dstl.R |only GE-0.0.8/GE/man/demand_coefficient.Rd | 32 ++++ GE-0.0.8/GE/man/dst_plot.Rd | 5 GE-0.0.8/GE/man/gemInputOutputTable_2_8_4.Rd | 51 +++---- GE-0.0.8/GE/man/gemInputOutputTable_5_4.Rd | 8 + GE-0.0.8/GE/man/gemInputOutputTable_7_4.Rd | 4 GE-0.0.8/GE/man/gemInputOutputTable_8_8.Rd |only GE-0.0.8/GE/man/gemInputOutputTable_CES_3_3.Rd | 20 +- GE-0.0.8/GE/man/gemInputOutputTable_Leontief_3_3.Rd | 17 +- GE-0.0.8/GE/man/gemStandardInputOutputTable_7_4.Rd |only GE-0.0.8/GE/man/rate_to_beta.Rd | 35 ++++- GE-0.0.8/GE/man/sdm_dstl.Rd |only 27 files changed, 319 insertions(+), 204 deletions(-)
Title: Empirical Research in Economics with R
Description: Functions, datasets, and sample codes related to the book of 'Empirical Research in Economics: Growing up with R' by Dr. Changyou Sun are included. Marginal effects for binary or ordered choice models can be calculated. Static and dynamic Almost Ideal Demand System (AIDS) models can be estimated. A typical event analysis in finance can be conducted with several functions included.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>
Diff between erer versions 2.5 dated 2016-02-25 and 3.0 dated 2020-05-01
DESCRIPTION | 8 +++---- MD5 | 20 +++++++++--------- NAMESPACE | 1 R/aiStaHau.r | 56 +++++++++++++++++++++++++++++++++++----------------- R/bsTab.r | 2 - R/ocME.r | 4 +-- R/ur.df2.r | 34 ++++++++++++++++++++++++++----- man/aiStaHau.Rd | 8 ++++--- man/bsTab.Rd | 2 - man/erer-package.Rd | 4 +-- man/ur.df2.Rd | 13 +++++++----- 11 files changed, 100 insertions(+), 52 deletions(-)
Title: MCMC for Spike and Slab Regression
Description: Spike and slab regression with a variety of residual error
distributions corresponding to Gaussian, Student T, probit, logit, SVM, and a
few others. Spike and slab regression is Bayesian regression with prior
distributions containing a point mass at zero. The posterior updates the
amount of mass on this point, leading to a posterior distribution that is
actually sparse, in the sense that if you sample from it many coefficients are
actually zeros. Sampling from this posterior distribution is an elegant way
to handle Bayesian variable selection and model averaging. See
<DOI:10.1504/IJMMNO.2014.059942> for an explanation of the Gaussian case.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between BoomSpikeSlab versions 1.2.2 dated 2020-03-31 and 1.2.3 dated 2020-05-01
DESCRIPTION | 12 ++++++------ MD5 | 28 +++++++++++++++++++++++++++- inst/tests/tests |only tests |only 4 files changed, 33 insertions(+), 7 deletions(-)
Title: Applied Statistical Time Series Analysis
Description: Data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples (4th ed), by R.H. Shumway and D.S. Stoffer. Springer Texts in Statistics, 2017, <DOI:10.1007/978-3-319-52452-8>, and Time Series: A Data Analysis Approach Using R. Chapman-Hall, 2019, <ISBN: 978-0367221096>.
Author: David Stoffer
Maintainer: David Stoffer <stoffer@pitt.edu>
Diff between astsa versions 1.9 dated 2019-05-08 and 1.10 dated 2020-05-01
DESCRIPTION | 10 +- MD5 | 80 +++++++++++---------- NAMESPACE | 4 - R/acf1.R | 6 + R/acf2.R | 8 +- R/arma.spec.R | 9 +- R/ccf2.R | 3 R/lag1.plot.R | 4 - R/lag2.plot.R | 4 - R/mvspec.R | 22 +++-- R/tsplot.R | 81 ++++++++++++++++++--- data/polio.rda |only man/Grid.Rd | 2 man/Kfilter0.Rd | 67 ------------------ man/Kfilter1.Rd | 80 --------------------- man/Kfilter2.Rd | 68 ------------------ man/Ksmooth0.Rd | 40 ---------- man/Ksmooth1.Rd | 80 --------------------- man/Ksmooth2.Rd | 72 ------------------- man/LagReg.Rd | 188 --------------------------------------------------- man/SVfilter.Rd | 63 ----------------- man/SigExtract.Rd | 126 ---------------------------------- man/UnempRate.Rd | 1 man/WBC.Rd | 4 - man/acf1.Rd | 2 man/acf2.Rd | 2 man/arma.spec.Rd | 4 - man/astsa-package.Rd | 6 - man/ccf2.Rd | 10 +- man/cpg.Rd | 2 man/djia.Rd | 4 - man/gtemp.Rd | 2 man/gtemp_ocean.Rd | 2 man/lag1.plot.Rd | 7 + man/lag2.plot.Rd | 9 +- man/mvspec.Rd | 9 +- man/polio.Rd |only man/sarima.Rd | 2 man/stoch.reg.Rd | 108 ----------------------------- man/tsplot.Rd | 36 +++++---- man/unemp.Rd | 1 man/varve.Rd | 14 --- 42 files changed, 214 insertions(+), 1028 deletions(-)
Title: Asymmetric Price Transmission
Description: Asymmetric price transmission between two time series is assessed. Several functions are available for linear and nonlinear threshold cointegration, and furthermore, symmetric and asymmetric error correction model.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>
Diff between apt versions 2.5 dated 2016-02-25 and 3.0 dated 2020-05-01
apt-2.5/apt/R/guiApt.r |only apt-2.5/apt/R/guiCor.r |only apt-2.5/apt/build |only apt-2.5/apt/inst/doc/ERERchapter17smallSize.pdf |only apt-2.5/apt/inst/doc/apt.R |only apt-2.5/apt/inst/doc/apt.Rnw |only apt-2.5/apt/man/guiApt.Rd |only apt-2.5/apt/man/guiCor.Rd |only apt-2.5/apt/vignettes |only apt-3.0/apt/DESCRIPTION | 15 +++++++-------- apt-3.0/apt/MD5 | 16 +++------------- apt-3.0/apt/NAMESPACE | 4 ++-- apt-3.0/apt/man/apt-package.Rd | 13 +++++-------- 13 files changed, 17 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-21 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-03 0.6-6
2017-09-15 0.6-4
2017-02-22 0.6-1
2015-09-13 0.6-0
2015-07-01 0.5-1
2015-02-07 0.5-0
2014-12-11 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-17 0.2.6
2019-10-10 0.2.5