Title: Robust Linear Quantile Regression
Description: It fits a robust linear quantile regression model using a new
family of zero-quantile distributions for the error term. This family of
distribution includes skewed versions of the Normal, Student's t, Laplace, Slash
and Contaminated Normal distribution. It also performs logistic quantile regression for bounded responses
as shown in Bottai et.al.(2009) <doi:10.1002/sim.3781>. It provides estimates and full inference.
It also provides envelopes plots for assessing the fit and confidences bands
when several quantiles are provided simultaneously.
Author: Christian E. Galarza, Luis Benites, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between lqr versions 2.0 dated 2020-01-09 and 2.11 dated 2020-05-02
lqr-2.0/lqr/data/ais.txt.gz |only lqr-2.0/lqr/data/resistance.txt.gz |only lqr-2.11/lqr/DESCRIPTION | 8 ++-- lqr-2.11/lqr/MD5 | 10 +++--- lqr-2.11/lqr/data/ais.txt |only lqr-2.11/lqr/data/resistance.txt |only lqr-2.11/lqr/man/ais.Rd | 60 ++++++++++++++++++++++++++++--------- lqr-2.11/lqr/man/resistence.Rd | 60 ++++++++----------------------------- 8 files changed, 69 insertions(+), 69 deletions(-)
Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>,
a standalone 'C++' library for fast symbolic manipulation. The package has functionalities
for symbolic computation like calculating exact mathematical expressions, solving
systems of linear equations and code generation.
Author: Jialin Ma [cre, aut],
Isuru Fernando [aut],
Xin Chen [aut]
Maintainer: Jialin Ma <marlin@inventati.org>
Diff between symengine versions 0.1.1 dated 2020-04-28 and 0.1.2 dated 2020-05-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- configure | 14 +++++++++++++- src/Makevars.in | 4 ++-- 4 files changed, 21 insertions(+), 9 deletions(-)
Title: Parallel Version of the L-BFGS-B Optimization Method
Description: Provides a parallel version of the L-BFGS-B method of optim(). The main function of the package is optimParallel(), which has the same usage and output as optim(). Using optimParallel() can significantly reduce the optimization time.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between optimParallel versions 1.0 dated 2020-02-25 and 1.0-1 dated 2020-05-02
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS | 13 ++++++++++--- R/optimParallel.R | 2 ++ build/vignette.rds |binary tests/testthat/test-issues.R | 8 ++++++++ 6 files changed, 30 insertions(+), 13 deletions(-)
Title: High Dimensional Bayesian Mediation Analysis
Description: Perform mediation analysis in the presence of high-dimensional
mediators based on the potential outcome framework. Bayesian Mediation
Analysis (BAMA), developed by Song et al (2019) <doi:10.1111/biom.13189>,
relies on two Bayesian sparse linear mixed models to simultaneously analyze
a relatively large number of mediators for a continuous exposure and outcome
assuming a small number of mediators are truly active. This sparsity
assumption also allows the extension of univariate mediator analysis by
casting the identification of active mediators as a variable selection
problem and applying Bayesian methods with continuous shrinkage priors on
the effects.
Author: Alexander Rix [aut, cre],
Yanyi Song [aut]
Maintainer: Alexander Rix <alexrix@umich.edu>
Diff between bama versions 1.0.0 dated 2020-04-27 and 1.0.1 dated 2020-05-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/bama.html | 20 ++++++++++---------- src/bama.cpp | 40 ++++++++++++++++++++-------------------- 5 files changed, 42 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-01 0.8-2
2017-01-08 0.5-1
2016-12-04 0.5-0
Title: Generation of Multivariate Ordinal Variates
Description: A method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006) <DOI:10.1080/10629360600569246>.
Author: Anup Amatya, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between MultiOrd versions 2.4.1 dated 2019-05-14 and 2.4.2 dated 2020-05-02
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/MultiOrd-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: R Templates for Reproducible Data Analyses
Description: A collection of R Markdown templates for nicely structured, reproducible
data analyses in R. The templates have embedded examples on how to write
citations, footnotes, equations and use colored message/info boxes, how to
cross-reference different parts/sections in the report, provide a nice
table of contents (toc) with a References section and proper R session
information as well as examples using DT tables and ggplot2 graphs.
The bookdown Lite template theme supports code folding.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between rtemps versions 0.4.0 dated 2020-03-17 and 0.5.0 dated 2020-05-02
rtemps-0.4.0/rtemps/inst/rmarkdown/templates/bookdown_lite/skeleton/build_book.sh |only rtemps-0.5.0/rtemps/DESCRIPTION | 6 - rtemps-0.5.0/rtemps/MD5 | 28 ++++-- rtemps-0.5.0/rtemps/NEWS.md | 4 rtemps-0.5.0/rtemps/R/create_temp.R | 34 ++++++- rtemps-0.5.0/rtemps/README.md | 28 ++---- rtemps-0.5.0/rtemps/inst/rmarkdown/templates/bookdown_lite/skeleton/_build.sh |only rtemps-0.5.0/rtemps/inst/rmarkdown/templates/bookdown_lite/skeleton/skeleton.Rmd | 43 +++++----- rtemps-0.5.0/rtemps/inst/rmarkdown/templates/bookdown_lite/skeleton/style.css | 2 rtemps-0.5.0/rtemps/inst/rstudio |only 10 files changed, 94 insertions(+), 51 deletions(-)
Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Joshua M. Ulrich [ctb],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.8-7 dated 2020-01-10 and 1.8-8 dated 2020-05-02
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS | 9 +++++++++ R/merge.zoo.R | 6 +++++- R/na.approx.R | 1 + R/window.zoo.R | 14 ++++++++++---- build/vignette.rds |binary inst/doc/zoo-design.pdf |binary inst/doc/zoo-faq.pdf |binary inst/doc/zoo-quickref.pdf |binary inst/doc/zoo-read.pdf |binary inst/doc/zoo.pdf |binary man/merge.zoo.Rd | 5 +++-- tests/Examples/zoo-Ex.Rout.save | 19 ++++++++++++------- tests/as.Date.Rout.save | 9 ++++++--- 15 files changed, 64 insertions(+), 35 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.4.5 dated 2020-03-01 and 0.4.6 dated 2020-05-02
DESCRIPTION | 6 +- MD5 | 24 ++++----- NEWS.md | 7 ++ R/dots.R | 48 +++++++++++++++++++ R/env-special.R | 2 build/rlang.pdf |binary man/caller_env.Rd | 2 src/internal/dots.c | 6 +- src/internal/internal.c | 10 +--- src/internal/internal.h | 3 - src/version.c | 2 tests/testthat/test-node.R | 4 - tests/testthat/test-nse-force.R | 99 +++++++++++++++++++++++++++++++++++----- 13 files changed, 169 insertions(+), 44 deletions(-)
Title: Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Description: Helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich <https://fgcz.ch>. We use this package
mainly for prototyping, teaching, and having fun with proteomics data.
But it can also be used to do data analysis for small scale data sets.
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>),
Jonas Grossmann [aut] (<https://orcid.org/0000-0002-6899-9020>),
Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Diff between protViz versions 0.6.4 dated 2020-04-17 and 0.6.8 dated 2020-05-02
protViz-0.6.4/protViz/inst/unitTests |only protViz-0.6.4/protViz/tests/runTests.R |only protViz-0.6.8/protViz/DESCRIPTION | 8 +- protViz-0.6.8/protViz/MD5 | 34 +++++------ protViz-0.6.8/protViz/R/centroid.R | 59 ++++++++++++++------ protViz-0.6.8/protViz/build/partial.rdb |binary protViz-0.6.8/protViz/inst/NEWS.Rd | 4 + protViz-0.6.8/protViz/inst/doc/PTM_MarkerFinder.pdf |binary protViz-0.6.8/protViz/inst/doc/poster.pdf |binary protViz-0.6.8/protViz/inst/doc/protViz.pdf |binary protViz-0.6.8/protViz/man/centroid.Rd | 38 ++++++++++-- protViz-0.6.8/protViz/tests/testthat |only protViz-0.6.8/protViz/tests/testthat.R |only 13 files changed, 99 insertions(+), 44 deletions(-)
Title: Area Correction Methods
Description: Post-construction fatality monitoring studies at wind facilities are based on data from searches for bird and bat carcasses in plots beneath turbines. Bird and bat carcasses can fall outside of the search plot. Bird and bat carcasses from wind turbines often fall outside of the searched area. To compensate, area correction (AC) estimations are calculated to estimate the percentage of fatalities that fall within the searched area versus those that fall outside of it. This package provides two likelihood based methods and one physics based method (Hull and Muir (2010) <doi:10.1080/14486563.2010.9725253>, Huso and Dalthorp (2014) <doi:10.1002/jwmg.663>) to estimate the carcass fall distribution. There are also functions for calculating the proportion of area searched within one unit annuli, log logistic distribution functions, and truncated distribution functions.
Author: Jared Studyvin [aut, cre],
Paul Rabie [aut],
Daniel Riser-Espinoza [aut],
Trent McDonald [ctb]
Maintainer: Jared Studyvin <jstudyvin@west-inc.com>
Diff between windAC versions 1.2.1 dated 2020-02-21 and 1.2.2 dated 2020-05-02
DESCRIPTION | 14 ++++++------ MD5 | 36 +++++++++++++++---------------- R/calcAC.R | 18 +++++++++------ R/getProportionAreaSearched.R | 16 ++++++++++++- man/LogLogistic.Rd | 8 ++---- man/calcAC.Rd | 19 ++++++++++++---- man/carcassDistance.Rd | 6 +++-- man/geometricRectanglePropSearchTable.Rd | 9 ++++++- man/geometricRoadPadPropSearchTable.Rd | 10 ++++++-- man/getDistanceProbability.Rd | 11 +++++++-- man/getProportionAreaSearched.Rd | 9 ++++++- man/hallingstad.Rd | 6 +++-- man/hullMuirAreaCorrection.Rd | 14 +++++++++--- man/proportionAreaSearched.Rd | 6 +++-- man/triangleProb.Rd | 3 -- man/truncatedDistribution.Rd | 20 +++++++++++++---- man/turbineSpatial.Rd | 8 +++++- man/weightFun.Rd | 13 +++++++++-- man/windAC.Rd | 1 19 files changed, 157 insertions(+), 70 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre] (<https://orcid.org/0000-0002-3591-4203>)
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 0.9.5 dated 2020-04-10 and 0.9.6 dated 2020-05-02
DESCRIPTION | 6 MD5 | 34 +- NAMESPACE | 7 R/impute_dt.R |only R/join_dt.R | 8 R/on_attach.R | 6 R/setops.R |only R/transpose.R | 15 + inst/doc/chinese_tutorial.R | 263 ++++++++++----------- inst/doc/chinese_tutorial.Rmd | 29 -- inst/doc/chinese_tutorial.html | 497 +++++++++++++++++++++++++++++++++++------ inst/doc/example2_join.R | 14 + inst/doc/example2_join.Rmd | 22 + inst/doc/example2_join.html | 64 ++++- man/impute_dt.Rd |only man/join.Rd | 3 man/reexports.Rd | 3 man/setops.Rd |only vignettes/chinese_tutorial.Rmd | 29 -- vignettes/example2_join.Rmd | 22 + 20 files changed, 729 insertions(+), 293 deletions(-)
Title: Visualizing the Performance of Scoring Classifiers
Description: ROC graphs, sensitivity/specificity curves, lift charts,
and precision/recall plots are popular examples of trade-off
visualizations for specific pairs of performance measures. ROCR is a
flexible tool for creating cutoff-parameterized 2D performance curves
by freely combining two from over 25 performance measures (new
performance measures can be added using a standard interface).
Curves from different cross-validation or bootstrapping runs can be
averaged by different methods, and standard deviations, standard
errors or box plots can be used to visualize the variability across
the runs. The parameterization can be visualized by printing cutoff
values at the corresponding curve positions, or by coloring the
curve according to cutoff. All components of a performance plot can
be quickly adjusted using a flexible parameter dispatching
mechanism. Despite its flexibility, ROCR is easy to use, with only
three commands and reasonable default values for all optional
parameters.
Author: Tobias Sing [aut],
Oliver Sander [aut],
Niko Beerenwinkel [aut],
Thomas Lengauer [aut],
Thomas Unterthiner [ctb],
Felix G.M. Ernst [cre] (<https://orcid.org/0000-0001-5064-0928>)
Maintainer: Felix G.M. Ernst <felix.gm.ernst@outlook.com>
Diff between ROCR versions 1.0-7 dated 2015-03-26 and 1.0-11 dated 2020-05-02
ROCR-1.0-11/ROCR/DESCRIPTION | 40 - ROCR-1.0-11/ROCR/MD5 | 61 - ROCR-1.0-11/ROCR/NAMESPACE | 33 ROCR-1.0-11/ROCR/NEWS | 54 - ROCR-1.0-11/ROCR/R/ROCR_aux.R | 177 ++-- ROCR-1.0-11/ROCR/R/performance.R | 829 ++++++++++++++-------- ROCR-1.0-11/ROCR/R/performance_measures.R | 1013 ++++++++++++++------------- ROCR-1.0-11/ROCR/R/performance_plots.R | 1106 +++++++++++++++--------------- ROCR-1.0-11/ROCR/R/prediction.R | 438 +++++++---- ROCR-1.0-11/ROCR/R/zzz.R | 514 ++++++++++++- ROCR-1.0-11/ROCR/README.md |only ROCR-1.0-11/ROCR/build |only ROCR-1.0-11/ROCR/demo/00Index | 2 ROCR-1.0-11/ROCR/demo/ROCR.R | 522 +++++++------- ROCR-1.0-11/ROCR/inst/CITATION | 36 ROCR-1.0-11/ROCR/inst/doc |only ROCR-1.0-11/ROCR/man/ROCR.hiv.Rd | 90 +- ROCR-1.0-11/ROCR/man/ROCR.simple.Rd | 56 - ROCR-1.0-11/ROCR/man/ROCR.xval.Rd | 62 - ROCR-1.0-11/ROCR/man/performance-class.Rd | 142 ++- ROCR-1.0-11/ROCR/man/performance.Rd | 432 +++++------ ROCR-1.0-11/ROCR/man/plot-methods.Rd | 280 ++++--- ROCR-1.0-11/ROCR/man/prediction-class.Rd | 124 +-- ROCR-1.0-11/ROCR/man/prediction.Rd | 156 ++-- ROCR-1.0-11/ROCR/tests |only ROCR-1.0-11/ROCR/vignettes |only ROCR-1.0-7/ROCR/INSTALL |only ROCR-1.0-7/ROCR/README |only ROCR-1.0-7/ROCR/data/datalist |only ROCR-1.0-7/ROCR/tools |only 30 files changed, 3537 insertions(+), 2630 deletions(-)
Title: Tools at the Intersection of 'purrr' and 'dplyr'
Description: Some functions at the intersection of 'dplyr' and
'purrr' that formerly lived in 'purrr'.
Author: Lionel Henry [aut, cre],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between purrrlyr versions 0.0.5 dated 2019-03-15 and 0.0.6 dated 2020-05-02
DESCRIPTION | 37 ++++++++++++++++++++++--------------- MD5 | 14 +++++++------- NEWS.md | 5 +++++ README.md | 4 ++-- man/by_row.Rd | 20 ++++++++++++++++---- man/by_slice.Rd | 10 ++++++++-- tests/testthat/test-dmap.R | 2 +- tests/testthat/test-rows.R | 14 +++++++------- 8 files changed, 68 insertions(+), 38 deletions(-)
Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between nCal versions 2018.8-20 dated 2018-08-20 and 2020.5-1 dated 2020-05-02
ChangeLog | 6 ++++++ DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- R/ncal.R | 8 ++++---- build/vignette.rds |binary inst/doc/nCal-vignette.pdf |binary inst/unitTests/runit.5PL.R | 2 +- man/get.S1.Rd | 2 -- man/read.luminex.xls.Rd | 2 -- 10 files changed, 26 insertions(+), 24 deletions(-)
Title: Interactive Interfaces for Results Exploration
Description: Shiny interfaces and graphical functions for multivariate analysis results exploration.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between explor versions 0.3.5 dated 2019-04-17 and 0.3.6 dated 2020-05-02
DESCRIPTION | 20 ++-- MD5 | 100 ++++++++++----------- NAMESPACE | 2 NEWS.md | 12 ++ R/CA_plots.R | 33 +++++- R/MCA_plots.R | 43 ++++++--- R/PCA_plots.R | 24 +++-- R/explor.R | 1 R/explor_multi.R | 60 ++++++++++-- R/explor_multi_CA.R | 59 ++++++++++-- R/explor_multi_MCA.R | 17 ++- R/explor_multi_PCA.R | 12 +- R/plots.R | 2 R/prepare_results.R | 1 R/prepare_results_CA.R | 43 +++++++-- R/prepare_results_MASS_mca.R | 2 R/prepare_results_MCA.R | 10 +- R/prepare_results_PCA.R | 2 R/prepare_results_dudi_coa.R | 10 +- R/prepare_results_dudi_mca.R | 9 + R/prepare_results_dudi_pca.R | 5 - R/prepare_results_prcomp.R | 1 R/prepare_results_princomp.R | 2 R/prepare_results_speMCA.R | 1 R/prepare_results_textmodel_ca.R |only README.md | 3 build/vignette.rds |binary inst/doc/introduction_en.Rmd | 16 +-- inst/doc/introduction_en.html | 37 ++++--- inst/doc/introduction_fr.Rmd | 16 +-- inst/doc/introduction_fr.html | 45 +++++---- inst/po/fr/LC_MESSAGES/R-explor.mo |binary man/CA_var_plot.Rd | 30 ++++-- man/MCA_biplot.Rd | 26 +++-- man/MCA_ind_plot.Rd | 24 +++-- man/MCA_var_plot.Rd | 28 ++++- man/PCA_ind_plot.Rd | 23 +++- man/PCA_var_plot.Rd | 25 +++-- man/explor.Rd | 18 +-- man/ggind.Rd | 12 ++ man/ggvar.Rd | 6 - man/prepare_results.Rd | 28 +---- po/R-explor.pot | 15 ++- po/R-fr.mo |binary po/R-fr.po | 17 ++- tests/testthat/test_prepare_results_CA.R | 8 - tests/testthat/test_prepare_results_dudi.acm.R | 8 - tests/testthat/test_prepare_results_dudi.coa.R | 12 +- tests/testthat/test_prepare_results_dudi.pca.R | 10 -- tests/testthat/test_prepare_results_textmodel_ca.R |only vignettes/introduction_en.Rmd | 16 +-- vignettes/introduction_fr.Rmd | 16 +-- 52 files changed, 588 insertions(+), 322 deletions(-)
Title: Chinese Numerals Processing
Description: Chinese numerals processing in R, such as conversion between
Chinese numerals and Arabic numerals as well as detection and extraction of
Chinese numerals in character objects and string. This package supports
the casual scale naming system and the respective SI prefix systems used
in mainland China and Taiwan:
"China Statutory Measurement Units"
State Administration for Market Regulation (2019) <http://gkml.samr.gov.cn/nsjg/jls/201902/t20190225_291134.html>
"Names, Definitions and Symbols of the Legal Units of Measurement and the Decimal Multiples and Submultiples"
Ministry of Economic Affairs (2019) <https://gazette.nat.gov.tw/egFront/detail.do?metaid=108965>.
Author: Elgar Teo [aut, cre]
Maintainer: Elgar Teo <elgarteo@connect.hku.hk>
Diff between cnum versions 0.1.1 dated 2020-04-13 and 0.1.2 dated 2020-05-02
DESCRIPTION | 12 ++-- MD5 | 37 +++++++------ NAMESPACE | 3 + NEWS.md | 10 +++ R/RcppExports.R |only R/c2num-utils.R | 145 +++++++++++++--------------------------------------- R/c2num.R | 63 ++++++++++------------ R/cnum-package.R | 22 ++++--- R/cnum-tools.R | 39 ++++++------- R/conversion.R | 3 - R/data-utils.R | 8 +- R/num2c-utils.R | 107 +++++--------------------------------- R/num2c.R | 50 +++++++++-------- README.md | 1 man/cnum-package.Rd | 16 ++--- man/conversion.Rd | 19 +++--- man/tools.Rd | 19 +++--- src |only 18 files changed, 214 insertions(+), 340 deletions(-)
Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using
MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many
other sources.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between bsts versions 0.9.2 dated 2019-09-22 and 0.9.5 dated 2020-05-02
DESCRIPTION | 14 MD5 | 66 ++- R/add.dynamic.regression.R | 6 R/add.trig.R | 4 R/bsts.R | 24 + R/plots.R | 28 - inst/tests/tests |only inst/tests/testthat/test-autoar.R |only inst/tests/testthat/test-dynamic-regression.R | 47 ++ inst/tests/testthat/test-poisson.R | 8 inst/tests/testthat/test-prediction-errors.R | 9 inst/tests/testthat/test-prediction.R | 96 +++++ inst/tests/testthat/test-trig.R |only man/mixed.frequency.Rd | 3 src/bsts.cc | 2 src/create_state_model.cpp | 20 - src/mixed_frequency.cc | 11 src/model_manager.cc | 54 --- src/model_manager.h | 95 ----- src/state_space_student_model_manager.cc | 464 +++++++++++++------------- src/timestamp_info.cc |only src/timestamp_info.h |only tests |only 23 files changed, 524 insertions(+), 427 deletions(-)
Title: Method of Successive Dichotomizations
Description: Implements the method of successive dichotomizations by
Bradley and Massof (2018) <doi:10.1371/journal.pone.0206106>,
which estimates item measures, person measures and ordered rating
category thresholds given ordinal rating scale data.
Author: Chris Bradley <cbradley05@gmail.com>
Maintainer: Chris Bradley <cbradley05@gmail.com>
Diff between msd versions 0.1.0 dated 2020-03-14 and 0.2.0 dated 2020-05-02
DESCRIPTION | 6 - MD5 | 23 ++--- NAMESPACE | 2 NEWS.md | 12 ++ R/msd.R | 250 +++++++++++++++++++++++++++++++++++++++++++++++++-------- README.md | 61 ++++++++++++- man/expdata.Rd | 12 +- man/misfit.Rd | 23 +++-- man/msd.Rd | 36 ++++++-- man/pms.Rd | 23 +++-- man/rasch.Rd | 32 +++++-- man/simdata.Rd |only man/thresh.Rd | 4 13 files changed, 396 insertions(+), 88 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. The well-known 'car' package provides type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.1.2 dated 2020-04-22 and 0.1.3 dated 2020-05-02
sasLM-0.1.2/sasLM/inst/doc/Validation-Report-ANOVA-2004131550.pdf |only sasLM-0.1.2/sasLM/inst/doc/Validation-Report-GLM-2004131546.pdf |only sasLM-0.1.3/sasLM/DESCRIPTION | 8 - sasLM-0.1.3/sasLM/MD5 | 59 ++++------ sasLM-0.1.3/sasLM/R/ANOVA.R | 12 +- sasLM-0.1.3/sasLM/R/BasicUtil.R | 26 ++-- sasLM-0.1.3/sasLM/R/GLM.R | 2 sasLM-0.1.3/sasLM/R/ModelMatrix.R | 11 + sasLM-0.1.3/sasLM/R/REG.R | 4 sasLM-0.1.3/sasLM/R/SS.R | 5 sasLM-0.1.3/sasLM/R/aov1.R | 6 - sasLM-0.1.3/sasLM/R/aov2.R | 6 - sasLM-0.1.3/sasLM/R/aov3.R | 6 - sasLM-0.1.3/sasLM/R/cSS.R | 4 sasLM-0.1.3/sasLM/R/e1.R | 14 +- sasLM-0.1.3/sasLM/R/e2.R | 9 - sasLM-0.1.3/sasLM/R/e3.R | 34 +++-- sasLM-0.1.3/sasLM/R/lfit.R | 1 sasLM-0.1.3/sasLM/inst/NEWS.Rd | 11 + sasLM-0.1.3/sasLM/inst/doc/Validation-Report-GLM-2005022010.pdf |only sasLM-0.1.3/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.1.3/sasLM/man/ANOVA.Rd | 3 sasLM-0.1.3/sasLM/man/BasicUtil.Rd | 1 sasLM-0.1.3/sasLM/man/GLM.Rd | 5 sasLM-0.1.3/sasLM/man/REG.Rd | 5 sasLM-0.1.3/sasLM/man/aov1.Rd | 3 sasLM-0.1.3/sasLM/man/aov2.Rd | 3 sasLM-0.1.3/sasLM/man/aov3.Rd | 3 sasLM-0.1.3/sasLM/man/cSS.Rd | 3 sasLM-0.1.3/sasLM/man/e2.Rd | 3 sasLM-0.1.3/sasLM/man/sasLM-package.Rd | 3 sasLM-0.1.3/sasLM/tests/Test.R | 3 32 files changed, 141 insertions(+), 112 deletions(-)
Title: R Scripts in the Google Cloud via Cloud Run, Cloud Build and
Cloud Scheduler
Description: Tools to easily enable R scripts in the Google Cloud Platform.
Utilise cloud services such as Cloud Run <https://cloud.run> for R over HTTP,
Cloud Build <https://cloud.google.com/cloud-build/> for Continuous Delivery
and Integration services and
Cloud Scheduler <https://cloud.google.com/scheduler/> for scheduled scripts.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>),
Sunholo Ltd [cph]
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between googleCloudRunner versions 0.1.1 dated 2020-02-06 and 0.2.0 dated 2020-05-02
DESCRIPTION | 15 - MD5 | 131 +++++----- NAMESPACE | 13 + NEWS.md | 20 + R/build_sources.R | 39 ++- R/buildsteps.R | 8 R/buildsteps_templates.R | 277 ++++++++++++++++------ R/buildtriggers.R | 2 R/cloudbuild.R | 21 - R/cloudbuild_schedule.R | 2 R/cloudrun.R | 5 R/cloudscheduler.R | 20 + R/deploy.R | 135 +++++++++- R/init.R | 13 + R/plumber.R | 5 R/print_methods.R | 7 R/rstudio_gadget.R | 5 R/setup.R |only R/setup_auth.R |only R/setup_buildemail.R |only R/setup_parts.R |only R/setup_tests.R |only R/utilities.R | 12 R/yaml.R | 14 - README.md | 20 + inst/cloudbuild/cloudbuild_packages.yml | 17 - inst/docker/packages/Dockerfile | 12 inst/r_buildsteps |only inst/schedule/test_auth.R |only inst/scheduled_rmarkdown/scheduled_rmarkdown.html |only inst/ssh/github_setup.sh |only man/Job.Rd | 2 man/RepoSource.Rd | 3 man/Source.Rd | 6 man/StorageSource.Rd | 6 man/cr_bucket_set.Rd | 4 man/cr_build_make.Rd | 7 man/cr_build_schedule_http.Rd | 2 man/cr_build_upload_gcs.Rd | 3 man/cr_buildstep.Rd | 1 man/cr_buildstep_bash.Rd | 1 man/cr_buildstep_decrypt.Rd | 6 man/cr_buildstep_df.Rd | 1 man/cr_buildstep_docker.Rd | 4 man/cr_buildstep_edit.Rd | 1 man/cr_buildstep_extract.Rd | 1 man/cr_buildstep_git.Rd | 24 - man/cr_buildstep_mailgun.Rd | 1 man/cr_buildstep_nginx_setup.Rd | 1 man/cr_buildstep_packagetests.Rd |only man/cr_buildstep_pkgdown.Rd | 43 ++- man/cr_buildstep_r.Rd | 5 man/cr_buildstep_run.Rd | 4 man/cr_buildstep_secret.Rd |only man/cr_buildstep_slack.Rd | 1 man/cr_buildtrigger.Rd | 2 man/cr_deploy_docker.Rd | 3 man/cr_deploy_git_html.Rd | 1 man/cr_deploy_github_docker.Rd | 1 man/cr_deploy_packagetests.Rd |only man/cr_deploy_pkgdown.Rd | 36 +- man/cr_deploy_r.Rd | 6 man/cr_deploy_run.Rd | 1 man/cr_email_set.Rd | 4 man/cr_plumber_pubsub.Rd | 6 man/cr_project_set.Rd | 4 man/cr_region_set.Rd | 4 man/cr_run.Rd | 3 man/cr_schedule.Rd | 7 man/cr_setup.Rd |only man/cr_setup_auth.Rd |only man/cr_setup_service.Rd |only man/cr_setup_test.Rd |only tests/testthat/test-build.R | 82 ++++-- 74 files changed, 787 insertions(+), 293 deletions(-)
More information about googleCloudRunner at CRAN
Permanent link
Title: Exchange Rate Regime Analysis
Description: Exchange rate regression and structural change tools
for estimating, testing, dating, and monitoring
(de facto) exchange rate regimes.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Ajay Shah [ctb],
Ila Patnaik [ctb],
Anmol Sethy [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between fxregime versions 1.0-3 dated 2013-12-10 and 1.0-4 dated 2020-05-02
DESCRIPTION | 19 ++++++++++--------- MD5 | 30 +++++++++++++++--------------- NEWS | 8 ++++++++ R/fxregimes.R | 3 +-- R/fxreturns.R | 9 ++++++--- R/gbreakpoints.R | 16 ++++++++++------ build/vignette.rds |binary data/FXRatesCHF.rda |binary inst/CITATION | 4 ++-- inst/doc/CNY.Rnw | 10 +++++++++- inst/doc/CNY.pdf |binary inst/doc/INR.Rnw | 10 +++++++++- inst/doc/INR.pdf |binary man/fxreturns.Rd | 5 +++-- vignettes/CNY.Rnw | 10 +++++++++- vignettes/INR.Rnw | 10 +++++++++- 16 files changed, 91 insertions(+), 43 deletions(-)
Title: The Pareto and the Piecewise Pareto Distribution
Description: Utilities for the Pareto and piecewise Pareto distribution
that are useful for reinsurance pricing. In particular, the package provides
a non-trivial algorithm that can be used to match the expected losses of a
tower of reinsurance layers with a layer-independent collective risk model.
The theoretical background of the matching algorithm and most other methods
are described in Ulrich Riegel (2018) <doi:10.1007/s13385-018-0177-3>.
Author: Ulrich Riegel [aut, cre]
Maintainer: Ulrich Riegel <ulrich.riegel@gmx.de>
Diff between Pareto versions 1.1.5 dated 2020-04-03 and 2.0.0 dated 2020-05-02
DESCRIPTION | 6 MD5 | 38 NAMESPACE | 9 NEWS.md | 14 R/Functions.R | 1699 ++++++++++++++---------- R/PPPModel.R |only R/ValidationFunctions.R |only README.md | 12 inst/doc/Pareto.R | 27 inst/doc/Pareto.Rmd | 63 inst/doc/Pareto.html | 122 + man/PPP_Model.Rd |only man/PPP_Model_Excess_Frequency.Rd |only man/PPP_Model_Exp_Layer_Loss.Rd |only man/PPP_Model_Layer_Sd.Rd |only man/PPP_Model_Layer_Var.Rd |only man/PPP_Model_Simulate.Rd |only man/PiecewisePareto_Match_Layer_Losses.Rd | 23 man/is.PPP_Model.Rd |only man/is.valid.PPP_Model.Rd |only man/print.PPP_Model.Rd |only man/rPareto.Rd | 4 tests/testthat/test_functions_PPP_Model.R |only tests/testthat/test_functions_Pareto.R | 6 tests/testthat/test_functions_PiecewisePareto.R | 2 vignettes/Pareto.Rmd | 63 26 files changed, 1385 insertions(+), 703 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-22 2.5-1
2016-03-20 2.5-0
2014-04-29 2.4-1
2013-07-22 2.3-2
2013-05-24 2.3-0
2013-04-07 2.2-1
2012-12-20 2.1-1
2012-06-07 1.7-0
2012-05-05 1.6-0
2012-04-19 1.5-1
2011-10-20 1.3-2
2011-07-18 1.3-1
2011-05-08 1.3-0
2011-01-27 1.2-1
2011-01-20 1.2-0
2010-10-15 1.1-0
2010-10-07 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-26 8.1-1
2018-10-12 7.0-0
2018-03-16 6.2-4
2017-10-23 6.2-3
2017-10-11 6.2-2
2017-09-30 6.2-1
2017-08-12 6.1-1
2017-02-10 6.0-4
2016-11-30 6.0-3
2016-11-22 6.0-2
2016-01-29 6.0-1
2016-01-16 6.0-0
2015-07-18 5.4-0
2015-04-10 5.3-4
2015-02-05 5.2-2
2014-11-20 5.2-1
2014-08-13 5.1-5
2014-04-28 5.0-0
2014-04-04 4.3-0
2013-12-03 4.2-2
2013-10-10 4.2-1
2013-07-22 4.1-1
2013-05-24 4.0-1
2013-04-11 3.2-3
2013-01-05 3.1-10
2012-12-17 3.1-8
2012-06-07 2.0-2
2012-04-19 0.2-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-02 2.2-0
2019-09-28 2.1-2
2019-06-11 2.1-1
2019-03-19 2.0-1
2018-09-22 1.2-1
2018-05-26 1.2-0
2017-12-18 1.1-1
2017-11-30 1.0-1
Title: Compute Effect Sizes of the Difference
Description: Computes various effect sizes of the difference, their variance, and confidence interval. This package treats Cohen's d, Hedges' d, biased/unbiased c (an effect size between a mean and a constant) and e (an effect size between means without assuming the variance equality).
Author: Satoshi Aoki
Maintainer: Satoshi Aoki <aokis1ll1@gmail.com>
Diff between es.dif versions 1.0.1 dated 2019-06-07 and 1.0.2 dated 2020-05-02
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- man/es.c.Rd | 2 ++ man/es.d.Rd | 2 ++ man/es.e.Rd | 2 ++ man/es.para.c.Rd | 2 ++ man/es.para.d.Rd | 2 ++ man/es.para.e.Rd | 2 ++ 8 files changed, 23 insertions(+), 11 deletions(-)
Title: Biterm Topic Models for Short Text
Description: Biterm Topic Models find topics in collections of short texts.
It is a word co-occurrence based topic model that learns topics by modeling word-word co-occurrences patterns which are called biterms.
This in contrast to traditional topic models like Latent Dirichlet Allocation and Probabilistic Latent Semantic Analysis
which are word-document co-occurrence topic models.
A biterm consists of two words co-occurring in the same short text window.
This context window can for example be a twitter message, a short answer on a survey, a sentence of a text or a document identifier.
The techniques are explained in detail in the paper 'A Biterm Topic Model For Short Text' by Xiaohui Yan, Jiafeng Guo, Yanyan Lan, Xueqi Cheng (2013) <https://github.com/xiaohuiyan/xiaohuiyan.github.io/blob/master/paper/BTM-WWW13.pdf>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Xiaohui Yan [ctb, cph] (BTM C++ library)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between BTM versions 0.3 dated 2020-03-15 and 0.3.1 dated 2020-05-02
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/btm.R | 51 ++++++++++++++++++++++++++++++++++++++++++++++----- man/BTM.Rd | 43 ++++++++++++++++++++++++++++++++++++++++--- man/logLik.BTM.Rd | 5 ++--- man/predict.BTM.Rd | 3 +-- man/terms.BTM.Rd | 3 +-- 8 files changed, 106 insertions(+), 26 deletions(-)
Title: Truncated Multivariate Normal and Student Distributions
Description: A collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Author: Zdravko Botev [aut] (<https://orcid.org/0000-0001-9054-3452>),
Leo Belzile [aut, cre] (<https://orcid.org/0000-0002-9135-014X>)
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between TruncatedNormal versions 2.1 dated 2019-08-31 and 2.1.2 dated 2020-05-02
DESCRIPTION | 11 - MD5 | 41 ++-- NEWS | 6 R/datasets.R |only R/mvrandt.R | 2 R/tmvnorm.R | 4 R/tmvt.R | 4 build/vignette.rds |binary data/mroz.rda |only inst/doc/TruncatedNormal_vignette.R | 26 +-- inst/doc/TruncatedNormal_vignette.Rmd | 10 - inst/doc/TruncatedNormal_vignette.html | 273 ++++++++++++++++----------------- man/dtmvnorm.Rd | 3 man/dtmvt.Rd | 5 man/lupus.Rd | 37 +--- man/mroz.Rd |only man/pmvnorm.Rd | 13 + man/pmvt.Rd | 14 + man/ptmvnorm.Rd | 3 man/ptmvt.Rd | 5 man/tmvnorm.Rd | 2 man/tmvt.Rd | 4 vignettes/TruncatedNormal_vignette.Rmd | 10 - 23 files changed, 231 insertions(+), 242 deletions(-)
More information about TruncatedNormal at CRAN
Permanent link
Title: Estimation and Projection of Age-Specific Mortality Rates
Description: Age-specific mortality rates are estimated and projected using
the Kannisto, Lee-Carter and related methods as described in
Sevcikova et al. (2016) <doi:10.1007/978-3-319-26603-9_15>.
Author: Hana Sevcikova, Nan Li and Patrick Gerland
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between MortCast versions 2.1-2 dated 2019-09-28 and 2.2-0 dated 2020-05-02
ChangeLog | 4 + DESCRIPTION | 10 +-- MD5 | 38 ++++++------ R/LC.R | 100 ++++++++++++++++++++++---------- R/MortCast.R | 2 R/life_table.R | 21 +++++- R/other_methods.R | 3 build/partial.rdb |binary man/MortCast-package.Rd | 2 man/cokannisto.Rd | 8 +- man/kannisto.Rd | 3 man/leecarter.estimate.Rd | 15 +++- man/life.table.Rd | 32 ++++++++-- man/lileecarter.estimate.Rd | 9 +- man/lqgroup.Rd | 10 ++- man/mortcast.Rd | 46 +++++++++++--- man/mortcast.blend.Rd | 15 +++- man/pmdgroup.Rd | 11 ++- src/init.c | 8 +- src/life_tables.c | 137 ++++++++++++++++++++++++++------------------ 20 files changed, 320 insertions(+), 154 deletions(-)
Title: Multivariate Multinomial Distribution Approximation and
Imputation for Incomplete Categorical Data
Description: A method to impute the missingness in categorical data. Details see the paper <doi:10.4310/SII.2020.v13.n1.a2>.
Author: Chaojie Wang
Maintainer: Chaojie Wang <wang910930@163.com>
Diff between MMDai versions 1.4.0 dated 2017-12-07 and 2.0.0 dated 2020-05-02
DESCRIPTION | 26 ++++++------------ MD5 | 26 +++++++++--------- NAMESPACE | 18 ++++++------ R/GenerateData.R | 1 R/InitialPsi.R | 1 R/ParEst.R | 1 R/kIdentifier.R | 3 +- R/rdirichlet.R |only man/GenerateData.Rd | 74 ++++++++++++++++++++++++++++------------------------ man/Imputation.Rd | 42 ++++++++++++++--------------- man/InitialPsi.Rd | 42 ++++++++++++++--------------- man/MovieRate.Rd | 30 ++++++++++----------- man/ParEst.Rd | 74 ++++++++++++++++++++++++++-------------------------- man/kIdentifier.Rd | 72 +++++++++++++++++++++++++------------------------- man/rdirichlet.Rd |only 15 files changed, 204 insertions(+), 206 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-20 0.9.4
2020-03-30 0.9.3
2020-03-21 0.9.2
2020-01-30 0.9.1
2019-12-13 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-03 1.7.5.3
2018-11-29 1.7.5.2
2018-03-05 1.7.5.1
2018-03-03 1.7.5
2017-11-01 1.7.4.1
2017-06-06 1.7.4
2017-04-25 1.7.3
2016-11-24 1.7.2
2016-10-14 1.7.1
2016-09-19 1.6.2.1
2016-08-11 1.6.2
2016-04-04 1.6.1
2016-01-10 1.6
2015-12-01 1.5.0.1
2015-10-01 1.5
2014-09-07 1.4.1
2014-09-06 1.4
2014-04-10 1.3.1
2014-04-07 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-27 0.3.4