Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-28 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-15 0.4
2018-01-12 0.3.1
2017-12-01 0.3
Title: Total Operating Characteristic Curve and ROC Curve
Description: Construction of the Total Operating Characteristic (TOC) Curve and the Receiver (aka Relative) Operating Characteristic (ROC) Curve for spatial and non-spatial data. The TOC method is a modification of the ROC method which measures the ability of an index variable to diagnose either presence or absence of a characteristic. The diagnosis depends on whether the value of an index variable is above a threshold. Each threshold generates a two-by-two contingency table, which contains four entries: hits (H), misses (M), false alarms (FA), and correct rejections (CR). While ROC shows for each threshold only two ratios, H/(H + M) and FA/(FA + CR), TOC reveals the size of every entry in the contingency table for each threshold (Pontius Jr., R.G., Si, K. 2014. <doi:10.1080/13658816.2013.862623>).
Author: Robert G. Pontius <rpontius@clarku.edu>, Ali Santacruz, Amin Tayyebi, Benoit Parmentier, Kangping Si
Maintainer: Ali Santacruz <amsantac@unal.edu.co>
Diff between TOC versions 0.0-4 dated 2015-12-29 and 0.0-5 dated 2020-05-06
TOC-0.0-4/TOC/inst/external/Prob_Map2.RDC |only TOC-0.0-5/TOC/DESCRIPTION | 22 +-- TOC-0.0-5/TOC/MD5 | 12 - TOC-0.0-5/TOC/inst/external/Prob_Map2.rdc |only TOC-0.0-5/TOC/man/ROC.Rd | 178 +++++++++++++------------- TOC-0.0-5/TOC/man/TOC-package.Rd | 64 ++++----- TOC-0.0-5/TOC/man/TOC.Rd | 198 +++++++++++++++--------------- TOC-0.0-5/TOC/man/plot.Rd | 166 ++++++++++++------------- 8 files changed, 320 insertions(+), 320 deletions(-)
Title: Input Output Analysis
Description: Calculates fundamental IO matrices (Leontief, Wassily W. (1951) <doi:10.1038/scientificamerican1051-15>); within period analysis via various rankings and coefficients (Sonis and Hewings (2006) <doi:10.1080/09535319200000013>, Blair and Miller (2009) <ISBN:978-0-521-73902-3>, Antras et al (2012) <doi:10.3386/w17819>, Hummels, Ishii, and Yi (2001) <doi:10.1016/S0022-1996(00)00093-3>); across period analysis with impact analysis (Dietzenbacher, van der Linden, and Steenge (2006) <doi:10.1080/09535319300000017>, Sonis, Hewings, and Guo (2006) <doi:10.1080/09535319600000002>); and a variety of table operators.
Author: John Wade [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: John Wade <jjpwade2@illinois.edu>
Diff between ioanalysis versions 0.2.2 dated 2020-03-30 and 0.3.0 dated 2020-05-06
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 4 +++- R/agg.region.R | 17 ++++++++++++++--- R/agg.sector.R | 15 +++++++++++++-- R/check.RS.R | 2 +- R/feedback.loop.R |only man/agg.region.Rd | 2 +- man/agg.sector.Rd | 2 +- man/feedback.loop.Rd |only 10 files changed, 46 insertions(+), 20 deletions(-)
Title: Apply Functions to Blocks of Files
Description: Read and process a large delimited file block by
block. A block consists of all the contiguous rows that have the same value
in the first field. The result can be returned as a list or a data.table,
or even directly printed to an output file.
Author: Federico Marotta [aut, cre] (<https://orcid.org/0000-0002-0174-3901>)
Maintainer: Federico Marotta <federicomarotta@mail.com>
Diff between fplyr versions 1.1.0 dated 2020-03-16 and 1.2.0 dated 2020-05-06
fplyr-1.1.0/fplyr/tests/testthat/test_ffply.R |only fplyr-1.2.0/fplyr/DESCRIPTION | 15 +++-- fplyr-1.2.0/fplyr/MD5 | 35 +++++++----- fplyr-1.2.0/fplyr/NAMESPACE | 1 fplyr-1.2.0/fplyr/R/fdply.R | 18 ++---- fplyr-1.2.0/fplyr/R/ffply.R | 7 +- fplyr-1.2.0/fplyr/R/flply.R | 22 +++++-- fplyr-1.2.0/fplyr/R/fmply.R | 7 +- fplyr-1.2.0/fplyr/R/ftply.R |only fplyr-1.2.0/fplyr/R/utils.R | 35 ++++-------- fplyr-1.2.0/fplyr/build |only fplyr-1.2.0/fplyr/inst/doc |only fplyr-1.2.0/fplyr/man/fdply.Rd | 13 +--- fplyr-1.2.0/fplyr/man/ffply.Rd | 3 + fplyr-1.2.0/fplyr/man/flply.Rd | 5 + fplyr-1.2.0/fplyr/man/fmply.Rd | 3 + fplyr-1.2.0/fplyr/man/ftply.Rd |only fplyr-1.2.0/fplyr/tests/testthat/test_errors.R |only fplyr-1.2.0/fplyr/tests/testthat/test_flply.R | 71 +++++++++++++++++++++++-- fplyr-1.2.0/fplyr/tests/testthat/test_ftply.R |only fplyr-1.2.0/fplyr/tests/testthat/test_utils.R |only fplyr-1.2.0/fplyr/vignettes |only 22 files changed, 154 insertions(+), 81 deletions(-)
Title: Data Package 'Frictionless Data'
Description: Work with 'Frictionless Data Packages' (<https://frictionlessdata.io/specs/data-package/>). Allows to load and validate any descriptor for a data package profile, create and modify descriptors and provides expose methods for reading and streaming data in the package. When a descriptor is a 'Tabular Data Package', it uses the 'Table Schema' package (<https://CRAN.R-project.org/package=tableschema.r>) and exposes its functionality, for each resource object in the resources field.
Author: Kleanthis Koupidis [aut, cre],
Lazaros Ioannidis [aut],
Charalampos Bratsas [aut],
Open Knowledge International [cph]
Maintainer: Kleanthis Koupidis <koupidis@okfn.gr>
Diff between datapackage.r versions 1.3.0 dated 2020-03-11 and 1.3.1 dated 2020-05-06
DESCRIPTION | 10 MD5 | 88 NAMESPACE | 2 NEWS.md | 4 README.md | 985 ++-- inst/doc/creating_data_packages_in_r.Rmd | 4 inst/doc/creating_data_packages_in_r.html | 132 inst/doc/using_data_packages_in_r.Rmd.html | 106 inst/profiles/fiscal-data-package.json | 4 inst/profiles/tabular-data-package.json | 4 inst/profiles/tabular-data-resource.json | 3884 ++++++++-------- man/BinaryReadable.Rd | 7 man/BinaryReadableConnection.Rd | 7 man/DataPackageError.Rd | 6 man/Package.Rd | 12 man/Profile.Rd | 7 man/Profile.load.Rd | 32 man/Resource.Rd | 14 man/dereferencePackageDescriptor.Rd | 30 man/dereferenceResourceDescriptor.Rd | 34 man/descriptor.pointer.Rd | 30 man/expandPackageDescriptor.Rd | 26 man/expandResourceDescriptor.Rd | 26 man/file_basename.Rd | 26 man/file_extensions.Rd | 26 man/findFiles.Rd | 30 man/helpers.from.json.to.list.Rd | 26 man/helpers.from.list.to.json.Rd | 26 man/infer.Rd | 50 man/is.compressed.Rd | 32 man/is.empty.Rd | 32 man/is.git.Rd | 32 man/is.json.Rd | 32 man/isRemotePath.Rd | 32 man/isSafePath.Rd | 32 man/isUndefined.Rd | 32 man/locateDescriptor.Rd | 26 man/push.Rd | 30 man/retrieveDescriptor.Rd | 26 man/write.json.Rd | 30 tests/testthat/inst/profiles/fiscal-data-package.json | 4 tests/testthat/inst/profiles/tabular-data-package.json | 4 tests/testthat/inst/profiles/tabular-data-resource.json | 3884 ++++++++-------- vignettes/creating_data_packages_in_r.Rmd | 4 vignettes/exampledata/package.json | 40 45 files changed, 5081 insertions(+), 4829 deletions(-)
Title: IR-Tree Modeling in 'mirt', 'Mplus', or 'TAM'
Description: Item response tree (IR-tree) models are a class of item response
theory (IRT) models that assume that the responses to polytomous items can
best be explained by multiple psychological processes; see Böckenholt
(2012) <doi:10.1037/a0028111> for details. The package
'ItemResponseTrees' allows to fit such IR-tree models in 'mirt', 'Mplus', or
'TAM'. The package automates some of the hassle of IR-tree modeling by means
of a consistent syntax. This allows new users to quickly adopt this model
class, and this allows experienced users to fit many complex models
effortlessly.
Author: Hansjörg Plieninger [aut, cre]
(<https://orcid.org/0000-0002-4416-300X>)
Maintainer: Hansjörg Plieninger <mail@hansjoerg.me>
Diff between ItemResponseTrees versions 0.2.4 dated 2020-04-24 and 0.2.5 dated 2020-05-06
ItemResponseTrees-0.2.4/ItemResponseTrees/R/0_imports.R |only ItemResponseTrees-0.2.4/ItemResponseTrees/vignettes/tools |only ItemResponseTrees-0.2.5/ItemResponseTrees/DESCRIPTION | 17 ItemResponseTrees-0.2.5/ItemResponseTrees/MD5 | 41 - ItemResponseTrees-0.2.5/ItemResponseTrees/NEWS.md | 10 ItemResponseTrees-0.2.5/ItemResponseTrees/R/tidiers.R | 35 - ItemResponseTrees-0.2.5/ItemResponseTrees/README.md | 302 +--------- ItemResponseTrees-0.2.5/ItemResponseTrees/build/vignette.rds |binary ItemResponseTrees-0.2.5/ItemResponseTrees/inst/CITATION | 2 ItemResponseTrees-0.2.5/ItemResponseTrees/inst/WORDLIST | 2 ItemResponseTrees-0.2.5/ItemResponseTrees/inst/doc/ItemResponseTrees-Getting-started-with-IR-trees.R | 17 ItemResponseTrees-0.2.5/ItemResponseTrees/inst/doc/ItemResponseTrees-Getting-started-with-IR-trees.Rmd | 43 - ItemResponseTrees-0.2.5/ItemResponseTrees/inst/doc/ItemResponseTrees-Getting-started-with-IR-trees.html | 274 ++++----- ItemResponseTrees-0.2.5/ItemResponseTrees/man/augment.irtree_fit.Rd | 11 ItemResponseTrees-0.2.5/ItemResponseTrees/man/tidy.irtree_fit.Rd | 2 ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat.R | 2 ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat/test-constraints.R | 62 +- ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat/test-fit-mirt.R | 46 + ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat/test-fit-mplus.R | 36 - ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat/test-fit-tam.R | 19 ItemResponseTrees-0.2.5/ItemResponseTrees/tests/testthat/test-simulation.R | 81 +- ItemResponseTrees-0.2.5/ItemResponseTrees/tools/ItemResponseTrees.png |only ItemResponseTrees-0.2.5/ItemResponseTrees/vignettes/ItemResponseTrees-Getting-started-with-IR-trees.Rmd | 43 - 23 files changed, 425 insertions(+), 620 deletions(-)
More information about ItemResponseTrees at CRAN
Permanent link
Title: Analyzing Remotely Sensed Forest Data
Description: Provides tools for analyzing remotely sensed forest data, including functions for detecting treetops from canopy models (Popescu & Wynne, 2004), outlining tree crowns (Meyer & Beucher, 1990) and generating spatial statistics.
Author: Andrew Plowright, Jean-Romain Roussel
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 0.2.0 dated 2018-04-04 and 0.2.1 dated 2020-05-06
DESCRIPTION | 21 - MD5 | 78 +++-- NAMESPACE | 3 NEWS.md | 18 + R/CHMdemo.R | 1 R/Kootenay.R | 24 + R/glcm.R |only R/mwcs.R | 9 R/vwf.R | 72 +++-- R/zzz.R | 5 README.md |only build/vignette.rds |binary data/datalist | 1 data/kootenayCrowns.rda |binary data/kootenayOrtho.rda |only data/kootenayTrees.rda |binary inst/doc/inventoryAttributes.R | 16 - inst/doc/inventoryAttributes.html | 428 ++++++++++++++++++++++++------- inst/doc/polygonalCrownMaps.R | 6 inst/doc/polygonalCrownMaps.Rmd | 2 inst/doc/polygonalCrownMaps.html | 348 +++++++++++++++++++++---- inst/doc/treetopAnalysis.R | 50 +-- inst/doc/treetopAnalysis.Rmd | 2 inst/doc/treetopAnalysis.html | 522 +++++++++++++++++++++++++++----------- man/CHMdemo.Rd | 6 man/ForestTools.Rd | 27 - man/glcm.Rd |only man/kootenayBlocks.Rd | 50 +-- man/kootenayCHM.Rd | 48 +-- man/kootenayCrowns.Rd | 46 +-- man/kootenayOrtho.Rd |only man/kootenayTrees.Rd | 52 +-- man/mcws.Rd | 158 +++++------ man/quesnelBlocks.Rd | 50 +-- man/quesnelCHM.Rd | 48 +-- man/quesnelTrees.Rd | 52 +-- man/sp_summarise.Rd | 203 +++++++------- man/vwf.Rd | 126 ++++----- tests/testthat/test_glcm.R |only tests/testthat/test_mcws.R | 16 - tests/testthat/test_vwf.R | 42 --- vignettes/polygonalCrownMaps.Rmd | 2 vignettes/treetopAnalysis.Rmd | 2 43 files changed, 1650 insertions(+), 884 deletions(-)
More information about dashHtmlComponents at CRAN
Permanent link
More information about dashCoreComponents at CRAN
Permanent link
Title: Bayesian Adaptive Spline Surfaces
Description: Bayesian fitting and sensitivity analysis methods for adaptive
spline surfaces. Built to handle continuous and categorical inputs as well as
functional or scalar output. An extension of the methodology in Denison, Mallick
and Smith (1998) <doi:10.1023/A:1008824606259>.
Author: Devin Francom [aut, cre],
Bruno Sanso [ths]
Maintainer: Devin Francom <devinfrancom@gmail.com>
Diff between BASS versions 0.2.2 dated 2017-03-17 and 1.2.0 dated 2020-05-06
BASS-0.2.2/BASS/R/sobol.R |only BASS-0.2.2/BASS/R/urn2.R |only BASS-0.2.2/BASS/inst/doc/article2-vignette.R |only BASS-0.2.2/BASS/inst/doc/article2-vignette.Rnw |only BASS-0.2.2/BASS/inst/doc/article2-vignette.pdf |only BASS-0.2.2/BASS/src |only BASS-0.2.2/BASS/vignettes/article2-vignette.Rnw |only BASS-1.2.0/BASS/DESCRIPTION | 22 ++-- BASS-1.2.0/BASS/MD5 | 130 +++++++++++++++--------- BASS-1.2.0/BASS/NAMESPACE | 10 + BASS-1.2.0/BASS/NEWS.md | 25 ++++ BASS-1.2.0/BASS/R/basis_funcs.R | 18 ++- BASS-1.2.0/BASS/R/bass.R | 85 +++++++++------ BASS-1.2.0/BASS/R/bassPCA.R |only BASS-1.2.0/BASS/R/generics.R | 78 ++++++++++++-- BASS-1.2.0/BASS/R/mcmc_funcs.R | 32 ++++- BASS-1.2.0/BASS/R/mcmc_update.R | 73 ++++++++++--- BASS-1.2.0/BASS/R/misc.R | 33 +++++- BASS-1.2.0/BASS/R/plot.R | 61 ++++++++++- BASS-1.2.0/BASS/R/predict.R | 94 +++++++++++++++-- BASS-1.2.0/BASS/R/rjmcmc_all.R | 74 +++++++++++++ BASS-1.2.0/BASS/R/rjmcmc_cat.R | 17 ++- BASS-1.2.0/BASS/R/rjmcmc_cat_func.R | 15 ++ BASS-1.2.0/BASS/R/rjmcmc_des.R | 14 ++ BASS-1.2.0/BASS/R/rjmcmc_des_cat.R | 37 ++++-- BASS-1.2.0/BASS/R/rjmcmc_des_cat_func.R | 23 ++-- BASS-1.2.0/BASS/R/rjmcmc_des_func.R | 13 +- BASS-1.2.0/BASS/R/sobol_normTmix.R |only BASS-1.2.0/BASS/README.md |only BASS-1.2.0/BASS/build/vignette.rds |binary BASS-1.2.0/BASS/inst/doc/article4.R |only BASS-1.2.0/BASS/inst/doc/article4.Rnw |only BASS-1.2.0/BASS/inst/doc/article4.pdf |only BASS-1.2.0/BASS/inst/examples.R |only BASS-1.2.0/BASS/inst/examplesPCA.R |only BASS-1.2.0/BASS/inst/testf1.R |only BASS-1.2.0/BASS/inst/testf2.R |only BASS-1.2.0/BASS/inst/testf3.R |only BASS-1.2.0/BASS/inst/testf4.R |only BASS-1.2.0/BASS/inst/testf5.R |only BASS-1.2.0/BASS/man/bass.Rd | 47 +++++++- BASS-1.2.0/BASS/man/bassBasis.Rd |only BASS-1.2.0/BASS/man/bassPCA.Rd |only BASS-1.2.0/BASS/man/plot.bassBasis.Rd |only BASS-1.2.0/BASS/man/predict.bass.Rd | 10 + BASS-1.2.0/BASS/man/predict.bassBasis.Rd |only BASS-1.2.0/BASS/man/print.bassBasis.Rd |only BASS-1.2.0/BASS/man/sobol.Rd | 20 +++ BASS-1.2.0/BASS/man/sobolBasis.Rd |only BASS-1.2.0/BASS/man/summary.bassBasis.Rd |only BASS-1.2.0/BASS/tests |only BASS-1.2.0/BASS/vignettes/article4.Rnw |only BASS-1.2.0/BASS/vignettes/bibl.bib | 44 +++++--- BASS-1.2.0/BASS/vignettes/child/ex1-2.Rnw | 14 +- BASS-1.2.0/BASS/vignettes/child/ex2-2.Rnw | 49 +++++++-- BASS-1.2.0/BASS/vignettes/child/ex3-2.Rnw | 12 +- BASS-1.2.0/BASS/vignettes/child/ex4-2.Rnw | 116 +++++++++++++++++++-- BASS-1.2.0/BASS/vignettes/child/ex5-2.Rnw | 21 ++- BASS-1.2.0/BASS/vignettes/child/ex6-2.Rnw | 65 +++++++----- 59 files changed, 962 insertions(+), 290 deletions(-)
Title: Database Agnostic Package to Generate and Process 'SQL' Queries
in R
Description: Allows the user to generate and execute select, insert, update and delete 'SQL' queries the underlying database without having to explicitly write 'SQL' code.
Author: Alejandro Baranek [cre, aut],
Leonardo Belen [aut]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between RSQL versions 0.1.1 dated 2020-02-05 and 0.1.3 dated 2020-05-06
RSQL-0.1.1/RSQL/R/dev |only RSQL-0.1.1/RSQL/man/rsql.Rd |only RSQL-0.1.3/RSQL/DESCRIPTION | 14 ++++++------- RSQL-0.1.3/RSQL/MD5 | 21 ++++++++++--------- RSQL-0.1.3/RSQL/NAMESPACE | 1 RSQL-0.1.3/RSQL/NEWS.md |only RSQL-0.1.3/RSQL/R/sql-lib.R | 28 +++++++++++++++----------- RSQL-0.1.3/RSQL/README.md |only RSQL-0.1.3/RSQL/build/vignette.rds |binary RSQL-0.1.3/RSQL/man/RSQL.Rd |only RSQL-0.1.3/RSQL/man/RSQL.class.Rd | 17 +++++++++++++++ RSQL-0.1.3/RSQL/man/is_quoted.Rd | 2 - RSQL-0.1.3/RSQL/man/re_quote.Rd | 6 +++-- RSQL-0.1.3/RSQL/tests/testthat/test_sql_lib.R | 11 +++++++++- 14 files changed, 68 insertions(+), 32 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.9.3 dated 2020-02-10 and 0.10.0 dated 2020-05-06
renv-0.10.0/renv/DESCRIPTION | 10 renv-0.10.0/renv/MD5 | 277 ++- renv-0.10.0/renv/NAMESPACE | 4 renv-0.10.0/renv/NEWS.md | 113 + renv-0.10.0/renv/R/R.R | 35 renv-0.10.0/renv/R/actions.R | 2 renv-0.10.0/renv/R/activate.R | 2 renv-0.10.0/renv/R/available-packages.R | 48 renv-0.10.0/renv/R/bootstrap.R | 328 +++- renv-0.10.0/renv/R/cache.R | 60 renv-0.10.0/renv/R/cite.R |only renv-0.10.0/renv/R/clean.R | 56 renv-0.10.0/renv/R/condition.R | 4 renv-0.10.0/renv/R/config-defaults.R |only renv-0.10.0/renv/R/config.R | 188 -- renv-0.10.0/renv/R/consent.R | 1 renv-0.10.0/renv/R/dependencies.R | 312 +++- renv-0.10.0/renv/R/description.R | 34 renv-0.10.0/renv/R/diagnostics.R | 14 renv-0.10.0/renv/R/dots.R | 10 renv-0.10.0/renv/R/download.R | 186 ++ renv-0.10.0/renv/R/errors.R | 66 renv-0.10.0/renv/R/extsoft.R | 61 renv-0.10.0/renv/R/file-backed.R | 4 renv-0.10.0/renv/R/files.R | 2 renv-0.10.0/renv/R/history.R | 2 renv-0.10.0/renv/R/hydrate.R | 19 renv-0.10.0/renv/R/id.R |only renv-0.10.0/renv/R/imbue.R |only renv-0.10.0/renv/R/imports.R | 7 renv-0.10.0/renv/R/init.R | 103 - 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Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by
providing a high level interface to writing, styling and editing
worksheets. Through the use of 'Rcpp', read/write times are comparable
to the 'xlsx' and 'XLConnect' packages with the added benefit of
removing the dependency on Java.
Author: Philipp Schauberger [aut, cre],
Alexander Walker [aut],
Luca Braglia [ctb]
Maintainer: Philipp Schauberger <philipp@schauberger.co.at>
Diff between openxlsx versions 4.1.4 dated 2019-12-06 and 4.1.5 dated 2020-05-06
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openxlsx-4.1.5/openxlsx/tests/testthat/test-cloneWorksheet.R |only openxlsx-4.1.5/openxlsx/tests/testthat/test-date_time_conversion.R | 28 openxlsx-4.1.5/openxlsx/tests/testthat/test-deleting_tables.R | 189 openxlsx-4.1.5/openxlsx/tests/testthat/test-encoding.R | 27 openxlsx-4.1.5/openxlsx/tests/testthat/test-fill_merged_cells.R | 12 openxlsx-4.1.5/openxlsx/tests/testthat/test-freeze_pane.R | 86 openxlsx-4.1.5/openxlsx/tests/testthat/test-getCellRefs.R | 33 openxlsx-4.1.5/openxlsx/tests/testthat/test-load_read_file_read_equality.R | 32 openxlsx-4.1.5/openxlsx/tests/testthat/test-loading_workbook.R | 1642 ++-- openxlsx-4.1.5/openxlsx/tests/testthat/test-loading_workbook_tables.R | 23 openxlsx-4.1.5/openxlsx/tests/testthat/test-loading_workbook_unzipped.R | 13 openxlsx-4.1.5/openxlsx/tests/testthat/test-named_regions.R | 290 openxlsx-4.1.5/openxlsx/tests/testthat/test-page_setup.R | 36 openxlsx-4.1.5/openxlsx/tests/testthat/test-protect-workbook.R | 4 openxlsx-4.1.5/openxlsx/tests/testthat/test-protect-worksheet.R | 11 openxlsx-4.1.5/openxlsx/tests/testthat/test-read_from_created_wb.R | 358 openxlsx-4.1.5/openxlsx/tests/testthat/test-read_from_loaded_workbook.R | 177 openxlsx-4.1.5/openxlsx/tests/testthat/test-read_sources.R | 53 openxlsx-4.1.5/openxlsx/tests/testthat/test-read_write_logicals.R | 40 openxlsx-4.1.5/openxlsx/tests/testthat/test-read_xlsx_correct_sheet.R | 37 openxlsx-4.1.5/openxlsx/tests/testthat/test-remove_worksheets.R | 64 openxlsx-4.1.5/openxlsx/tests/testthat/test-skip_empty_cols.R | 218 openxlsx-4.1.5/openxlsx/tests/testthat/test-skip_empty_rows.R | 253 openxlsx-4.1.5/openxlsx/tests/testthat/test-style_replacing.R | 18 openxlsx-4.1.5/openxlsx/tests/testthat/test-table_overlaps.R | 77 openxlsx-4.1.5/openxlsx/tests/testthat/test-trying_to_break_openxlsx.R | 380 - 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Title: Bayesian Latent Class Analysis
Description: Bayesian Latent Class Analysis using several different
methods.
Author: Arthur White [aut, cre] (Previous email address:
arthur.white@ucdconnect.ie),
Thomas Brendan Murphy [aut, ths]
Maintainer: Arthur White <arwhite@tcd.ie>
Diff between BayesLCA versions 1.8 dated 2020-02-17 and 1.9 dated 2020-05-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/as.mcmc.blca.gibbs.Rd | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-04 1.4-0
2015-07-02 1.3-0
2013-10-08 1.0-2
2012-03-23 1.0-0
Title: Load Data From 'Yandex Direct'
Description: Load data from 'Yandex Direct' API V5
<https://tech.yandex.ru/direct/doc/dg/concepts/about-docpage/> into R.
Provide function for load lists of campaings, ads, keywords and other
objects from 'Yandex Direct' account. Also you can load statistic from
API 'Reports Service' <https://tech.yandex.ru/direct/doc/reports/reports-docpage/>.
And allows keyword bids management.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ryandexdirect versions 3.2.2 dated 2019-10-31 and 3.5.0 dated 2020-05-06
DESCRIPTION | 10 MD5 | 133 ++--- NAMESPACE | 11 NEWS.md | 37 + R/methods.R |only R/tech_block.R | 32 + R/yadirAuth.R | 13 R/yadirCurrencyRates.R | 6 R/yadirGetAdGroups.R | 14 R/yadirGetAds.R | 332 ++++++------- R/yadirGetBalance.R | 6 R/yadirGetCampaign.R | 6 R/yadirGetCampaignList.R | 6 R/yadirGetClientList.R | 4 R/yadirGetClientParam.R | 6 R/yadirGetDictionary.R | 6 R/yadirGetForecast.R |only R/yadirGetKeyWords.R | 16 R/yadirGetKeyWordsBids.R | 438 ++++++++--------- R/yadirGetLogins.R |only R/yadirGetReport.R | 6 R/yadirGetReportFun.R | 6 R/yadirGetSiteLinks.R | 6 R/yadirGetToken.R | 2 R/yadirGetWordStatReport.R |only R/yadirSetAgencyAccount.R |only R/yadirSetAutoKeyWordsBids.R | 554 +++++++++++----------- R/yadirSetKeyWordsBids.R | 440 ++++++++--------- R/yadirSetLogin.R |only R/yadirStartAds.R | 6 R/yadirStartCampaigns.R | 6 R/yadirStartKeyWords.R | 6 R/yadirStopAds.R | 6 R/yadirStopCampaigns.R | 6 R/yadirStopKeyWords.R | 6 R/zzz.R | 44 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/yandex-direct-auth.R | 2 inst/doc/yandex-direct-auth.html | 37 - inst/doc/yandex-direct-get-statistic.R | 10 inst/doc/yandex-direct-get-statistic.html | 39 - inst/doc/yandex-direct-get-wordstat-forecast.R |only inst/doc/yandex-direct-get-wordstat-forecast.Rmd |only inst/doc/yandex-direct-get-wordstat-forecast.html |only inst/doc/yandex-direct-keyword-bids.R | 16 inst/doc/yandex-direct-keyword-bids.html | 59 +- man/yadirAuth.Rd | 4 man/yadirCurrencyRates.Rd | 7 man/yadirGetAdGroups.Rd | 6 man/yadirGetAds.Rd | 6 man/yadirGetBalance.Rd | 6 man/yadirGetCampaign.Rd | 16 man/yadirGetClientList.Rd | 5 man/yadirGetClientParam.Rd | 6 man/yadirGetDictionary.Rd | 10 man/yadirGetForecast.Rd |only man/yadirGetKeyWords.Rd | 7 man/yadirGetKeyWordsBids.Rd | 21 man/yadirGetLogins.Rd |only man/yadirGetReport.Rd | 5 man/yadirGetSiteLinks.Rd | 11 man/yadirGetToken.Rd | 2 man/yadirGetWordStatReport.Rd |only man/yadirSetAgencyAccount.Rd |only man/yadirSetAutoKeyWordsBids.Rd | 6 man/yadirSetKeyWordsBids.Rd | 6 man/yadirSetLogin.Rd |only man/yadirStartAds.Rd | 6 man/yadirStartCampaigns.Rd | 6 man/yadirStartKeyWords.Rd | 6 man/yadirStopAds.Rd | 5 man/yadirStopCampaigns.Rd | 7 man/yadirStopKeyWords.Rd | 6 vignettes/yandex-direct-get-wordstat-forecast.Rmd |only 75 files changed, 1335 insertions(+), 1158 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev <selesnow@gmail.com>
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.0.2 dated 2020-03-24 and 2.0.3 dated 2020-05-06
DESCRIPTION | 8 - MD5 | 14 - NEWS.md | 10 + R/fbParsers.R | 20 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-authorization.html | 42 ++--- inst/doc/rfacebookstat-get-statistics.html | 222 ++++++++++++++--------------- 8 files changed, 168 insertions(+), 148 deletions(-)
Title: Utilities for Fundamental Geo-Spatial Data
Description: Read and Parse for Fundamental Geo-Spatial Data (FGD) which downloads XML file
from providing site (<https://fgd.gsi.go.jp/download/menu.php>). The JPGIS format file
provided by FGD so that it can be handled as an R spatial object such as 'sf' and 'raster' or 'stars'.
Supports the FGD version 4.1, and accepts fundamental items and digital elevation models.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>)
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between fgdr versions 1.0.0 dated 2019-10-11 and 1.0.1 dated 2020-05-06
DESCRIPTION | 14 +++++------ MD5 | 26 +++++++++++----------- NAMESPACE | 2 - NEWS.md | 4 +++ R/read_fdg.R | 2 - R/read_fdg_dem.R | 18 +++++---------- R/util.R | 5 ++-- README.md | 18 +++++---------- inst/extdata/FG-GML-0000-00-00-DEM5A-dummy.xml | 14 +++++++++-- inst/extdata/FG-GML-0000-10-dem10b-dummy.xml | 10 ++++++-- man/figures/README-read_fgd_dem_raster_plot-1.png |binary man/read_fgd_dem.Rd | 7 ++++- tests/testthat/test-read_fgd_dem.R | 1 tests/testthat/test-util.R | 8 ++---- 14 files changed, 69 insertions(+), 60 deletions(-)
Title: Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Description: Constructs D-optimal or near D-optimal treatment and block designs for linear
treatment models with crossed or nested block factors. The treatment design can be any
arbitrary linear model defined by a treatment model formula and the block design can be
any feasible combination of crossed or nested block factors. The block design factors
are optimized sequentially and the levels of each successive block factor are optimized
within the levels of each preceding block factor. Crossed block designs with non-singular
interaction effects are optimized using a weighting scheme that allows for differential
weighting of first and second-order block effects. Outputs include a table showing the
allocation of treatments to blocks and tables showing the achieved D-efficiency factors
for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 3.9 dated 2020-02-29 and 4.0 dated 2020-05-06
DESCRIPTION | 41 - MD5 | 20 NAMESPACE | 2 R/blocks.r | 1010 ++++++++++++++++--------------- R/blocksdesign-package.r | 44 - R/design.r | 1395 +++++++++++++++++++++----------------------- build/vignette.rds |binary man/blocks.Rd | 26 man/blocksdesign-package.Rd | 44 - man/design.Rd | 109 +-- man/durban.Rd | 4 11 files changed, 1326 insertions(+), 1369 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. References: a) Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets. Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>. b) Tsagris, M., Lagani, V. and Tsamardinos, I. (2018). Feature selection for high-dimensional temporal data. BMC Bioinformatics, 19:17. <doi:10.1186/s12859-018-2023-7>. c) Tsagris, M., Borboudakis, G., Lagani, V. and Tsamardinos, I. (2018). Constraint-based causal discovery with mixed data. International Journal of Data Science and Analytics, 6(1): 19-30. <doi:10.1007/s41060-018-0097-y>. d) Tsagris, M., Papadovasilakis, Z., Lakiotaki, K. and Tsamardinos, I. (2018). Efficient feature selection on gene expression data: Which algorithm to use? BioRxiv. <doi:10.1101/431734>. e) Tsagris, M. (2019). Bayesian Network Learning with the PC Algorithm: An Improved and Correct Variation. Applied Artificial Intelligence, 33(2):101-123. <doi:10.1080/08839514.2018.1526760>. f) Tsagris, M. and Tsamardinos, I. (2019). Feature selection with the R package MXM. F1000Research 7: 1505. <doi:10.12688/f1000research.16216.2>. g) Borboudakis, G. and Tsamardinos, I. (2019). Forward-Backward Selection with Early Dropping. Journal of Machine Learning Research 20: 1-39.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MXM versions 1.4.6 dated 2020-04-05 and 1.4.7 dated 2020-05-06
DESCRIPTION | 10 +- MD5 | 158 +++++++++++++++++++------------------ NAMESPACE | 2 R/certificate.of.exclusion2.R | 5 - R/cond.regs.R | 9 +- R/cv.fbed.lmm.reg.R |only R/cv.mmpc.R | 13 +-- R/fbed.geeglm.reps.R | 2 R/fbed.glmm.reg.R | 4 R/fbed.lmm.R | 164 ++++++++++++++++++++++++--------------- R/fbed.reg.R | 4 R/generatefolds.R | 36 ++++---- R/glm.bsreg2.R | 7 - R/glmm.condregs.R | 2 R/kfbed.gee.reg.R | 2 R/kfbed.glmm.reg.R | 10 -- R/mmpc.gee2.R | 4 R/mmpc.glmm2.R | 4 R/mmpc2.R | 138 +++++++------------------------- R/modeler.R | 33 ++++--- R/partialcor.R | 2 R/pc.skel.R | 14 +-- build/vignette.rds |binary inst/doc/FBED_KVerrou_2_5.R | 56 ++++++------- inst/doc/FBED_KVerrou_2_5.html | 101 ++++++++++++------------ inst/doc/FS_guide.pdf |binary inst/doc/MMPC_tutorial.R | 44 +++++----- inst/doc/MMPC_tutorial.html | 87 ++++++++++---------- inst/doc/Networks_KVerrou.R | 52 ++++++------ inst/doc/Networks_KVerrou.html | 71 ++++++++-------- inst/doc/SES_KMVerrou_11_12.R | 68 ++++++++-------- inst/doc/SES_KMVerrou_11_12.html | 153 +++++++++++++++++------------------- inst/doc/article.pdf |binary inst/doc/guide.pdf |binary man/MXM-package.Rd | 45 ++++------ man/SES.Rd | 10 +- man/SES.glmm.Rd | 6 - man/SES.timeclass.Rd | 4 man/beta.mod.Rd | 2 man/beta.regs.Rd | 4 man/bic.fsreg.Rd | 1 man/bic.glm.fsreg.Rd | 2 man/big.fbed.reg.Rd | 2 man/bs.reg.Rd | 6 - man/censIndCR.Rd | 2 man/cond.regs.Rd | 4 man/cv.fbed.lmm.reg.Rd |only man/cv.gomp.Rd | 6 + man/ebic.bsreg.Rd | 1 man/ebic.glmm.bsreg.Rd | 2 man/ebic.regs.Rd | 2 man/fbed.gee.reg.Rd | 2 man/fbed.glmm.reg.Rd | 10 +- man/fbed.reg.Rd | 5 - man/fbedreg.bic.Rd | 4 man/fs.reg.Rd | 6 - man/glm.bsreg.Rd | 6 - man/glm.fsreg.Rd | 6 - man/glmm.bsreg.Rd | 4 man/gomp.Rd | 5 + man/iamb.Rd | 4 man/iamb.bs.Rd | 4 man/lm.fsreg.Rd | 6 - man/mmpc.glmm2.Rd | 4 man/mmpc.path.Rd | 4 man/mmpc2.Rd | 8 - man/mmpcbackphase.Rd | 2 man/reg.fit.Rd | 2 man/ses.model.Rd | 2 man/testIndBeta.Rd | 2 man/testIndGLMMReg.Rd | 2 man/testIndGamma.Rd | 2 man/testIndLogistic.Rd | 2 man/testIndPois.Rd | 2 man/testIndReg.Rd | 3 man/testIndTimeLogistic.Rd | 2 man/testIndTobit.Rd | 2 man/univregs.Rd | 4 man/wald.logisticregs.Rd | 4 man/zip.mod.Rd | 4 man/zip.regs.Rd | 4 81 files changed, 725 insertions(+), 746 deletions(-)
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2020), available at <https://bookdown.org/hneth/ds4psy/>. The book and course introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be instructive and entertaining, rather than elegant or efficient.
Author: Hansjoerg Neth [aut, cre]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 0.2.0 dated 2020-04-19 and 0.2.1 dated 2020-05-06
DESCRIPTION | 12 +- MD5 | 115 +++++++++++---------- NAMESPACE | 2 NEWS.md | 54 ++++++++-- R/color_fun.R | 2 R/data.R | 140 +++++++++++++++++++------ R/data_fun.R | 87 +++++++++++----- R/plot_fun.R | 112 +++++++++++--------- R/start.R | 2 R/text_fun.R | 32 +++-- R/theme_fun.R | 2 R/time_fun.R | 264 ++++++++++++++++++++++++++++++++++++------------- R/util_fun.R | 2 README.md | 18 +-- build/vignette.rds |binary data/t_1.rda |only data/t_2.rda |only data/t_3.rda |only data/t_4.rda |only inst/CITATION | 4 inst/WORDLIST |only inst/doc/ds4psy.R | 2 inst/doc/ds4psy.Rmd | 15 +- inst/doc/ds4psy.html | 13 +- man/coin.Rd | 2 man/data_1.Rd | 8 + man/data_2.Rd | 8 + man/data_t1.Rd | 8 + man/data_t1_de.Rd | 8 + man/data_t1_tab.Rd | 8 + man/data_t2.Rd | 8 + man/data_t3.Rd | 8 + man/data_t4.Rd | 8 + man/exp_wide.Rd | 8 + man/falsePosPsy_all.Rd | 8 + man/fame.Rd | 8 + man/l33t_rul35.Rd | 4 man/make_grid.Rd | 5 man/outliers.Rd | 8 + man/pal_ds4psy.Rd | 4 man/pi_100k.Rd | 8 + man/plot_n.Rd | 18 +-- man/plot_text.Rd | 4 man/plot_tiles.Rd | 26 ++-- man/posPsy_AHI_CESD.Rd | 8 + man/posPsy_long.Rd | 8 + man/posPsy_p_info.Rd | 8 + man/posPsy_wide.Rd | 8 + man/read_ascii.Rd | 11 +- man/t3.Rd | 8 + man/t4.Rd | 8 + man/t_1.Rd |only man/t_2.Rd |only man/t_3.Rd |only man/t_4.Rd |only man/table6.Rd | 8 + man/table7.Rd | 8 + man/table8.Rd | 8 + man/tb.Rd | 10 + man/what_date.Rd | 2 man/what_day.Rd | 23 +--- man/what_week.Rd | 2 vignettes/ds4psy.Rmd | 15 +- 63 files changed, 807 insertions(+), 373 deletions(-)
Title: Analyse Audio Recordings and Automatically Extract Animal
Vocalizations
Description: Contains all the necessary tools to process audio recordings of
various formats (e.g., WAV, WAC, MP3, ZC), filter noisy files,
display audio signals, detect and extract automatically acoustic
features for further analysis such as classification.
Author: Jean Marchal [aut, cre],
Francois Fabianek [aut],
Christopher Scott [aut],
Chris Corben [ctb, cph] (Read ZC files, original C code),
David Riggs [ctb, cph] (Read GUANO metadata, original R code),
Peter Wilson [ctb, cph] (Read ZC files, original R code),
Wildlife Acoustics, inc. [ctb, cph] (Read WAC files, original C code),
WavX, inc. [cph]
Maintainer: Jean Marchal <jean.marchal@wavx.ca>
Diff between bioacoustics versions 0.2.2 dated 2019-10-22 and 0.2.3 dated 2020-05-06
DESCRIPTION | 8 +++--- MD5 | 44 +++++++++++++++++------------------ NEWS.md | 7 +++++ R/plot_zc.R | 10 ++++---- build/vignette.rds |binary configure | 28 +++++++++++++--------- configure.ac | 9 ++++--- data/zc.rda |binary inst/doc/introduction.R | 10 ++++---- inst/doc/introduction.html | 2 - inst/doc/tutorial.R | 54 +++++++++++++++++++++---------------------- man/blob_detection.Rd | 30 +++++++++++++++++++----- man/fspec.Rd | 16 ++++++++++-- man/metadata.Rd | 3 -- man/myotis.Rd | 6 ++++ man/plot_zc.Rd | 16 ++++++++++-- man/spectro.Rd | 16 ++++++++++-- man/threshold_detection.Rd | 37 +++++++++++++++++++++++------ src/bat_bioacoustics.cpp | 2 - src/bb_analyse.cpp | 10 ++++---- src/bb_detect.cpp | 12 ++++----- src/fft.cpp | 56 +++++++++++++++++++++++---------------------- src/fft.h | 31 +++++++++++++----------- 23 files changed, 250 insertions(+), 157 deletions(-)
Title: Advanced Tools for Metrology
Description: A collection of functions for smart sampling and sensitivity analysis for metrology applications, including computationally expensive problems.
Author: Severine Demeyer and Alexandre Allard, with contributions from Bertrand Iooss
Maintainer: Alexandre Allard <alexandre.allard@lne.fr>
Diff between ATmet versions 1.2 dated 2014-04-17 and 1.2.1 dated 2020-05-06
DESCRIPTION | 12 +++++------- MD5 | 12 ++++++------ NAMESPACE | 1 + R/sensitivityMet.R | 2 +- man/ATmet-package.Rd | 36 ++++++++++++++++++++++-------------- man/LHSdesign.Rd | 8 +++----- man/MCdesign.Rd | 5 +---- 7 files changed, 39 insertions(+), 37 deletions(-)
Title: Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information
returned online by Google Trends is provided. Trends (number of
hits) over the time as well as geographic representation of the
results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.4.4 dated 2019-08-29 and 1.4.5 dated 2020-05-06
DESCRIPTION | 28 +-- MD5 | 29 ++- NAMESPACE | 1 NEWS.md | 10 + R/categories.R | 1 R/gtrends.R | 12 + R/related_queries.R | 35 ++-- R/related_topics.R | 31 ++- R/zzz.R | 365 +++++++++++++++++++++++++++------------------ inst/tinytest |only man/categories.Rd | 4 man/countries.Rd | 4 man/gtrends.Rd | 15 + man/setHandleParameters.Rd | 10 - tests |only 15 files changed, 342 insertions(+), 203 deletions(-)
Title: Visualise and Explore the Deep Dependencies of R Packages
Description: Provides tools for exploration of R package dependencies.
The main deepdep() function allows to acquire deep dependencies of any package and plot them in an elegant way.
It also adds some popularity measures for the packages e.g. in the form of download count through the 'cranlogs' package.
Uses the CRAN metadata database <http://crandb.r-pkg.org> and Bioconductor metadata <http://bioconductor.org>.
Other data acquire functions are: get_dependencies(), get_downloads() and get_description().
The deepdep_shiny() function runs shiny application that helps to produce a nice 'deepdep' plot.
Author: Dominik Rafacz [aut, cre],
Hubert Baniecki [aut],
Szymon Maksymiuk [aut],
Mateusz Bakala [aut]
Maintainer: Dominik Rafacz <dominikrafacz@gmail.com>
Diff between deepdep versions 0.2.0 dated 2020-03-06 and 0.2.1 dated 2020-05-06
DESCRIPTION | 17 + MD5 | 26 +- NEWS.md | 8 R/deepdep.R | 58 +++--- R/get_downloads.R | 6 R/plot_deepdep.R | 44 +++-- build/vignette.rds |binary inst/doc/deepdep-comparison.html | 25 ++ inst/doc/deepdep-package.R | 8 inst/doc/deepdep-package.Rmd | 8 inst/doc/deepdep-package.html | 339 +++++++++++++++------------------------ man/plot_deepdep.Rd | 6 tests/testthat/test_deepdep.R | 2 vignettes/deepdep-package.Rmd | 8 14 files changed, 258 insertions(+), 297 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories
(also known as a Sankey diagram), flow charts by extending the grid package,
a method for variable selection based on the SVD, Bézier lines with arrows complementing the
ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 1.9.2 dated 2020-03-06 and 1.10.0 dated 2020-05-06
DESCRIPTION | 16 - MD5 | 28 +-- NAMESPACE | 11 + NEWS | 5 R/pathJoin.R |only R/time2spanTxt.R |only R/yamlDump.R |only README.md | 1 build/vignette.rds |binary inst/doc/Descriptives.html | 280 +++++++++++++++--------------- inst/doc/Grid-based_flowcharts.html | 326 ++++++++++++++++++------------------ inst/doc/Transition-class.html | 160 ++++++++--------- inst/doc/transitionPlot.html | 190 ++++++++++---------- man/pathJoin.Rd |only man/time2spanTxt.Rd |only man/yamlDump.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-pathJoin.R |only tests/testthat/test-time2spanTxt.R |only 19 files changed, 521 insertions(+), 496 deletions(-)
Title: Estimate Entry Models
Description: Tools for measuring empirically the effects of entry in concentrated markets, based in Bresnahan and Reiss (1991) <https://www.jstor.org/stable/2937655>.
Author: Guilherme Jardim [aut, cre],
Arthur Bragança [ctb],
Pedro Fernandes [ctb]
Maintainer: Guilherme Jardim <gnjardim1@gmail.com>
Diff between entrymodels versions 0.2.0 dated 2020-02-03 and 0.2.1 dated 2020-05-06
DESCRIPTION | 19 +++++++++++++------ MD5 | 14 +++++++------- NEWS.md | 3 +++ R/em_2var.R | 19 ++++++++++++++++--- R/em_basic.R | 19 ++++++++++++++++--- README.md | 10 +++++----- man/em_2var.Rd | 5 +++-- man/em_basic.Rd | 5 +++-- 8 files changed, 66 insertions(+), 28 deletions(-)
Title: Tracer from R
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<http://tree.bio.ed.ac.uk/software/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.
Author: Richèl J.C. Bilderbeek [aut, cre]
(<https://orcid.org/0000-0003-1107-7049>),
Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/209),
David Winter [rev] (David reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/209)
Maintainer: Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>
Diff between tracerer versions 2.0.2 dated 2019-12-02 and 2.1 dated 2020-05-06
DESCRIPTION | 15 ++++++++------- MD5 | 18 +++++++++++------- R/calc_summary_stats.R | 10 +++++++--- R/is_trees_file.R | 4 ++-- R/parse_beast_trees.R | 7 ++++--- inst/WORDLIST | 3 +++ inst/doc/demo.html | 38 ++++++++++++++++++++++++-------------- man/figures |only man/tracerer.Rd | 1 - 9 files changed, 59 insertions(+), 37 deletions(-)
Title: Lightweight and Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and
manipulated. Test files are R scripts interspersed with test commands, that
can be programmed over. Fully automated build-install-test sequence for
packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
configurable output printing. Compare computed output with output stored
with the package. Run tests in parallel. Extensible by other packages.
Report side effects.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>)
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 1.1.0 dated 2019-09-26 and 1.2.0 dated 2020-05-06
DESCRIPTION | 8 - MD5 | 65 +++++----- NAMESPACE | 4 NEWS | 23 +++ R/expectations.R | 236 +++++++++++++++++++++++++++++-------- R/tinytest.R | 115 +++++++++++++----- README.md | 44 ++++-- build/vignette.rds |binary inst/CITATION |only inst/doc/tinytest_examples.R | 94 +++++++------- inst/doc/tinytest_examples.Rnw | 5 inst/doc/tinytest_examples.pdf |binary inst/doc/using_tinytest.R | 85 +++++++------ inst/doc/using_tinytest.Rnw | 66 +++++++++- inst/doc/using_tinytest.pdf |binary inst/tinytest/runs/test_set_env.R |only inst/tinytest/test_call_wd.R |only inst/tinytest/test_file.R | 8 + inst/tinytest/test_gh_issue_17.R | 4 inst/tinytest/test_tiny.R | 39 ++++++ man/build_install_test.Rd | 24 ++- man/exit_file.Rd | 10 - man/expect_equal.Rd | 50 ++++++- man/expect_equal_to_reference.Rd |only man/get_call_wd.Rd |only man/ignore.Rd | 4 man/register_tinytest_extension.Rd | 19 +- man/report_side_effects.Rd | 10 + man/run_test_dir.Rd | 29 ++-- man/run_test_file.Rd | 52 +++++--- man/test_package.Rd | 13 +- man/tinytest.Rd | 19 ++ man/tinytests.Rd | 19 ++ man/using.Rd | 5 vignettes/tinytest_examples.Rnw | 5 vignettes/using_tinytest.Rnw | 66 +++++++++- 36 files changed, 817 insertions(+), 304 deletions(-)
Title: Simulation of Pleiotropic, Linked and Epistatic Phenotypes
Description: The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1101/2020.01.11.902874>.
Author: Samuel Fernandes [aut, cre] (<https://orcid.org/0000-0001-8269-535X>),
Alexander Lipka [aut] (<https://orcid.org/0000-0003-1571-8528>)
Maintainer: Samuel Fernandes <samuelf@illinois.edu>
Diff between simplePHENOTYPES versions 1.0.5 dated 2019-12-04 and 1.2.4 dated 2020-05-06
simplePHENOTYPES-1.0.5/simplePHENOTYPES/R/GAPIT_numericalization.R |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/R/constrain.R |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/man/GAPIT_numericalization.Rd |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/man/QTN_linkage.Rd |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/man/QTN_partially_pleiotropic.Rd |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/man/QTN_pleiotropic.Rd |only simplePHENOTYPES-1.0.5/simplePHENOTYPES/man/constrain.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/DESCRIPTION | 14 simplePHENOTYPES-1.2.4/simplePHENOTYPES/MD5 | 71 simplePHENOTYPES-1.2.4/simplePHENOTYPES/NEWS.md |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/QTN_linkage.R | 1678 ++++++++-- simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/QTN_partially_pleiotropic.R | 723 ++-- simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/QTN_pleiotropic.R | 334 + simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/base_line_multi_traits.R | 106 simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/base_line_single_trait.R | 51 simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/constraint.R |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/create_phenotypes.R | 1463 +++++--- simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/data.R | 10 simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/file_loader.R | 596 +++ simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/genetic_effect.R | 61 simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/genotypes.R | 53 simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/numericalization.R |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/R/phenotypes.R | 1141 +++++- simplePHENOTYPES-1.2.4/simplePHENOTYPES/README.md | 266 - simplePHENOTYPES-1.2.4/simplePHENOTYPES/build/partial.rdb |binary simplePHENOTYPES-1.2.4/simplePHENOTYPES/build/vignette.rds |binary simplePHENOTYPES-1.2.4/simplePHENOTYPES/data/SNP55K_maize282_maf04.RData |binary simplePHENOTYPES-1.2.4/simplePHENOTYPES/inst/doc/simplePHENOTYPES.R | 54 simplePHENOTYPES-1.2.4/simplePHENOTYPES/inst/doc/simplePHENOTYPES.Rmd | 73 simplePHENOTYPES-1.2.4/simplePHENOTYPES/inst/doc/simplePHENOTYPES.html | 99 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/SNP55K_maize282_maf04.Rd | 20 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/base_line_multi_traits.Rd | 25 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/base_line_single_trait.Rd | 22 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/constraint.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/create_phenotypes.Rd | 454 +- simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/file_loader.Rd | 21 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/genetic_effect.Rd | 17 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/genotypes.Rd | 22 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/numericalization.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/phenotypes.Rd | 27 simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/qtn_linkage.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/qtn_partially_pleiotropic.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/man/qtn_pleiotropic.Rd |only simplePHENOTYPES-1.2.4/simplePHENOTYPES/vignettes/simplePHENOTYPES.Rmd | 73 44 files changed, 5434 insertions(+), 2040 deletions(-)
More information about simplePHENOTYPES at CRAN
Permanent link
Title: Nonparametric Survival Analysis
Description: Contains functions for non-parametric survival analysis of
exact and interval-censored observations.
Author: Yong Wang
Maintainer: ORPHANED
Diff between npsurv versions 0.4-0 dated 2017-10-14 and 0.4-0.1 dated 2020-05-06
DESCRIPTION | 12 ++++++++---- MD5 | 2 +- 2 files changed, 9 insertions(+), 5 deletions(-)
Title: Utilities for Japanese Mesh Code
Description: Helpful functions for using mesh code (80km to 125m) data in Japan. Visualize mesh code using 'ggplot2' and 'leaflet', etc.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>)
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between jpmesh versions 1.2.0 dated 2020-03-26 and 1.2.1 dated 2020-05-06
jpmesh-1.2.0/jpmesh/tests/testthat/test-lint.R |only jpmesh-1.2.1/jpmesh/DESCRIPTION | 8 jpmesh-1.2.1/jpmesh/MD5 | 33 +-- jpmesh-1.2.1/jpmesh/NEWS.md | 9 jpmesh-1.2.1/jpmesh/R/export_mesh.R | 19 + jpmesh-1.2.1/jpmesh/R/find_neighbor_mesh.R | 52 ++--- jpmesh-1.2.1/jpmesh/R/fine_separate.R | 2 jpmesh-1.2.1/jpmesh/R/is_mesh.R | 88 ++++++-- jpmesh-1.2.1/jpmesh/R/mesh_convert.R | 59 +++-- jpmesh-1.2.1/jpmesh/R/mesh_to_coords.R | 4 jpmesh-1.2.1/jpmesh/build/vignette.rds |binary jpmesh-1.2.1/jpmesh/inst/doc/usage.html | 154 +++++++++------ jpmesh-1.2.1/jpmesh/man/export_mesh.Rd | 2 jpmesh-1.2.1/jpmesh/man/export_meshes.Rd | 2 jpmesh-1.2.1/jpmesh/tests/testthat/test-converter.R | 20 + jpmesh-1.2.1/jpmesh/tests/testthat/test-mesh_to_coords.R | 1 jpmesh-1.2.1/jpmesh/tests/testthat/test-neighborhood.R | 7 jpmesh-1.2.1/jpmesh/tests/testthat/test-utities.R | 12 - 18 files changed, 306 insertions(+), 166 deletions(-)
Title: Extrapolate Gender, Age and Nationality of a Name
Description: Connects to the <https://genderize.io/>, <https://agify.io/> and <https://nationalize.io/> APIs to estimate gender, age and nationality of a first name.
Author: Matthias Brenninkmeijer [aut, cre]
Maintainer: Matthias Brenninkmeijer <matthias@brennotten.net>
Diff between DemografixeR versions 0.1.0 dated 2020-04-29 and 0.1.1 dated 2020-05-06
DESCRIPTION | 6 MD5 | 24 +-- NEWS.md | 5 R/api_structure.R | 6 README.md | 21 ++ inst/doc/Introduction_DemographixeR.R | 232 ++++++++++++++++++------------- inst/doc/Introduction_DemographixeR.Rmd | 161 ++++++++++++++------- inst/doc/Introduction_DemographixeR.html | 40 ++--- man/agify.Rd | 2 man/genderize.Rd | 2 man/nationalize.Rd | 2 tests/testthat/test-DemografixeR_test.R | 9 + vignettes/Introduction_DemographixeR.Rmd | 161 ++++++++++++++------- 13 files changed, 431 insertions(+), 240 deletions(-)
Title: Convolution-Type Smoothed Quantile Regression
Description: Fast and accurate convolution-type smoothed quantile regression. Implemented using Barzilai-Borwein gradient descent with a Huber regression warm start. Construct confidence intervals for regression coefficients using multiplier bootstrap.
Author: Xuming He [aut],
Xiaoou Pan [aut, cre],
Kean Ming Tan [aut],
Wen-Xin Zhou [aut]
Maintainer: Xiaoou Pan <xip024@ucsd.edu>
Diff between conquer versions 1.0.0 dated 2020-04-15 and 1.0.1 dated 2020-05-06
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + R/conquer-package.R | 2 +- R/generate_ns.R | 1 + R/smqr.R | 37 ++++++++++++------------------------- README.md | 24 +++--------------------- man/conquer-package.Rd | 2 +- man/conquer.Rd | 10 +++++----- src/RcppExports.cpp | 32 ++++++++++++++++---------------- src/smqr.cpp | 48 ++++++++++++++++++++++++++++++++---------------- 11 files changed, 87 insertions(+), 100 deletions(-)
Title: Binary and Categorical Image Similarity Index
Description: Computes a structural similarity metric (after the style of
MS-SSIM for images) for binary and categorical 2D and 3D images. Can be
based on accuracy (simple matching), Cohen's kappa, Rand index, adjusted
Rand index, Jaccard index, Dice index, normalized mutual information, or
adjusted mutual information. In addition, has fast computation
of Cohen's kappa, the Rand indices, and the two mutual informations.
Implements the methods of Thompson and Maitra (2020) <arXiv:2004.09073>.
Author: Geoffrey Thompson [aut, cre] (<https://orcid.org/0000-0003-2436-8822>)
Maintainer: Geoffrey Thompson <gzthompson@gmail.com>
Diff between catsim versions 0.2.0 dated 2020-04-28 and 0.2.1 dated 2020-05-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 43 ++++++++++++++++++++++--------------------- build/partial.rdb |binary src/internalfunction.cpp | 6 +++--- 6 files changed, 37 insertions(+), 32 deletions(-)
Title: 'BEAUti' from R
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.
Author: Richèl J.C. Bilderbeek [aut, cre]
(<https://orcid.org/0000-0003-1107-7049>),
Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/209),
David Winter [rev] (David reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/209),
Paul Van Els [ctb],
Raphael Scherrer [ctb],
Yacine B. Chehida [ctb],
Katharine S. Walter [ctb] (<https://orcid.org/0000-0003-0065-2204>),
Jana Riederer [ctb]
Maintainer: Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>
Diff between beautier versions 2.3.5 dated 2020-02-25 and 2.3.6 dated 2020-05-06
DESCRIPTION | 8 +++++--- MD5 | 10 +++++----- R/taxa_to_xml_tree.R | 2 +- inst/WORDLIST | 1 + inst/doc/demo.html | 6 +++--- inst/doc/examples.html | 4 ++-- 6 files changed, 17 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-24 1.4-0
2017-04-26 1.3-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-15 1.2-0
2015-10-16 1.0-0
Title: An R Interface to 'deck.gl'
Description: Makes 'deck.gl' <https://deck.gl/>, a WebGL-powered open-source JavaScript framework
for visual exploratory data analysis of large datasets, available within R via the 'htmlwidgets' package.
Furthermore, it supports basemaps from 'mapbox' <https://www.mapbox.com/> via
'mapbox-gl-js' <https://github.com/mapbox/mapbox-gl-js>.
Author: Stefan Kuethe [aut, cre]
Maintainer: Stefan Kuethe <crazycapivara@gmail.com>
Diff between deckgl versions 0.2.5 dated 2020-03-16 and 0.2.7 dated 2020-05-06
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deckgl-0.2.7/deckgl/man/add_source.Rd |only deckgl-0.2.7/deckgl/man/add_source_as_dep.Rd |only deckgl-0.2.7/deckgl/man/add_text_layer.Rd | 20 deckgl-0.2.7/deckgl/man/deckgl.Rd | 33 deckgl-0.2.7/deckgl/man/encode_icon_atlas.Rd | 2 deckgl-0.2.7/deckgl/man/figures |only deckgl-0.2.7/deckgl/man/reexports.Rd | 3 deckgl-0.2.7/deckgl/man/use_contour_definition.Rd | 12 deckgl-0.2.7/deckgl/man/use_icon_definition.Rd | 18 deckgl-0.2.7/deckgl/man/use_tooltip.Rd |only deckgl-0.2.7/deckgl/tests/testthat/helper_.R | 4 deckgl-0.2.7/deckgl/tests/testthat/test_icons.R | 10 deckgl-0.2.7/deckgl/tests/testthat/test_js.R | 2 deckgl-0.2.7/deckgl/tests/testthat/test_properties.R | 23 deckgl-0.2.7/deckgl/tests/testthat/test_tooltips.R | 8 deckgl-0.2.7/deckgl/vignettes/deckgl.Rmd |only deckgl-0.2.7/deckgl/vignettes/partials |only 178 files changed, 1043 insertions(+), 1025 deletions(-)
Title: Learning Causal Cyclic Graphs from Unknown Shift Interventions
Description: Code for 'backShift', an algorithm to estimate the connectivity
matrix of a directed (possibly cyclic) graph with hidden variables. The
underlying system is required to be linear and we assume that observations
under different shift interventions are available. For more details,
see <arXiv:1506.02494>.
Author: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>
Maintainer: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>
Diff between backShift versions 0.1.4.2 dated 2017-09-07 and 0.1.4.3 dated 2020-05-06
DESCRIPTION | 13 ++++----- MD5 | 22 ++++++++++------ NAMESPACE | 4 +-- R/getclf.R |only R/getstartvals.R |only R/make.del.R |only R/mlest.R |only R/mysort.R |only build/vignette.rds |binary inst/doc/exampleBackShift.R | 22 ++++++++-------- inst/doc/exampleBackShift.html | 54 +++++++++++++++++++++++++++++++---------- man/bootstrapBackShift.Rd | 13 ++++++++- man/plotGraphEdgeAttr.Rd | 14 ++++++++-- man/simulateInterventions.Rd | 16 ++++++++++-- src/evallf.c |only 15 files changed, 110 insertions(+), 48 deletions(-)
Title: Solving Least Squares or Quadratic Programming Problems under
Equality/Inequality Constraints
Description: It contains functions that solve least squares linear
regression problems under linear equality/inequality
constraints. Functions for solving quadratic programming
problems are also available, which transform such problems
into least squares ones first. It is developed based on the
'Fortran' program of Lawson and Hanson (1974, 1995), which is
public domain and available at
<http://www.netlib.org/lawson-hanson>.
Author: Yong Wang [aut, cre],
Charles L. Lawson [aut],
Richard J. Hanson [aut]
Maintainer: ORPHANED
Diff between lsei versions 1.2-0 dated 2017-10-23 and 1.2-0.1 dated 2020-05-06
DESCRIPTION | 11 +++++++---- MD5 | 4 ++-- src/pnnls.f | 2 +- 3 files changed, 10 insertions(+), 7 deletions(-)
Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Assessment. Items created with the 'IMak' package should not be used in applied settings as part of the working protocol without ensuring first that the items meet the required psychometric quality standards (see Blum & Holling, 2018) <DOI:10.3389/fpsyg.2018.01286>.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Diff between IMak versions 1.2.2 dated 2019-04-24 and 2.0.0 dated 2020-05-06
DESCRIPTION | 13 ++++---- MD5 | 14 +++++---- NAMESPACE | 5 +++ R/afs.R |only R/buildfa.R | 59 ++++++++------------------------------ R/plotfa.R | 28 +++++++----------- man/afs.Rd |only man/build_fa.Rd | 86 ++++++++++++++++++++++---------------------------------- man/plot_fa.Rd | 52 +++++++++++++++++++-------------- 9 files changed, 108 insertions(+), 149 deletions(-)
Title: Linear Discriminant Function and Canonical Correlation Analysis
Description: Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Manly & Alberto (2017, ISBN:9781498728966),
Tabachnik & Fidell (2013, ISBN-10:0-205-89081-4), and
Venables & Ripley (2002, ISBN:0-387-95457-0).
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between DFA.CANCOR versions 0.1.6 dated 2020-02-07 and 0.1.8 dated 2020-05-06
DESCRIPTION | 10 +- MD5 | 18 ++--- NAMESPACE | 5 - R/DFA.R | 180 ++++++++++++++++++++++++++++++----------------------- R/boc.R | 76 +++++++++++++++++++--- R/plot_linearity.R | 4 - man/CANCOR.Rd | 2 man/DFA.Rd | 36 +++++----- man/homogeneity.Rd | 2 man/normality.Rd | 2 10 files changed, 210 insertions(+), 125 deletions(-)
Title: Interface to 'Container Instances', 'Docker Registry' and
'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/overview/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'docker-compose', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes),
Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising
MMLS),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureContainers versions 1.2.1 dated 2020-03-11 and 1.3.0 dated 2020-05-06
AzureContainers-1.2.1/AzureContainers/inst/doc/vig02_mmls_deploy.Rmd |only AzureContainers-1.2.1/AzureContainers/inst/doc/vig02_mmls_deploy.html |only AzureContainers-1.2.1/AzureContainers/inst/doc/vig03_rbac.Rmd |only AzureContainers-1.2.1/AzureContainers/inst/doc/vig03_rbac.html |only AzureContainers-1.2.1/AzureContainers/tests/testthat/test00_rgcreate.R |only AzureContainers-1.2.1/AzureContainers/tests/testthat/test03_aks.R |only AzureContainers-1.2.1/AzureContainers/tests/testthat/test99_rgdelete.R |only AzureContainers-1.2.1/AzureContainers/vignettes/vig02_mmls_deploy.Rmd |only AzureContainers-1.2.1/AzureContainers/vignettes/vig03_rbac.Rmd |only AzureContainers-1.3.0/AzureContainers/DESCRIPTION | 11 AzureContainers-1.3.0/AzureContainers/MD5 | 88 ++-- AzureContainers-1.3.0/AzureContainers/NAMESPACE | 1 AzureContainers-1.3.0/AzureContainers/NEWS.md | 15 AzureContainers-1.3.0/AzureContainers/R/add_acr_methods.R | 2 AzureContainers-1.3.0/AzureContainers/R/add_aks_methods.R | 92 +++- AzureContainers-1.3.0/AzureContainers/R/az_agent_pool.R |only AzureContainers-1.3.0/AzureContainers/R/az_container_registry.R | 15 AzureContainers-1.3.0/AzureContainers/R/az_kubernetes_service.R | 131 +++++- AzureContainers-1.3.0/AzureContainers/R/docker_registry.R | 2 AzureContainers-1.3.0/AzureContainers/R/ext_tools.R | 93 ++-- AzureContainers-1.3.0/AzureContainers/README.md | 2 AzureContainers-1.3.0/AzureContainers/build/vignette.rds |binary AzureContainers-1.3.0/AzureContainers/inst/doc/vig01_plumber_deploy.Rmd | 46 +- AzureContainers-1.3.0/AzureContainers/inst/doc/vig01_plumber_deploy.html | 218 +++++----- AzureContainers-1.3.0/AzureContainers/inst/doc/vig02_restrserve_deploy_aci.Rmd |only AzureContainers-1.3.0/AzureContainers/inst/doc/vig02_restrserve_deploy_aci.html |only AzureContainers-1.3.0/AzureContainers/inst/doc/vig03_securing_aks_traefik.Rmd |only AzureContainers-1.3.0/AzureContainers/inst/doc/vig03_securing_aks_traefik.html |only AzureContainers-1.3.0/AzureContainers/inst/doc/vig04_rbac.Rmd |only AzureContainers-1.3.0/AzureContainers/inst/doc/vig04_rbac.html |only AzureContainers-1.3.0/AzureContainers/man/DockerRegistry.Rd | 13 AzureContainers-1.3.0/AzureContainers/man/KubernetesCluster.Rd | 19 AzureContainers-1.3.0/AzureContainers/man/aci.Rd | 5 AzureContainers-1.3.0/AzureContainers/man/acr.Rd | 5 AzureContainers-1.3.0/AzureContainers/man/agent_pool.Rd |only AzureContainers-1.3.0/AzureContainers/man/aks.Rd | 24 - AzureContainers-1.3.0/AzureContainers/man/aks_pools.Rd | 8 AzureContainers-1.3.0/AzureContainers/man/call_docker.Rd | 18 AzureContainers-1.3.0/AzureContainers/man/call_docker_compose.Rd | 7 AzureContainers-1.3.0/AzureContainers/man/call_helm.Rd | 7 AzureContainers-1.3.0/AzureContainers/man/call_kubectl.Rd | 15 AzureContainers-1.3.0/AzureContainers/man/create_acr.Rd | 2 AzureContainers-1.3.0/AzureContainers/man/create_aks.Rd | 40 + AzureContainers-1.3.0/AzureContainers/man/kubernetes_cluster.Rd | 2 AzureContainers-1.3.0/AzureContainers/tests/resources/hello.yaml | 13 AzureContainers-1.3.0/AzureContainers/tests/testthat/setup.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test00_tools.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test01_acr.R | 18 AzureContainers-1.3.0/AzureContainers/tests/testthat/test02_aci.R | 52 +- AzureContainers-1.3.0/AzureContainers/tests/testthat/test03a_aks_msi.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test03b_aks_acr_msi.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test03c_aks_sp.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test03d_aks_acr_sp.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test03e_aks_oldnodes.R |only AzureContainers-1.3.0/AzureContainers/tests/testthat/test03f_aks_private.R |only AzureContainers-1.3.0/AzureContainers/vignettes/vig01_plumber_deploy.Rmd | 46 +- AzureContainers-1.3.0/AzureContainers/vignettes/vig02_restrserve_deploy_aci.Rmd |only AzureContainers-1.3.0/AzureContainers/vignettes/vig03_securing_aks_traefik.Rmd |only AzureContainers-1.3.0/AzureContainers/vignettes/vig04_rbac.Rmd |only 59 files changed, 640 insertions(+), 370 deletions(-)
More information about AzureContainers at CRAN
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Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical measures,
which otherwise could only be calculated with additional effort
(like Cramer's V, Phi, or effect size statistics like Eta or Omega squared),
or for which currently no functions available. Second, another focus
lies on weighted variants of common statistical measures and tests
like weighted standard error, mean, t-test, correlation, and more.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.17.9 dated 2020-02-06 and 0.18.0 dated 2020-05-06
sjstats-0.17.9/sjstats/build/vignette.rds |only sjstats-0.17.9/sjstats/inst/doc |only sjstats-0.17.9/sjstats/vignettes |only sjstats-0.18.0/sjstats/DESCRIPTION | 14 sjstats-0.18.0/sjstats/MD5 | 55 -- sjstats-0.18.0/sjstats/NAMESPACE | 7 sjstats-0.18.0/sjstats/NEWS.md | 74 -- sjstats-0.18.0/sjstats/R/cv.R | 8 sjstats-0.18.0/sjstats/R/epsilon_sq.R | 35 - sjstats-0.18.0/sjstats/R/eta_sq.R | 197 ------- sjstats-0.18.0/sjstats/R/omega_sq.R | 87 --- sjstats-0.18.0/sjstats/build/partial.rdb |binary sjstats-0.18.0/sjstats/man/cv.Rd | 8 sjstats-0.18.0/sjstats/man/efc.Rd | 24 sjstats-0.18.0/sjstats/man/eta_sq.Rd | 44 - sjstats-0.18.0/sjstats/man/fish.Rd | 24 sjstats-0.18.0/sjstats/man/means_by_group.Rd | 188 +++---- sjstats-0.18.0/sjstats/man/r2.Rd | 74 +- sjstats-0.18.0/sjstats/man/samplesize_mixed.Rd | 168 +++--- sjstats-0.18.0/sjstats/man/scale_weights.Rd | 148 ++--- sjstats-0.18.0/sjstats/man/se_ybar.Rd | 58 +- sjstats-0.18.0/sjstats/man/svyglm.nb.Rd | 154 +++--- sjstats-0.18.0/sjstats/man/svyglm.zip.Rd | 114 ++-- sjstats-0.18.0/sjstats/man/weighted_sd.Rd | 378 +++++++-------- sjstats-0.18.0/sjstats/tests/testthat/test-anova_stats.R | 24 25 files changed, 761 insertions(+), 1122 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 2,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.41.1 dated 2020-03-07 and 1.42 dated 2020-05-06
DESCRIPTION | 10 +- MD5 | 22 ++--- NEWS | 6 + R/EZR.R | 123 ++++++++++++++++++++++++++-- inst/CHANGES | 6 + inst/doc/EZR.htm | 5 - inst/doc/EZR.pdf |binary inst/etc/menus.txt | 1 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 5 - man/EZR.dialogs.Rd | 1 po/R-RcmdrPlugin.EZR.po | 20 ++++ 12 files changed, 172 insertions(+), 27 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Hierarchical Model-Based Estimation Approach
Description: For estimation of a variable of interest using two sources of auxiliary information available in a nested structure. For reference see Saarela et al. (2016)<doi:10.1007/s13595-016-0590-1> and Saarela et al. (2018) <doi:10.3390/rs10111832>.
Author: Svetlana Saarela [cre, aut],
Sören Holm [aut],
Zhiqiang Yang [aut],
Wilmer Prentius [ctb]
Maintainer: Svetlana Saarela <admin@svetlanasaarela.com>
Diff between HMB versions 1.0 dated 2018-11-30 and 1.1 dated 2020-05-06
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- R/gtsmb.R | 8 ++-- R/tsmb.R | 3 + src/cpp_ghmb.cpp | 20 ++++++----- src/cpp_gtsmb_inner.cpp | 32 +++++++++--------- src/cpp_hmb.cpp | 20 ++++++----- src/cpp_tsmb.cpp | 84 +++++++++--------------------------------------- 8 files changed, 75 insertions(+), 114 deletions(-)
Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum
likelihood estimation for unidimensional and multidimensional
item response models. The package functionality covers the
Rasch model, 2PL model, 3PL model, generalized partial credit model,
multi-faceted Rasch model, nominal item response model,
structured latent class model, mixture distribution IRT models,
and located latent class models. Latent regression models and
plausible value imputation are also supported. For details see
Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>,
Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>,
Formann, 1982 <doi:10.1002/bimj.4710240209>,
Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 3.4-26 dated 2020-03-10 and 3.5-19 dated 2020-05-06
DESCRIPTION | 8 +-- MD5 | 79 +++++++++++++++---------------- R/RcppExports.R | 2 R/plot.tam.R | 4 - R/summary.tam.jml.R | 2 R/summary.tam.linking.R | 5 + R/tam.fa.R | 2 R/tam.jml.R | 2 R/tam.jml.fit.R | 17 ++---- R/tam.latreg.R | 4 - R/tam.linking.R | 13 +++-- R/tam.mml.2pl.R | 4 - R/tam.mml.3pl.R | 5 + R/tam.mml.R | 5 + R/tam.mml.mfr.R | 16 +++--- R/tam.modelfit.R | 4 - R/tam.np.R | 4 - R/tam.pv.mcmc.R | 4 - R/tam_find_root.R | 6 -- R/tam_fisherz.R |only R/tam_generate_xsi_fixed_estimated.R | 4 - R/tam_jml_version1.R | 4 - R/tam_jml_version2.R | 4 - R/tam_jml_wle.R | 2 R/tam_linking_irf_discrepancy.R | 7 +- R/tam_linking_joint.R | 25 +++++++-- R/tam_mml_3pl_ic.R | 2 R/tam_mml_calc_prob.R | 2 R/tam_mml_calc_prob_R.R | 5 - R/tam_mml_ic.R | 2 R/tam_mml_mfr_proc_multiple_person_ids.R | 16 ++++-- R/tam_summary_print_ic.R | 2 R/tamaan.R | 4 - build/partial.rdb |binary inst/NEWS | 28 +++++++++- man/tam.linking.Rd | 27 +++++++--- man/tam.mml.3pl.Rd | 2 man/tam.mml.Rd | 8 +-- man/tam.wle.Rd | 4 - src/RcppExports.cpp | 2 src/init.c | 2 41 files changed, 195 insertions(+), 143 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Provides 'ggplot2' and 'leaflet' wrapper functions designed to simplify the creation of high quality graph and map visualisations. These functions only require inputs of data, variables and titles to provide beautiful interactive or image visualisations. However they allow for more flexibility if required. The intent is that high quality well-designed graphs and maps can be made more consistently with less effort, code and expertise than would otherwise be required.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 1.1.1 dated 2020-04-28 and 1.1.2 dated 2020-05-06
simplevis-1.1.1/simplevis/inst/shiny/example1 |only simplevis-1.1.1/simplevis/inst/shiny/example2 |only simplevis-1.1.1/simplevis/inst/shiny/example3 |only simplevis-1.1.1/simplevis/inst/shiny/template3 |only simplevis-1.1.1/simplevis/man/run_example.Rd |only simplevis-1.1.2/simplevis/DESCRIPTION | 12 simplevis-1.1.2/simplevis/MD5 | 150 ++----- simplevis-1.1.2/simplevis/NAMESPACE | 1 simplevis-1.1.2/simplevis/NEWS.md | 9 simplevis-1.1.2/simplevis/R/ggplot_box_fun.R | 29 + simplevis-1.1.2/simplevis/R/ggplot_hbar_fun.R | 87 +++- simplevis-1.1.2/simplevis/R/ggplot_line_fun.R | 52 ++ simplevis-1.1.2/simplevis/R/ggplot_scatter_fun.R | 52 ++ simplevis-1.1.2/simplevis/R/ggplot_sf_fun.R | 52 ++ simplevis-1.1.2/simplevis/R/ggplot_stars_fun.R | 56 ++ simplevis-1.1.2/simplevis/R/ggplot_vbar_fun.R | 76 ++- simplevis-1.1.2/simplevis/R/run_app_fun.R | 23 - simplevis-1.1.2/simplevis/README.md | 2 simplevis-1.1.2/simplevis/inst/doc/simplevis.R | 35 + simplevis-1.1.2/simplevis/inst/doc/simplevis.Rmd | 57 +- simplevis-1.1.2/simplevis/inst/doc/simplevis.html | 114 ++--- simplevis-1.1.2/simplevis/inst/shiny/template1/global.R | 4 simplevis-1.1.2/simplevis/inst/shiny/template1/make_app_vis.R |only simplevis-1.1.2/simplevis/inst/shiny/template1/server.R | 105 +++-- simplevis-1.1.2/simplevis/inst/shiny/template1/ui.R | 20 simplevis-1.1.2/simplevis/inst/shiny/template1/www/about.Rmd | 2 simplevis-1.1.2/simplevis/inst/shiny/template1/www/style.css | 6 simplevis-1.1.2/simplevis/inst/shiny/template2/global.R | 11 simplevis-1.1.2/simplevis/inst/shiny/template2/make_app_vis.R |only simplevis-1.1.2/simplevis/inst/shiny/template2/server.R | 210 +++++----- simplevis-1.1.2/simplevis/inst/shiny/template2/ui.R | 58 +- simplevis-1.1.2/simplevis/inst/shiny/template2/www/about.Rmd | 2 simplevis-1.1.2/simplevis/inst/shiny/template2/www/style.css | 6 simplevis-1.1.2/simplevis/man/ggplot_box.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_box_facet.Rd | 5 simplevis-1.1.2/simplevis/man/ggplot_hbar.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_hbar_col.Rd | 15 simplevis-1.1.2/simplevis/man/ggplot_hbar_col_facet.Rd | 7 simplevis-1.1.2/simplevis/man/ggplot_hbar_facet.Rd | 9 simplevis-1.1.2/simplevis/man/ggplot_line.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_line_col.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_line_col_facet.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_line_facet.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_scatter.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_scatter_col.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_scatter_col_facet.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_scatter_facet.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_sf.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_sf_col.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_sf_col_facet.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_sf_facet.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_stars.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_stars_col.Rd | 3 simplevis-1.1.2/simplevis/man/ggplot_stars_col_facet.Rd | 5 simplevis-1.1.2/simplevis/man/ggplot_stars_facet.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_vbar.Rd | 4 simplevis-1.1.2/simplevis/man/ggplot_vbar_col.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_vbar_col_facet.Rd | 2 simplevis-1.1.2/simplevis/man/ggplot_vbar_facet.Rd | 4 simplevis-1.1.2/simplevis/vignettes/simplevis.Rmd | 57 +- 60 files changed, 851 insertions(+), 543 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.0.0 dated 2020-03-11 and 5.0.1 dated 2020-05-06
DESCRIPTION | 7 +++-- MD5 | 16 ++++++------ inst/NEWS | 6 ++++ inst/include/tbb/internal/_concurrent_queue_impl.h | 2 - inst/include/tbb/internal/_concurrent_unordered_impl.h | 2 - src/Makevars.in | 22 +++++++++-------- src/tbb/src/tbb/concurrent_queue.cpp | 2 - src/tbb/src/tbb/tbb_statistics.h | 2 - tools/config/configure.R | 12 ++++++--- 9 files changed, 43 insertions(+), 28 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a model without having to remember the different argument names across different functions or computational engines (e.g. 'R', 'Spark', 'Stan', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between parsnip versions 0.1.0 dated 2020-04-09 and 0.1.1 dated 2020-05-06
parsnip-0.1.0/parsnip/build/parsnip.pdf |only parsnip-0.1.1/parsnip/DESCRIPTION | 8 parsnip-0.1.1/parsnip/MD5 | 124 +- parsnip-0.1.1/parsnip/NAMESPACE | 6 parsnip-0.1.1/parsnip/NEWS.md | 20 parsnip-0.1.1/parsnip/R/boost_tree.R | 35 parsnip-0.1.1/parsnip/R/decision_tree.R | 35 parsnip-0.1.1/parsnip/R/engines.R | 4 parsnip-0.1.1/parsnip/R/fit_helpers.R | 4 parsnip-0.1.1/parsnip/R/linear_reg.R | 52 - parsnip-0.1.1/parsnip/R/logistic_reg.R | 53 - parsnip-0.1.1/parsnip/R/mars.R | 25 parsnip-0.1.1/parsnip/R/mlp.R | 32 parsnip-0.1.1/parsnip/R/multinom_reg.R | 39 parsnip-0.1.1/parsnip/R/nearest_neighbor.R | 24 parsnip-0.1.1/parsnip/R/nullmodel.R | 34 parsnip-0.1.1/parsnip/R/predict_raw.R | 6 parsnip-0.1.1/parsnip/R/rand_forest.R | 42 - parsnip-0.1.1/parsnip/R/reexports.R | 4 parsnip-0.1.1/parsnip/R/surv_reg.R | 25 parsnip-0.1.1/parsnip/R/svm_poly.R | 21 parsnip-0.1.1/parsnip/R/svm_rbf.R | 36 parsnip-0.1.1/parsnip/R/svm_rbf_data.R | 139 +++ parsnip-0.1.1/parsnip/R/zzz.R | 71 + parsnip-0.1.1/parsnip/man/boost_tree.Rd | 99 +- parsnip-0.1.1/parsnip/man/decision_tree.Rd | 101 +- parsnip-0.1.1/parsnip/man/linear_reg.Rd | 130 ++- parsnip-0.1.1/parsnip/man/logistic_reg.Rd | 132 ++- parsnip-0.1.1/parsnip/man/mars.Rd | 55 - parsnip-0.1.1/parsnip/man/mlp.Rd | 83 + parsnip-0.1.1/parsnip/man/multinom_reg.Rd | 101 +- parsnip-0.1.1/parsnip/man/nearest_neighbor.Rd | 51 - parsnip-0.1.1/parsnip/man/null_model.Rd | 37 parsnip-0.1.1/parsnip/man/predict.model_fit.Rd | 4 parsnip-0.1.1/parsnip/man/rand_forest.Rd | 125 ++ parsnip-0.1.1/parsnip/man/reexports.Rd | 3 parsnip-0.1.1/parsnip/man/rmd |only parsnip-0.1.1/parsnip/man/surv_reg.Rd | 54 - parsnip-0.1.1/parsnip/man/svm_poly.Rd | 43 - parsnip-0.1.1/parsnip/man/svm_rbf.Rd | 85 +- parsnip-0.1.1/parsnip/man/tidy.model_fit.Rd | 2 parsnip-0.1.1/parsnip/man/tidy.nullmodel.Rd |only parsnip-0.1.1/parsnip/tests/testthat/test_boost_tree_C50.R | 2 parsnip-0.1.1/parsnip/tests/testthat/test_linear_reg.R | 2 parsnip-0.1.1/parsnip/tests/testthat/test_logistic_reg.R | 2 parsnip-0.1.1/parsnip/tests/testthat/test_mars.R | 2 parsnip-0.1.1/parsnip/tests/testthat/test_misc.R | 31 parsnip-0.1.1/parsnip/tests/testthat/test_mlp_nnet.R | 2 parsnip-0.1.1/parsnip/tests/testthat/test_multinom_reg_nnet.R | 1 parsnip-0.1.1/parsnip/tests/testthat/test_rand_forest_ranger.R | 1 parsnip-0.1.1/parsnip/tests/testthat/test_surv_reg_survreg.R | 1 parsnip-0.1.1/parsnip/tests/testthat/test_svm_liquidsvm.R |only parsnip-0.1.1/parsnip/tests/testthat/test_svm_poly.R | 1 parsnip-0.1.1/parsnip/tests/testthat/test_svm_rbf.R | 3 parsnip-0.1.1/parsnip/vignettes/articles/Classification.Rmd | 79 - parsnip-0.1.1/parsnip/vignettes/articles/Models.Rmd | 98 -- parsnip-0.1.1/parsnip/vignettes/articles/Regression.Rmd | 188 ---- parsnip-0.1.1/parsnip/vignettes/articles/Scratch.Rmd | 419 ---------- parsnip-0.1.1/parsnip/vignettes/articles/Submodels.Rmd | 5 59 files changed, 1204 insertions(+), 1577 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.1.6 dated 2020-02-21 and 2.1.7 dated 2020-05-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 3 +++ R/start.R | 11 +++++++++++ build/vignette.rds |binary inst/doc/opencpu-paper.pdf |binary 6 files changed, 22 insertions(+), 8 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Craig Citro [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Google Inc [cph],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gargle versions 0.4.0 dated 2019-10-04 and 0.5.0 dated 2020-05-06
gargle-0.4.0/gargle/tests/testthat/test-credentials-byo-auth2.R |only gargle-0.5.0/gargle/DESCRIPTION | 13 gargle-0.5.0/gargle/LICENSE | 2 gargle-0.5.0/gargle/MD5 | 167 +++-- gargle-0.5.0/gargle/NAMESPACE | 4 gargle-0.5.0/gargle/NEWS.md | 41 + gargle-0.5.0/gargle/R/AuthState-class.R | 46 + gargle-0.5.0/gargle/R/Gargle-class.R | 85 ++- gargle-0.5.0/gargle/R/compat-purrr.R | 15 gargle-0.5.0/gargle/R/conditions.R | 2 gargle-0.5.0/gargle/R/credential-function-registry.R | 2 gargle-0.5.0/gargle/R/credentials_app_default.R | 16 gargle-0.5.0/gargle/R/credentials_byo_oauth2.R | 6 gargle-0.5.0/gargle/R/credentials_gce.R | 16 gargle-0.5.0/gargle/R/credentials_service_account.R | 22 gargle-0.5.0/gargle/R/credentials_user_oauth2.R | 2 gargle-0.5.0/gargle/R/field-mask.R |only gargle-0.5.0/gargle/R/gargle-package.R | 2 gargle-0.5.0/gargle/R/inside-the-house.R | 2 gargle-0.5.0/gargle/R/oauth-cache.R | 42 - gargle-0.5.0/gargle/R/request-develop.R | 53 - gargle-0.5.0/gargle/R/request-make.R | 23 gargle-0.5.0/gargle/R/response_process.R | 36 + gargle-0.5.0/gargle/R/token-fetch.R | 6 gargle-0.5.0/gargle/R/ui.R | 11 gargle-0.5.0/gargle/R/utils.R | 4 gargle-0.5.0/gargle/README.md | 16 gargle-0.5.0/gargle/build/vignette.rds |binary gargle-0.5.0/gargle/inst/WORDLIST |only gargle-0.5.0/gargle/inst/discovery-doc-ingest/discover-discovery.R | 9 gargle-0.5.0/gargle/inst/discovery-doc-ingest/ingest-functions.R | 50 + gargle-0.5.0/gargle/inst/doc/auth-from-web.R | 8 gargle-0.5.0/gargle/inst/doc/auth-from-web.Rmd | 2 gargle-0.5.0/gargle/inst/doc/auth-from-web.html | 67 +- gargle-0.5.0/gargle/inst/doc/gargle-auth-in-client-package.R | 26 gargle-0.5.0/gargle/inst/doc/gargle-auth-in-client-package.Rmd | 4 gargle-0.5.0/gargle/inst/doc/gargle-auth-in-client-package.html | 281 ++++------ gargle-0.5.0/gargle/inst/doc/get-api-credentials.R | 8 gargle-0.5.0/gargle/inst/doc/get-api-credentials.Rmd | 2 gargle-0.5.0/gargle/inst/doc/get-api-credentials.html | 85 +-- gargle-0.5.0/gargle/inst/doc/how-gargle-gets-tokens.R | 30 - gargle-0.5.0/gargle/inst/doc/how-gargle-gets-tokens.html | 279 ++++----- gargle-0.5.0/gargle/inst/doc/non-interactive-auth.R | 44 - gargle-0.5.0/gargle/inst/doc/non-interactive-auth.Rmd | 39 - gargle-0.5.0/gargle/inst/doc/non-interactive-auth.html | 217 ++++--- gargle-0.5.0/gargle/inst/doc/request-helper-functions.R | 20 gargle-0.5.0/gargle/inst/doc/request-helper-functions.html | 153 ++--- gargle-0.5.0/gargle/inst/doc/troubleshooting.R |only gargle-0.5.0/gargle/inst/doc/troubleshooting.Rmd |only gargle-0.5.0/gargle/inst/doc/troubleshooting.html |only gargle-0.5.0/gargle/man/AuthState-class.Rd | 207 +++++++ gargle-0.5.0/gargle/man/Gargle-class.Rd | 174 +++++- gargle-0.5.0/gargle/man/GceToken.Rd | 146 ++++- gargle-0.5.0/gargle/man/credentials_app_default.Rd | 23 gargle-0.5.0/gargle/man/credentials_byo_oauth2.Rd | 13 gargle-0.5.0/gargle/man/credentials_gce.Rd | 19 gargle-0.5.0/gargle/man/credentials_service_account.Rd | 24 gargle-0.5.0/gargle/man/credentials_user_oauth2.Rd | 38 - gargle-0.5.0/gargle/man/field_mask.Rd |only gargle-0.5.0/gargle/man/gargle-package.Rd | 4 gargle-0.5.0/gargle/man/gargle2.0_token.Rd | 16 gargle-0.5.0/gargle/man/gargle_options.Rd | 2 gargle-0.5.0/gargle/man/init_AuthState.Rd | 9 gargle-0.5.0/gargle/man/request_develop.Rd | 24 gargle-0.5.0/gargle/man/request_make.Rd | 36 + gargle-0.5.0/gargle/man/response_process.Rd | 7 gargle-0.5.0/gargle/man/token-info.Rd | 4 gargle-0.5.0/gargle/man/token_fetch.Rd | 11 gargle-0.5.0/gargle/tests/spelling.R |only gargle-0.5.0/gargle/tests/testthat/fixtures/README.Rmd | 9 gargle-0.5.0/gargle/tests/testthat/fixtures/README.md | 30 - gargle-0.5.0/gargle/tests/testthat/fixtures/drive-files-get_GET_40X.R | 3 gargle-0.5.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-bad-field-mask_400.rds |only gargle-0.5.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get_40X.R | 38 + gargle-0.5.0/gargle/tests/testthat/fixtures/tokeninfo_40X.R | 6 gargle-0.5.0/gargle/tests/testthat/helper.R | 8 gargle-0.5.0/gargle/tests/testthat/test-credentials-byo-oauth2.R |only gargle-0.5.0/gargle/tests/testthat/test-credentials_app_default.R |only gargle-0.5.0/gargle/tests/testthat/test-fetch.R | 8 gargle-0.5.0/gargle/tests/testthat/test-field-mask.R |only gargle-0.5.0/gargle/tests/testthat/test-gce-token.R | 1 gargle-0.5.0/gargle/tests/testthat/test-oauth-cache.R | 28 gargle-0.5.0/gargle/tests/testthat/test-oauth-token.R | 6 gargle-0.5.0/gargle/tests/testthat/test-registry.R | 4 gargle-0.5.0/gargle/tests/testthat/test-request-develop.R | 18 gargle-0.5.0/gargle/vignettes/articles/managing-tokens-securely.Rmd | 118 ++-- gargle-0.5.0/gargle/vignettes/auth-from-web.Rmd | 2 gargle-0.5.0/gargle/vignettes/gargle-auth-in-client-package.Rmd | 4 gargle-0.5.0/gargle/vignettes/get-api-credentials.Rmd | 2 gargle-0.5.0/gargle/vignettes/non-interactive-auth.Rmd | 39 - gargle-0.5.0/gargle/vignettes/troubleshooting.Rmd |only 91 files changed, 2002 insertions(+), 1037 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-23 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 0.1.6
2020-04-02 0.1.2
2020-04-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-03 2.0-0
2018-05-18 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-23 10.2-2
2020-03-18 10.0-0
2019-08-27 9.0-0
2019-03-29 8.0-0
2018-11-20 7.0-0
2018-03-08 6.1-0
2018-01-16 6.0-0
2017-09-22 5.0-1
2017-03-29 5.0-0
2016-12-14 4.0-0
2016-08-08 3.1-0
2016-07-13 3.0-0
2016-03-17 2.0-4
2016-02-24 2.0-3
2016-01-20 2.0-2
2015-12-02 2.0-1
2015-04-24 2.0-0
2015-04-10 1.0-1
2015-02-26 1.0-0
Title: Tools and Palettes for Bivariate Thematic Mapping
Description: Provides a 'ggplot2' centric approach to bivariate mapping. This is a
technique that maps two quantities simultaneously rather than the single value
that most thematic maps display. The package provides a suite of tools
for calculating breaks using multiple different approaches, a selection of
palettes appropriate for bivariate mapping and a scale function for 'ggplot2'
calls that adds those palettes to maps. A tool for creating bivariate legends
is also included.
Author: Christopher Prener [aut, cre] (<https://orcid.org/0000-0002-4310-9888>),
Timo Grossenbacher [aut],
Angelo Zehr [aut],
Joshua Stevens [ctb]
Maintainer: Christopher Prener <chris.prener@slu.edu>
Diff between biscale versions 0.1.2 dated 2019-06-22 and 0.2.0 dated 2020-05-06
DESCRIPTION | 14 +- MD5 | 49 +++++---- NAMESPACE | 4 NEWS.md | 8 + R/bi_class.R | 13 +- R/bi_legend.R | 48 ++++++--- R/bi_pal.R | 181 +++++++++++++++++++++++++++++++++++ R/bi_scale_color.R |only R/bi_scale_fill.R | 54 +++++++--- README.md | 83 +++++++++++----- build/vignette.rds |binary inst/doc/biscale.R | 12 +- inst/doc/biscale.Rmd | 24 +--- inst/doc/biscale.html | 116 ++++++++++------------ man/bi_pal.Rd | 30 +++++ man/bi_pal_manual.Rd |only man/bi_scale_color.Rd |only man/bi_scale_fill.Rd | 7 - man/bi_theme.Rd | 9 + man/stl_race_income.Rd | 6 - tests/testthat/data_central.dbf |only tests/testthat/data_central.prj |only tests/testthat/data_central.rda |only tests/testthat/data_central.shp |only tests/testthat/data_central.shx |only tests/testthat/test_bi_class.R | 15 -- tests/testthat/test_bi_legend.R | 12 +- tests/testthat/test_bi_scale_color.R |only tests/testthat/test_bi_scale_fill.R | 27 ++--- vignettes/biscale.Rmd | 24 +--- 30 files changed, 506 insertions(+), 230 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 0.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-04 0.2.7
2018-07-28 0.2.5
2018-07-27 0.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-09 0.1.3
2018-11-18 0.1.2
2018-08-31 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 0.2.2
2019-08-27 0.2.1
2019-08-20 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-08 1.1.1
2018-07-11 1.1.0
2018-02-28 1.0.3
2017-07-21 1.0.2
2017-06-19 1.0.1
2017-04-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-12 2.2
2013-06-07 2.1
2012-04-17 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-20 1.0.3
2017-06-15 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-21 0.1.0