Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-19 3.0
2017-05-05 2.1-4
2014-08-08 2.1-3
2013-10-17 2.1-1
2013-04-17 2-1
2013-04-11 1.08
Title: A Simple and Flexible Switch-Case Construct for the 'R' Language
Description: Provides a switch-case construct for 'R', as it is known from other programming languages. It allows to test multiple, similar conditions in an efficient, easy-to-read manner, so nested if-else constructs can be avoided. The switch-case construct is designed as an 'R' function that allows to return values depending on which condition is met and lets the programmer flexibly decide whether or not to leave the switch-case construct after a case block has been executed.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between switchcase versions 0.1.0 dated 2020-05-08 and 0.1.1 dated 2020-05-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/switchcase.r | 2 ++ 4 files changed, 16 insertions(+), 6 deletions(-)
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2018) <arXiv:1810.03136> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] (<https://orcid.org/0000-0002-5516-5107>),
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between smurf versions 1.0.5 dated 2020-03-19 and 1.0.6 dated 2020-05-16
DESCRIPTION | 13 +- MD5 | 20 ++-- R/Penalty_weights.R | 15 --- R/plot.R | 2 R/plot_lambda.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 23 ++++ inst/doc/smurf.html | 4 man/plot.glmsmurf.Rd | 64 ++++++------- man/plot_lambda.Rd | 242 +++++++++++++++++++++++++-------------------------- man/plot_reest.Rd | 88 +++++++++--------- 11 files changed, 238 insertions(+), 235 deletions(-)
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 1.0.1 dated 2020-02-01 and 1.1.0 dated 2020-05-16
shinymaterial-1.0.1/shinymaterial/inst/doc |only shinymaterial-1.1.0/shinymaterial/DESCRIPTION | 10 - shinymaterial-1.1.0/shinymaterial/MD5 | 93 +++++++--- shinymaterial-1.1.0/shinymaterial/R/dir-recursion.R |only shinymaterial-1.1.0/shinymaterial/R/shiny-material-dropdown.R | 5 shinymaterial-1.1.0/shinymaterial/R/shiny-material-floating-button.R | 12 - shinymaterial-1.1.0/shinymaterial/R/shiny-material-input.R | 1 shinymaterial-1.1.0/shinymaterial/R/shiny-material-page.R | 90 ++++++--- shinymaterial-1.1.0/shinymaterial/R/shiny-material-switch.R | 12 - shinymaterial-1.1.0/shinymaterial/R/update-shiny-material-button.R | 12 - shinymaterial-1.1.0/shinymaterial/inst/materialize/1.0.0/src |only shinymaterial-1.1.0/shinymaterial/man/material_button.Rd | 3 shinymaterial-1.1.0/shinymaterial/man/material_card.Rd | 3 shinymaterial-1.1.0/shinymaterial/man/material_dropdown.Rd | 10 - shinymaterial-1.1.0/shinymaterial/man/material_floating_button.Rd | 11 - shinymaterial-1.1.0/shinymaterial/man/material_input.Rd | 1 shinymaterial-1.1.0/shinymaterial/man/material_modal.Rd | 15 + shinymaterial-1.1.0/shinymaterial/man/material_number_box.Rd | 11 - shinymaterial-1.1.0/shinymaterial/man/material_page.Rd | 22 +- shinymaterial-1.1.0/shinymaterial/man/material_radio_button.Rd | 10 - shinymaterial-1.1.0/shinymaterial/man/material_side_nav.Rd | 8 shinymaterial-1.1.0/shinymaterial/man/material_side_nav_tabs.Rd | 8 shinymaterial-1.1.0/shinymaterial/man/material_slider.Rd | 11 - shinymaterial-1.1.0/shinymaterial/man/material_switch.Rd | 12 - shinymaterial-1.1.0/shinymaterial/man/update_material_button.Rd | 13 - shinymaterial-1.1.0/shinymaterial/man/update_material_dropdown.Rd | 3 shinymaterial-1.1.0/shinymaterial/tests/app.R | 13 - shinymaterial-1.1.0/shinymaterial/tests/collapsible |only shinymaterial-1.1.0/shinymaterial/tests/color-test |only shinymaterial-1.1.0/shinymaterial/tests/fileInputTest/app.R | 5 30 files changed, 275 insertions(+), 119 deletions(-)
Title: Running Operations for Vectors
Description: Fully supports rolling windows operations by controlling window length,
window lag, time indexing. With runner one can apply any R function on rolling
windows. Package eases work with equally and unequally spaced time series.
Author: Dawid Kałędkowski [aut, cre] (<https://orcid.org/0000-0001-9533-457X>)
Maintainer: Dawid Kałędkowski <dawid.kaledkowski@gmail.com>
Diff between runner versions 0.3.5 dated 2020-04-11 and 0.3.7 dated 2020-05-16
runner-0.3.5/runner/man/seq_by.Rd |only runner-0.3.7/runner/DESCRIPTION | 6 runner-0.3.7/runner/MD5 | 44 runner-0.3.7/runner/NAMESPACE | 3 runner-0.3.7/runner/NEWS.md | 4 runner-0.3.7/runner/R/run.R | 549 +++++++++- runner-0.3.7/runner/README.md | 28 runner-0.3.7/runner/inst/WORDLIST | 2 runner-0.3.7/runner/inst/doc/apply_any_r_function.R | 126 +- runner-0.3.7/runner/inst/doc/apply_any_r_function.Rmd | 155 ++ runner-0.3.7/runner/inst/doc/apply_any_r_function.html | 162 ++ runner-0.3.7/runner/inst/doc/runner_examples.R | 48 runner-0.3.7/runner/inst/doc/runner_examples.Rmd | 52 runner-0.3.7/runner/inst/doc/runner_examples.html | 260 ++-- runner-0.3.7/runner/man/k_by.Rd | 12 runner-0.3.7/runner/man/reformat_k.Rd | 2 runner-0.3.7/runner/man/run_by.Rd |only runner-0.3.7/runner/man/runner.Rd | 26 runner-0.3.7/runner/man/seq_at.Rd |only runner-0.3.7/runner/man/this_group.Rd |only runner-0.3.7/runner/tests/testthat/test_external_compatibility.R |only runner-0.3.7/runner/tests/testthat/test_run_by.R |only runner-0.3.7/runner/tests/testthat/test_runner.R | 150 ++ runner-0.3.7/runner/tests/testthat/test_timeops.R | 59 - runner-0.3.7/runner/vignettes/apply_any_r_function.Rmd | 155 ++ runner-0.3.7/runner/vignettes/runner_examples.Rmd | 52 26 files changed, 1543 insertions(+), 352 deletions(-)
Title: 'GeoJSON' Topology Calculations and Operations
Description: Tools for doing calculations and manipulations on 'GeoJSON',
a 'geospatial' data interchange format (<https://tools.ietf.org/html/rfc7946>).
'GeoJSON' is also valid 'JSON'.
Author: Scott Chamberlain [aut, cre],
Niels Lohmann [cph]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between geoops versions 0.2.0 dated 2018-06-18 and 0.3.0 dated 2020-05-16
geoops-0.2.0/geoops/inst/doc/geoops_vignette.R |only geoops-0.2.0/geoops/inst/doc/geoops_vignette.Rmd |only geoops-0.2.0/geoops/inst/doc/geoops_vignette.html |only geoops-0.2.0/geoops/tools |only geoops-0.2.0/geoops/vignettes/geoops_vignette.Rmd |only geoops-0.3.0/geoops/DESCRIPTION | 14 geoops-0.3.0/geoops/LICENSE | 2 geoops-0.3.0/geoops/MD5 | 66 geoops-0.3.0/geoops/NEWS.md | 9 geoops-0.3.0/geoops/R/geoops-package.R | 6 geoops-0.3.0/geoops/README.md | 174 geoops-0.3.0/geoops/build/vignette.rds |binary geoops-0.3.0/geoops/inst/doc/geoops.R |only geoops-0.3.0/geoops/inst/doc/geoops.Rmd |only geoops-0.3.0/geoops/inst/doc/geoops.html |only geoops-0.3.0/geoops/man/Feature.Rd | 17 geoops-0.3.0/geoops/man/FeatureCollection.Rd | 17 geoops-0.3.0/geoops/man/GeometryCollection.Rd | 16 geoops-0.3.0/geoops/man/LineString.Rd | 16 geoops-0.3.0/geoops/man/MultiLineString.Rd | 16 geoops-0.3.0/geoops/man/MultiPoint.Rd | 16 geoops-0.3.0/geoops/man/MultiPolygon.Rd | 16 geoops-0.3.0/geoops/man/Point.Rd | 16 geoops-0.3.0/geoops/man/Polygon.Rd | 16 geoops-0.3.0/geoops/man/figures |only geoops-0.3.0/geoops/man/geo_bbox_polygon.Rd | 2 geoops-0.3.0/geoops/man/geo_pointgrid.Rd | 2 geoops-0.3.0/geoops/man/geo_trianglegrid.Rd | 2 geoops-0.3.0/geoops/man/geojson-types.Rd | 16 geoops-0.3.0/geoops/man/geoops-package.Rd | 2 geoops-0.3.0/geoops/src/json.h |15764 ++++++++++------ geoops-0.3.0/geoops/tests/testthat/test-destination.R | 7 geoops-0.3.0/geoops/tests/testthat/test-get_coords.R | 3 geoops-0.3.0/geoops/tests/testthat/test-line_distance.R | 3 geoops-0.3.0/geoops/tests/testthat/test-trianglegrid.R | 6 geoops-0.3.0/geoops/vignettes/geoops.Rmd |only 36 files changed, 10986 insertions(+), 5238 deletions(-)
Title: Check-Fields and Check-Boxes for 'rmarkdown'
Description: Creates auto checking check-fields and check-boxes for 'rmarkdown' html. It could be used in class, when teacher share materials and tasks, so student can solve some problems and check themselves. In contrast with the 'learnr' package the 'checkdown' package works without 'shiny'.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between checkdown versions 0.0.4 dated 2020-04-25 and 0.0.5 dated 2020-05-16
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS | 4 R/check_question.R | 14 +-- R/insert_images.R | 10 +- build/vignette.rds |binary inst/doc/start_checkdown.R | 5 - inst/doc/start_checkdown.Rmd | 15 ++- inst/doc/start_checkdown.html | 176 +++++++++++++++++++++--------------------- vignettes/start_checkdown.Rmd | 15 ++- 10 files changed, 148 insertions(+), 115 deletions(-)
Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 1.0 dated 2020-05-07 and 1.1 dated 2020-05-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/NEWS.Rd | 29 +++++++++++++++++------------ src/All.cpp | 12 ++++++------ 4 files changed, 30 insertions(+), 25 deletions(-)
Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels <http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470772689.html>.
Author: Tom Reynkens [aut, cre] (<https://orcid.org/0000-0002-5516-5107>),
Roel Verbelen [aut] (R code for Mixed Erlang distribution,
<https://orcid.org/0000-0002-2347-9240>),
Anastasios Bardoutsos [ctb] (Original R code for cEPD estimator),
Dries Cornilly [ctb] (Original R code for EVT estimators for truncated
data),
Yuri Goegebeur [ctb] (Original S-Plus code for basic EVT estimators),
Klaus Herrmann [ctb] (Original R code for GPD estimator)
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between ReIns versions 1.0.9 dated 2020-02-10 and 1.0.10 dated 2020-05-16
DESCRIPTION | 8 +- MD5 | 170 ++++++++++++++++++++++++------------------------- build/vignette.rds |binary inst/NEWS.Rd | 9 ++ inst/doc/ReIns.html | 4 - man/EPD.Rd | 2 man/ExcessEPD.Rd | 2 man/ExcessGPD.Rd | 2 man/ExcessPareto.Rd | 2 man/ExpQQ.Rd | 2 man/GPDmle.Rd | 2 man/GPDresiduals.Rd | 2 man/Hill.Rd | 2 man/Hill.kopt.Rd | 2 man/Hill2oQV.Rd | 2 man/LStail.Rd | 2 man/LognormalQQ.Rd | 2 man/LognormalQQ_der.Rd | 2 man/MeanExcess.Rd | 2 man/MeanExcess_TB.Rd | 2 man/Moment.Rd | 2 man/ParetoQQ.Rd | 2 man/ParetoQQ_der.Rd | 2 man/Prob.Rd | 2 man/ProbEPD.Rd | 2 man/ProbGH.Rd | 2 man/ProbGPD.Rd | 2 man/ProbMOM.Rd | 2 man/ProbReg.Rd | 2 man/Quant.Rd | 2 man/Quant2o.Rd | 2 man/QuantGH.Rd | 2 man/QuantGPD.Rd | 2 man/QuantMOM.Rd | 2 man/QuantReg.Rd | 2 man/Scale.2o.Rd | 2 man/Scale.Rd | 2 man/ScaleEPD.Rd | 2 man/ScaleReg.Rd | 2 man/SpliceECDF.Rd | 2 man/SpliceLL.Rd | 2 man/SpliceLL_TB.Rd | 2 man/SplicePP.Rd | 2 man/SplicePP_TB.Rd | 2 man/SpliceQQ.Rd | 2 man/SpliceQQ_TB.Rd | 2 man/SpliceTB.Rd | 2 man/WeibullQQ.Rd | 2 man/WeibullQQ_der.Rd | 2 man/cEPD.Rd | 2 man/cExpQQ.Rd | 2 man/cGPD.Rd | 2 man/cHill.Rd | 2 man/cLognormalQQ.Rd | 2 man/cMoment.Rd | 2 man/cParetoQQ.Rd | 2 man/cProb.Rd | 2 man/cProbEPD.Rd | 2 man/cProbGH.Rd | 2 man/cProbGPD.Rd | 2 man/cProbMOM.Rd | 2 man/cQuant.Rd | 2 man/cQuantGH.Rd | 2 man/cQuantGPD.Rd | 2 man/cQuantMOM.Rd | 2 man/cWeibullQQ.Rd | 2 man/cgenHill.Rd | 2 man/crHill.Rd | 2 man/crParetoQQ.Rd | 4 - man/genHill.Rd | 2 man/genQQ.Rd | 2 man/icHill.Rd | 2 man/icParetoQQ.Rd | 2 man/trDT.Rd | 2 man/trDTMLE.Rd | 2 man/trEndpoint.Rd | 2 man/trEndpointMLE.Rd | 2 man/trHill.Rd | 2 man/trMLE.Rd | 2 man/trParetoQQ.Rd | 2 man/trProb.Rd | 2 man/trProbMLE.Rd | 2 man/trQuant.Rd | 2 man/trQuantMLE.Rd | 2 man/trTest.Rd | 2 man/trTestMLE.Rd | 2 86 files changed, 182 insertions(+), 173 deletions(-)
Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for identification of B cell clones from
Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main
functions are included (identicalClones, hierarchicalClones, and spectralClones)
that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins)
which share the same V gene, J gene and junction length.
Nouri N and Kleinstein SH (2018) <doi: 10.1093/bioinformatics/bty235>.
Nouri N and Kleinstein SH (2019) <doi: 10.1101/788620>.
Gupta NT, et al. (2017) <doi: 10.4049/jimmunol.1601850>.
Author: Nima Nouri [aut],
Edel Aron [ctb],
Jason Vander Heiden [aut, cre],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@gmail.com>
Diff between scoper versions 0.2.0 dated 2019-08-05 and 1.0.0 dated 2020-05-16
scoper-0.2.0/scoper/man/defineClonesScoper.Rd |only scoper-1.0.0/scoper/DESCRIPTION | 42 scoper-1.0.0/scoper/MD5 | 38 scoper-1.0.0/scoper/NAMESPACE | 17 scoper-1.0.0/scoper/NEWS.md | 31 scoper-1.0.0/scoper/R/Data.R | 32 scoper-1.0.0/scoper/R/Functions.R | 1342 ++++++++++++++-------- scoper-1.0.0/scoper/R/Scoper.R | 49 scoper-1.0.0/scoper/README.md | 15 scoper-1.0.0/scoper/build/vignette.rds |binary scoper-1.0.0/scoper/data/ExampleDb.rda |binary scoper-1.0.0/scoper/inst/CITATION | 10 scoper-1.0.0/scoper/inst/doc/Scoper-Vignette.R | 105 - scoper-1.0.0/scoper/inst/doc/Scoper-Vignette.Rmd | 392 +++--- scoper-1.0.0/scoper/inst/doc/Scoper-Vignette.pdf |binary scoper-1.0.0/scoper/man/ExampleDb.Rd | 36 scoper-1.0.0/scoper/man/ScoperClones-class.Rd |only scoper-1.0.0/scoper/man/hierarchicalClones.Rd |only scoper-1.0.0/scoper/man/identicalClones.Rd |only scoper-1.0.0/scoper/man/plotCloneSummary.Rd |only scoper-1.0.0/scoper/man/scoper.Rd | 26 scoper-1.0.0/scoper/man/spectralClones.Rd |only scoper-1.0.0/scoper/vignettes/Scoper-Vignette.Rmd | 392 +++--- 23 files changed, 1493 insertions(+), 1034 deletions(-)
Title: Space-Time Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatio-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted estimators to improve population, change, and ratio estimates.
Author: Hunter Stanke [aut, cre],
Andrew Finley [aut]
Maintainer: Hunter Stanke <stankehu@msu.edu>
Diff between rFIA versions 0.2.2 dated 2020-04-27 and 0.2.3 dated 2020-05-16
rFIA-0.2.2/rFIA/man/figures/usBiomass.png |only rFIA-0.2.3/rFIA/DESCRIPTION | 9 rFIA-0.2.3/rFIA/MD5 | 58 +- rFIA-0.2.3/rFIA/NAMESPACE | 5 rFIA-0.2.3/rFIA/R/areaNew.R | 2 rFIA-0.2.3/rFIA/R/biomassNew.R | 5 rFIA-0.2.3/rFIA/R/carbon.R |only rFIA-0.2.3/rFIA/R/carbonHelper.R |only rFIA-0.2.3/rFIA/R/diversityHelper.R | 2 rFIA-0.2.3/rFIA/R/diversityNew.R | 2 rFIA-0.2.3/rFIA/R/dwmNew.R | 2 rFIA-0.2.3/rFIA/R/fsi.R | 66 ++- rFIA-0.2.3/rFIA/R/fsiHelper.R | 320 ++++++++++++++- rFIA-0.2.3/rFIA/R/functionsFIA.R | 4 rFIA-0.2.3/rFIA/R/globalVars.R | 8 rFIA-0.2.3/rFIA/R/growMortNew.R | 2 rFIA-0.2.3/rFIA/R/invasiveNew.R | 2 rFIA-0.2.3/rFIA/R/seedlingNew.R | 6 rFIA-0.2.3/rFIA/R/standStructNew.R | 2 rFIA-0.2.3/rFIA/R/sustIndex.R | 2 rFIA-0.2.3/rFIA/R/sustIndexHelper.R | 16 rFIA-0.2.3/rFIA/R/tpaNew.R | 6 rFIA-0.2.3/rFIA/R/vitalRatesNew.R | 2 rFIA-0.2.3/rFIA/README.md | 102 ++-- rFIA-0.2.3/rFIA/man/carbon.Rd |only rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-4-1.png |binary rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-5-1.png |binary rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-6-1.png |binary rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-7-1.png |binary rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-8-1.png |only rFIA-0.2.3/rFIA/man/figures/README-unnamed-chunk-9-1.gif |only rFIA-0.2.3/rFIA/man/figures/logo.png |only rFIA-0.2.3/rFIA/man/figures/usBiomass.jpg |only rFIA-0.2.3/rFIA/man/fsi.Rd | 6 34 files changed, 510 insertions(+), 119 deletions(-)
Title: 'NatureServe' Interface
Description: Interface to 'NatureServe' (<https://www.natureserve.org/>).
Includes methods to get data, image metadata, search taxonomic names,
and make maps.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between natserv versions 0.4.0 dated 2020-04-17 and 1.0.0 dated 2020-05-16
natserv-0.4.0/natserv/R/ns_data.R |only natserv-0.4.0/natserv/R/ns_images.R |only natserv-0.4.0/natserv/R/ns_map.R |only natserv-0.4.0/natserv/R/ns_search.R |only natserv-0.4.0/natserv/man/ns_data.Rd |only natserv-0.4.0/natserv/man/ns_images.Rd |only natserv-0.4.0/natserv/man/ns_map.Rd |only natserv-0.4.0/natserv/man/ns_search.Rd |only natserv-0.4.0/natserv/tests/fixtures/ns_data.yml |only natserv-0.4.0/natserv/tests/fixtures/ns_data_fixed.yml |only natserv-0.4.0/natserv/tests/fixtures/ns_images.yml |only natserv-0.4.0/natserv/tests/fixtures/ns_images_error.yml |only natserv-0.4.0/natserv/tests/fixtures/ns_search.yml |only natserv-0.4.0/natserv/tests/fixtures/ns_search_error.yml |only natserv-0.4.0/natserv/tests/testthat/helper_data.R |only natserv-0.4.0/natserv/tests/testthat/ns_data_output.rda |only natserv-0.4.0/natserv/tests/testthat/test-internal_tooling.R |only natserv-0.4.0/natserv/tests/testthat/test-ns_data.R |only natserv-0.4.0/natserv/tests/testthat/test-ns_images.R |only natserv-0.4.0/natserv/tests/testthat/test-ns_map.R |only natserv-0.4.0/natserv/tests/testthat/test-ns_search.R |only natserv-1.0.0/natserv/DESCRIPTION | 12 natserv-1.0.0/natserv/MD5 | 80 - natserv-1.0.0/natserv/NAMESPACE | 18 natserv-1.0.0/natserv/NEWS.md | 8 natserv-1.0.0/natserv/R/http.R | 31 natserv-1.0.0/natserv/R/natserv-package.R | 3 natserv-1.0.0/natserv/R/ns_altid.R |only natserv-1.0.0/natserv/R/ns_ecohier.R |only natserv-1.0.0/natserv/R/ns_export.R |only natserv-1.0.0/natserv/R/ns_id.R |only natserv-1.0.0/natserv/R/ns_search_comb.R |only natserv-1.0.0/natserv/R/ns_search_eco.R |only natserv-1.0.0/natserv/R/ns_search_spp.R |only natserv-1.0.0/natserv/R/search_helpers.R |only natserv-1.0.0/natserv/R/zzz.R | 61 natserv-1.0.0/natserv/README.md | 107 - natserv-1.0.0/natserv/build/vignette.rds |binary natserv-1.0.0/natserv/inst/doc/natserv.Rmd | 754 +++++------ natserv-1.0.0/natserv/inst/doc/natserv.html | 639 ++++----- natserv-1.0.0/natserv/man/ns_altid.Rd |only natserv-1.0.0/natserv/man/ns_ecohier.Rd |only natserv-1.0.0/natserv/man/ns_export.Rd |only natserv-1.0.0/natserv/man/ns_id.Rd |only natserv-1.0.0/natserv/man/ns_search_comb.Rd |only natserv-1.0.0/natserv/man/ns_search_eco.Rd |only natserv-1.0.0/natserv/man/ns_search_spp.Rd |only natserv-1.0.0/natserv/tests/fixtures/ns_altid.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_ecohier.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_export.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_export_status.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_id.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_search_comb.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_search_eco.yml |only natserv-1.0.0/natserv/tests/fixtures/ns_search_spp.yml |only natserv-1.0.0/natserv/tests/test-all.R | 2 natserv-1.0.0/natserv/tests/testthat/helper-natserv.R | 5 natserv-1.0.0/natserv/tests/testthat/test-ns_altid.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_ecohier.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_export.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_id.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_search_comb.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_search_eco.R |only natserv-1.0.0/natserv/tests/testthat/test-ns_search_spp.R |only natserv-1.0.0/natserv/tests/testthat/test-utils.R |only natserv-1.0.0/natserv/vignettes/natserv.Rmd | 754 +++++------ natserv-1.0.0/natserv/vignettes/natserv.Rmd.og | 378 +---- 67 files changed, 1216 insertions(+), 1636 deletions(-)
Title: Relevance-Integrated Statistical Inference Engine
Description: A framework of methods to perform customized inference at individual level
by taking contextual covariates into account. Three main functions are provided
in this package: (i) LASER(): it generates specially-designed artificial relevant
samples for a given case; (ii) g2l.proc(): computes customized fdr(z|x); and (iii)
rEB.proc(): performs empirical Bayes inference based on LASERs. The details can be
found in Mukhopadhyay, S., and Wang, K (2020, Technical Report).
Author: Subhadeep Mukhopadhyay, Kaijun Wang
Maintainer: Kaijun Wang <kaijunwang.19@gmail.com>
Diff between LPRelevance versions 3.0 dated 2020-03-29 and 3.1 dated 2020-05-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/g2l.infer.R | 23 +++++++++++++++++------ build/partial.rdb |binary man/LASER.Rd | 4 ++-- man/LPRelevance-package.Rd | 4 ++-- man/g2l.proc.Rd | 8 ++++---- man/rEB.proc.Rd | 4 ++-- 8 files changed, 39 insertions(+), 28 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Description: Contains:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear contrasts.
3) Miscellaneous other utilities.
Author: Søren Højsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.5 dated 2020-02-21 and 4.6.6 dated 2020-05-16
doBy-4.6.5/doBy/R/BY-lapplyBy.R |only doBy-4.6.5/doBy/R/BY-lmBy.R |only doBy-4.6.5/doBy/R/BY-orderBy.R |only doBy-4.6.5/doBy/R/BY-sampleBy.R |only doBy-4.6.5/doBy/R/BY-splitBy2.R |only doBy-4.6.5/doBy/R/BY-subsetBy.R |only doBy-4.6.5/doBy/R/BY-summaryBy2.R |only doBy-4.6.5/doBy/R/BY-transformBy.R |only doBy-4.6.5/doBy/R/namespace.R |only doBy-4.6.6/doBy/ChangeLog | 4 + doBy-4.6.6/doBy/DESCRIPTION | 12 +-- doBy-4.6.6/doBy/MD5 | 95 ++++++++++++++-------------- doBy-4.6.6/doBy/NAMESPACE | 13 ++- doBy-4.6.6/doBy/NEWS | 12 +++ doBy-4.6.6/doBy/R/NAMESPACE.R |only doBy-4.6.6/doBy/R/by-lapplyBy.R |only doBy-4.6.6/doBy/R/by-lmBy.R |only doBy-4.6.6/doBy/R/by-orderBy.R |only doBy-4.6.6/doBy/R/by-sampleBy.R |only doBy-4.6.6/doBy/R/by-splitBy.R |only doBy-4.6.6/doBy/R/by-subsetBy.R |only doBy-4.6.6/doBy/R/by-summaryBy.R |only doBy-4.6.6/doBy/R/by-transformBy.R |only doBy-4.6.6/doBy/R/esticon.R | 52 ++++----------- doBy-4.6.6/doBy/R/linest_LSmeans.R | 23 ++---- doBy-4.6.6/doBy/R/linest_compute.R | 82 ++++-------------------- doBy-4.6.6/doBy/R/tidy.R |only doBy-4.6.6/doBy/R/timeSinceEvent.R | 2 doBy-4.6.6/doBy/build/vignette.rds |binary doBy-4.6.6/doBy/inst/doc/doby.pdf |binary doBy-4.6.6/doBy/inst/doc/linest-lsmeans.pdf |binary doBy-4.6.6/doBy/man/NIRmilk.Rd | 6 + doBy-4.6.6/doBy/man/beets.Rd | 4 - doBy-4.6.6/doBy/man/breastcancer.Rd | 6 + doBy-4.6.6/doBy/man/budworm.Rd | 6 + doBy-4.6.6/doBy/man/by-lapply.Rd | 9 +- doBy-4.6.6/doBy/man/by-lmby.Rd | 22 ++---- doBy-4.6.6/doBy/man/by-order.Rd | 9 +- doBy-4.6.6/doBy/man/by-sample.Rd | 11 ++- doBy-4.6.6/doBy/man/by-split.Rd | 9 +- doBy-4.6.6/doBy/man/by-subset.Rd | 9 +- doBy-4.6.6/doBy/man/by-summary.Rd | 21 +++++- doBy-4.6.6/doBy/man/by-transform.Rd | 11 ++- doBy-4.6.6/doBy/man/carcass.Rd | 6 + doBy-4.6.6/doBy/man/codstom.Rd | 6 + doBy-4.6.6/doBy/man/crimeRate.Rd | 6 + doBy-4.6.6/doBy/man/cropyield.Rd | 6 + doBy-4.6.6/doBy/man/dietox.Rd | 6 + doBy-4.6.6/doBy/man/esticon.Rd | 31 --------- doBy-4.6.6/doBy/man/fatacid.Rd | 6 + doBy-4.6.6/doBy/man/fev.Rd | 6 + doBy-4.6.6/doBy/man/firstlastobs.Rd | 2 doBy-4.6.6/doBy/man/haldCement.Rd | 8 +- doBy-4.6.6/doBy/man/linest.Rd | 12 --- doBy-4.6.6/doBy/man/ls-means.Rd | 10 -- doBy-4.6.6/doBy/man/milkman.Rd | 6 + doBy-4.6.6/doBy/man/potatoes.Rd | 6 + doBy-4.6.6/doBy/man/tidy-esticon.Rd |only doBy-4.6.6/doBy/man/tidy-linest.Rd |only 59 files changed, 249 insertions(+), 286 deletions(-)
Title: R Interface to Qiita API
Description: Qiita is a technical knowledge sharing and collaboration platform for programmers.
See <https://qiita.com/api/v2/docs> for more information.
Author: Hiroaki Yutani [aut, cre] (<https://orcid.org/0000-0002-3385-7233>)
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between qiitr versions 0.1.0 dated 2016-11-12 and 0.1.1 dated 2020-05-16
qiitr-0.1.0/qiitr/R/qiitr-package.r |only qiitr-0.1.1/qiitr/DESCRIPTION | 18 - qiitr-0.1.1/qiitr/MD5 | 36 +- qiitr-0.1.1/qiitr/NAMESPACE | 62 ++-- qiitr-0.1.1/qiitr/NEWS.md | 4 qiitr-0.1.1/qiitr/R/qiitr-package.R |only qiitr-0.1.1/qiitr/R/util.r | 4 qiitr-0.1.1/qiitr/README.md | 11 qiitr-0.1.1/qiitr/man/qiita_api.Rd | 67 ++-- qiitr-0.1.1/qiitr/man/qiita_auth.Rd | 33 +- qiitr-0.1.1/qiitr/man/qiita_comment.Rd | 100 +++--- qiitr-0.1.1/qiitr/man/qiita_item.Rd | 197 +++++++------ qiitr-0.1.1/qiitr/man/qiita_tag.Rd | 102 +++--- qiitr-0.1.1/qiitr/man/qiita_user.Rd | 134 ++++---- qiitr-0.1.1/qiitr/man/qiita_util.Rd | 102 +++--- qiitr-0.1.1/qiitr/man/qiitr-package.Rd | 38 +- qiitr-0.1.1/qiitr/tests/testthat/test-qiita_get_comments.R | 4 qiitr-0.1.1/qiitr/tests/testthat/test-qiita_get_items.R | 6 qiitr-0.1.1/qiitr/tests/testthat/test-qiita_get_tags.R | 8 qiitr-0.1.1/qiitr/tests/testthat/test-qiita_get_users.R | 6 20 files changed, 512 insertions(+), 420 deletions(-)
Title: Feature Ordering by Conditional Independence
Description: Feature Ordering by Conditional Independence (FOCI) is a variable selection algorithm based on the measure of conditional dependence.
For more information, see the paper: Azadkia and Chatterjee (2019),"A simple measure of conditional dependence" <arXiv:1910.12327>.
Author: Mona Azadkia [aut, cre],
Sourav Chatterjee [aut, ctb],
Norman Matloff [aut, ctb]
Maintainer: Mona Azadkia <monaazadkia@gmail.com>
Diff between FOCI versions 0.1.1 dated 2020-01-07 and 0.1.2 dated 2020-05-16
DESCRIPTION | 19 +-- MD5 | 33 ++--- NAMESPACE | 2 R/DotEqual.R |only R/codec.R | 46 +------ R/codecInternal.R | 77 ++++-------- R/foci.R | 319 ++++++++++++++++++++++++++++++++++++++++------------ build/vignette.rds |binary inst/doc/codec.R | 48 ++++--- inst/doc/codec.Rmd | 57 +++++---- inst/doc/codec.html | 77 +++++++----- inst/doc/foci.R | 12 + inst/doc/foci.Rmd | 16 +- inst/doc/foci.html | 39 ++++-- man/codec.Rd | 16 +- man/foci.Rd | 110 ++++++++++++++--- vignettes/codec.Rmd | 57 +++++---- vignettes/foci.Rmd | 16 +- 18 files changed, 612 insertions(+), 332 deletions(-)