Title: Algorithm to Compute Monitor Independent Movement Summary Unit
(MIMS-Unit)
Description: The MIMS-unit algorithm is developed to compute Monitor Independent
Movement Summary Unit, a measurement to summarize raw accelerometer data
while ensuring harmonized results across different devices. It also includes
scripts to reproduce results in the related publication
(John, D., Tang. Q., Albinali, F. and Intille, S. (2019) <doi:10.1123/jmpb.2018-0068>).
Author: Qu Tang [aut, cre] (<https://orcid.org/0000-0001-5415-0205>),
Dinesh John [aut],
Stephen Intille [aut],
mHealth Research Group [cph] (https://mhealthgroup.org)
Maintainer: Qu Tang <tang.q@northeastern.edu>
Diff between MIMSunit versions 0.9.0 dated 2020-04-25 and 0.9.1 dated 2020-05-20
DESCRIPTION | 13 LICENSE | 2 MD5 | 70 NAMESPACE | 77 NEWS.md | 342 R/aggregate_over_epoch.R | 542 R/app.R |only R/combine_axes.R | 254 R/data.R | 206 R/export_data.R | 220 R/extrapolate.R | 1314 +- R/extrapolate_rate.R | 98 R/filter.R | 856 - R/helper.R | 524 R/import_data.R | 1794 +- R/interpolate.R | 214 R/mims_unit.R | 1270 +- R/orientation.R | 164 R/plotting.R | 650 - R/simulate_data.R | 206 README.md | 199 inst/CITATION | 28 inst/app |only inst/extdata/actigraph.csv |20000 ++++++++++++++++----------------- inst/extdata/actigraph_count.csv | 5514 ++++----- inst/extdata/actigraph_timestamped.csv |10000 ++++++++-------- inst/extdata/activpal3.csv |10000 ++++++++-------- inst/extdata/enmo.csv | 1000 - inst/extdata/mhealth.csv |10002 ++++++++-------- inst/extdata/mhealth1.csv |10002 ++++++++-------- man/custom_mims_unit.Rd | 3 man/extrapolate.Rd | 186 man/mims_unit.Rd | 287 man/sensor_orientations.Rd | 3 man/shiny_app.Rd |only tests/testthat.R | 8 tests/testthat/test-helper.R | 16 37 files changed, 38049 insertions(+), 38015 deletions(-)
Title: Medical Data Analysis Pack
Description: An implementation of functions for medical data analysis which perform basic data pre processing,
univariate and bivariate analysis.Kirkwood et al. (2003) <doi:10.1002/sim.1961>.
Author: Henry Nanji [aut, cre],
Saisakul Chernbumroong [aut]
Maintainer: Henry Nanji <henry.nanji@nottingham.ac.uk>
Diff between mdapack versions 0.0.1 dated 2020-03-14 and 0.0.2 dated 2020-05-20
DESCRIPTION | 19 +++++----- LICENSE | 4 +- MD5 | 38 ++++++++++++++------ NAMESPACE | 10 ++++- R/boxplotGroup.R |only R/checkValidity.R |only R/checkVariableNames.R |only R/correctType.R |only R/discretize.R |only R/missingAnalysis.R |only R/mutualInfo.R |only R/outlier_detection.R |only R/plotHeatmapGroup.R | 21 +++++------ R/univariateAnalysis.R | 46 ++++++++++--------------- build/vignette.rds |binary inst/doc/Introduction.Rmd | 9 ++++ inst/doc/Introduction.html | 2 - man/checkValidity.Rd |only man/checkVariableNames.Rd |only man/correctType.Rd |only man/discretize.Rd |only man/missingAnalysis.Rd |only man/mutualInfo.Rd |only man/outlier_detection.Rd |only man/plotBoxplotGroup.Rd |only man/plotHeatmapGroup.Rd | 50 ++++++++++++--------------- man/univariateAnalysis.Rd | 82 ++++++++++++++++++++++----------------------- vignettes/Introduction.Rmd | 9 ++++ 28 files changed, 157 insertions(+), 133 deletions(-)
Title: Implementation Helper for '[' and '[<-' of Custom Matrix-Like
Types
Description: Functions to help implement the extraction / subsetting / indexing
function '[' and replacement function '[<-' of custom matrix-like types
(based on S3, S4, etc.), modeled as closely to the base matrix class as
possible (with tests to prove it).
Author: Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <cran@agrueneberg.info>
Diff between crochet versions 2.2.0 dated 2019-06-13 and 2.3.0 dated 2020-05-20
crochet-2.2.0/crochet/tests/testthat |only crochet-2.2.0/crochet/tests/testthat.R |only crochet-2.3.0/crochet/DESCRIPTION | 12 crochet-2.3.0/crochet/MD5 | 43 crochet-2.3.0/crochet/NEWS.md | 13 crochet-2.3.0/crochet/R/crochet.R | 6 crochet-2.3.0/crochet/README.md | 1 crochet-2.3.0/crochet/build/partial.rdb |binary crochet-2.3.0/crochet/build/vignette.rds |binary crochet-2.3.0/crochet/inst/doc/StringMatrix.R | 16 crochet-2.3.0/crochet/inst/doc/StringMatrix.Rmd | 2 crochet-2.3.0/crochet/inst/doc/StringMatrix.html | 369 ++++---- crochet-2.3.0/crochet/inst/test-suite/crochet-extract.R | 603 ++++++------- crochet-2.3.0/crochet/inst/test-suite/crochet-replace.R | 694 +++++++--------- crochet-2.3.0/crochet/inst/tinytest |only crochet-2.3.0/crochet/man/convertIndex.Rd | 50 - crochet-2.3.0/crochet/man/crochet-package.Rd | 53 - crochet-2.3.0/crochet/man/extract.Rd | 75 - crochet-2.3.0/crochet/man/ijtok.Rd | 30 crochet-2.3.0/crochet/man/ktoij.Rd | 24 crochet-2.3.0/crochet/man/replace.Rd | 72 - crochet-2.3.0/crochet/tests/tinytest.R |only crochet-2.3.0/crochet/vignettes/StringMatrix.Rmd | 2 23 files changed, 980 insertions(+), 1085 deletions(-)
Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new adaptation of a technique based on ranks which can guarantee
normally distributed transformed data if there are no ties: ordered
quantile normalization (ORQ). ORQ normalization combines a rank-mapping
approach with a shifted logit approximation that allows
the transformation to work on data outside the original domain. It is
also able to handle new data within the original domain via linear
interpolation. The package is built to estimate the best normalizing
transformation for a vector consistently and accurately. It implements
the Box-Cox transformation, the Yeo-Johnson transformation, three types
of Lambert WxF transformations, and the ordered quantile normalization
transformation. It also estimates the normalization efficacy of other
commonly used transformations, and finally it allows users to specify
custom transformations or normalization statistics.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between bestNormalize versions 1.5.0 dated 2020-04-18 and 1.6.0 dated 2020-05-20
DESCRIPTION | 13 +- MD5 | 28 ++-- NAMESPACE | 1 NEWS.md | 7 + R/bestNormalize.R | 191 +++++++++++++++++++----------- R/no_transform.R | 26 ---- build/vignette.rds |binary inst/doc/bestNormalize.html | 82 ++++++------ inst/doc/customization.R |only inst/doc/customization.Rmd |only inst/doc/customization.html |only man/bestNormalize.Rd | 24 +++ man/no_transform.Rd | 12 - tests/testthat/test_bn_custom_normstat.R |only tests/testthat/test_bn_parallel.R | 196 ++++++++++++++++++++++++++++++- tests/testthat/test_custom_fn.R |only tests/testthat/test_no_transform.R | 30 ---- vignettes/customization.Rmd |only 18 files changed, 418 insertions(+), 192 deletions(-)
Title: An Implementation of Grammar of Graphics for Graphs and Networks
Description: The grammar of graphics as implemented in ggplot2 is a poor fit for
graph and network visualizations due to its reliance on tabular data input.
ggraph is an extension of the ggplot2 API tailored to graph visualizations
and provides the same flexible approach to building up plots layer by layer.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggraph versions 2.0.2 dated 2020-03-17 and 2.0.3 dated 2020-05-20
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 5 R/geom_edge_elbow.R | 4 build/vignette.rds |binary inst/doc/Edges.html | 310 ++++++++++++++++++++++++------------------------ inst/doc/Layouts.html | 252 +++++++++++++++++++-------------------- inst/doc/Nodes.html | 100 +++++++-------- inst/doc/tidygraph.html | 100 +++++++-------- 9 files changed, 403 insertions(+), 390 deletions(-)
Title: Empirical Likelihood Ratio for Censored/Truncated Data
Description: Empirical likelihood ratio tests for means/quantiles/hazards
from possibly censored and/or truncated data. Now does regression too.
This version contains some C code.
Author: Mai Zhou. (Art Owen for el.test(). Yifan Yang for some C code.)
Maintainer: Mai Zhou <mai@ms.uky.edu>
Diff between emplik versions 1.0-4.3 dated 2018-08-17 and 1.1-1 dated 2020-05-20
DESCRIPTION | 8 ++++---- MD5 | 45 ++++++++++++++++++++++++++++----------------- NAMESPACE | 4 ++-- R/el.cen.EM.R | 2 +- R/el.cen.EM2.R | 2 +- R/emplikH1B.R |only R/emplikH1P.R |only R/emplikH2B.R |only R/emplikH2P.R |only R/emplikHs.disc2.R | 4 ++-- R/emplikHs.test2.R | 4 ++-- R/kmc.clean.R |only R/omega.lambda.R |only README | 5 +---- man/el.cen.EM.Rd | 10 ++++++---- man/el.cen.EM2.Rd | 2 +- man/emplik-internal.Rd | 5 +++++ man/emplik-package.Rd |only man/emplikH.disc2.Rd | 2 +- man/emplikH1B.Rd |only man/emplikH1P.Rd |only man/emplikH2B.Rd |only man/emplikH2P.Rd |only man/emplikHs.test2.Rd | 4 ++++ man/findUL.Rd | 3 ++- man/findULold.Rd | 2 +- man/myeloma.Rd | 4 ++-- man/smallcell.Rd | 11 +++++++++-- src/init.c | 2 +- 29 files changed, 73 insertions(+), 46 deletions(-)
Title: Simulation-Based Inference Methods for Infectious Disease Models
Description: Provides some code to run simulations of state-space models, and then
use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC)
algorithm of Toni et al. (2009) <doi:10.1098/rsif.2008.0172> and a bootstrap particle
filter based particle Markov chain Monte Carlo (PMCMC) algorithm
(Andrieu et al., 2010 <doi:10.1111/j.1467-9868.2009.00736.x>).
Also provides functions to plot and summarise the outputs.
Author: Trevelyan J. McKinley [aut, cre],
Stefan Widgren [aut] (Author of 'R/mparse.R'),
Pavol Bauer [cph] (R/mparse.R),
Robin Eriksson [cph] (R/mparse.R),
Stefan Engblom [cph] (R/mparse.R)
Maintainer: Trevelyan J. McKinley <t.mckinley@exeter.ac.uk>
Diff between SimBIID versions 0.1.4 dated 2020-03-03 and 0.2.0 dated 2020-05-20
DESCRIPTION | 8 - MD5 | 34 +++-- NEWS.md | 13 ++ R/ABCRef.R | 6 R/ABCSMC.R | 89 ++++++++++++-- R/bisectTols.R |only R/checkInputs.R | 8 + R/run.R | 4 man/ABCSMC.Rd | 13 +- man/ebola.Rd | 6 man/smallpox.Rd | 6 tests/testthat/ABCSMC | 6 tests/testthat/ABCSMC1 | 6 tests/testthat/ABCSMCsum | 6 tests/testthat/ABCSMCtol |only tests/testthat/ABCSMCtol1 |only tests/testthat/ABCSMCtol2 |only tests/testthat/test-ABCRef.R | 61 ++++++++++ tests/testthat/test-ABCSMC.R | 261 +++++++++++++++++++++++++++++++++++++++++++ tests/testthat/test-run.R | 101 ++++++++++++++++ 20 files changed, 577 insertions(+), 51 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.5.3 dated 2020-04-08 and 0.5.4 dated 2020-05-20
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/create_ssml.R | 24 ++++++++++++++++++++---- R/ms_synthesize.R | 5 ++++- man/ms_create_ssml.Rd | 12 +++++++++++- tests/testthat/test-locales.R | 4 ++-- tests/testthat/test-ssml.R |only 8 files changed, 51 insertions(+), 17 deletions(-)
Title: Automatic Item Generator for Quantitative Multiple-Choice Items
Description: A tool for automatic generation of sibling items from a parent item model defined by
the user. It is an implementation of the process automatic item generation (AIG) focused
on generating quantitative multiple-choice type of items (see Embretson, Kingston
(2018) <doi:10.1111/jedm.12166>).
Author: Subhabrata Patra (Shubh) [aut, cre],
Bao Sheng Loe (Aiden) [aut]
Maintainer: Subhabrata Patra (Shubh) <shubh.b.patra@gmail.com>
Diff between QAIG versions 0.1.5 dated 2019-03-17 and 0.1.7 dated 2020-05-20
DESCRIPTION | 10 MD5 | 14 R/itemgen_function.R | 22 build/vignette.rds |binary inst/doc/qaig-introduction.Rmd | 8 inst/doc/qaig-introduction.html | 897 ++++++++++++++++++++++++---------------- man/itemgen.Rd | 21 vignettes/qaig-introduction.Rmd | 8 8 files changed, 599 insertions(+), 381 deletions(-)
Title: Construct Modeling Packages
Description: Building modeling packages is hard. A large amount of effort
generally goes into providing an implementation for a new method that is
efficient, fast, and correct, but often less emphasis is put on the user
interface. A good interface requires specialized knowledge about S3 methods
and formulas, which the average package developer might not have.
The goal of 'hardhat' is to reduce the burden around building new modeling
packages by providing functionality for preprocessing, predicting, and
validating input.
Author: Davis Vaughan [aut, cre],
Max Kuhn [aut],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between hardhat versions 0.1.2 dated 2020-02-28 and 0.1.3 dated 2020-05-20
DESCRIPTION | 10 MD5 | 23 NEWS.md | 12 R/scream.R | 85 ++- README.md | 2 build/hardhat.pdf |binary inst/doc/forge.html | 602 +++++++++++++------------ inst/doc/mold.html | 690 +++++++++++++++-------------- inst/doc/package.html | 843 ++++++++++++++++++------------------ man/figures/factor-handling.png |only man/scream.Rd | 19 tests/testthat/test-forge-formula.R | 164 ++++--- tests/testthat/test-scream.R | 2 13 files changed, 1287 insertions(+), 1165 deletions(-)
Title: File Conversion for 'Gem Infrasound Logger'
Description: Reads data files from the 'Gem infrasound logger' for analysis and converts to segy format (which is convenient for reading with traditional seismic analysis software). The Gem infrasound logger is a low-cost, lightweight, low-power instrument for recording infrasound in field campaigns; email the maintainer for more information.
Author: Jake Anderson
Maintainer: Jake Anderson <ajakef@gmail.com>
Diff between gemlog versions 0.36 dated 2019-06-20 and 0.40 dated 2020-05-20
gemlog-0.36/gemlog/man/gemlog_metadata.Rd |only gemlog-0.40/gemlog/DESCRIPTION | 8 - gemlog-0.40/gemlog/MD5 | 33 +++--- gemlog-0.40/gemlog/NAMESPACE | 2 gemlog-0.40/gemlog/R/Convert.R | 32 +++--- gemlog-0.40/gemlog/R/Gem2Segy.R | 31 ++---- gemlog-0.40/gemlog/R/InterpTime.R | 75 +++++++-------- gemlog-0.40/gemlog/R/ReadGem.R | 59 +++++++++--- gemlog-0.40/gemlog/R/ReadGem_v0.8.R | 2 gemlog-0.40/gemlog/R/ReadGem_v0.85.R | 8 + gemlog-0.40/gemlog/R/ReadGem_v0.85C.R | 139 +++++++++++++++++++++-------- gemlog-0.40/gemlog/R/ReadGem_v0.9.R |only gemlog-0.40/gemlog/R/ScanMetadata.R | 14 ++ gemlog-0.40/gemlog/R/sysdata.rda |binary gemlog-0.40/gemlog/build/partial.rdb |binary gemlog-0.40/gemlog/data/GemSpecs.RData |binary gemlog-0.40/gemlog/data/gem_metadata.RData |binary gemlog-0.40/gemlog/man/Convert.Rd | 9 - gemlog-0.40/gemlog/man/gem_metadata.Rd |only 19 files changed, 260 insertions(+), 152 deletions(-)
Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I
clinical trial design for finding the maximum tolerated dose (MTD). It can be
used to design both single-agent and drug-combination trials. The BOIN design
is motivated by the top priority and concern of clinicians when testing a new
drug, which is to effectively treat patients and minimize the chance of exposing
them to subtherapeutic or overly toxic doses. The prominent advantage of the
BOIN design is that it achieves simplicity and superior performance at the same
time. The BOIN design is algorithm-based and can be implemented in a simple
way similar to the traditional 3+3 design. The BOIN design yields an average
performance that is comparable to that of the continual reassessment method
(CRM, one of the best model-based designs) in terms of selecting the MTD, but
has a substantially lower risk of assigning patients to subtherapeutic or overly
toxic doses.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>
Diff between BOIN versions 2.6.4 dated 2018-10-12 and 2.6.5 dated 2020-05-20
BOIN-2.6.4/BOIN/R/BOIN.R |only BOIN-2.6.5/BOIN/DESCRIPTION | 12 BOIN-2.6.5/BOIN/MD5 | 43 BOIN-2.6.5/BOIN/NAMESPACE | 36 BOIN-2.6.5/BOIN/R/get.boundary.R | 196 ++- BOIN-2.6.5/BOIN/R/get.oc.R | 300 +++-- BOIN-2.6.5/BOIN/R/get.oc.comb.R | 1869 ++++++++++++++++----------------- BOIN-2.6.5/BOIN/R/next.comb.R | 272 ++-- BOIN-2.6.5/BOIN/R/next.subtrial.R | 376 +++--- BOIN-2.6.5/BOIN/R/plot.boin.R | 1162 ++++++++++++++------ BOIN-2.6.5/BOIN/R/print.boin.R |only BOIN-2.6.5/BOIN/R/select.mtd.R | 95 - BOIN-2.6.5/BOIN/R/select.mtd.comb.R | 195 +-- BOIN-2.6.5/BOIN/R/summary.boin.R | 414 +++---- BOIN-2.6.5/BOIN/man/get.boundary.Rd | 253 ++-- BOIN-2.6.5/BOIN/man/get.oc.Rd | 269 ++-- BOIN-2.6.5/BOIN/man/get.oc.comb.Rd | 351 +++--- BOIN-2.6.5/BOIN/man/next.comb.Rd | 165 +- BOIN-2.6.5/BOIN/man/next.subtrial.Rd | 171 +-- BOIN-2.6.5/BOIN/man/plot.boin.Rd | 204 +-- BOIN-2.6.5/BOIN/man/print.boin.Rd |only BOIN-2.6.5/BOIN/man/select.mtd.Rd | 159 +- BOIN-2.6.5/BOIN/man/select.mtd.comb.Rd | 204 +-- BOIN-2.6.5/BOIN/man/summary.boin.Rd | 239 ++-- 24 files changed, 3830 insertions(+), 3155 deletions(-)
Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Pavlo Mozharovskyi [aut],
Yaryna Kolomiytseva [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@brunel.ac.uk>
Diff between npsf versions 0.5.2 dated 2019-09-08 and 0.6.0 dated 2020-05-20
ChangeLog | 11 DESCRIPTION | 14 MD5 | 44 +- NAMESPACE | 2 R/npsf-internal.R | 132 +++++- R/tenonradial.R | 26 - R/tenonradialbc.R |only man/coef.npsf.Rd | 2 man/nobs.npsf.Rd | 2 man/npsf-package.Rd | 16 man/nptestind.Rd | 4 man/nptestrts.Rd | 4 man/sf.Rd | 4 man/summary.npsf.Rd | 4 man/tenonradial.Rd | 21 - man/tenonradialbc.Rd |only man/teradial.Rd | 4 man/teradialbc.Rd | 4 man/truncreg.Rd | 4 man/vcov.npsf.Rd | 2 src/init.c | 4 src/nllpk/simplexMethod.cpp | 205 ++++++++- src/nllpk/simplexMethod.h | 2 src/nonradial.cpp | 908 +++++++++++++++++++++++++++----------------- 24 files changed, 954 insertions(+), 465 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/master/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Colin Rundel [ctb],
Andy Teucher [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.2-3 dated 2020-04-12 and 0.2-4 dated 2020-05-20
DESCRIPTION | 10 +++++----- MD5 | 25 +++++++++++++------------ NEWS.md | 16 ++++++++++++++++ R/RcppExports.R | 8 ++++++++ R/init.R | 11 +++++++++++ TODO |only configure | 46 ++++++++++++++-------------------------------- configure.ac | 30 +++++++++++++----------------- man/st_transform_proj.Rd | 2 +- src/Makevars.win | 15 +++++++-------- src/RcppExports.cpp | 24 ++++++++++++++++++++++++ src/postgis_config.win | 4 ++-- src/proj.cpp | 22 ++++++++++++++++++++++ tools/winlibs.R | 8 +++++--- 14 files changed, 141 insertions(+), 80 deletions(-)
Title: Dams in the United States from the National Inventory of Dams
(NID)
Description: The single largest source of dams in the United States is the
National Inventory of Dams (NID) <http://nid.usace.army.mil> from the US
Army Corps of Engineers. Entire data from the NID cannot be obtained all at
once and NID's website limits extraction of more than a couple of thousand
records at a time. Moreover, selected data from the NID's user interface
cannot not be saved to a file. In order to make the analysis of this data
easier, all the data from NID was extracted manually. Subsequently, the raw
data was checked for potential errors and cleaned. This package provides
sample cleaned data from the NID and provides functionality to access the
entire cleaned NID data.
Author: Gopi Goteti [aut],
Joseph Stachelek [aut, cre]
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between dams versions 0.2 dated 2016-11-05 and 0.3.0 dated 2020-05-20
dams-0.2/dams/R/data.r |only dams-0.2/dams/R/extract_nid.r |only dams-0.2/dams/data/datalist |only dams-0.2/dams/data/nid_cleaned.rda |only dams-0.2/dams/man/dams.Rd |only dams-0.2/dams/man/nid_cleaned.Rd |only dams-0.3.0/dams/DESCRIPTION | 14 dams-0.3.0/dams/MD5 | 34 - dams-0.3.0/dams/NAMESPACE | 9 dams-0.3.0/dams/NEWS.md | 14 dams-0.3.0/dams/R/dams-package.R |only dams-0.3.0/dams/R/get_nid.R |only dams-0.3.0/dams/README.md | 29 - dams-0.3.0/dams/build/vignette.rds |binary dams-0.3.0/dams/data/nid_subset.rda |only dams-0.3.0/dams/inst/doc/dams.R | 44 +- dams-0.3.0/dams/inst/doc/dams.Rmd | 29 - dams-0.3.0/dams/inst/doc/dams.html | 583 +++++++++++++++++++---------- dams-0.3.0/dams/man/dams-package.Rd |only dams-0.3.0/dams/man/get_nid.Rd | 19 dams-0.3.0/dams/man/nid_all.Rd |only dams-0.3.0/dams/man/nid_subset.Rd |only dams-0.3.0/dams/tests/testthat/test-dams.R | 2 dams-0.3.0/dams/vignettes/dams.Rmd | 29 - 24 files changed, 505 insertions(+), 301 deletions(-)
Title: Moran Eigenvector-Based Scalable Spatial Additive Mixed Modeling
Description: Functions for estimating Moran eigenvector-based
spatial additive mixed models, and other spatial regression models.
For details see Murakami (2020) <arXiv:1703.04467>.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.1.7.2 dated 2019-12-11 and 0.2.0 dated 2020-05-20
DESCRIPTION | 20 MD5 | 70 - NAMESPACE | 60 + R/besf.R | 281 ++---- R/besf_vc.R | 2047 ++++++++++++++++++++++++++++++++++--------------- R/esf.R | 28 R/lsem.R | 340 ++++---- R/lslm.R | 643 ++++++++------- R/meigen.R | 117 +- R/meigen0.R | 77 + R/meigen_f.R | 126 +-- R/plot_n.R |only R/plot_qr.R | 74 - R/plot_s.R |only R/predict0.R | 321 +++++-- R/predict0_vc.R | 614 ++++++++++---- R/resf.R | 315 ++----- R/resf_qr.R | 668 ++++++++++----- R/resf_vc.R | 2021 ++++++++++++++++++++++++++++++++---------------- build/vignette.rds |binary inst/doc/vignettes.pdf |binary man/besf.Rd | 53 - man/besf_vc.Rd | 125 ++ man/esf.Rd | 18 man/lsem.Rd | 12 man/lslm.Rd | 12 man/meigen.Rd | 15 man/meigen0.Rd | 13 man/meigen_f.Rd | 15 man/plot_n.Rd |only man/plot_qr.Rd | 8 man/plot_s.Rd |only man/predict0.Rd | 24 man/predict0_vc.Rd | 155 ++- man/resf.Rd | 62 + man/resf_qr.Rd | 34 man/resf_vc.Rd | 209 ++--- man/weigen.Rd | 124 +- 38 files changed, 5484 insertions(+), 3217 deletions(-)
Title: Identification of Cell Types and Inference of Lineage Trees from
Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between RaceID versions 0.1.9 dated 2020-04-15 and 0.2.0 dated 2020-05-20
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/RaceID_utils.R | 2 +- R/VarID_functions.R | 9 +++++++-- inst/doc/RaceID.R | 8 ++++---- inst/doc/RaceID.Rmd | 27 ++++++++++++++++++--------- inst/doc/RaceID.html | 26 ++++++++++++++++---------- man/graphCluster.Rd | 4 +++- vignettes/RaceID.Rmd | 27 ++++++++++++++++++--------- 9 files changed, 79 insertions(+), 48 deletions(-)
Title: Asynchronous Disk-Based Representation of Massive Data
Description: Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Author: Martijn Schuemie [aut, cre],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between Andromeda versions 0.1.3 dated 2020-05-11 and 0.2.0 dated 2020-05-20
Andromeda-0.1.3/Andromeda/R/RcppExports.R |only Andromeda-0.1.3/Andromeda/R/Sorting.R |only Andromeda-0.1.3/Andromeda/man/isAndomeda.Rd |only Andromeda-0.1.3/Andromeda/man/isSorted.Rd |only Andromeda-0.1.3/Andromeda/src |only Andromeda-0.1.3/Andromeda/tests/testthat/test-isSorted.R |only Andromeda-0.2.0/Andromeda/DESCRIPTION | 16 +- Andromeda-0.2.0/Andromeda/MD5 | 45 +++---- Andromeda-0.2.0/Andromeda/NAMESPACE | 10 - Andromeda-0.2.0/Andromeda/NEWS.md | 24 ++++ Andromeda-0.2.0/Andromeda/R/Andromeda.R | 2 Andromeda-0.2.0/Andromeda/R/Object.R | 13 +- Andromeda-0.2.0/Andromeda/R/Operations.R | 80 ++++++++++++-- Andromeda-0.2.0/Andromeda/README.md | 6 - Andromeda-0.2.0/Andromeda/inst/doc/UsingAndromeda.R | 33 +++++ Andromeda-0.2.0/Andromeda/inst/doc/UsingAndromeda.Rmd | 65 ++++++++++- Andromeda-0.2.0/Andromeda/inst/doc/UsingAndromeda.pdf |binary Andromeda-0.2.0/Andromeda/man/Andromeda-package.Rd | 1 Andromeda-0.2.0/Andromeda/man/appendToTable.Rd | 4 Andromeda-0.2.0/Andromeda/man/isAndromeda.Rd |only Andromeda-0.2.0/Andromeda/man/restoreDate.Rd |only Andromeda-0.2.0/Andromeda/man/restorePosixct.Rd |only Andromeda-0.2.0/Andromeda/tests/testthat/test-appending.R | 42 +++++++ Andromeda-0.2.0/Andromeda/tests/testthat/test-dates.R |only Andromeda-0.2.0/Andromeda/tests/testthat/test-object.R | 19 +-- Andromeda-0.2.0/Andromeda/vignettes/UsingAndromeda.Rmd | 65 ++++++++++- 26 files changed, 348 insertions(+), 77 deletions(-)
Title: Tidy Messy Data
Description: Tools to help to create tidy data, where each column is a
variable, each row is an observation, and each cell contains a single value.
'tidyr' contains tools for changing the shape (pivoting) and hierarchy
(nesting and 'unnesting') of a dataset, turning deeply nested lists
into rectangular data frames ('rectangling'), and extracting values out
of string columns. It also includes tools for working with missing values
(both implicit and explicit).
Author: Hadley Wickham [aut, cre],
Lionel Henry [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 1.0.3 dated 2020-05-07 and 1.1.0 dated 2020-05-20
tidyr-1.0.3/tidyr/vignettes/preg.csv |only tidyr-1.0.3/tidyr/vignettes/preg2.csv |only tidyr-1.1.0/tidyr/DESCRIPTION | 10 tidyr-1.1.0/tidyr/MD5 | 169 - tidyr-1.1.0/tidyr/NAMESPACE | 4 tidyr-1.1.0/tidyr/NEWS.md | 128 + tidyr-1.1.0/tidyr/R/chop.R | 215 +- tidyr-1.1.0/tidyr/R/data.R | 14 tidyr-1.1.0/tidyr/R/doc-params.R |only tidyr-1.1.0/tidyr/R/drop-na.R | 11 tidyr-1.1.0/tidyr/R/expand.R | 187 - tidyr-1.1.0/tidyr/R/extract.R | 17 tidyr-1.1.0/tidyr/R/fill.R | 82 tidyr-1.1.0/tidyr/R/gather.R | 19 tidyr-1.1.0/tidyr/R/nest-legacy.R | 15 tidyr-1.1.0/tidyr/R/nest.R | 106 - tidyr-1.1.0/tidyr/R/pack.R | 78 tidyr-1.1.0/tidyr/R/pivot-long.R | 152 + tidyr-1.1.0/tidyr/R/pivot-wide.R | 203 + tidyr-1.1.0/tidyr/R/pivot.R | 4 tidyr-1.1.0/tidyr/R/rectangle.R | 198 + tidyr-1.1.0/tidyr/R/replace_na.R | 38 tidyr-1.1.0/tidyr/R/separate-rows.R | 19 tidyr-1.1.0/tidyr/R/separate.R | 34 tidyr-1.1.0/tidyr/R/tidyr.R | 1 tidyr-1.1.0/tidyr/R/unite.R | 18 tidyr-1.1.0/tidyr/R/utils.R | 23 tidyr-1.1.0/tidyr/README.md | 6 tidyr-1.1.0/tidyr/build/tidyr.pdf |binary tidyr-1.1.0/tidyr/build/vignette.rds |binary tidyr-1.1.0/tidyr/inst/doc/in-packages.R | 30 tidyr-1.1.0/tidyr/inst/doc/in-packages.Rmd | 137 - tidyr-1.1.0/tidyr/inst/doc/in-packages.html | 376 +-- tidyr-1.1.0/tidyr/inst/doc/nest.Rmd | 4 tidyr-1.1.0/tidyr/inst/doc/pivot.R | 76 tidyr-1.1.0/tidyr/inst/doc/pivot.Rmd | 78 tidyr-1.1.0/tidyr/inst/doc/pivot.html | 1363 ++++++------- tidyr-1.1.0/tidyr/inst/doc/programming.R |only tidyr-1.1.0/tidyr/inst/doc/programming.Rmd |only tidyr-1.1.0/tidyr/inst/doc/programming.html |only tidyr-1.1.0/tidyr/inst/doc/rectangle.Rmd | 8 tidyr-1.1.0/tidyr/inst/doc/rectangle.html | 435 +--- tidyr-1.1.0/tidyr/inst/doc/tidy-data.R | 77 tidyr-1.1.0/tidyr/inst/doc/tidy-data.Rmd | 123 - tidyr-1.1.0/tidyr/inst/doc/tidy-data.html | 636 ++---- tidyr-1.1.0/tidyr/man/chop.Rd | 23 tidyr-1.1.0/tidyr/man/complete.Rd | 33 tidyr-1.1.0/tidyr/man/deprecated-se.Rd | 33 tidyr-1.1.0/tidyr/man/drop_na.Rd | 38 tidyr-1.1.0/tidyr/man/expand.Rd | 161 - tidyr-1.1.0/tidyr/man/expand_grid.Rd | 18 tidyr-1.1.0/tidyr/man/fill.Rd | 77 tidyr-1.1.0/tidyr/man/gather.Rd | 19 tidyr-1.1.0/tidyr/man/hoist.Rd | 59 tidyr-1.1.0/tidyr/man/nest.Rd | 45 tidyr-1.1.0/tidyr/man/pack.Rd | 44 tidyr-1.1.0/tidyr/man/pivot_longer.Rd | 38 tidyr-1.1.0/tidyr/man/pivot_longer_spec.Rd | 70 tidyr-1.1.0/tidyr/man/pivot_wider.Rd | 77 tidyr-1.1.0/tidyr/man/pivot_wider_spec.Rd | 97 tidyr-1.1.0/tidyr/man/replace_na.Rd | 41 tidyr-1.1.0/tidyr/man/separate.Rd | 33 tidyr-1.1.0/tidyr/man/separate_rows.Rd | 39 tidyr-1.1.0/tidyr/man/table1.Rd | 13 tidyr-1.1.0/tidyr/man/tidyr_tidy_select.Rd |only tidyr-1.1.0/tidyr/man/unite.Rd | 34 tidyr-1.1.0/tidyr/man/who.Rd | 9 tidyr-1.1.0/tidyr/tests/testthat/test-chop.R | 64 tidyr-1.1.0/tidyr/tests/testthat/test-complete.R | 5 tidyr-1.1.0/tidyr/tests/testthat/test-drop-na.R | 9 tidyr-1.1.0/tidyr/tests/testthat/test-expand.R | 39 tidyr-1.1.0/tidyr/tests/testthat/test-extract.R | 10 tidyr-1.1.0/tidyr/tests/testthat/test-gather.R | 2 tidyr-1.1.0/tidyr/tests/testthat/test-nest-legacy.R | 15 tidyr-1.1.0/tidyr/tests/testthat/test-nest.R | 46 tidyr-1.1.0/tidyr/tests/testthat/test-pack-name-repair.txt |only tidyr-1.1.0/tidyr/tests/testthat/test-pack.R | 29 tidyr-1.1.0/tidyr/tests/testthat/test-pivot-long.R | 61 tidyr-1.1.0/tidyr/tests/testthat/test-pivot-wide.R | 77 tidyr-1.1.0/tidyr/tests/testthat/test-rectangle.R | 113 + tidyr-1.1.0/tidyr/tests/testthat/test-separate-rows.R | 12 tidyr-1.1.0/tidyr/tests/testthat/test-separate.R | 4 tidyr-1.1.0/tidyr/tests/testthat/test-unite.R | 23 tidyr-1.1.0/tidyr/vignettes/classroom.csv |only tidyr-1.1.0/tidyr/vignettes/classroom2.csv |only tidyr-1.1.0/tidyr/vignettes/in-packages.Rmd | 137 - tidyr-1.1.0/tidyr/vignettes/nest.Rmd | 4 tidyr-1.1.0/tidyr/vignettes/pivot.Rmd | 78 tidyr-1.1.0/tidyr/vignettes/programming.Rmd |only tidyr-1.1.0/tidyr/vignettes/rectangle.Rmd | 8 tidyr-1.1.0/tidyr/vignettes/tidy-data.Rmd | 123 - 91 files changed, 4176 insertions(+), 2778 deletions(-)
Title: Analysis via Simulation of Interrupted Time Series (ITS) Data
Description: Uses simulation to create prediction intervals for
post-policy outcomes in interrupted time series (ITS) designs,
following Miratrix (2020) <arXiv:2002.05746>. This package provides
methods for fitting ITS models with lagged outcomes and variables to
account for temporal dependencies. It then conducts inference via
simulation, simulating a set of plausible counterfactual post-policy
series to compare to the observed post-policy series. This package
also provides methods to visualize such data, and also to incorporate
seasonality models and smoothing and aggregation/summarization. This
work partially funded by Arnold Ventures in collaboration with
MDRC.
Author: Luke Miratrix [aut, cre],
Brit Henderson [ctb],
Chloe Anderson [ctb],
Arnold Ventures [fnd],
MDRC [fnd]
Maintainer: Luke Miratrix <lmiratrix@g.harvard.edu>
Diff between simITS versions 0.1.0 dated 2020-04-28 and 0.1.1 dated 2020-05-20
DESCRIPTION | 6 ++--- MD5 | 8 +++---- R/post_stratified_ITS.R | 2 - README.md | 26 +++++++++++++++++++++++-- inst/doc/simple_ITS_example.html | 40 +++++++++++++++++++-------------------- 5 files changed, 52 insertions(+), 30 deletions(-)
Title: Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Description: Provides a framework for the measurement and partitioning of
the (similarity-sensitive) biodiversity of a metacommunity and its
constituent subcommunities. Richard Reeve, et al. (2016)
<arXiv:1404.6520v3>.
Author: Sonia Mitchell [cre, aut] (<https://orcid.org/0000-0003-1536-2066>),
Richard Reeve [aut, ths] (<https://orcid.org/0000-0003-2589-8091>),
Tom White [ctb] (<https://orcid.org/0000-0002-9639-3800>)
Maintainer: Sonia Mitchell <sonia.mitchell@glasgow.ac.uk>
Diff between rdiversity versions 1.2.1 dated 2018-06-19 and 2.0 dated 2020-05-20
rdiversity-1.2.1/rdiversity/R/get_title.R |only rdiversity-1.2.1/rdiversity/R/plot_diversity.R |only rdiversity-1.2.1/rdiversity/R/qD.R |only rdiversity-1.2.1/rdiversity/R/qDZ.R |only rdiversity-1.2.1/rdiversity/R/qDZ_single.R |only rdiversity-1.2.1/rdiversity/R/qD_single.R |only rdiversity-1.2.1/rdiversity/R/similarity_shimatani.R |only rdiversity-1.2.1/rdiversity/man/get_title.Rd |only rdiversity-1.2.1/rdiversity/man/plot_diversity.Rd |only rdiversity-1.2.1/rdiversity/man/qD.Rd |only rdiversity-1.2.1/rdiversity/man/qDZ.Rd |only rdiversity-1.2.1/rdiversity/man/qDZ_single.Rd |only rdiversity-1.2.1/rdiversity/man/qD_single.Rd |only rdiversity-1.2.1/rdiversity/man/similarity_shimatani.Rd |only rdiversity-1.2.1/rdiversity/tests/testthat/test-qD.R |only rdiversity-1.2.1/rdiversity/tests/testthat/test-qDZ.R |only rdiversity-2.0/rdiversity/DESCRIPTION | 52 - rdiversity-2.0/rdiversity/MD5 | 227 +++-- rdiversity-2.0/rdiversity/NAMESPACE | 44 - rdiversity-2.0/rdiversity/NEWS.md | 14 rdiversity-2.0/rdiversity/R/chainsaw.R | 134 +-- rdiversity-2.0/rdiversity/R/check_partition.R | 33 rdiversity-2.0/rdiversity/R/check_phypartition.R | 50 - rdiversity-2.0/rdiversity/R/check_similarity.R | 43 - rdiversity-2.0/rdiversity/R/class-distance.R |only rdiversity-2.0/rdiversity/R/class-metacommunity.R | 70 + rdiversity-2.0/rdiversity/R/class-powermean.R | 69 - rdiversity-2.0/rdiversity/R/class-relativeentropy.R | 60 - rdiversity-2.0/rdiversity/R/class-similarity.R |only rdiversity-2.0/rdiversity/R/dist2sim.R |only rdiversity-2.0/rdiversity/R/distance.R |only rdiversity-2.0/rdiversity/R/diversity-components.R | 177 ++-- rdiversity-2.0/rdiversity/R/diversity-measures.R | 322 +++----- rdiversity-2.0/rdiversity/R/gen2dist.r |only rdiversity-2.0/rdiversity/R/geneid.R |only rdiversity-2.0/rdiversity/R/genevec.R |only rdiversity-2.0/rdiversity/R/hs_parameters.R | 78 +- rdiversity-2.0/rdiversity/R/inddiv.R | 75 - rdiversity-2.0/rdiversity/R/metacommunity.R | 327 ++++---- rdiversity-2.0/rdiversity/R/metadiv.R | 97 +- rdiversity-2.0/rdiversity/R/phy2branch.R |only rdiversity-2.0/rdiversity/R/phy2dist.R |only rdiversity-2.0/rdiversity/R/phy_abundance.R | 23 rdiversity-2.0/rdiversity/R/phy_struct.R | 47 - 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rdiversity-2.0/rdiversity/man/metacommunity-methods.Rd | 123 +-- rdiversity-2.0/rdiversity/man/metadiv.Rd | 37 rdiversity-2.0/rdiversity/man/norm_alpha.Rd | 16 rdiversity-2.0/rdiversity/man/norm_beta.Rd | 16 rdiversity-2.0/rdiversity/man/norm_meta_alpha.Rd | 23 rdiversity-2.0/rdiversity/man/norm_meta_beta.Rd | 23 rdiversity-2.0/rdiversity/man/norm_meta_rho.Rd | 21 rdiversity-2.0/rdiversity/man/norm_rho.Rd | 16 rdiversity-2.0/rdiversity/man/norm_sub_alpha.Rd | 23 rdiversity-2.0/rdiversity/man/norm_sub_beta.Rd | 23 rdiversity-2.0/rdiversity/man/norm_sub_rho.Rd | 21 rdiversity-2.0/rdiversity/man/phy2branch.Rd |only rdiversity-2.0/rdiversity/man/phy2dist.Rd |only rdiversity-2.0/rdiversity/man/phy_abundance.Rd | 23 rdiversity-2.0/rdiversity/man/phy_struct.Rd | 31 rdiversity-2.0/rdiversity/man/power_mean.Rd | 8 rdiversity-2.0/rdiversity/man/powermean-class.Rd | 60 - rdiversity-2.0/rdiversity/man/powermean.Rd | 71 + rdiversity-2.0/rdiversity/man/raw_alpha.Rd | 15 rdiversity-2.0/rdiversity/man/raw_beta.Rd | 17 rdiversity-2.0/rdiversity/man/raw_gamma.Rd | 18 rdiversity-2.0/rdiversity/man/raw_meta_alpha.Rd | 21 rdiversity-2.0/rdiversity/man/raw_meta_beta.Rd | 21 rdiversity-2.0/rdiversity/man/raw_meta_rho.Rd | 21 rdiversity-2.0/rdiversity/man/raw_rho.Rd | 17 rdiversity-2.0/rdiversity/man/raw_sub_alpha.Rd | 19 rdiversity-2.0/rdiversity/man/raw_sub_beta.Rd | 23 rdiversity-2.0/rdiversity/man/raw_sub_rho.Rd | 21 rdiversity-2.0/rdiversity/man/rdiversity-package.Rd | 10 rdiversity-2.0/rdiversity/man/relativeentropy-class.Rd | 49 - rdiversity-2.0/rdiversity/man/relativeentropy.Rd | 66 + rdiversity-2.0/rdiversity/man/repartition.Rd | 34 rdiversity-2.0/rdiversity/man/similarity-class.Rd |only rdiversity-2.0/rdiversity/man/similarity-methods.Rd |only rdiversity-2.0/rdiversity/man/smatrix.Rd | 15 rdiversity-2.0/rdiversity/man/sub_gamma.Rd | 23 rdiversity-2.0/rdiversity/man/subdiv.Rd | 36 rdiversity-2.0/rdiversity/man/summarise.Rd | 4 rdiversity-2.0/rdiversity/man/tax2dist.Rd |only rdiversity-2.0/rdiversity/man/taxfac.Rd |only rdiversity-2.0/rdiversity/man/taxid.Rd |only rdiversity-2.0/rdiversity/man/taxmask.Rd |only rdiversity-2.0/rdiversity/man/taxvec.Rd |only rdiversity-2.0/rdiversity/man/tbar.Rd | 14 rdiversity-2.0/rdiversity/man/zmatrix.Rd | 24 rdiversity-2.0/rdiversity/tests/testthat/test-README.R |only rdiversity-2.0/rdiversity/tests/testthat/test-chainsaw.R | 185 ++-- rdiversity-2.0/rdiversity/tests/testthat/test-check_partition.R | 26 rdiversity-2.0/rdiversity/tests/testthat/test-check_similarity.R | 10 rdiversity-2.0/rdiversity/tests/testthat/test-metacommunity.R |only rdiversity-2.0/rdiversity/tests/testthat/test-metadiv.R | 26 rdiversity-2.0/rdiversity/tests/testthat/test-phy_abundance.R | 22 rdiversity-2.0/rdiversity/tests/testthat/test-phy_struct.R | 18 rdiversity-2.0/rdiversity/tests/testthat/test-phylo.R | 50 - rdiversity-2.0/rdiversity/tests/testthat/test-power.mean.R | 26 rdiversity-2.0/rdiversity/tests/testthat/test-subdiv.R | 83 +- 135 files changed, 2435 insertions(+), 2115 deletions(-)
Title: A Sample Size Calculator for Micro-Randomized Trials
Description: Provide a sample size calculator for micro-randomized
trials (MRTs) based on methodology developed in Sample Size Calculations for
Micro-randomized Trials in mHealth by Liao et al. (2016) <DOI:10.1002/sim.6847>.
Author: Liying Huang [aut, cre],
Nicholas J. Seewald [aut],
Peng Liao [aut],
Ji Sun [aut]
Maintainer: Liying Huang <lxh37@psu.edu>
Diff between MRTSampleSize versions 0.1.0 dated 2017-07-25 and 0.2.0 dated 2020-05-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/CalculateSampleSize.R | 2 ++ man/calculatePower.Rd | 19 +++++++++++++++---- man/calculateSampleSize.Rd | 19 +++++++++++++++---- man/plotExpectAvail.Rd | 11 ++++++++--- man/plotProximalEffect.Rd | 11 ++++++++--- 7 files changed, 58 insertions(+), 24 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 42 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between distr6 versions 1.3.6 dated 2020-04-16 and 1.3.7 dated 2020-05-20
distr6-1.3.6/distr6/tests/testthat/test-KernelLogistic.R-e |only distr6-1.3.6/distr6/tests/testthat/test-KernelNormal.R-e |only distr6-1.3.6/distr6/tests/testthat/test-KernelQuartic.R-e |only distr6-1.3.6/distr6/tests/testthat/test-KernelTriangular.R-e |only distr6-1.3.6/distr6/tests/testthat/test-KernelTricube.R-e |only distr6-1.3.7/distr6/DESCRIPTION | 10 - distr6-1.3.7/distr6/MD5 | 73 ++++------ distr6-1.3.7/distr6/NEWS.md | 5 distr6-1.3.7/distr6/R/zzz.R | 2 distr6-1.3.7/distr6/README.md | 6 distr6-1.3.7/distr6/build/vignette.rds |binary distr6-1.3.7/distr6/inst/doc/distr6.html | 12 - distr6-1.3.7/distr6/tests/testthat/Rplots.pdf |binary distr6-1.3.7/distr6/tests/testthat/test-DistCauchy.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistChiSquared.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistChiSquaredNoncentral.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistErlang.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistExponential.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistFDistribution.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistFDistributionNoncentral.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistFrechet.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistGamma.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistGeometric.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistGompertz.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistGumbel.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistInverseGamma.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistLaplace.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistLogLogistic.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistLogarithmic.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistLogistic.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistLognormal.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistNegativeBinomial.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistNormal.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistPareto.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistPoisson.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistRayleigh.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistStudentT.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistStudentTNoncentral.R | 4 distr6-1.3.7/distr6/tests/testthat/test-DistWald.R | 2 distr6-1.3.7/distr6/tests/testthat/test-DistWeibull.R | 2 40 files changed, 90 insertions(+), 94 deletions(-)
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 3.0 dated 2019-05-03 and 4.0 dated 2020-05-20
DESCRIPTION | 10 +++--- MD5 | 43 +++++++++++++------------- R/MoE_P.R | 4 +- R/MoE_Y.R | 4 +- R/dom_optimal_allocation.R | 8 ++-- R/expsize.R | 4 +- R/expvar.R | 4 +- R/min_count.R | 5 +-- R/min_prop.R | 3 - R/optsize.R | 4 +- R/prop_dom_optimal_allocation.R | 8 ++-- R/round2.R | 2 - R/s2.R | 60 ++++++++++++++++++------------------- man/MoE_P.Rd | 5 +-- man/MoE_Y.Rd | 5 +-- man/dom_optimal_allocation.Rd | 23 ++++++++++---- man/expsize.Rd | 5 +-- man/expvar.Rd | 16 ++++++++- man/min_count.Rd | 8 +--- man/min_prop.Rd | 6 +-- man/optsize.Rd | 14 ++++++-- man/prop_dom_optimal_allocation.Rd | 22 +++++++++---- man/surveyplanning-package.Rd |only 23 files changed, 147 insertions(+), 116 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: Flux Estimation with Static Chamber Data
Description: Statistical analysis of static chamber concentration data for trace gas flux estimation.
Author: Asger R. Pedersen <asger@clin.au.dk>
Maintainer: Asger R. Pedersen <asger@clin.au.dk>
Diff between HMR versions 1.0.0 dated 2019-10-10 and 1.0.1 dated 2020-05-20
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- R/HMR.main.R | 35 ++++++++++++++++++----------------- man/HMR.Rd | 6 +++++- man/figures |only 5 files changed, 31 insertions(+), 24 deletions(-)
Title: User Interface for Collecting and Analysing Social Networks
Description: A 'Shiny' application for the interactive visualisation and
analysis of networks that also provides a web interface for collecting
social media data using 'vosonSML'.
Author: Bryan Gertzel, Robert Ackland
Maintainer: Bryan Gertzel <bryan.gertzel@anu.edu.au>
Diff between VOSONDash versions 0.5.1 dated 2019-11-23 and 0.5.4 dated 2020-05-20
DESCRIPTION | 15 - MD5 | 107 +++++---- NAMESPACE | 1 NEWS.md | 26 ++ R/VOSONDash-package.R | 15 - R/utils.R | 18 - R/vosonSML.R | 15 - README.md | 36 +-- inst/vosondash/global.R | 10 inst/vosondash/modules/collectionModule.R | 40 --- inst/vosondash/packages.R | 1 inst/vosondash/server.R | 8 inst/vosondash/server/apiKeysServer.R | 83 +++---- inst/vosondash/server/assortativityServer.R | 21 - inst/vosondash/server/controls.R | 54 ++-- inst/vosondash/server/igraphPlot.R | 67 ++++-- inst/vosondash/server/networkGraphsServer.R | 301 ++++++++++----------------- inst/vosondash/server/networkMetricsServer.R | 50 +--- inst/vosondash/server/redditServer.R | 129 +++-------- inst/vosondash/server/textAnalysisServer.R | 6 inst/vosondash/server/twitterServer.R | 267 ++++++++++------------- inst/vosondash/server/visnetworkPlot.R | 96 ++++++-- inst/vosondash/server/youtubeServer.R | 141 ++++-------- inst/vosondash/ui.R | 35 +-- inst/vosondash/ui/networkGraphsUI.R | 36 ++- inst/vosondash/ui/popovers.R | 10 inst/vosondash/ui/redditUI.R | 2 inst/vosondash/ui/twitterUI.R | 8 inst/vosondash/www/favicon |only man/VOSONDash-package.Rd | 34 +-- man/applyCategoricalFilters.Rd | 72 +++--- man/applyComponentFilter.Rd | 46 ++-- man/applyGraphFilters.Rd | 55 ++-- man/applyPruneFilter.Rd | 38 +-- man/collectTwitterData.Rd | 85 ++++--- man/collectYoutubeData.Rd | 49 ++-- man/createTwitterDevToken.Rd | 44 +-- man/createTwitterWebToken.Rd | 44 +-- man/emptyPlotMessage.Rd | 40 +-- man/getNetworkMetrics.Rd | 40 +-- man/getVertexCategories.Rd | 66 ++--- man/hasVosonTextData.Rd | 44 +-- man/loadDemoGraph.Rd | 56 ++--- man/logMessage.Rd | 50 ++-- man/mixmat.Rd | 68 +++--- man/runVOSONDash.Rd | 38 +-- man/systemTimeFilename.Rd | 44 +-- man/wordCloudPlot.Rd | 51 ++-- man/wordFreqChart.Rd | 46 ++-- man/wordSentChart.Rd | 48 ++-- man/wordSentValenceChart.Rd | 42 +-- 51 files changed, 1303 insertions(+), 1395 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between vardpoor versions 0.17.0 dated 2020-05-14 and 0.20.0 dated 2020-05-20
vardpoor-0.17.0/vardpoor/man/vardpoor-package.Rd |only vardpoor-0.20.0/vardpoor/DESCRIPTION | 26 vardpoor-0.20.0/vardpoor/MD5 | 117 +- vardpoor-0.20.0/vardpoor/NAMESPACE | 124 -- vardpoor-0.20.0/vardpoor/R/domain.R | 81 + vardpoor-0.20.0/vardpoor/R/incPercentile.R | 31 vardpoor-0.20.0/vardpoor/R/lin.ratio.R | 40 vardpoor-0.20.0/vardpoor/R/linarpr.R | 125 +-- vardpoor-0.20.0/vardpoor/R/linarpt.R | 304 ++----- vardpoor-0.20.0/vardpoor/R/linarr.R | 80 + vardpoor-0.20.0/vardpoor/R/lingini.R | 64 + vardpoor-0.20.0/vardpoor/R/lingini2.R | 67 + vardpoor-0.20.0/vardpoor/R/lingpg.R | 87 +- vardpoor-0.20.0/vardpoor/R/linpoormed.R | 71 + vardpoor-0.20.0/vardpoor/R/linqsr.R | 68 + vardpoor-0.20.0/vardpoor/R/linrmir.R | 72 + vardpoor-0.20.0/vardpoor/R/linrmpg.R | 81 + vardpoor-0.20.0/vardpoor/R/residual_est.R | 57 + vardpoor-0.20.0/vardpoor/R/var_srs.R | 34 vardpoor-0.20.0/vardpoor/R/vardannual.R | 259 ++++++ vardpoor-0.20.0/vardpoor/R/vardbootstr.R | 110 ++ vardpoor-0.20.0/vardpoor/R/vardchanges.R | 196 ++++ vardpoor-0.20.0/vardpoor/R/vardchangespoor.R | 133 +++ vardpoor-0.20.0/vardpoor/R/vardchangstrs.R | 118 ++ vardpoor-0.20.0/vardpoor/R/vardcros.R | 271 ++++++ vardpoor-0.20.0/vardpoor/R/vardcrospoor.R | 954 +++++++++++++---------- vardpoor-0.20.0/vardpoor/R/vardom.R | 122 ++ vardpoor-0.20.0/vardpoor/R/vardom_othstr.R | 104 ++ vardpoor-0.20.0/vardpoor/R/vardomh.R | 145 +++ vardpoor-0.20.0/vardpoor/R/variance_est.R | 101 ++ vardpoor-0.20.0/vardpoor/R/variance_othstr.R | 108 ++ vardpoor-0.20.0/vardpoor/R/varpoord.R | 170 +++- vardpoor-0.20.0/vardpoor/man/domain.Rd | 141 +-- vardpoor-0.20.0/vardpoor/man/incPercentile.Rd | 108 +- vardpoor-0.20.0/vardpoor/man/lin.ratio.Rd | 114 +- vardpoor-0.20.0/vardpoor/man/linarpr.Rd | 217 ++--- vardpoor-0.20.0/vardpoor/man/linarpt.Rd | 212 ++--- vardpoor-0.20.0/vardpoor/man/linarr.Rd | 208 ++--- vardpoor-0.20.0/vardpoor/man/lingini.Rd | 154 +-- vardpoor-0.20.0/vardpoor/man/lingini2.Rd | 160 +-- vardpoor-0.20.0/vardpoor/man/lingpg.Rd | 218 ++--- vardpoor-0.20.0/vardpoor/man/linpoormed.Rd | 179 ++-- vardpoor-0.20.0/vardpoor/man/linqsr.Rd | 162 +-- vardpoor-0.20.0/vardpoor/man/linrmir.Rd | 183 ++-- vardpoor-0.20.0/vardpoor/man/linrmpg.Rd | 186 ++-- vardpoor-0.20.0/vardpoor/man/residual_est.Rd | 132 +-- vardpoor-0.20.0/vardpoor/man/var_srs.Rd | 76 - vardpoor-0.20.0/vardpoor/man/vardannual.Rd | 628 +++++++-------- vardpoor-0.20.0/vardpoor/man/vardbootstr.Rd | 290 +++--- vardpoor-0.20.0/vardpoor/man/vardchanges.Rd | 511 ++++++------ vardpoor-0.20.0/vardpoor/man/vardchangespoor.Rd | 406 +++++---- vardpoor-0.20.0/vardpoor/man/vardchangstrs.Rd | 255 +++--- vardpoor-0.20.0/vardpoor/man/vardcros.Rd | 655 ++++++++------- vardpoor-0.20.0/vardpoor/man/vardcrospoor.Rd | 424 +++++----- vardpoor-0.20.0/vardpoor/man/vardom.Rd | 293 +++---- vardpoor-0.20.0/vardpoor/man/vardom_othstr.Rd | 291 +++---- vardpoor-0.20.0/vardpoor/man/vardomh.Rd | 402 ++++----- vardpoor-0.20.0/vardpoor/man/variance_est.Rd | 238 ++--- vardpoor-0.20.0/vardpoor/man/variance_othstr.Rd | 252 ++---- vardpoor-0.20.0/vardpoor/man/varpoord.Rd | 458 +++++------ 60 files changed, 7124 insertions(+), 4749 deletions(-)
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial
data; the classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb],
Michael Sumner [ctb],
Don MacQueen [ctb],
Jim Lemon [ctb],
Josh O'Brien [ctb],
Joseph O'Rourke [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sp versions 1.4-1 dated 2020-02-28 and 1.4-2 dated 2020-05-20
DESCRIPTION | 6 - MD5 | 62 ++++++++++---------- NAMESPACE | 4 - R/CRS-methods.R | 64 ++++++++++++++++++-- R/Class-CRS.R | 3 R/Class-Spatial.R | 2 R/Spatial-methods.R | 9 ++ R/SpatialGrid-methods.R | 6 - R/SpatialGridDataFrame-methods.R | 10 +-- R/SpatialLines-methods.R | 12 +-- R/SpatialPoints-methods.R | 2 R/SpatialPolygons-methods.R | 6 - R/gridlines.R | 4 - R/mapasp.R | 2 R/projected.R | 54 ++++++++++++----- R/rbind.R | 8 +- R/recenter.R | 4 - R/spsample.R | 8 +- build/vignette.rds |binary inst/doc/csdacm.pdf |binary inst/doc/intro_sp.pdf |binary inst/doc/over.pdf |binary inst/include/sp.h | 2 man/CRS-class.Rd | 27 +++++++- man/Spatial-class.Rd | 16 +++-- man/is.projected.Rd | 18 +++++ src/sp.h | 2 tests/fail1.Rout.save | 14 ++-- tests/pass1.Rout.save | 120 +++++++++++++++------------------------ tests/point.in.polygon.Rout.save | 10 ++- tests/spDists.Rout.save | 9 +- tests/spplot.Rout.save | 6 - 32 files changed, 300 insertions(+), 190 deletions(-)
Title: Single Cell Genomics for Enhancing Cell Composition Inference
from Bulk Genomics Data
Description: Cellular population mapping (CPM) a deconvolution algorithm in which single-cell genomics is required in only one or a few samples, where in other samples of the same tissue, only bulk genomics is measured and the underlying fine resolution cellular heterogeneity is inferred.
Author: Amit Frishberg [aut, cre], Naama Peshes-Yaloz [aut], Irit Gat-Viks [aut]
Maintainer: Amit Frishberg <amfrishberg@gmail.com>
Diff between scBio versions 0.1.5 dated 2019-05-21 and 0.1.6 dated 2020-05-20
DESCRIPTION | 8 +- MD5 | 17 +++--- NAMESPACE | 2 R/scBio.R | 14 +++-- inst |only man/BulkFlu.Rd | 26 ++++----- man/CPM.Rd | 146 ++++++++++++++++++++++++++++------------------------- man/SCCellSpace.Rd | 26 ++++----- man/SCFlu.Rd | 26 ++++----- man/SCLabels.Rd | 26 ++++----- 10 files changed, 155 insertions(+), 136 deletions(-)
Title: Optimal Project Prioritization
Description: A decision support tool for prioritizing conservation projects.
Prioritizations can be developed by maximizing expected feature richness,
expected phylogenetic diversity, the number of features that meet
persistence targets, or identifying a set of projects that meet persistence
targets for minimal cost. Constraints (e.g. lock in specific actions) and
feature weights can also be specified to further customize prioritizations.
After defining a project prioritization problem, solutions can be obtained
using exact algorithms, heuristic algorithms, or random processes. In
particular, it is recommended to install the 'Gurobi' optimizer (available
from <https://www.gurobi.com>) because it can identify optimal solutions
very quickly. Finally, methods are provided for comparing different
prioritizations and evaluating their benefits. For more information, see
Hanson et al. (2019) <doi:10.1111/2041-210X.13264>.
Author: Jeffrey O Hanson [aut, cre] (<https://orcid.org/0000-0002-4716-6134>),
Richard Schuster [aut] (<https://orcid.org/0000-0003-3191-7869>),
Matthew Strimas-Mackey [aut] (<https://orcid.org/0000-0001-8929-7776>),
Joseph R Bennett [aut] (<https://orcid.org/0000-0002-3901-9513>)
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between oppr versions 1.0.1 dated 2020-03-11 and 1.0.2 dated 2020-05-20
DESCRIPTION | 37 + MD5 | 84 ++-- NAMESPACE | 6 NEWS.md | 8 R/add_gurobi_solver.R | 1 R/add_heuristic_solver.R | 1 R/add_lpsolveapi_solver.R | 1 R/add_lpsymphony_solver.R | 1 R/add_manual_locked_constraints.R | 2 R/add_manual_targets.R | 4 R/add_random_solver.R | 1 R/add_rsymphony_solver.R | 1 R/compile.R | 2 R/package.R | 3 R/solve.R | 6 README.md | 60 +-- build/vignette.rds |binary inst/doc/oppr.html | 689 ++++++++++++++++------------------- man/Solver-class.Rd | 11 man/add_absolute_targets.Rd | 2 man/add_feature_weights.Rd | 2 man/add_gurobi_solver.Rd | 14 man/add_heuristic_solver.Rd | 8 man/add_lsymphony_solver.Rd | 9 man/add_manual_targets.Rd | 2 man/add_max_targets_met_objective.Rd | 2 man/add_min_set_objective.Rd | 2 man/add_relative_targets.Rd | 2 man/add_rsymphony_solver.Rd | 9 man/array_parameters.Rd | 16 man/figures/README-readme-plot-1.png |binary man/matrix_parameters.Rd | 9 man/objectives.Rd | 4 man/oppr.Rd | 10 man/plot.ProjectProblem.Rd | 3 man/plot_feature_persistence.Rd | 9 man/plot_phylo_persistence.Rd | 15 man/problem.Rd | 14 man/scalar_parameters.Rd | 15 man/sim_data.Rd | 14 man/simulate_ppp_data.Rd | 14 man/simulate_ptm_data.Rd | 15 man/solve.Rd | 5 43 files changed, 585 insertions(+), 528 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.5.9 dated 2020-03-29 and 0.6.0 dated 2020-05-20
DESCRIPTION | 12 MD5 | 54 NAMESPACE | 15 NEWS | 22 R/alm.R | 10 R/dummies.R |only R/error-measures.R | 42 R/graphmaker.R | 152 ++ R/lmCombine.R | 4 R/lmDynamic.R | 2 R/methods.R | 2510 +++++++++++++++++++++++-------------------- R/stepwise.R | 2 R/xregExpander.R | 7 R/xregMultiplier.R | 6 R/xregTransformer.R | 7 README.md | 25 build/partial.rdb |binary inst/doc/alm.html | 142 +- inst/doc/greybox.Rmd | 1 inst/doc/greybox.html | 21 inst/doc/maUsingGreybox.html | 12 inst/doc/ro.html | 28 man/actuals.Rd | 13 man/plot.greybox.Rd | 41 man/temporaldummy.Rd |only man/xregExpander.Rd | 6 man/xregMultiplier.Rd | 5 man/xregTransformer.Rd | 5 vignettes/greybox.Rmd | 1 29 files changed, 1788 insertions(+), 1357 deletions(-)
Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Assessment. Items created with the 'IMak' package should not be used in applied settings as part of the working protocol without ensuring first that the items meet the required psychometric quality standards (see Blum & Holling, 2018) <DOI:10.3389/fpsyg.2018.01286>.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Diff between IMak versions 2.0.0 dated 2020-05-06 and 2.0.1 dated 2020-05-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/afs.R | 2 +- R/plotfa.R | 2 +- man/afs.Rd | 2 +- man/plot_fa.Rd | 2 +- 6 files changed, 12 insertions(+), 12 deletions(-)
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.13 dated 2020-04-13 and 0.14 dated 2020-05-20
DESCRIPTION | 10 +-- MD5 | 30 +++++------ NEWS.md | 6 ++ R/cache.R | 142 ++++++++++++++++++++++++++++++++++++++++++++++------- R/command.R | 2 R/io.R | 5 + R/markdown.R | 3 - R/revcheck.R | 12 ++++ README.md | 2 build/vignette.rds |binary inst/doc/xfun.Rmd | 50 +++++++++++++++++- inst/doc/xfun.html | 49 ++++++++++++++---- man/cache_rds.Rd | 108 +++++++++++++++++++++++++++++++++------- man/embed_file.Rd | 3 - man/upload_ftp.Rd | 2 vignettes/xfun.Rmd | 50 +++++++++++++++++- 16 files changed, 400 insertions(+), 74 deletions(-)
Title: Toolkit Implementation of gWidgets for RGtk2
Description: Port of the gWidgets API to the RGtk2 toolkit.
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgetsRGtk2 versions 0.0-86 dated 2018-03-01 and 0.0-86.1 dated 2020-05-20
gWidgetsRGtk2-0.0-86.1/gWidgetsRGtk2/DESCRIPTION | 7 +++---- gWidgetsRGtk2-0.0-86.1/gWidgetsRGtk2/MD5 | 6 ++---- gWidgetsRGtk2-0.0-86.1/gWidgetsRGtk2/NAMESPACE | 2 +- gWidgetsRGtk2-0.0-86/gWidgetsRGtk2/R/gdfedit.R |only gWidgetsRGtk2-0.0-86/gWidgetsRGtk2/man/gdfedit.Rd |only 5 files changed, 6 insertions(+), 9 deletions(-)
Title: Least Absolute Deviation Regression Trees
Description: Recursive partitioning for least absolute deviation regression trees. Another algorithm from the 1984 book by
Breiman, Friedman, Olshen and Stone in addition to the 'rpart' package (Breiman, Friedman, Olshen, Stone (1984, ISBN:9780412048418).
Author: Stephan Dlugosz [aut,cre]
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Diff between rpart.LAD versions 0.1.1 dated 2020-03-23 and 0.1.2 dated 2020-05-20
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- README.md |only man/LAD.Rd | 4 +++- src/LADsplit.cpp | 6 +++--- tests/test.R | 4 ++++ 6 files changed, 20 insertions(+), 13 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Collection of high-level, robust, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
The three workhorse functions are Cache, prepInputs, and Require;
these allow for nested caching, robust to environments, and objects with
environments (like functions), and data retrieval and processing, and
package handling in continuous workflow environments. In all cases,
efforts are made to make the first and subsequent calls of functions have
the same result, but vastly faster at subsequent times by way of checksums
and digesting. Several features are still under active development, including
cloud storage of cached objects, allowing for sharing between users.
Author: Eliot J B McIntire [aut, cre] (<https://orcid.org/0000-0002-6914-8316>),
Alex M Chubaty [aut] (<https://orcid.org/0000-0001-7146-8135>),
Tati Micheletti [ctb] (<https://orcid.org/0000-0003-4838-8342>),
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Ian Eddy [ctb] (<https://orcid.org/0000-0001-7397-2116>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 1.1.0 dated 2020-05-15 and 1.1.1 dated 2020-05-20
DESCRIPTION | 8 MD5 | 26 NEWS.md | 12 R/options.R | 247 +++--- R/packages.R | 17 R/postProcess.R | 15 build/reproducible.pdf |binary inst/WORDLIST | 7 inst/doc/Cache-using-postgresql.html | 2 inst/doc/Intro-to-Cache.html | 1250 +++++++++++++++++------------------ man/determineFilename.Rd | 15 man/postProcess.Rd | 15 man/reproducibleOptions.Rd | 247 +++--- tests/testthat/test-misc.R | 17 14 files changed, 965 insertions(+), 913 deletions(-)
Title: An Implementation of Crime Analysis Methods
Description: An implementation of functions for the analysis of crime incident or records
management system data. The package implements analysis algorithms scaled for city
or regional crime analysis units. The package provides functions for kernel density
estimation for crime heat maps, geocoding using the 'Google Maps' API, identification
of repeat crime incidents, spatio-temporal map comparison across time intervals,
time series analysis (forecasting and decomposition), detection of optimal parameters
for the identification of near repeat incidents, and near repeat analysis with crime
network linkage.
Author: Jamie Spaulding and Keith Morris
Maintainer: Jamie Spaulding <jspauldi@mix.wvu.edu>
Diff between rcrimeanalysis versions 0.4.1 dated 2020-03-03 and 0.4.2 dated 2020-05-20
rcrimeanalysis-0.4.1/rcrimeanalysis/data/datalist |only rcrimeanalysis-0.4.2/rcrimeanalysis/DESCRIPTION | 10 rcrimeanalysis-0.4.2/rcrimeanalysis/MD5 | 54 - rcrimeanalysis-0.4.2/rcrimeanalysis/NAMESPACE | 106 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/NEWS.md |only rcrimeanalysis-0.4.2/rcrimeanalysis/R/crimes.R | 70 +- rcrimeanalysis-0.4.2/rcrimeanalysis/R/geocode_address.R | 64 +- rcrimeanalysis-0.4.2/rcrimeanalysis/R/id_repeat.R | 62 - rcrimeanalysis-0.4.2/rcrimeanalysis/R/kde_int_comp.R | 274 ++++---- rcrimeanalysis-0.4.2/rcrimeanalysis/R/kde_map.R | 140 ++-- rcrimeanalysis-0.4.2/rcrimeanalysis/R/near_repeat_analysis.R | 194 +++--- rcrimeanalysis-0.4.2/rcrimeanalysis/R/near_repeat_eval.R | 316 +++++----- rcrimeanalysis-0.4.2/rcrimeanalysis/R/ts_daily_decomp.R | 114 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/R/ts_forecast.R | 122 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/R/ts_month_decomp.R | 104 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/build |only rcrimeanalysis-0.4.2/rcrimeanalysis/inst/CITATION | 20 rcrimeanalysis-0.4.2/rcrimeanalysis/inst/doc |only rcrimeanalysis-0.4.2/rcrimeanalysis/man/crimes.Rd | 6 rcrimeanalysis-0.4.2/rcrimeanalysis/man/geocode_address.Rd | 78 +- rcrimeanalysis-0.4.2/rcrimeanalysis/man/id_repeat.Rd | 64 +- rcrimeanalysis-0.4.2/rcrimeanalysis/man/kde_int_comp.Rd | 90 +- rcrimeanalysis-0.4.2/rcrimeanalysis/man/kde_map.Rd | 80 +- rcrimeanalysis-0.4.2/rcrimeanalysis/man/near_repeat_analysis.Rd | 111 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/man/near_repeat_eval.Rd | 110 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/man/ts_daily_decomp.Rd | 98 +-- rcrimeanalysis-0.4.2/rcrimeanalysis/man/ts_forecast.Rd | 80 +- rcrimeanalysis-0.4.2/rcrimeanalysis/man/ts_month_decomp.Rd | 94 +- rcrimeanalysis-0.4.2/rcrimeanalysis/vignettes |only 29 files changed, 1238 insertions(+), 1223 deletions(-)
More information about rcrimeanalysis at CRAN
Permanent link
Title: Magnetic Resonance Binning, Integration and Normalization
Description: Nuclear Magnetic Resonance is widely used in Life Science
research. The package (<http://www.kleinomicslab.com/software>) converts 1D or 2D data into a matrix of values
suitable for further data analysis and performs basic processing steps in a
reproducible way. Negative values, a common issue in such data, are replaced
by positive values. All used parameters are stored in a readable text file
and can be restored from that file to enable exact reproduction of the data
at a later time.
Author: Matthias Klein [aut, cre] (<https://orcid.org/0000-0001-7455-5381>)
Maintainer: Matthias Klein <klein.663@osu.edu>
Diff between mrbin versions 1.4.0 dated 2020-04-29 and 1.4.1 dated 2020-05-20
mrbin-1.4.0/mrbin/man/plotBins.Rd |only mrbin-1.4.1/mrbin/DESCRIPTION | 10 mrbin-1.4.1/mrbin/MD5 | 21 mrbin-1.4.1/mrbin/NAMESPACE | 1 mrbin-1.4.1/mrbin/NEWS.md | 9 mrbin-1.4.1/mrbin/R/mrbin.R | 729 ++++++++++++++++++++++------------ mrbin-1.4.1/mrbin/inst/doc/mrbin.R | 37 + mrbin-1.4.1/mrbin/inst/doc/mrbin.Rnw | 50 ++ mrbin-1.4.1/mrbin/inst/doc/mrbin.pdf |binary mrbin-1.4.1/mrbin/man/PQNScaling.Rd | 6 mrbin-1.4.1/mrbin/man/readBruker.Rd | 4 mrbin-1.4.1/mrbin/vignettes/mrbin.Rnw | 50 ++ 12 files changed, 630 insertions(+), 287 deletions(-)
Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions.
Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between csv versions 0.5.8 dated 2020-05-19 and 0.5.9 dated 2020-05-20
DESCRIPTION | 10 +++--- MD5 | 6 ++-- NAMESPACE | 2 - R/csv.R | 86 ++++++++++++++++++++++++++++++------------------------------ 4 files changed, 52 insertions(+), 52 deletions(-)
Title: Climate Variability Indices for Ecological Modelling
Description: Supports analysis of trends in climate change, ecological and crop modelling.
Author: Kaue de Sousa [aut, cre] (<https://orcid.org/0000-0002-7571-7845>),
Jacob van Etten [aut, ths] (<https://orcid.org/0000-0001-7554-2558>),
Svein Solberg [aut, ths] (<https://orcid.org/0000-0002-4491-4483>)
Maintainer: Kaue de Sousa <kaue.desousa@inn.no>
Diff between climatrends versions 0.1.0 dated 2020-02-28 and 0.1.6 dated 2020-05-20
climatrends-0.1.0/climatrends/R/modis.R |only climatrends-0.1.0/climatrends/data/chirp.rda |only climatrends-0.1.0/climatrends/data/modis.rda |only climatrends-0.1.0/climatrends/man/modis.Rd |only climatrends-0.1.0/climatrends/vignettes/Overview.Rmd.orig |only climatrends-0.1.0/climatrends/vignettes/logo.png |only climatrends-0.1.0/climatrends/vignettes/precompile.R |only climatrends-0.1.6/climatrends/DESCRIPTION | 22 climatrends-0.1.6/climatrends/LICENSE | 2 climatrends-0.1.6/climatrends/MD5 | 64 - climatrends-0.1.6/climatrends/NAMESPACE | 43 climatrends-0.1.6/climatrends/NEWS.md | 24 climatrends-0.1.6/climatrends/R/ETo.R | 319 +++++- climatrends-0.1.6/climatrends/R/GDD.R | 506 ++++++++-- climatrends-0.1.6/climatrends/R/clima_data.R |only climatrends-0.1.6/climatrends/R/climatrends.R | 4 climatrends-0.1.6/climatrends/R/crop_sensitive.R |only climatrends-0.1.6/climatrends/R/get_timeseries.R | 591 +++++++++-- climatrends-0.1.6/climatrends/R/internal_functions.R | 123 ++ climatrends-0.1.6/climatrends/R/late_frost.R |only climatrends-0.1.6/climatrends/R/print.R |only climatrends-0.1.6/climatrends/R/rainfall.R | 568 +++++++---- climatrends-0.1.6/climatrends/R/sysdata.rda |binary climatrends-0.1.6/climatrends/R/temperature.R | 700 ++++++++++---- climatrends-0.1.6/climatrends/build/vignette.rds |binary climatrends-0.1.6/climatrends/data/innlandet.rda |only climatrends-0.1.6/climatrends/data/lonlatsf.rda |only climatrends-0.1.6/climatrends/data/rain_dat.rda |only climatrends-0.1.6/climatrends/data/temp_dat.rda |only climatrends-0.1.6/climatrends/inst/doc/Overview.Rmd | 256 +---- climatrends-0.1.6/climatrends/inst/doc/Overview.html | 419 +++----- climatrends-0.1.6/climatrends/inst/vector |only climatrends-0.1.6/climatrends/man/ETo.Rd | 145 +- climatrends-0.1.6/climatrends/man/GDD.Rd | 181 ++- climatrends-0.1.6/climatrends/man/clima_data.Rd |only climatrends-0.1.6/climatrends/man/climatrends.Rd | 7 climatrends-0.1.6/climatrends/man/crop_sensitive.Rd |only climatrends-0.1.6/climatrends/man/get_timeseries.Rd |only climatrends-0.1.6/climatrends/man/late_frost.Rd |only climatrends-0.1.6/climatrends/man/rainfall.Rd | 174 ++- climatrends-0.1.6/climatrends/man/temperature.Rd | 178 ++- climatrends-0.1.6/climatrends/vignettes/Overview.Rmd | 256 +---- climatrends-0.1.6/climatrends/vignettes/climatrends.bib | 71 + 43 files changed, 3128 insertions(+), 1525 deletions(-)
Title: Provides Easy Access to Complex Systems Datasets
Description: Provides easy-to-use and easy-to-access datasets from the
Index of COmplex Networks (ICON) database available on the University
of Colorado website. All datasets can be loaded with a single function
call and new datasets are being slowly added from ICON at
<https://icon.colorado.edu>. Specific ICON datasets of interest can
be requested at the BugReports URL <https://github.com/rrrlw/ICON/issues>.
Author: Raoul Wadhwa [aut, cre],
Jacob Scott [aut]
Maintainer: Raoul Wadhwa <raoulwadhwa@gmail.com>
Diff between ICON versions 0.1.0 dated 2019-12-06 and 0.2.0 dated 2020-05-20
ICON-0.1.0/ICON/data/chess.rda |only ICON-0.1.0/ICON/data/seed_disperse.rda |only ICON-0.1.0/ICON/data/yeast_ppi.rda |only ICON-0.1.0/ICON/man/chess.Rd |only ICON-0.1.0/ICON/man/seed_disperse.Rd |only ICON-0.1.0/ICON/man/yeast_ppi.Rd |only ICON-0.2.0/ICON/DESCRIPTION | 9 +- ICON-0.2.0/ICON/MD5 | 21 +++--- ICON-0.2.0/ICON/NAMESPACE | 6 + ICON-0.2.0/ICON/R/ICON.R | 20 +++--- ICON-0.2.0/ICON/R/acquire.R |only ICON-0.2.0/ICON/R/data.R | 103 ++++++++------------------------- ICON-0.2.0/ICON/R/globals.R |only ICON-0.2.0/ICON/data/ICON_data.rda |only ICON-0.2.0/ICON/man/ICON.Rd | 24 +++---- ICON-0.2.0/ICON/man/ICON_data.Rd |only ICON-0.2.0/ICON/man/get_data.Rd |only 17 files changed, 68 insertions(+), 115 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-10 0.2.2
2020-05-04 0.2.1
2020-04-14 0.2.0
2020-03-05 0.1.0
2019-09-07 0.0.2
2018-12-17 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-18 0.5.4.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-13 1.2.5
2020-03-19 1.2.4
2020-01-21 1.2.3
2019-11-29 1.2.2
2019-11-17 1.1.2
2019-11-07 1.1.1
2019-11-05 1.1.0
2019-08-19 1.0.3
2019-08-06 1.0.2
2019-07-25 1.0.1
2019-07-23 1.0.0