Thu, 21 May 2020

Package openSTARS updated to version 1.2.0 with previous version 1.1.0 dated 2018-05-11

Title: An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
Description: An open source implementation of the 'STARS' toolbox (Peterson & Ver Hoef, 2014, <doi:10.18637/jss.v056.i02>) using 'R' and 'GRASS GIS'. It prepares the *.ssn object needed for the 'SSN' package. A Digital Elevation Model (DEM) is used to derive stream networks (in contrast to 'STARS' that can clean an existing stream network).
Author: Mira Kattwinkel [aut, cre], Eduard Szöcs [aut]
Maintainer: Mira Kattwinkel <mira.kattwinkel@gmx.net>

Diff between openSTARS versions 1.1.0 dated 2018-05-11 and 1.2.0 dated 2020-05-21

 openSTARS-1.1.0/openSTARS/R/check_compl_junctions.R                 |only
 openSTARS-1.1.0/openSTARS/R/correct_compl_junctions.R               |only
 openSTARS-1.1.0/openSTARS/inst/extdata/nc/landuse.dbf               |only
 openSTARS-1.1.0/openSTARS/inst/extdata/nc/landuse.prj               |only
 openSTARS-1.1.0/openSTARS/inst/extdata/nc/landuse.qpj               |only
 openSTARS-1.1.0/openSTARS/inst/extdata/nc/landuse.shp               |only
 openSTARS-1.1.0/openSTARS/inst/extdata/nc/landuse.shx               |only
 openSTARS-1.1.0/openSTARS/man/check_compl_junctions.Rd              |only
 openSTARS-1.1.0/openSTARS/man/correct_compl_junctions.Rd            |only
 openSTARS-1.1.0/openSTARS/man/openSTARS_data.Rd                     |only
 openSTARS-1.2.0/openSTARS/DESCRIPTION                               |   10 
 openSTARS-1.2.0/openSTARS/LICENSE                                   |    2 
 openSTARS-1.2.0/openSTARS/MD5                                       |  137 
 openSTARS-1.2.0/openSTARS/NAMESPACE                                 |   52 
 openSTARS-1.2.0/openSTARS/R/calc_attributes_edges.R                 | 1419 +++++-----
 openSTARS-1.2.0/openSTARS/R/calc_attributes_sites_approx.R          |  464 +--
 openSTARS-1.2.0/openSTARS/R/calc_attributes_sites_exact.R           | 1170 ++++----
 openSTARS-1.2.0/openSTARS/R/calc_binary.R                           |  281 -
 openSTARS-1.2.0/openSTARS/R/calc_edges.R                            |  613 ++--
 openSTARS-1.2.0/openSTARS/R/calc_prediction_sites.R                 |  621 ++--
 openSTARS-1.2.0/openSTARS/R/calc_sites.R                            |  673 ++--
 openSTARS-1.2.0/openSTARS/R/check_compl_confluences.R               |only
 openSTARS-1.2.0/openSTARS/R/check_ssn.R                             |  528 +--
 openSTARS-1.2.0/openSTARS/R/correct_compl_confluences.R             |only
 openSTARS-1.2.0/openSTARS/R/delete_lakes.R                          |only
 openSTARS-1.2.0/openSTARS/R/derive_streams.R                        |  573 ++--
 openSTARS-1.2.0/openSTARS/R/export_ssn.R                            |  492 +--
 openSTARS-1.2.0/openSTARS/R/globals.R                               |only
 openSTARS-1.2.0/openSTARS/R/import_data.R                           |  673 ++--
 openSTARS-1.2.0/openSTARS/R/merge_sites_measurements.R              |only
 openSTARS-1.2.0/openSTARS/R/openSTARS.R                             |  251 -
 openSTARS-1.2.0/openSTARS/R/restrict_network.R                      |only
 openSTARS-1.2.0/openSTARS/R/setup_grass_environment.R               |  185 -
 openSTARS-1.2.0/openSTARS/build/vignette.rds                        |binary
 openSTARS-1.2.0/openSTARS/inst/doc/Warnings_and_Errors.R            |   51 
 openSTARS-1.2.0/openSTARS/inst/doc/Warnings_and_Errors.Rmd          |  503 +--
 openSTARS-1.2.0/openSTARS/inst/doc/Warnings_and_Errors.html         |  479 +--
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/elev_ned_30m.tif.aux.xml  |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/geology.dbf               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/geology.prj               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/geology.shp               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/geology.shx               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.cpg                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.dbf                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.prj                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.qpj                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.shp                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/lakes.shx                 |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/landuse_r.tif             |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/obs_data.csv              |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/pointsources.qpj          |    2 
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/sites_nc.dbf              |binary
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/streams.dbf               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/streams.prj               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/streams.shp               |only
 openSTARS-1.2.0/openSTARS/inst/extdata/nc/streams.shx               |only
 openSTARS-1.2.0/openSTARS/man/assign_binIDs.Rd                      |   60 
 openSTARS-1.2.0/openSTARS/man/calcCatchmArea_assignNetID.Rd         |   70 
 openSTARS-1.2.0/openSTARS/man/calc_attributes_edges.Rd              |  326 +-
 openSTARS-1.2.0/openSTARS/man/calc_attributes_sites_approx.Rd       |  276 -
 openSTARS-1.2.0/openSTARS/man/calc_attributes_sites_exact.Rd        |  281 +
 openSTARS-1.2.0/openSTARS/man/calc_binary.Rd                        |  160 -
 openSTARS-1.2.0/openSTARS/man/calc_catchment_attributes_rast.Rd     |   58 
 openSTARS-1.2.0/openSTARS/man/calc_catchment_attributes_rast_rec.Rd |   68 
 openSTARS-1.2.0/openSTARS/man/calc_catchment_attributes_vect.Rd     |   58 
 openSTARS-1.2.0/openSTARS/man/calc_catchment_attributes_vect_rec.Rd |   62 
 openSTARS-1.2.0/openSTARS/man/calc_edges.Rd                         |  143 -
 openSTARS-1.2.0/openSTARS/man/calc_offset.Rd                        |   82 
 openSTARS-1.2.0/openSTARS/man/calc_outdist.Rd                       |only
 openSTARS-1.2.0/openSTARS/man/calc_prediction_sites.Rd              |  184 -
 openSTARS-1.2.0/openSTARS/man/calc_sites.Rd                         |  241 -
 openSTARS-1.2.0/openSTARS/man/check_compl_confluences.Rd            |only
 openSTARS-1.2.0/openSTARS/man/check_projection.Rd                   |only
 openSTARS-1.2.0/openSTARS/man/check_ssn.Rd                          |  164 -
 openSTARS-1.2.0/openSTARS/man/correct_compl_confluences.Rd          |only
 openSTARS-1.2.0/openSTARS/man/delete_lakes.Rd                       |only
 openSTARS-1.2.0/openSTARS/man/derive_streams.Rd                     |  213 -
 openSTARS-1.2.0/openSTARS/man/export_ssn.Rd                         |  153 -
 openSTARS-1.2.0/openSTARS/man/get_all_raster_values.Rd              |only
 openSTARS-1.2.0/openSTARS/man/get_cats_edges_in_catchment.Rd        |   50 
 openSTARS-1.2.0/openSTARS/man/get_n_val_raster.Rd                   |only
 openSTARS-1.2.0/openSTARS/man/get_streams_edges_in_catchment.Rd     |only
 openSTARS-1.2.0/openSTARS/man/import_data.Rd                        |  285 +-
 openSTARS-1.2.0/openSTARS/man/import_vector_data.Rd                 |   75 
 openSTARS-1.2.0/openSTARS/man/merge_sites_measurements.Rd           |only
 openSTARS-1.2.0/openSTARS/man/openSTARS.Rd                          |  245 +
 openSTARS-1.2.0/openSTARS/man/prepare_sites.Rd                      |   54 
 openSTARS-1.2.0/openSTARS/man/restrict_network.Rd                   |only
 openSTARS-1.2.0/openSTARS/man/setup_grass_environment.Rd            |   97 
 openSTARS-1.2.0/openSTARS/man/watershed_memory.Rd                   |   38 
 openSTARS-1.2.0/openSTARS/vignettes/Warnings_and_Errors.Rmd         |  503 +--
 91 files changed, 6966 insertions(+), 6159 deletions(-)

More information about openSTARS at CRAN
Permanent link

Package ebreg updated to version 0.1.1 with previous version 0.1.0 dated 2019-10-29

Title: Implementation of the Empirical Bayes Method
Description: Implements a Bayesian-like approach to the high-dimensional sparse linear regression problem based on an empirical or data-dependent prior distribution, which can be used for estimation/inference on the model parameters, variable selection, and prediction of a future response. The method was first presented in Martin, Ryan and Mess, Raymond and Walker, Stephen G (2017) <doi:10.3150/15-BEJ797>. More details focused on the prediction problem are given in Martin, Ryan and Tang, Yiqi (2019) <arXiv:1903.00961>.
Author: Yiqi Tang, Ryan Martin
Maintainer: Yiqi Tang <ytang22@ncsu.edu>

Diff between ebreg versions 0.1.0 dated 2019-10-29 and 0.1.1 dated 2020-05-21

 DESCRIPTION                     |    6 +++---
 MD5                             |   13 +++++++------
 R/ebproject.R                   |   30 ++++++++++++++++++++----------
 README.md                       |    4 +++-
 build/partial.rdb               |binary
 man/ebreg.Rd                    |   10 +++++++---
 man/figures                     |only
 tests/testthat/test_ebproject.R |   28 ++++++++++++++--------------
 8 files changed, 54 insertions(+), 37 deletions(-)

More information about ebreg at CRAN
Permanent link

Package naijR updated to version 0.1.0 with previous version 0.0.7 dated 2020-03-11

Title: Operations to Ease Data Analyses Specific to Nigeria
Description: A set of convenience functions as well as geographical/political data about Nigeria, aimed at simplifying work with data and information that are specific to the country.
Author: Victor Ordu [aut, cre] (<https://orcid.org/0000-0003-3716-0668>)
Maintainer: Victor Ordu <victorordu@outlook.com>

Diff between naijR versions 0.0.7 dated 2020-03-11 and 0.1.0 dated 2020-05-21

 DESCRIPTION                        |   17 -
 MD5                                |   45 +-
 NAMESPACE                          |   29 +
 R/lgas_nigeria.R                   |   28 -
 R/map_nigeria.R                    |  590 +++++++++++++++++++++++++++++++++++--
 R/political.R                      |  115 +++++--
 R/zzz.R                            |only
 README.md                          |   62 ++-
 build                              |only
 inst/doc                           |only
 inst/extdata                       |only
 man/is_state.Rd                    |only
 man/lgas_ng.Rd                     |   10 
 man/lgas_nigeria.Rd                |    6 
 man/map_ng.Rd                      |   94 +++++
 man/states.Rd                      |    7 
 tests/testthat/data/pvc2015.rds    |only
 tests/testthat/test-lgas_nigeria.R |   16 -
 tests/testthat/test-map_nigeria.R  |  428 +++++++++++++++++++++++++-
 tests/testthat/test-numbers.R      |    4 
 tests/testthat/test-political.R    |   34 ++
 vignettes                          |only
 22 files changed, 1324 insertions(+), 161 deletions(-)

More information about naijR at CRAN
Permanent link

Package car updated to version 3.0-8 with previous version 3.0-7 dated 2020-03-11

Title: Companion to Applied Regression
Description: Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

Diff between car versions 3.0-7 dated 2020-03-11 and 3.0-8 dated 2020-05-21

 DESCRIPTION            |   12 
 MD5                    |   28 
 NAMESPACE              |  771 ++++++++---------
 NEWS                   |   14 
 R/Anova.R              |    9 
 R/Import.R             |    3 
 R/S.R                  | 2157 ++++++++++++++++++++++++-------------------------
 R/powerTransform.R     |    5 
 R/scatterplot.R        |  753 ++++++++---------
 R/strings2factors.R    |only
 inst/doc/embedding.pdf |binary
 man/Import.Rd          |   27 
 man/S.Rd               |   16 
 man/qqPlot.Rd          |    2 
 man/recode.Rd          |    2 
 man/strings2factors.Rd |only
 16 files changed, 1925 insertions(+), 1874 deletions(-)

More information about car at CRAN
Permanent link

Package nCal updated to version 2020.5-21 with previous version 2020.5-1 dated 2020-05-02

Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex. This package is described in Fong et al. (2013) <DOI:10.1093/bioinformatics/btt456>.
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <youyifong@gmail.com>

Diff between nCal versions 2020.5-1 dated 2020-05-02 and 2020.5-21 dated 2020-05-21

 DESCRIPTION                |   10 +++++-----
 MD5                        |    4 ++--
 inst/doc/nCal-vignette.pdf |binary
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about nCal at CRAN
Permanent link

Package krm updated to version 2020.5-20 with previous version 2019.12-11 dated 2019-12-10

Title: Kernel Based Regression Models
Description: Implements several methods for testing the variance component parameter in regression models that contain kernel-based random effects, including a maximum of adjusted scores test. Several kernels are supported, including a profile hidden Markov model mutual information kernel for protein sequence. This package is described in Fong et al. (2015) <DOI:10.1093/biostatistics/kxu056>.
Author: Youyi Fong [cre], Saheli Datta [aut], Krisztian Sebestyen [aut], Steve Park [ctb], Dave Geyer [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>

Diff between krm versions 2019.12-11 dated 2019-12-10 and 2020.5-20 dated 2020-05-21

 ChangeLog       |    3 +++
 DESCRIPTION     |    8 ++++----
 MD5             |    8 ++++----
 src/U.h         |   38 +++++++++++++++++++-------------------
 tests/doRUnit.R |    2 +-
 5 files changed, 31 insertions(+), 28 deletions(-)

More information about krm at CRAN
Permanent link

Package epxToR updated to version 0.4-1 with previous version 0.4-0 dated 2019-09-19

Title: Import 'Epidata' XML Files '.epx'
Description: Import data from 'Epidata' XML files '.epx' and convert it to R data structures.
Author: Jean Pierre Decorps [aut, cre], David Whiting [aut], Bruno Granouillac [ctb], Laura March [ctb]
Maintainer: Jean Pierre Decorps <jean.pierre.decorps@gmail.com>

Diff between epxToR versions 0.4-0 dated 2019-09-19 and 0.4-1 dated 2020-05-21

 DESCRIPTION          |   12 ++++++------
 MD5                  |   10 +++++-----
 README.md            |   24 +-----------------------
 man/abstract.Rd      |    2 +-
 man/as.data.frame.Rd |    2 +-
 man/read.epx.Rd      |    2 +-
 6 files changed, 15 insertions(+), 37 deletions(-)

More information about epxToR at CRAN
Permanent link

Package EHRtemporalVariability updated to version 1.1.0 with previous version 1.0.4 dated 2020-03-28

Title: Delineating Temporal Dataset Shifts in Electronic Health Records
Description: Functions to delineate temporal dataset shifts in Electronic Health Records through the projection and visualization of dissimilarities among data temporal batches. This is done through the estimation of data statistical distributions over time and their projection in non-parametric statistical manifolds, uncovering the patterns of the data latent temporal variability. 'EHRtemporalVariability' is particularly suitable for multi-modal data and categorical variables with a high number of values, common features of biomedical data where traditional statistical process control or time-series methods may not be appropriate. 'EHRtemporalVariability' allows you to explore and identify dataset shifts through visual analytics formats such as Data Temporal heatmaps and Information Geometric Temporal (IGT) plots. An additional 'EHRtemporalVariability' Shiny app can be used to load and explore the package results and even to allow the use of these functions to those users non-experienced in R coding. Preprint published in medRxiv (Sáez et al. 2020) <doi:10.1101/2020.04.07.20056564>.
Author: Carlos Sáez [aut, cre], Alba Gutiérrez-Sacristán [aut], Isaac Kohane [aut], Juan M García-Gómez [aut], Paul Avillach [aut], Biomedical Data Science Lab, Universitat Politècnica de València (Spain) [cph], Department of Biomedical Informatics, Harvard Medical School [cph]
Maintainer: Carlos Sáez <carsaesi@upv.es>

Diff between EHRtemporalVariability versions 1.0.4 dated 2020-03-28 and 1.1.0 dated 2020-05-21

 DESCRIPTION                              |   27 +++++-
 MD5                                      |   40 +++++-----
 NAMESPACE                                |    1 
 NEWS.md                                  |   10 ++
 R/allClasses.R                           |   12 ++-
 R/allGenerics.R                          |   20 +++--
 R/allMethods.R                           |   22 ++++-
 R/estimateIGTTrajectory.R                |only
 R/icd9toPheWAS.R                         |   11 ++
 R/igtProjectionCore.R                    |   16 ++--
 README.md                                |   19 +++-
 inst/doc/EHRtemporalVariability.R        |   47 +++++++++---
 inst/doc/EHRtemporalVariability.Rmd      |  102 +++++++++++++++++++++-----
 inst/doc/EHRtemporalVariability.html     |  120 ++++++++++++++++++++++++-------
 man/estimateIGTProjection-methods.Rd     |   16 +++-
 man/estimateIGTTrajectory-methods.Rd     |only
 man/icd9toPheWAS.Rd                      |    1 
 man/plotIGTProjection-methods.Rd         |   14 ++-
 vignettes/EHRtemporalVariability.Rmd     |  102 +++++++++++++++++++++-----
 vignettes/EHRtemporalVariabilityHelp.pdf |binary
 vignettes/createAutomaticPDFfunctions.R  |    6 -
 vignettes/demoExportRDataForShinyApp.R   |only
 vignettes/dth_igtplot.png                |only
 23 files changed, 460 insertions(+), 126 deletions(-)

More information about EHRtemporalVariability at CRAN
Permanent link

Package caracas updated to version 1.0.1 with previous version 1.0.0 dated 2020-05-21

Title: Computer Algebra
Description: Computer algebra via the 'SymPy' library (<https://www.sympy.org/>). This makes it possible to solve equations symbolically, find symbolic integrals, symbolic sums and other important quantities.
Author: Mikkel Meyer Andersen [aut, cre, cph], Søren Højsgaard [aut, cph]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>

Diff between caracas versions 1.0.0 dated 2020-05-21 and 1.0.1 dated 2020-05-21

 DESCRIPTION                  |    6 ++---
 MD5                          |   22 ++++++++++----------
 NEWS.md                      |    4 +++
 R/init.R                     |   14 ++++++++++---
 build/vignette.rds           |binary
 inst/doc/fastest-route.Rmd   |    2 -
 inst/doc/sympy-object.html   |   46 +++++++++++++++++++++----------------------
 tests/testthat.R             |    9 +++++++-
 tests/testthat/test-linalg.R |    2 +
 tests/testthat/test-subset.R |    4 +++
 tests/testthat/test-vector.R |    4 +++
 vignettes/fastest-route.Rmd  |    2 -
 12 files changed, 72 insertions(+), 43 deletions(-)

More information about caracas at CRAN
Permanent link

New package pkgndep with initial version 1.0.0
Package: pkgndep
Type: Package
Title: Check the Heaviness of Package Dependencies
Version: 1.0.0
Date: 2020-05-13
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Depends: R (>= 3.5.0)
Imports: ComplexHeatmap (>= 2.0.0), GetoptLong, utils, grid, crayon, callr
Suggests: knitr
Description: It checks the heaviness of the packages that user's package depends on. For each package listed in the "Depends", "Imports" and "Suggests" fields in the DESCRIPTION file, it opens a new R session, loads the package and counts the number of namespaces that are loaded. The summary of the dependencies is visualized by a customized heatmap. Examples of dependency analysis can be found at <https://jokergoo.github.io/pkgndep/stat/>.
URL: https://github.com/jokergoo/pkgndep
VignetteBuilder: knitr
License: MIT + file LICENSE
NeedsCompilation: no
Packaged: 2020-05-13 18:37:21 UTC; jokergoo
Repository: CRAN
Date/Publication: 2020-05-21 09:30:02 UTC

More information about pkgndep at CRAN
Permanent link

Package MareyMap updated to version 1.3.5 with previous version 1.3.4 dated 2017-10-06

Title: Estimation of Meiotic Recombination Rates Using Marey Maps
Description: Local recombination rates are graphically estimated across a genome using Marey maps.
Author: Aurélie Siberchicot, Clément Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>

Diff between MareyMap versions 1.3.4 dated 2017-10-06 and 1.3.5 dated 2020-05-21

 DESCRIPTION           |    7 +++----
 MD5                   |    8 ++++----
 R/LocalRateQuery.R    |    2 +-
 build/vignette.rds    |binary
 inst/doc/vignette.pdf |binary
 5 files changed, 8 insertions(+), 9 deletions(-)

More information about MareyMap at CRAN
Permanent link

Package anthro updated to version 0.9.3 with previous version 0.9.2 dated 2020-01-08

Title: Computation of the WHO Child Growth Standards
Description: Provides WHO Child Growth Standards (z-scores) with confidence intervals and standard errors around the prevalence estimates, taking into account complex sample designs. More information on the methods is available online: <http://www.who.int/childgrowth/standards/en/>.
Author: Dirk Schumacher [aut, cre], Elaine Borghi [ctb], Jonathan Polonsky [ctb]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>

Diff between anthro versions 0.9.2 dated 2020-01-08 and 0.9.3 dated 2020-05-21

 DESCRIPTION                                    |    8 
 MD5                                            |   26 +-
 NEWS.md                                        |   11 
 R/prevalence.R                                 |  283 ++++++++++---------------
 R/utils.R                                      |    5 
 R/z-score-helper.R                             |    7 
 R/z-score-weight-for-lenhei.R                  |    1 
 R/z-score.R                                    |    2 
 README.md                                      |   20 -
 man/anthro_prevalence.Rd                       |    2 
 man/anthro_zscores.Rd                          |    2 
 tests/testthat/test-utils.R                    |    4 
 tests/testthat/test-zscore-weight-for-lenhei.R |   12 +
 tests/testthat/test-zscores.R                  |   28 ++
 14 files changed, 206 insertions(+), 205 deletions(-)

More information about anthro at CRAN
Permanent link

Package mctest updated to version 1.3 with previous version 1.2.5 dated 2019-11-10

Title: Multicollinearity Diagnostic Measures
Description: Package computes popular and widely used multicollinearity diagnostic measures <doi:10.17576/jsm-2019-4809-26> and <doi:10.32614/RJ-2016-062> . Package also indicates which regressors may be the reason of collinearity among regressors.
Author: Imdad Ullah Muhammad [aut, cre] (<https://orcid.org/0000-0002-1315-491X>), Aslam Muhammad [aut, ctb]
Maintainer: Imdad Ullah Muhammad <mimdadasad@gmail.com>

Diff between mctest versions 1.2.5 dated 2019-11-10 and 1.3 dated 2020-05-21

 DESCRIPTION           |    6 +++---
 MD5                   |   28 ++++++++++++++--------------
 NAMESPACE             |    2 +-
 R/eigp.R              |   28 ++++++++++++++++++----------
 R/imcdiag.R           |   13 ++++++++-----
 R/mc.plot.R           |   39 ++++++++++++++++++++++-----------------
 R/mcdiag.R            |   25 ++++++++++++++-----------
 R/omcdiag.R           |   13 ++++++++-----
 inst/NEWS.Rd          |    9 +++++++++
 man/eigp.Rd           |   18 +++++++++---------
 man/imcdiag.Rd        |   35 ++++++++++++++++-------------------
 man/mc.plot.Rd        |   22 +++++++++++-----------
 man/mctest-package.Rd |    2 ++
 man/mctest.Rd         |   50 ++++++++++++++++++++++++--------------------------
 man/omcdiag.Rd        |   33 ++++++++++++++++-----------------
 15 files changed, 175 insertions(+), 148 deletions(-)

More information about mctest at CRAN
Permanent link

Package RPEXE.RPEXT updated to version 0.0.2 with previous version 0.0.1 dated 2017-05-08

Title: Reduced Piecewise Exponential Estimate/Test Software
Description: This reduced piecewise exponential survival software implements the likelihood ratio test and backward elimination procedure in Han, Schell, and Kim (2012 <doi:10.1080/19466315.2012.698945>, 2014 <doi:10.1002/sim.5915>), and Han et al. (2016 <doi:10.1111/biom.12590>). Inputs to the program can be either times when events/censoring occur or the vectors of total time on test and the number of events. Outputs of the programs are times and the corresponding p-values in the backward elimination. Details about the model and implementation are given in Han et al. 2014. This program can run in R version 3.2.2 and above.
Author: Gang Han [aut, cre], Yu Zhang [aut]
Maintainer: Gang Han <hangang.true@gmail.com>

Diff between RPEXE.RPEXT versions 0.0.1 dated 2017-05-08 and 0.0.2 dated 2020-05-21

 DESCRIPTION               |    8 
 MD5                       |   14 
 NEWS.md                   |only
 R/totaltest.R             |  247 +++++------
 README.md                 |only
 build/vignette.rds        |binary
 inst/doc/RPEXE.RPEXT.R    |  290 ++++++-------
 inst/doc/RPEXE.RPEXT.html | 1011 ++++++++++++++++++++++++++++------------------
 man/RPEXE.RPEXT.Rd        |    1 
 9 files changed, 922 insertions(+), 649 deletions(-)

More information about RPEXE.RPEXT at CRAN
Permanent link

Package WeMix updated to version 3.1.4 with previous version 3.1.3 dated 2020-01-08

Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels.
Author: Paul Bailey [aut, cre], Claire Kelley [aut], Trang Nguyen [aut], Huade Huo [aut], Christian Kjeldsen [ctb] (tests with TIMSS data).
Maintainer: Paul Bailey <pbailey@air.org>

Diff between WeMix versions 3.1.3 dated 2020-01-08 and 3.1.4 dated 2020-05-21

 WeMix-3.1.3/WeMix/inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.html |only
 WeMix-3.1.3/WeMix/inst/doc/Weighted_Linear_Mixed_Effects_Models.html            |only
 WeMix-3.1.4/WeMix/DESCRIPTION                                                   |    8 ++---
 WeMix-3.1.4/WeMix/MD5                                                           |   14 +++++-----
 WeMix-3.1.4/WeMix/build/vignette.rds                                            |binary
 WeMix-3.1.4/WeMix/inst/NEWS.Rd                                                  |    8 +++++
 WeMix-3.1.4/WeMix/inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.pdf  |only
 WeMix-3.1.4/WeMix/inst/doc/Weighted_Linear_Mixed_Effects_Models.Rmd             |    5 ++-
 WeMix-3.1.4/WeMix/inst/doc/Weighted_Linear_Mixed_Effects_Models.pdf             |only
 WeMix-3.1.4/WeMix/vignettes/Weighted_Linear_Mixed_Effects_Models.Rmd            |    5 ++-
 10 files changed, 25 insertions(+), 15 deletions(-)

More information about WeMix at CRAN
Permanent link

Package SeerMapperWest updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-12

Title: Supplemental U.S. 2000 Census Tract Boundaries for 13 Western States without Seer Registries for 'SeerMapper'
Description: Provides supplemental 2000 census tract boundaries for the 13 states without Seer Registries that are west of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. 2000 Census data and is in the public domain. Updated to Alber Equal Area projection.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapperWest versions 1.2.0 dated 2017-04-12 and 1.2.2 dated 2020-05-21

 SeerMapperWest-1.2.0/SeerMapperWest/data/tr16_d00.rda             |only
 SeerMapperWest-1.2.2/SeerMapperWest/DESCRIPTION                   |   22 
 SeerMapperWest-1.2.2/SeerMapperWest/MD5                           |   37 -
 SeerMapperWest-1.2.2/SeerMapperWest/data/datalist                 |   27 
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr05_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr08_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr20_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr27_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr29_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr30_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr31_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr32_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr38_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr41_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr46_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr48_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/data/tr56_d00.rda             |binary
 SeerMapperWest-1.2.2/SeerMapperWest/inst/NEWS                     |    8 
 SeerMapperWest-1.2.2/SeerMapperWest/man/SeerMapperWest-package.Rd |   20 
 SeerMapperWest-1.2.2/SeerMapperWest/man/trXX_dXX.Rd               |  322 ++++------
 20 files changed, 220 insertions(+), 216 deletions(-)

More information about SeerMapperWest at CRAN
Permanent link

Package SeerMapperRegs updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-10

Title: Supplemental U.S. 2000 Census Tract Boundaries for 19 States with Seer Registries for 'SeerMapper'
Description: Provides supplemental 2000 census tract boundaries for the 19 states containing Seer Registries for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. Census data and is in the public domain.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapperRegs versions 1.2.0 dated 2017-04-10 and 1.2.2 dated 2020-05-21

 DESCRIPTION                   |   22 +-
 MD5                           |   44 +++--
 data/datalist                 |   34 ++--
 data/tr02_d00.rda             |binary
 data/tr04_d00.rda             |binary
 data/tr06_d00.rda             |binary
 data/tr09_d00.rda             |binary
 data/tr13_d00.rda             |binary
 data/tr15_d00.rda             |binary
 data/tr16_d00.rda             |only
 data/tr19_d00.rda             |binary
 data/tr21_d00.rda             |binary
 data/tr22_d00.rda             |binary
 data/tr25_d00.rda             |only
 data/tr26_d00.rda             |binary
 data/tr34_d00.rda             |binary
 data/tr35_d00.rda             |binary
 data/tr36_d00.rda             |only
 data/tr40_d00.rda             |binary
 data/tr49_d00.rda             |binary
 data/tr53_d00.rda             |binary
 data/tr55_d00.rda             |only
 inst/NEWS                     |   10 +
 man/SeerMapperRegs-package.Rd |  254 +++++++++++++++++----------------
 man/trXX_dXX.Rd               |  321 ++++++++++++++++++++++--------------------
 25 files changed, 367 insertions(+), 318 deletions(-)

More information about SeerMapperRegs at CRAN
Permanent link

Package SeerMapperEast updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-12

Title: Supplemental U.S. 2000 Census Tract Boundaries for 20 Eastern States, District and Territory without Seer Registries for 'SeerMapper'
Description: Provides supplemental 2000 census tract boundaries for the 20 states, district and territory without Seer Registries that are east of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. Census data and is in the public domain.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapperEast versions 1.2.0 dated 2017-04-12 and 1.2.2 dated 2020-05-21

 SeerMapperEast-1.2.0/SeerMapperEast/data/tr25_d00.rda             |only
 SeerMapperEast-1.2.0/SeerMapperEast/data/tr36_d00.rda             |only
 SeerMapperEast-1.2.0/SeerMapperEast/data/tr55_d00.rda             |only
 SeerMapperEast-1.2.2/SeerMapperEast/DESCRIPTION                   |   24 
 SeerMapperEast-1.2.2/SeerMapperEast/MD5                           |   53 -
 SeerMapperEast-1.2.2/SeerMapperEast/data/datalist                 |   43 -
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr01_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr10_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr11_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr12_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr17_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr18_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr23_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr24_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr28_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr33_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr37_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr39_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr42_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr44_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr45_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr47_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr50_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr51_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr54_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/data/tr72_d00.rda             |binary
 SeerMapperEast-1.2.2/SeerMapperEast/inst/NEWS                     |   10 
 SeerMapperEast-1.2.2/SeerMapperEast/man/SeerMapperEast-package.Rd |  169 ++--
 SeerMapperEast-1.2.2/SeerMapperEast/man/trXX_dXX.Rd               |  365 ++++------
 29 files changed, 325 insertions(+), 339 deletions(-)

More information about SeerMapperEast at CRAN
Permanent link

Package SeerMapper2010West updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-14

Title: Supplemental U.S. 2010 Census Tract Boundaries for 13 Western States without Seer Registries for 'SeerMapper'
Description: Provides supplemental 2010 census tract boundaries for the 13 states without Seer Registries that are west of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. 2010 Census data and is in public domain.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapper2010West versions 1.2.0 dated 2017-04-14 and 1.2.2 dated 2020-05-21

 SeerMapper2010West-1.2.0/SeerMapper2010West/data/tr16_d10.rda                 |only
 SeerMapper2010West-1.2.2/SeerMapper2010West/DESCRIPTION                       |   21 
 SeerMapper2010West-1.2.2/SeerMapper2010West/MD5                               |   37 -
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/datalist                     |   27 
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr05_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr08_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr20_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr27_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr29_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr30_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr31_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr32_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr38_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr41_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr46_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr48_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/data/tr56_d10.rda                 |binary
 SeerMapper2010West-1.2.2/SeerMapper2010West/inst/NEWS                         |    8 
 SeerMapper2010West-1.2.2/SeerMapper2010West/man/SeerMapper2010West-package.Rd |   17 
 SeerMapper2010West-1.2.2/SeerMapper2010West/man/trXX_dXX.Rd                   |  318 ++++------
 20 files changed, 215 insertions(+), 213 deletions(-)

More information about SeerMapper2010West at CRAN
Permanent link

Package SeerMapper2010Regs updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-13

Title: Supplemental U.S. 2010 Census Tract Boundaries for 19 States with Seer Registries for 'SeerMapper'
Description: Provides supplemental 2010 census tract boundaries of the 19 states containing Seer Registries for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. 2010 Census data and is in public domain.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapper2010Regs versions 1.2.0 dated 2017-04-13 and 1.2.2 dated 2020-05-21

 DESCRIPTION                       |   21 +-
 MD5                               |   44 ++--
 data/datalist                     |   34 ++-
 data/tr02_d10.rda                 |binary
 data/tr04_d10.rda                 |binary
 data/tr06_d10.rda                 |binary
 data/tr09_d10.rda                 |binary
 data/tr13_d10.rda                 |binary
 data/tr15_d10.rda                 |binary
 data/tr16_d10.rda                 |only
 data/tr19_d10.rda                 |binary
 data/tr21_d10.rda                 |binary
 data/tr22_d10.rda                 |binary
 data/tr25_d10.rda                 |only
 data/tr26_d10.rda                 |binary
 data/tr34_d10.rda                 |binary
 data/tr35_d10.rda                 |binary
 data/tr36_d10.rda                 |only
 data/tr40_d10.rda                 |binary
 data/tr49_d10.rda                 |binary
 data/tr53_d10.rda                 |binary
 data/tr55_d10.rda                 |only
 inst/NEWS                         |   16 +
 man/SeerMapper2010Regs-package.Rd |  261 ++++++++++++++---------------
 man/trXX_dXX.Rd                   |  339 +++++++++++++++++++-------------------
 25 files changed, 370 insertions(+), 345 deletions(-)

More information about SeerMapper2010Regs at CRAN
Permanent link

Package SeerMapper2010East updated to version 1.2.2 with previous version 1.2.0 dated 2017-04-14

Title: Supplemental U.S. 2010 Census Tract Boundaries for 20 Eastern States, DC and PR without Registries for 'SeerMapper'
Description: Provides supplemental 2010 census tract boundary package for 20 states without Seer Registries that are east of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U.S. Census data and is in public domain.
Author: Jim Pearson with data provided by U.S. Census Bureau
Maintainer: Fanni Zhang <zhangf@imsweb.com>

Diff between SeerMapper2010East versions 1.2.0 dated 2017-04-14 and 1.2.2 dated 2020-05-21

 SeerMapper2010East-1.2.0/SeerMapper2010East/data/tr25_d10.rda                 |only
 SeerMapper2010East-1.2.0/SeerMapper2010East/data/tr36_d10.rda                 |only
 SeerMapper2010East-1.2.0/SeerMapper2010East/data/tr55_d10.rda                 |only
 SeerMapper2010East-1.2.2/SeerMapper2010East/DESCRIPTION                       |   23 
 SeerMapper2010East-1.2.2/SeerMapper2010East/MD5                               |   53 -
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/datalist                     |   43 -
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr01_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr10_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr11_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr12_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr17_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr18_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr23_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr24_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr28_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr33_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr37_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr39_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr42_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr44_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr45_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr47_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr50_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr51_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr54_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/data/tr72_d10.rda                 |binary
 SeerMapper2010East-1.2.2/SeerMapper2010East/inst/NEWS                         |   18 
 SeerMapper2010East-1.2.2/SeerMapper2010East/man/SeerMapper2010East-package.Rd |  167 ++--
 SeerMapper2010East-1.2.2/SeerMapper2010East/man/trXX_dXX.Rd                   |  363 ++++------
 29 files changed, 329 insertions(+), 338 deletions(-)

More information about SeerMapper2010East at CRAN
Permanent link

Package markovchain updated to version 0.8.5 with previous version 0.8.4.1 dated 2020-05-03

Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of their structural proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut, cre] (<https://orcid.org/0000-0002-0315-8888>), Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb] (<https://orcid.org/0000-0001-7242-1873>), Deepak Yadav [aut], Ignacio Cordón [aut] (<https://orcid.org/0000-0002-3152-0231>), Vandit Jain [ctb], Toni Giorgino [ctb] (<https://orcid.org/0000-0001-6449-0596>), Richèl J.C. Bilderbeek [ctb] (<https://orcid.org/0000-0003-1107-7049>), Daniel Ebbert [ctb] (<https://orcid.org/0000-0003-3666-7205>), Shreyash Maheshwari [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>

Diff between markovchain versions 0.8.4.1 dated 2020-05-03 and 0.8.5 dated 2020-05-21

 ChangeLog                                            |    2 +
 DESCRIPTION                                          |   16 ++++++++-----
 MD5                                                  |   18 +++++++-------
 NEWS                                                 |    4 +--
 R/statisticalTests.R                                 |   23 ++++++++++++++-----
 inst/doc/an_introduction_to_markovchain_package.Rmd  |    7 ++++-
 inst/doc/an_introduction_to_markovchain_package.pdf  |binary
 inst/doc/gsoc_2017_additions.pdf                     |binary
 inst/doc/higher_order_markov_chains.pdf              |binary
 vignettes/an_introduction_to_markovchain_package.Rmd |    7 ++++-
 10 files changed, 53 insertions(+), 24 deletions(-)

More information about markovchain at CRAN
Permanent link

Package caracas updated to version 1.0.0 with previous version 0.0.1 dated 2020-01-26

Title: Computer Algebra
Description: Computer algebra via the 'SymPy' library (<https://www.sympy.org/>). This makes it possible to solve equations symbolically, find symbolic integrals, symbolic sums and other important quantities.
Author: Mikkel Meyer Andersen [aut, cre, cph], Søren Højsgaard [aut, cph]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>

Diff between caracas versions 0.0.1 dated 2020-01-26 and 1.0.0 dated 2020-05-21

 DESCRIPTION                                |    8 -
 MD5                                        |  105 ++++++++++++++++--
 NAMESPACE                                  |   54 +++++++++
 NEWS.md                                    |only
 R/Ops-math.R                               |only
 R/as_symbol.R                              |only
 R/calculus.R                               |only
 R/init.R                                   |   98 +++++++++-------
 R/lin-alg.R                                |only
 R/output.R                                 |only
 R/parse_python.R                           |only
 R/simplify.R                               |only
 R/solve.R                                  |only
 R/subset.R                                 |only
 R/symbol.R                                 |only
 R/vector.R                                 |only
 README.md                                  |only
 build/vignette.rds                         |binary
 inst/doc/fastest-route.R                   |only
 inst/doc/fastest-route.Rmd                 |only
 inst/doc/fastest-route.html                |only
 inst/doc/introduction.R                    |   63 ++++------
 inst/doc/introduction.Rmd                  |   99 +++++------------
 inst/doc/introduction.html                 |  168 ++++++++++++-----------------
 inst/doc/naive-bayes.R                     |only
 inst/doc/naive-bayes.Rmd                   |only
 inst/doc/naive-bayes.html                  |only
 inst/doc/reference.R                       |only
 inst/doc/reference.Rmd                     |only
 inst/doc/reference.html                    |only
 inst/doc/sympy-object.R                    |only
 inst/doc/sympy-object.Rmd                  |only
 inst/doc/sympy-object.html                 |only
 man/Math.caracas_symbol.Rd                 |only
 man/Ops.caracas_symbol.Rd                  |only
 man/as.character.caracas_symbol.Rd         |only
 man/as_character_matrix.Rd                 |only
 man/as_r.Rd                                |only
 man/as_symbol.Rd                           |only
 man/der.Rd                                 |only
 man/der2.Rd                                |only
 man/determinant.caracas_symbol.Rd          |only
 man/diag-set-.caracas_symbol.Rd            |only
 man/diag-set.Rd                            |only
 man/diag.Rd                                |only
 man/diag.caracas_symbol.Rd                 |only
 man/dim.caracas_symbol.Rd                  |only
 man/doit.Rd                                |only
 man/eigen_val.Rd                           |only
 man/eigen_vec.Rd                           |only
 man/eval_to_symbol.Rd                      |only
 man/expand.Rd                              |only
 man/expand_log.Rd                          |only
 man/expand_trig.Rd                         |only
 man/get_sympy.Rd                           |    1 
 man/grapes-times-grapes-.caracas_symbol.Rd |only
 man/grapes-times-grapes.Rd                 |only
 man/have_sympy.Rd                          |    1 
 man/install_sympy.Rd                       |    1 
 man/intf.Rd                                |only
 man/inv.Rd                                 |only
 man/limf.Rd                                |only
 man/print.caracas_solve_sys_sol.Rd         |only
 man/print.caracas_symbol.Rd                |only
 man/prodf.Rd                               |only
 man/simplify.Rd                            |only
 man/solve_lin.Rd                           |only
 man/solve_sys.Rd                           |only
 man/sub-.caracas_symbol.Rd                 |only
 man/subs.Rd                                |only
 man/subs_lst.Rd                            |only
 man/subset-.caracas_symbol.Rd              |only
 man/sum.caracas_symbol.Rd                  |only
 man/sumf.Rd                                |only
 man/symbol.Rd                              |only
 man/sympy_version.Rd                       |    1 
 man/t.caracas_symbol.Rd                    |only
 man/tex.Rd                                 |only
 tests/testthat/test-as_r.R                 |only
 tests/testthat/test-as_symbol.R            |only
 tests/testthat/test-calculus.R             |only
 tests/testthat/test-linalg.R               |only
 tests/testthat/test-ops-math.R             |only
 tests/testthat/test-output.R               |only
 tests/testthat/test-simplify.R             |only
 tests/testthat/test-solve.R                |only
 tests/testthat/test-subset.R               |only
 tests/testthat/test-symbol.R               |only
 tests/testthat/test-vector.R               |only
 vignettes/fastest-route.Rmd                |only
 vignettes/introduction.Rmd                 |   99 +++++------------
 vignettes/naive-bayes.Rmd                  |only
 vignettes/reference.Rmd                    |only
 vignettes/sympy-object.Rmd                 |only
 94 files changed, 369 insertions(+), 329 deletions(-)

More information about caracas at CRAN
Permanent link

Package Boruta updated to version 7.0.0 with previous version 6.0.0 dated 2018-07-17

Title: Wrapper Algorithm for All Relevant Feature Selection
Description: An all relevant feature selection wrapper algorithm. It finds relevant features by comparing original attributes' importance with importance achievable at random, estimated using their permuted copies (shadows).
Author: Miron Bartosz Kursa [aut, cre] (<https://orcid.org/0000-0001-7672-648X>), Witold Remigiusz Rudnicki [aut]
Maintainer: Miron Bartosz Kursa <M.Kursa@icm.edu.pl>

Diff between Boruta versions 6.0.0 dated 2018-07-17 and 7.0.0 dated 2020-05-21

 DESCRIPTION                  |   16 +++---
 MD5                          |   34 +++++++-----
 NAMESPACE                    |    1 
 R/Boruta.R                   |   43 ++++++++++++++--
 R/importance.R               |   14 ++---
 build/vignette.rds           |binary
 data                         |only
 inst/NEWS                    |    7 ++
 inst/doc/inahurry.R          |    1 
 inst/doc/inahurry.Rnw        |   25 ++++++---
 inst/doc/inahurry.pdf        |binary
 man/Boruta.Rd                |   47 ++++++++++++++---
 man/getImpXgboost.Rd         |    4 -
 man/plot.Boruta.Rd           |   13 +++-
 man/plotImpHistory.Rd        |   14 ++++-
 man/srx.Rd                   |only
 tests/testthat/testBasic.R   |  114 ++++++++++++++++++++++++++++++++++++++++++-
 tests/testthat/testSources.R |only
 vignettes/algo.pdf           |only
 vignettes/inahurry.Rnw       |   25 ++++++---
 20 files changed, 285 insertions(+), 73 deletions(-)

More information about Boruta at CRAN
Permanent link

Package metan updated to version 1.6.0 with previous version 1.5.1 dated 2020-04-25

Title: Multi Environment Trials Analysis
Description: Performs stability analysis of multi-environment trial data using parametric and non-parametric methods. Parametric methods includes Additive Main Effects and Multiplicative Interaction (AMMI) analysis by Gauch (2013) <doi:10.2135/cropsci2013.04.0241>, Genotype plus Genotype-Environment (GGE) biplot analysis by Yan & Kang (2003) <doi:10.1201/9781420040371>, joint Regression Analysis by Eberhart & Russel (1966) (<doi:10.2135/cropsci1966.0011183X000600010011x>), ecovalence by Wricke (1965), genotypic confidence index by Annicchiarico (1992), Murakami & Cruz's (2004) method <doi:10.12702/1984-7033.v04n01a02>, stability variance by Shukla (1972) <doi:10.1038/hdy.1972.87>, weighted average of absolute scores by Olivoto et al. (2019a) <doi:10.2134/agronj2019.03.0220>, and multi-trait stability index by Olivoto et al. (2019b) <doi:10.2134/agronj2019.03.0221>. Non-parametric methods includes superiority index by Lin & Binns (1988) <doi:10.4141/cjps88-018>, nonparametric measures of phenotypic stability by Huehn (1990) <https://link.springer.com/article/10.1007/BF00024241>, TOP third statistic by Fox et al. (1990) <doi:10.1007/BF00040364>, geometric adaptability index described by Shahbazi (2019) <doi:10.1016/j.scienta.2019.04.047>. Functions for computing biometrical analysis such as path analysis, canonical correlation, partial correlation, clustering analysis, and tools for inspecting, manipulating, summarizing and plotting typical multi-environment trial data are also provided.
Author: Tiago Olivoto [aut, cre, cph] (<https://orcid.org/0000-0002-0241-9636>)
Maintainer: Tiago Olivoto <tiagoolivoto@gmail.com>

Diff between metan versions 1.5.1 dated 2020-04-25 and 1.6.0 dated 2020-05-21

 DESCRIPTION                   |    9 -
 MD5                           |  114 +++++++++--------
 NAMESPACE                     |    7 +
 NEWS.md                       |   15 ++
 R/AMMI_indexes.R              |    4 
 R/Smith_Hazel.R               |only
 R/can_cor.R                   |   12 -
 R/coincidence_index.R         |only
 R/corr_ci.R                   |    6 
 R/corr_ss.R                   |   11 -
 R/covcor_design.R             |    3 
 R/fai_blup.R                  |  189 ++++++++++++++++++-----------
 R/gamem.R                     |   20 +--
 R/gamem_met.R                 |    5 
 R/get_model_data.R            |  115 ++++++++++++++----
 R/gge.R                       |   54 +++++---
 R/make_mat.R                  |    4 
 R/mgidi.R                     |  267 +++++++++++++++++++++++++++++-------------
 R/mtsi.R                      |    2 
 R/path_coeff.R                |    4 
 R/performs_ammi.R             |   30 +++-
 R/plot_blup.R                 |   65 ++++++++--
 R/plot_ci.R                   |   12 +
 R/plot_scores.R               |   88 ++++++++-----
 R/resende_indexes.R           |   22 ++-
 R/waas.R                      |   19 +-
 R/waas_means.R                |   10 -
 R/waasb.R                     |   22 ++-
 R/zzz.R                       |    5 
 build/metan.pdf               |only
 build/vignette.rds            |binary
 inst/doc/metan_start.R        |   19 +-
 inst/doc/metan_start.Rmd      |   21 +--
 inst/doc/metan_start.html     |  105 ++++++++--------
 man/Resende_indexes.Rd        |   21 ++-
 man/Smith_Hazel.Rd            |only
 man/coincidence_index.Rd      |only
 man/corr_ci.Rd                |    6 
 man/corr_ss.Rd                |   10 -
 man/fai_blup.Rd               |   14 +-
 man/figures/README-AMMI-1.png |binary
 man/figures/README-BLUP-1.png |binary
 man/figures/README-GGE-1.png  |binary
 man/gamem.Rd                  |    4 
 man/gamem_met.Rd              |    1 
 man/get_model_data.Rd         |   10 -
 man/mgidi.Rd                  |  181 ++++++++++++++++------------
 man/performs_ammi.Rd          |   18 ++
 man/plot.fai_blup.Rd          |   15 +-
 man/plot.mgidi.Rd             |   25 +++
 man/plot.sh.Rd                |only
 man/plot_blup.Rd              |   20 ++-
 man/plot_ci.Rd                |    4 
 man/plot_scores.Rd            |   15 ++
 man/print.coincidence.Rd      |only
 man/print.sh.Rd               |only
 man/waas.Rd                   |   10 -
 man/waas_means.Rd             |   12 -
 man/waasb.Rd                  |   16 +-
 vignettes/indexes.RData       |binary
 vignettes/metan_start.Rmd     |   21 +--
 vignettes/metanref.bib        |   44 ++++++
 62 files changed, 1108 insertions(+), 598 deletions(-)

More information about metan at CRAN
Permanent link

Package GenEst updated to version 1.4.3 with previous version 1.4.2 dated 2020-03-14

Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre], Juniper Simonis [aut], Lisa Madsen [aut], Manuela Huso [aut], Paul Rabie [aut], Jeffrey Mintz [aut], Robert Wolpert [aut], Jared Studyvin [aut], Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@usgs.gov>

Diff between GenEst versions 1.4.2 dated 2020-03-14 and 1.4.3 dated 2020-05-21

 DESCRIPTION                         |    8 -
 MD5                                 |   32 +++---
 R/app_download_functions.R          |  177 ++++++++++++++++++++++++++++++------
 R/app_msg_functions.R               |   12 +-
 R/app_output_utilities.R            |    3 
 R/app_update_output.R               |    7 -
 R/app_utilities.R                   |    6 -
 R/carcass_persistence_functions.R   |  103 ++++++++++++++++----
 R/detection_probability_functions.R |   29 ++++-
 R/searcher_efficiency_functions.R   |   51 ++++++----
 README.md                           |    5 -
 inst/doc/GenEstGUI.html             |    4 
 inst/doc/command-line-example.html  |   84 ++++++++---------
 inst/doc/solar-examples.html        |    4 
 inst/doc/wind-examples.html         |    8 -
 man/app_download_functions.Rd       |    3 
 man/sizeCols.Rd                     |    2 
 17 files changed, 374 insertions(+), 164 deletions(-)

More information about GenEst at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.