Sun, 24 May 2020

Package psyosphere updated to version 0.1.6 with previous version 0.1.5 dated 2020-02-26

Title: Analyse GPS Data
Description: Analyse location data such as latitude, longitude, and elevation. Based on spherical trigonometry, variables such as speed, bearing, and distances can be calculated from moment to moment, depending on the sampling frequency of the equipment used, and independent of scale. Additionally, the package can plot tracks, coordinates, and shapes on maps, and sub-tracks can be selected with point-in-polygon or other techniques. The package is optimized to support behavioural science experiments with multiple tracks. It can detect and clean up errors in the data, and resulting data can be exported to be analysed in statistical software or geographic information systems (GIS).
Author: Benjamin Ziepert [cre, aut], Elze G Ufkes [ctb], Peter W de Vries [ctb]
Maintainer: Benjamin Ziepert <feedback-psyosphere@analyse-gps.com>

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Package partition updated to version 0.1.2 with previous version 0.1.1 dated 2019-12-12

Title: Agglomerative Partitioning Framework for Dimension Reduction
Description: A fast and flexible framework for agglomerative partitioning. 'partition' uses an approach called Direct-Measure-Reduce to create new variables that maintain the user-specified minimum level of information. Each reduced variable is also interpretable: the original variables map to one and only one variable in the reduced data set. 'partition' is flexible, as well: how variables are selected to reduce, how information loss is measured, and the way data is reduced can all be customized. 'partition' is based on the Partition framework discussed in Millstein et al. (2020) <doi: 10.1093/bioinformatics/btz661>.
Author: Joshua Millstein [aut], Malcolm Barrett [aut, cre] (<https://orcid.org/0000-0003-0299-5825>)
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>

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Package oddsratio updated to version 2.0.1 with previous version 2.0.0 dated 2019-06-13

Title: Odds Ratio Calculation for GAM(M)s & GLM(M)s
Description: Simplified odds ratio calculation of GAM(M)s & GLM(M)s. Provides structured output (data frame) of all predictors and their corresponding odds ratios and confident intervals for further analyses. It helps to avoid false references of predictors and increments by specifying these parameters in a list instead of using 'exp(coef(model))' (standard approach of odds ratio calculation for GLMs) which just returns a plain numeric output. For GAM(M)s, odds ratio calculation is highly simplified with this package since it takes care of the multiple 'predict()' calls of the chosen predictor while holding other predictors constant. Also, this package allows odds ratio calculation of percentage steps across the whole predictor distribution range for GAM(M)s. In both cases, confident intervals are returned additionally. Calculated odds ratio of GAM(M)s can be inserted into the smooth function plot.
Author: Patrick Schratz [aut, cre] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>

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Package ssgraph updated to version 1.12 with previous version 1.11 dated 2020-05-14

Title: Bayesian Graphical Estimation using Spike-and-Slab Priors
Description: Bayesian estimation for undirected graphical models using spike-and-slab priors. The package handles continuous, discrete, and mixed data.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>)
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>

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Package seqgendiff updated to version 1.2.2 with previous version 1.2.1 dated 2020-02-24

Title: RNA-Seq Generation/Modification for Simulation
Description: Generates/modifies RNA-seq data for use in simulations. We provide a suite of functions that will add a known amount of signal to a real RNA-seq dataset. The advantage of using this approach over simulating under a theoretical distribution is that common/annoying aspects of the data are more preserved, giving a more realistic evaluation of your method. The main functions are select_counts(), thin_diff(), thin_lib(), thin_gene(), thin_2group(), thin_all(), and effective_cor(). See Gerard (2020) <doi:10.1186/s12859-020-3450-9> for details on the implemented methods.
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>

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Package diagis updated to version 0.1.4 with previous version 0.1.3-1 dated 2018-01-25

Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate mean and variance computation, and weight diagnostic plot for generic importance sampling type results.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>

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Package eph updated to version 0.3.1 with previous version 0.3.0 dated 2020-03-08

Title: Argentina's Permanent Household Survey Data and Manipulation Utilities
Description: Tools to download and manipulate the Permanent Household Survey from Argentina (EPH is the Spanish acronym for Permanent Household Survey). e.g: get_microdata() for downloading the datasets, get_poverty_lines() for downloading the official poverty baskets, calculate_poverty() for the calculation of stating if a household is in poverty or not, following the official methodology. organize_panels() is used to concatenate observations from different periods, and organize_labels() adds the official labels to the data. The implemented methods are based on INDEC (2016) <http://www.estadistica.ec.gba.gov.ar/dpe/images/SOCIEDAD/EPH_metodologia_22_pobreza.pdf>. As this package works with the argentinian Permanent Household Survey and its main audience is from this country, the documentation was written in Spanish.
Author: Diego Kozlowski [aut, cre] (<https://orcid.org/0000-0002-5396-3471>), Pablo Tiscornia [aut], Guido Weksler [aut], Natsumi Shokida [aut], German Rosati [aut] (<https://orcid.org/0000-0002-9775-0435>)
Maintainer: Diego Kozlowski <diegokoz92@gmail.com>

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New package mma with initial version 10.3-2
Package: mma
Type: Package
Title: Multiple Mediation Analysis
Version: 10.3-2
Date: 2020-05-18
Author: Qingzhao Yu and Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Depends: R (>= 2.14.1), gbm, splines, survival, car, gplots
Imports: plotrix,lattice
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
Description: Used for general multiple mediation analysis. The analysis method is described in Yu et al. (2014) <doi:10.4172/2155-6180.1000189> "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189; and Yu et al.(2017) <DOI:10.1016/j.sste.2017.02.001> "Exploring racial disparity in obesity: a mediation analysis considering geo-coded environmental factors", published on Spatial and Spatio-temporal Epidemiology, 21, 13-23.
License: GPL (>= 2)
URL: https://www.r-project.org, https://publichealth.lsuhsc.edu/Faculty_pages/qyu/index.html
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2020-05-19 01:31:02 UTC; qyu
Repository: CRAN
Date/Publication: 2020-05-24 17:40:03 UTC

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Package ROI.plugin.neos updated to version 0.3-2 with previous version 0.3-1 dated 2019-02-16

Title: 'NEOS' Plug-in for the 'R' Optimization Interface
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package with a connection to the 'neos' server. 'ROI' optimization problems can be directly be sent to the 'neos' server and solution obtained in the typical 'ROI' style.
Author: Ronald Hochreiter [aut], Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

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Package psda updated to version 1.4.0 with previous version 1.3.3 dated 2019-12-09

Title: Polygonal Symbolic Data Analysis
Description: A toolbox in symbolic data framework as a statistical learning and data mining solution for symbolic polygonal data analysis. This study is a new approach in data analysis and it was proposed by Silva et al. (2019) <doi:10.1016/j.knosys.2018.08.009>. The package presents the estimation of main descriptive statistical measures, e.g, mean, covariance, variance, correlation and coefficient of variation. In addition, a method to obtain polygonal data from classical data is presented. Empirical probability distribution function based on symbolic polygonal histogram and a regression model with its main measures are presented.
Author: Wagner Silva [aut, cre, ths], Renata Souza [aut], Francisco Cysneiros [aut]
Maintainer: Wagner Silva <wjfs@cin.ufpe.br>

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Package kit updated to version 0.0.2 with previous version 0.0.1 dated 2020-05-08

Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>

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 man/setlevels.Rd |   49 +++---
 man/topn.Rd      |   94 +++++++----
 man/vswitch.Rd   |  150 ++++++++++---------
 src/init.c       |   12 +
 src/kit.h        |   19 +-
 src/psum.c       |  432 +++++++++++++++++++++++++++++++++++++++++++++++++++----
 src/utils.c      |  124 +++++++++++++--
 17 files changed, 1089 insertions(+), 509 deletions(-)

More information about kit at CRAN
Permanent link

Package ukpolice updated to version 0.2.0 with previous version 0.1.4 dated 2020-04-17

Title: Download Data on UK Police and Crime
Description: Downloads data from the 'UK Police' public data API, the full docs of which are available at <https://data.police.uk/docs/>. Includes data on police forces and police force areas, crime reports, and the use of stop-and-search powers.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>), Tierney Nicholas [aut] (<https://orcid.org/0000-0003-1460-8722>)
Maintainer: Evan Odell <evanodell91@gmail.com>

Diff between ukpolice versions 0.1.4 dated 2020-04-17 and 0.2.0 dated 2020-05-24

 ukpolice-0.1.4/ukpolice/R/neighbourhoods-specific.R                            |only
 ukpolice-0.1.4/ukpolice/R/utils-lat-lng.R                                      |only
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 ukpolice-0.2.0/ukpolice/DESCRIPTION                                            |   22 +-
 ukpolice-0.2.0/ukpolice/MD5                                                    |  107 +++++-----
 ukpolice-0.2.0/ukpolice/NAMESPACE                                              |    9 
 ukpolice-0.2.0/ukpolice/NEWS.md                                                |   19 +
 ukpolice-0.2.0/ukpolice/R/available-data.R                                     |only
 ukpolice-0.2.0/ukpolice/R/crime-at-location.R                                  |   73 +++++-
 ukpolice-0.2.0/ukpolice/R/crime-category.R                                     |    2 
 ukpolice-0.2.0/ukpolice/R/crime-no-location.R                                  |    9 
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 ukpolice-0.2.0/ukpolice/R/forces.R                                             |   15 -
 ukpolice-0.2.0/ukpolice/R/neighbourhood-all-specific.R                         |only
 ukpolice-0.2.0/ukpolice/R/neighbourhood-boundary.R                             |    2 
 ukpolice-0.2.0/ukpolice/R/neighbourhood-events.R                               |    6 
 ukpolice-0.2.0/ukpolice/R/neighbourhood-location.R                             |    6 
 ukpolice-0.2.0/ukpolice/R/neighbourhood-priorities.R                           |    4 
 ukpolice-0.2.0/ukpolice/R/neighbourhood-team.R                                 |    6 
 ukpolice-0.2.0/ukpolice/R/neighbourhoods.R                                     |    7 
 ukpolice-0.2.0/ukpolice/R/specific-crime-outcome.R                             |   11 -
 ukpolice-0.2.0/ukpolice/R/stop-search-force.R                                  |   16 +
 ukpolice-0.2.0/ukpolice/R/stop-search-location.R                               |   68 +++++-
 ukpolice-0.2.0/ukpolice/R/stop-search-no-location.R                            |   14 -
 ukpolice-0.2.0/ukpolice/R/street-crime-outcome.R                               |    6 
 ukpolice-0.2.0/ukpolice/R/street-crime.R                                       |    6 
 ukpolice-0.2.0/ukpolice/R/ukpolice-deprecated.R                                |only
 ukpolice-0.2.0/ukpolice/R/ukpolice-package.R                                   |   15 +
 ukpolice-0.2.0/ukpolice/R/utils-get-data.R                                     |   41 ++-
 ukpolice-0.2.0/ukpolice/R/utils-location-functions.R                           |only
 ukpolice-0.2.0/ukpolice/R/utils-paste-function.R                               |only
 ukpolice-0.2.0/ukpolice/README.md                                              |   62 +++++
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 ukpolice-0.2.0/ukpolice/inst/CITATION                                          |    4 
 ukpolice-0.2.0/ukpolice/inst/doc/introduction.html                             |    4 
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 ukpolice-0.2.0/ukpolice/man/ukc_crime_category.Rd                              |    2 
 ukpolice-0.2.0/ukpolice/man/ukc_crime_location.Rd                              |   48 +++-
 ukpolice-0.2.0/ukpolice/man/ukc_crime_no_location.Rd                           |    4 
 ukpolice-0.2.0/ukpolice/man/ukc_forces.Rd                                      |    4 
 ukpolice-0.2.0/ukpolice/man/ukc_neighbourhood_boundary.Rd                      |    2 
 ukpolice-0.2.0/ukpolice/man/ukc_neighbourhood_location.Rd                      |    2 
 ukpolice-0.2.0/ukpolice/man/ukc_neighbourhood_specific.Rd                      |   58 ++---
 ukpolice-0.2.0/ukpolice/man/ukc_neighbourhoods.Rd                              |    6 
 ukpolice-0.2.0/ukpolice/man/ukc_specific_outcome.Rd                            |    5 
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 ukpolice-0.2.0/ukpolice/man/ukc_stop_search_force.Rd                           |   15 +
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 ukpolice-0.2.0/ukpolice/man/ukc_street_crime.Rd                                |    2 
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 ukpolice-0.2.0/ukpolice/tests/testthat/test-crime-at-location.R                |   30 ++
 ukpolice-0.2.0/ukpolice/tests/testthat/test-empty-functions.R                  |    6 
 ukpolice-0.2.0/ukpolice/tests/testthat/test-forces.R                           |   22 +-
 ukpolice-0.2.0/ukpolice/tests/testthat/test-neighbourhood-boundary.R           |    2 
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 ukpolice-0.2.0/ukpolice/tests/testthat/test-stop-and-search.R                  |   53 ++++
 ukpolice-0.2.0/ukpolice/tests/testthat/test-street-crime.R                     |   10 
 62 files changed, 579 insertions(+), 249 deletions(-)

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New package xROI with initial version 0.9.16
Package: xROI
Title: Delineate Region of Interests (ROI's) and Extract Time-Series Data from Digital Repeat Photography Images
Version: 0.9.16
Date: 2020-05-24
Author: Bijan Seyednasrollah, Thomas Milliman, Andrew D. Richardson
Maintainer: Bijan Seyednasrollah <bijan.s.nasr@gmail.com>
Description: Digital repeat photography and near-surface remote sensing have been used by environmental scientists to study the environmental change for nearly a decade. However, a user-friendly, reliable, and robust platform to extract color-based statistics and time-series from a large stack of images is still lacking. Here, we present an interactive open-source toolkit, called 'xROI', that facilitate the process time-series extraction and improve the quality of the final data. 'xROI' provides a responsive environment for scientists to interactively a) delineate regions of interest (ROI), b) handle field of view (FOV) shifts, and c) extract and export time series data characterizing image color (i.e. red, green and blue channel digital numbers for the defined ROI). Using 'xROI', user can detect FOV shifts without minimal difficulty. The software gives user the opportunity to readjust the mask files or redraw new ones every time an FOV shift occurs. 'xROI' helps to significantly improve data accuracy and continuity.
Depends: R (>= 3.4.0)
Imports: colourpicker, data.table, graphics, jpeg, lubridate, methods, moments, RCurl, raster, rgdal, rjson, sp, stats, stringr, tiff, utils, shiny, shinyjs,
Suggests: knitr, testthat, rmarkdown, shinyBS, shinyAce, shinyTime, shinyFiles, shinydashboard, shinythemes, plotly
License: AGPL-3
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/bnasr/xROI/issues
RoxygenNote: 7.1.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-05-24 14:48:57 UTC; bijan
Repository: CRAN
Date/Publication: 2020-05-24 15:20:02 UTC

More information about xROI at CRAN
Permanent link

New package SparseTSCGM with initial version 3.0
Package: SparseTSCGM
Type: Package
Title: Sparse Time Series Chain Graphical Models
Version: 3.0
Date: 2020-05-23
Depends: R(>= 3.3.2)
Imports: glasso, QUIC, longitudinal, huge, MASS, mvtnorm, network, abind, stats
Author: Fentaw Abegaz and Ernst Wit
Maintainer: Fentaw Abegaz <f.abegaz.yazew@rug.nl>
Description: Computes sparse vector autoregressive coefficients and precision matrices for time series chain graphical models.
License: GPL (>= 3)
NeedsCompilation: yes
Packaged: 2020-05-23 18:13:13 UTC; Fentaw
Repository: CRAN
Date/Publication: 2020-05-24 15:40:06 UTC

More information about SparseTSCGM at CRAN
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New package ROpenCVLite with initial version 0.4.430
Package: ROpenCVLite
Type: Package
Title: Install 'OpenCV'
Version: 0.4.430
Authors@R: c( person("Simon", "Garnier", email = "garnier@njit.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3886-3974")), person("Muschelli", "John", email = "muschellij2@gmail.com", role = c("ctb")) )
Maintainer: Simon Garnier <garnier@njit.edu>
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/> is library of programming functions mainly aimed at real-time computer vision. This 'Lite' version contains the stable base version of 'OpenCV' and does not contain any of its externally contributed modules.
License: GPL-3
LazyData: TRUE
Imports: utils, pkgbuild, parallel
SystemRequirements: cmake, C++11
RoxygenNote: 7.1.0
Biarch: true
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://swarm-lab.github.io/ROpenCVLite/, https://github.com/swarm-lab/ROpenCVLite
BugReports: https://github.com/swarm-lab/ROpenCVLite/issues
NeedsCompilation: no
Packaged: 2020-05-24 12:41:00 UTC; simon
Author: Simon Garnier [aut, cre] (<https://orcid.org/0000-0002-3886-3974>), Muschelli John [ctb]
Repository: CRAN
Date/Publication: 2020-05-24 15:20:09 UTC

More information about ROpenCVLite at CRAN
Permanent link

Package REndo updated to version 2.4.0 with previous version 2.3.1 dated 2020-02-17

Title: Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches. The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized method of moment approach that deals with endogeneity in a multilevel setting. These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed. Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut], Markus Meierer [aut], Rene Algesheimer [aut], Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@business.uzh.ch>

Diff between REndo versions 2.3.1 dated 2020-02-17 and 2.4.0 dated 2020-05-24

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 REndo-2.4.0/REndo/DESCRIPTION                                        |   16 -
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 REndo-2.4.0/REndo/NAMESPACE                                          |    4 
 REndo-2.4.0/REndo/NEWS.md                                            |   53 ++-
 REndo-2.4.0/REndo/R/REndo-package.R                                  |    5 
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 REndo-2.4.0/REndo/R/f_checkinput_copulacorrection.R                  |    4 
 REndo-2.4.0/REndo/R/f_checkinput_helperfunctions.R                   |   50 ++-
 REndo-2.4.0/REndo/R/f_checkinput_highermomentsiv.R                   |    4 
 REndo-2.4.0/REndo/R/f_checkinput_multilevel.R                        |   13 
 REndo-2.4.0/REndo/R/f_copulacorrection_LL.R                          |    9 
 REndo-2.4.0/REndo/R/f_copulacorrection_optimizeLL.R                  |   28 +-
 REndo-2.4.0/REndo/R/f_formula_helpers.R                              |    3 
 REndo-2.4.0/REndo/R/f_heterrorsIV.R                                  |    7 
 REndo-2.4.0/REndo/R/f_heterrorsIV_IIV.R                              |   71 +++--
 REndo-2.4.0/REndo/R/f_highermomentsIV_IIV.R                          |   13 
 REndo-2.4.0/REndo/R/f_latentIV.R                                     |   19 +
 REndo-2.4.0/REndo/R/f_multilevelIV.R                                 |    2 
 REndo-2.4.0/REndo/R/f_multilevel_2levels.R                           |    2 
 REndo-2.4.0/REndo/R/f_multilevel_3levels.R                           |    7 
 REndo-2.4.0/REndo/R/f_multilevel_gmmestim.R                          |    3 
 REndo-2.4.0/REndo/R/f_multilevel_helpers.R                           |   11 
 REndo-2.4.0/REndo/README.md                                          |    7 
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 REndo-2.4.0/REndo/inst/doc/REndo-introduction.pdf                    |binary
 REndo-2.4.0/REndo/man/dataCopCont.Rd                                 |    6 
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 REndo-2.4.0/REndo/man/dataCopDisCont.Rd                              |    6 
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 REndo-2.4.0/REndo/man/dataMultilevelIV.Rd                            |    6 
 REndo-2.4.0/REndo/man/hetErrorsIV.Rd                                 |    6 
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 REndo-2.4.0/REndo/tests/testthat/test-inputchecks_copulacorrection.R |  136 ++++++++++
 REndo-2.4.0/REndo/tests/testthat/test-inputchecks_heterrorsIV.R      |   29 +-
 REndo-2.4.0/REndo/tests/testthat/test-inputchecks_highermomentsiv.R  |   24 -
 REndo-2.4.0/REndo/tests/testthat/test-inputchecks_latentIV.R         |    8 
 REndo-2.4.0/REndo/tests/testthat/test-inputchecks_multilevel.R       |   15 +
 REndo-2.4.0/REndo/tests/testthat/test-runability_copulacorrection.R  |   26 +
 REndo-2.4.0/REndo/tests/testthat/test-runability_heterrorsIV.R       |   48 ++-
 REndo-2.4.0/REndo/tests/testthat/test-runability_highermomentsIV.R   |   14 -
 REndo-2.4.0/REndo/tests/testthat/test-runability_latentIV.R          |    4 
 REndo-2.4.0/REndo/tests/testthat/test-runability_multilevel.R        |   49 ++-
 REndo-2.4.0/REndo/tests/testthat/test-s3methods_heterrorsiv.R        |    2 
 REndo-2.4.0/REndo/vignettes/REndo-introduction.Rmd                   |    8 
 52 files changed, 626 insertions(+), 269 deletions(-)

More information about REndo at CRAN
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Package GE updated to version 0.1.1 with previous version 0.1.0 dated 2020-05-08

Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press).
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>

Diff between GE versions 0.1.0 dated 2020-05-08 and 0.1.1 dated 2020-05-24

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 GE-0.1.1/GE/R/CARA.R                         |   24 -
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 GE-0.1.1/GE/R/apply_expand.grid.R            |   11 
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 GE-0.1.1/GE/R/ge_tidy.R                      |   14 
 GE-0.1.1/GE/R/gemInputOutputTable_2_8_4.R    |   18 
 GE-0.1.1/GE/R/gemInputOutputTable_5_4.R      |   14 
 GE-0.1.1/GE/R/gemInputOutputTable_7_4.R      |   14 
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 GE-0.1.1/GE/R/gemInputOutputTable_easy_5_4.R |   14 
 GE-0.1.1/GE/R/gemMoney_3_2.R                 |   96 ++---
 GE-0.1.1/GE/R/gemRobinson_3_2.R              |only
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 57 files changed, 1098 insertions(+), 1037 deletions(-)

More information about GE at CRAN
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Package GDINA updated to version 2.8.0 with previous version 2.7.9 dated 2020-03-01

Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling based on the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> and its extensions, including the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070> for polytomous responses, and the polytomous G-DINA model by Chen and de la Torre <DOI:10.1177/0146621613479818> for polytomous attributes. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided. For tutorials, please check Ma and de la Torre (2020) <DOI:10.18637/jss.v093.i14>, Ma and de la Torre (2019) <DOI:10.1111/emip.12262>, Ma (2019) <DOI:10.1007/978-3-030-05584-4_29> and de la Torre and Akbay (2019) <DOI:10.14689/ejer.2019.80.9>.
Author: Wenchao Ma [aut, cre, cph], Jimmy de la Torre [aut, cph], Miguel Sorrel [ctb], Zhehan Jiang [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>

Diff between GDINA versions 2.7.9 dated 2020-03-01 and 2.8.0 dated 2020-05-24

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 GDINA-2.8.0/GDINA/R/simGDINA.R              |    2 
 GDINA-2.8.0/GDINA/R/startGDINA.R            |   10 ++
 GDINA-2.8.0/GDINA/R/zzz.R                   |    8 -
 GDINA-2.8.0/GDINA/README.md                 |    8 +
 GDINA-2.8.0/GDINA/build/vignette.rds        |binary
 GDINA-2.8.0/GDINA/inst/CITATION             |   25 +++--
 GDINA-2.8.0/GDINA/inst/doc/GDINA.html       |   86 ++++++++++---------
 GDINA-2.8.0/GDINA/inst/shiny/rsconnect      |only
 GDINA-2.8.0/GDINA/man/CA.Rd                 |    5 +
 GDINA-2.8.0/GDINA/man/ClassRate.Rd          |    6 +
 GDINA-2.8.0/GDINA/man/DTM.Rd                |   11 ++
 GDINA-2.8.0/GDINA/man/GDINA-package.Rd      |   44 ++++++----
 GDINA-2.8.0/GDINA/man/GDINA.Rd              |   51 ++++++++---
 GDINA-2.8.0/GDINA/man/GMSCDM.Rd             |   13 ++
 GDINA-2.8.0/GDINA/man/MCmodel.Rd            |   13 ++
 GDINA-2.8.0/GDINA/man/Qval.Rd               |   10 --
 GDINA-2.8.0/GDINA/man/autoGDINA.Rd          |   21 +++-
 GDINA-2.8.0/GDINA/man/bootSE.Rd             |    8 +
 GDINA-2.8.0/GDINA/man/dif.Rd                |   16 ++-
 GDINA-2.8.0/GDINA/man/ecpe.Rd               |   11 ++
 GDINA-2.8.0/GDINA/man/frac20.Rd             |   11 ++
 GDINA-2.8.0/GDINA/man/itemfit.Rd            |   14 ++-
 GDINA-2.8.0/GDINA/man/itemparm.Rd           |   21 +++-
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 GDINA-2.8.0/GDINA/man/personparm.Rd         |    3 
 GDINA-2.8.0/GDINA/man/plot.GDINA.Rd         |   12 ++
 GDINA-2.8.0/GDINA/man/plot.Qval.Rd          |   14 ++-
 GDINA-2.8.0/GDINA/man/sim10GDINA.Rd         |   12 ++
 GDINA-2.8.0/GDINA/man/sim10MCDINA.Rd        |   12 ++
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More information about GDINA at CRAN
Permanent link

New package ess with initial version 1.0
Package: ess
Title: Efficient Stepwise Selection in Decomposable Models
Version: 1.0
Authors@R: person(given = "Mads", family = "Lindskou", role = c("aut", "cre"), email = "mads@math.aau.dk")
Description: An implementation of the ESS algorithm following Amol Deshpande, Minos Garofalakis, Michael I Jordan (2013) <arXiv:1301.2267>. The ESS algorithm is used for model selection in decomposable graphical models.
URL: https://github.com/mlindsk/ess
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: Rcpp, igraph, Matrix
LinkingTo: Rcpp
RoxygenNote: 7.1.0
Suggests: tinytest
BugReports: https://github.com/mlindsk/ess/issues
SystemRequirements: C++11
NeedsCompilation: yes
Packaged: 2020-05-23 06:50:04 UTC; mads
Author: Mads Lindskou [aut, cre]
Maintainer: Mads Lindskou <mads@math.aau.dk>
Repository: CRAN
Date/Publication: 2020-05-24 15:20:05 UTC

More information about ess at CRAN
Permanent link

New package EcoGenetics with initial version 1.2.1-6
Package: EcoGenetics
Type: Package
Title: Management and Exploratory Analysis of Spatial Data in Landscape Genetics
Version: 1.2.1-6
Date: 2020-05-24
Authors@R: c(person(given = "Leandro", family = "Roser", role = c("aut", "cre"), email = "learoser@gmail.com"), person(given = "Juan", family = "Vilardi", role = "aut"), person(given = "Beatriz", family = "Saidman", role = "aut"), person(given = "Laura", family = "Ferreyra", role = "aut"), person(given = "Thibaut", family = "Jombart", role = "ctb", comment = "author of included adegenet code"), person(given = "Winston", family = "Chang", role = "ctb", comment = "author of the multiplot function included under the name grf.multiplot"))
Maintainer: Leandro Roser <learoser@gmail.com>
Description: Management and exploratory analysis of spatial data in landscape genetics. Easy integration of information from multiple sources with "ecogen" objects.
License: GPL (>= 2)
URL: https://github.com/cran/EcoGenetics, https://leandroroser.github.io/EcoGenetics-Tutorial
LazyLoad: yes
Depends: R (>= 3.0), methods
Imports: edgebundleR, ggplot2, grid, htmlwidgets, igraph, jsonlite, magrittr, networkD3, party, pheatmap, plotly, raster, reshape2, rgdal, rkt, SoDA, sp, parallel, doParallel, foreach
Suggests: adegenet, testthat, covr, vegan, hierfstat
Collate: 'ZZZ.R' 'generics.R' 'auxiliar.R' 'int.genind.R' 'ecogen.1OF6.definition.R' 'ecogen.2OF6.constructor.R' 'ecogen.3OF6.basic.methods.R' 'ecogen.4OF6.brackets.R' 'ecogen.5OF6.get&set.R' 'ecogen.6OF6.converters.R' 'ecopop.1OF6.definition.R' 'ecopop.2OF6.constructor.R' 'ecopop.3OF6.basic.methods.R' 'ecopop.4OF6.brackets.R' 'ecopop.5OF6.get&set.R' 'ecopop.6OF6.converters.R' 'accessors.R' 'classes.R' 'control.R' 'deprecated.R' 'eco.formula.R' 'eco.NDVI.R' 'eco.NDVI.post.R' 'eco.alfreq.R' 'eco.association.R' 'eco.bearing.R' 'eco.cbind.R' 'eco.clear.R' 'eco.convert.R' 'eco.cormantel.R' 'eco.correlog.R' 'eco.detrend.R' 'eco.forestplot.R' 'eco.format.R' 'eco.gsa.R' 'eco.kin.loiselle.R' 'eco.lagweight.R' 'eco.lmtree.R' 'eco.lsa.R' 'eco.malecot.R' 'eco.mantel.R' 'eco.merge.R' 'eco.pairtest.R' 'eco.plotCorrelog.R' 'eco.plotGlobal.R' 'eco.plotLocal.R' 'eco.plotWeight.R' 'eco.post.geneland.R' 'eco.rankplot.R' 'eco.rasterplot.R' 'eco.rbind.R' 'eco.remove.R' 'eco.slide.con.R' 'eco.slide.matrix.R' 'eco.split.R' 'eco.subset.R' 'eco.theilsen.R' 'eco.variogram.R' 'eco.weight.R' 'int.break.R' 'int.convert.R' 'int.crosscor.R' 'int.geary.R' 'int.jackknife.R' 'int.joincount.R' 'int.kin.loiselle.R' 'int.mantel.R' 'int.moran.R' 'int.multitable.R' 'int.order.R' 'int.random.test.R' 'miscellaneous.R' 'fill_ecogen_with_pop.R' 'plot.generic.R' 'plot.methods.R' 'roxygen.auxiliar.R' 'show_summary.methods.R' 'eco.dom_af.R' 'eco.kin.hardy.R' 'eco.nei_dist.R'
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-24 06:01:19 UTC; Leandro
LazyData: true
Author: Leandro Roser [aut, cre], Juan Vilardi [aut], Beatriz Saidman [aut], Laura Ferreyra [aut], Thibaut Jombart [ctb] (author of included adegenet code), Winston Chang [ctb] (author of the multiplot function included under the name grf.multiplot)
Repository: CRAN
Date/Publication: 2020-05-24 15:20:17 UTC

More information about EcoGenetics at CRAN
Permanent link

New package bioacoustics with initial version 0.2.4
Package: bioacoustics
Type: Package
Title: Analyse Audio Recordings and Automatically Extract Animal Vocalizations
Version: 0.2.4
Authors@R: c(person("Jean", "Marchal", email = "jean.marchal@wavx.ca", role = c("aut","cre")), person("Francois", "Fabianek", email = "francois.fabianek@wavx.ca", role = "aut"), person("Christopher", "Scott", role = "aut"), person("Chris", "Corben", role = c("ctb", "cph"), email = "chris@hoarybat.com", comment = "Read ZC files, original C code"), person("David", "Riggs", role = c("ctb", "cph"), email = "driggs@myotisoft.com", comment = "Read GUANO metadata, original R code"), person("Peter", "Wilson", role = c("ctb", "cph"), email = "peter@peterwilson.id.au", comment = "Read ZC files, original R code"), person(family = "Wildlife Acoustics, inc.", role = c("ctb", "cph"), comment = "Read WAC files, original C code"), person(family = "WavX, inc.", role = "cph"))
Maintainer: Jean Marchal <jean.marchal@wavx.ca>
Description: Contains all the necessary tools to process audio recordings of various formats (e.g., WAV, WAC, MP3, ZC), filter noisy files, display audio signals, detect and extract automatically acoustic features for further analysis such as classification.
License: GPL-3
Encoding: UTF-8
LazyData: true
SystemRequirements: C++11, cmake, fftw3, GNU make, soxr-lsr
Depends: R (>= 3.3.0)
LinkingTo: Rcpp
Imports: htmltools, graphics, grDevices, methods, moments, Rcpp (>= 0.12.13), stringr, tools, tuneR (>= 1.3.0)
Suggests: knitr, rmarkdown
URL: https://github.com/wavx/bioacoustics/
BugReports: https://github.com/wavx/bioacoustics/issues/
NeedsCompilation: yes
RoxygenNote: 7.1.0
VignetteBuilder: knitr
Biarch: TRUE
Packaged: 2020-05-23 18:35:27 UTC; jean
Author: Jean Marchal [aut, cre], Francois Fabianek [aut], Christopher Scott [aut], Chris Corben [ctb, cph] (Read ZC files, original C code), David Riggs [ctb, cph] (Read GUANO metadata, original R code), Peter Wilson [ctb, cph] (Read ZC files, original R code), Wildlife Acoustics, inc. [ctb, cph] (Read WAC files, original C code), WavX, inc. [cph]
Repository: CRAN
Date/Publication: 2020-05-24 15:40:02 UTC

More information about bioacoustics at CRAN
Permanent link

New package aslib with initial version 0.1.1
Package: aslib
Title: Interface to the Algorithm Selection Benchmark Library
Description: Provides an interface to the algorithm selection benchmark library at <http://www.aslib.net> and the 'LLAMA' package (<https://cran.r-project.org/package=llama>) for building algorithm selection models; see Bischl et al. (2016) <doi:10.1016/j.artint.2016.04.003>.
Author: Bernd Bischl <bernd_bischl@gmx.net>, Lars Kotthoff <larsko@uwyo.edu>, Pascal Kerschke <kerschke@uni-muenster.de> [ctb]
Maintainer: Lars Kotthoff <larsko@uwyo.edu>
URL: https://github.com/coseal/aslib-r/
BugReports: https://github.com/coseal/aslib-r/issues
License: GPL-3
Imports: BatchExperiments, BatchJobs, BBmisc, checkmate, corrplot, ggplot2, llama, mlr, parallelMap, ParamHelpers, plyr, reshape2, RWeka, stringr, yaml
Suggests: testthat, rpart
LazyData: yes
ByteCompile: yes
Version: 0.1.1
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2020-05-22 19:44:22 UTC; larsko
Repository: CRAN
Date/Publication: 2020-05-24 15:50:02 UTC

More information about aslib at CRAN
Permanent link

Package outbreaker (with last version 1.1-8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-17 1.1-8
2015-12-07 1.1-7
2015-09-11 1.1-6

Permanent link
Package soundgen updated to version 1.7.0 with previous version 1.6.2 dated 2020-02-06

Title: Parametric Voice Synthesis
Description: Tools for sound synthesis and acoustic analysis. Performs parametric synthesis of sounds with harmonic and noise components such as animal vocalizations or human voice. Also includes tools for spectral analysis, pitch tracking, audio segmentation, self-similarity matrices, morphing, etc.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>

Diff between soundgen versions 1.6.2 dated 2020-02-06 and 1.7.0 dated 2020-05-24

 DESCRIPTION                               |   10 
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 NEWS                                      |   36 +
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 R/utilities_segment.R                     |    5 
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 R/vtl.R                                   |  203 +++---
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 vignettes/acoustic_analysis.Rmd           |  157 +++--
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 102 files changed, 3663 insertions(+), 3126 deletions(-)

More information about soundgen at CRAN
Permanent link

Package haven updated to version 2.3.0 with previous version 2.2.0 dated 2019-11-08

Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded 'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre], Evan Miller [aut, cph] (Author of included ReadStat code), RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between haven versions 2.2.0 dated 2019-11-08 and 2.3.0 dated 2020-05-24

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 src/readstat/CKHashTable.c                         |    3 
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 63 files changed, 2961 insertions(+), 2511 deletions(-)

More information about haven at CRAN
Permanent link

Package loon updated to version 1.3.0 with previous version 1.2.3 dated 2019-10-16

Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut], R. Wayne Oldford [aut, cre, ths], Zehao Xu [ctb], Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>

Diff between loon versions 1.2.3 dated 2019-10-16 and 1.3.0 dated 2020-05-24

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More information about loon at CRAN
Permanent link

Package listcomp updated to version 0.3.0 with previous version 0.2.0 dated 2020-05-08

Title: List Comprehensions
Description: An implementation of list comprehensions as purely syntactic sugar with a minor runtime overhead. It constructs nested for-loops and executes the byte-compiled loops to collect the results.
Author: Dirk Schumacher [aut, cre, cph]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>

Diff between listcomp versions 0.2.0 dated 2020-05-08 and 0.3.0 dated 2020-05-24

 DESCRIPTION                 |    8 -
 MD5                         |   14 +--
 NAMESPACE                   |    1 
 NEWS.md                     |    4 
 R/lst.R                     |  177 ++++++++++++++++++++++++++++++++------------
 README.md                   |   90 +++++++++++++++++-----
 man/gen_list.Rd             |   14 ++-
 tests/testthat/test-lists.R |   36 ++++++++
 8 files changed, 262 insertions(+), 82 deletions(-)

More information about listcomp at CRAN
Permanent link

Package d3heatmap (with last version 0.6.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-02-01 0.6.1.2
2016-02-23 0.6.1.1
2015-07-27 0.6.1
2015-06-23 0.6.0

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Package EcoGenetics (with last version 1.2.1-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-06-24 1.2.1-5
2018-01-13 1.2.1-4
2018-01-12 1.2.1-3
2017-11-21 1.2.1-2
2017-11-14 1.2.1-1
2017-03-03 1.2.1
2016-07-15 1.2.0-3
2015-07-11 1.2.0-2
2015-06-18 1.2.0-1
2015-05-11 1.2.0
2015-02-19 1.1.0
2015-01-30 1.0

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Package spef updated to version 1.0.9 with previous version 1.0.8 dated 2018-08-01

Title: Semiparametric Estimating Functions
Description: Functions for fitting semiparametric regression models for panel count survival data. An overview of the package can be found in Wang and Yan (2011) <doi:10.1016/j.cmpb.2010.10.005> and Chiou et al. (2018) <doi:10.1111/insr.12271>.
Author: Sy Han (Steven) Chiou [aut, cre], Xiaojing Wang [aut], Jun Yan [aut]
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>

Diff between spef versions 1.0.8 dated 2018-08-01 and 1.0.9 dated 2020-05-24

 DESCRIPTION           |    8 +++----
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Package sjPlot updated to version 2.8.4 with previous version 2.8.3 dated 2020-03-09

Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, principal component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models (including interaction terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>), Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>), Carsten Schwemmer [ctb], Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>), Amir Djalovski [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjPlot versions 2.8.3 dated 2020-03-09 and 2.8.4 dated 2020-05-24

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 94 files changed, 6851 insertions(+), 6646 deletions(-)

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Package seplyr updated to version 0.8.8 with previous version 0.8.7 dated 2020-05-13

Title: Improved Standard Evaluation Interfaces for Common Data Manipulation Tasks
Description: The 'seplyr' (standard evaluation plying) package supplies improved standard evaluation adapter methods for important common 'dplyr' data manipulation tasks. In addition the 'seplyr' package supplies several new "key operations bound together" methods. These include 'group_summarize()' (which combines grouping, arranging and calculation in an atomic unit), 'add_group_summaries()' (which joins grouped summaries into a 'data.frame' in a well documented manner), 'add_group_indices()' (which adds per-group identifiers to a 'data.frame' without depending on row-order), 'partition_mutate_qt()' (which optimizes mutate sequences), and 'if_else_device()' (which simulates per-row if-else blocks in expression sequences).
Author: John Mount [aut, cre], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

Diff between seplyr versions 0.8.7 dated 2020-05-13 and 0.8.8 dated 2020-05-24

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 inst/doc/named_map_builder.html |    4 ++--
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 8 files changed, 27 insertions(+), 22 deletions(-)

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Package CGE updated to version 0.3.3 with previous version 0.3.2 dated 2020-05-04

Title: Computing General Equilibrium
Description: Developing general equilibrium models, computing general equilibrium and simulating economic dynamics with structural dynamic models in LI (2019, ISBN: 9787521804225) "General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press". When developing complex general equilibrium models, GE package should be used in addition to this package.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>

Diff between CGE versions 0.3.2 dated 2020-05-04 and 0.3.3 dated 2020-05-24

 DESCRIPTION |   10 +++++-----
 MD5         |    8 ++++----
 NAMESPACE   |    2 +-
 R/sdm.R     |    9 +++++----
 man/sdm.Rd  |    8 ++++----
 5 files changed, 19 insertions(+), 18 deletions(-)

More information about CGE at CRAN
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