Mon, 25 May 2020

New package rkeops with initial version 1.4.1
Package: rkeops
Type: Package
Title: Kernel Operations on the GPU, with Autodiff, without Memory Overflows
Version: 1.4.1
Date: 2020-05-14
Authors@R: c( person(given="Benjamin", family="Charlier", comment="<http://imag.umontpellier.fr/~charlier/>", role="aut"), person(given="Jean", family="Feydy", comment="<https://www.math.ens.fr/~feydy/>", role="aut"), person(given="Joan A.", family="Glaunès", comment="<https://www.mi.parisdescartes.fr/~glaunes/>", role="aut"), person(given="Ghislain", family="Durif", comment="<https://gdurif.perso.math.cnrs.fr/>", email="gd.dev@libertymail.net", role=c("aut", "cre")), person(given="François-David", family="Collin", comment="Development-related consulting and support", role="ctb"), person(given="Daniel", family="Frey", comment="Author of the included C++ library 'sequences'", role="ctb"))
Description: The 'KeOps' library lets you compute generic reductions of very large arrays whose entries are given by a mathematical formula. It combines a tiled reduction scheme with an automatic differentiation engine, and can be used through 'R', 'Matlab', 'NumPy' or 'PyTorch' backends. It is perfectly suited to the computation of Kernel dot products and the associated gradients, even when the full kernel matrix does not fit into the GPU memory.
License: MIT + file LICENSE
Depends: R (>= 3.1.0)
LinkingTo: Rcpp (>= 1.0.1), RcppEigen (>= 0.3.3.5)
Imports: Rcpp (>= 1.0.1), openssl (>= 1.3), stringr (>= 1.4.0)
Suggests: testthat (>= 2.1.0), knitr, rmarkdown
OS_type: unix
SystemRequirements: C++11, cmake (>= 3.10), clang (optional), CUDA (optional but recommended)
URL: https://www.kernel-operations.io/, https://github.com/getkeops/keops/
BugReports: https://github.com/getkeops/keops/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-05-25 08:17:50 UTC; drg
Author: Benjamin Charlier [aut] (<http://imag.umontpellier.fr/~charlier/>), Jean Feydy [aut] (<https://www.math.ens.fr/~feydy/>), Joan A. Glaunès [aut] (<https://www.mi.parisdescartes.fr/~glaunes/>), Ghislain Durif [aut, cre] (<https://gdurif.perso.math.cnrs.fr/>), François-David Collin [ctb] (Development-related consulting and support), Daniel Frey [ctb] (Author of the included C++ library 'sequences')
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Repository: CRAN
Date/Publication: 2020-05-25 22:10:02 UTC

More information about rkeops at CRAN
Permanent link

New package AmpliconDuo with initial version 1.1.1
Package: AmpliconDuo
Type: Package
Title: Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
Authors@R: c(person(given = "Anja", family = "Lange", role = c("aut", "cre"), email = "anja.lange@uni-due.de"), person(given = "Daniel", family = "Hoffmann", role = "aut", email = "daniel.hoffmann@uni-due.de"))
Version: 1.1.1
Date: 2020-05-22
Author: Anja Lange [aut, cre], Daniel Hoffmann [aut]
Maintainer: Anja Lange <anja.lange@uni-due.de>
Depends: R (>= 2.10), stats, ggplot2, xtable
Description: Increasingly powerful techniques for high-throughput sequencing open the possibility to comprehensively characterize microbial communities, including rare species. However, a still unresolved issue are the substantial error rates in the experimental process generating these sequences. To overcome these limitations we propose an approach, where each sample is split and the same amplification and sequencing protocol is applied to both halves. This procedure should allow to detect likely PCR and sequencing artifacts, and true rare species by comparison of the results of both parts. The AmpliconDuo package, whereas amplicon duo from here on refers to the two amplicon data sets of a split sample, is intended to help interpret the obtained read frequency distribution across split samples, and to filter the false positive reads.
License: GPL (>= 3)
NeedsCompilation: no
Packaged: 2020-05-25 10:31:28 UTC; anja
Repository: CRAN
Date/Publication: 2020-05-25 22:20:02 UTC

More information about AmpliconDuo at CRAN
Permanent link

Package hesim updated to version 0.3.0 with previous version 0.2.3 dated 2020-03-17

Title: Health-Economic Simulation Modeling and Decision Analysis
Description: A modular and computationally efficient R package for parameterizing, simulating, and analyzing health-economic simulation models. The package supports cohort discrete time state transition models (Briggs et al. 1998) <doi:10.2165/00019053-199813040-00003>, N-state partitioned survival models (Glasziou et al. 1990) <doi:10.1002/sim.4780091106>, and individual-level continuous time state transition models (Siebert et al. 2012) <doi:10.1016/j.jval.2012.06.014>, encompassing both Markov (time-homogeneous and time-inhomogeneous) and semi-Markov processes. Decision uncertainty from a cost-effectiveness analysis is quantified with standard graphical and tabular summaries of a probabilistic sensitivity analysis (Claxton et al. 2005, Barton et al. 2008) <doi:10.1002/hec.985>, <doi:10.1111/j.1524-4733.2008.00358.x>. Use of C++ and data.table make individual-patient simulation, probabilistic sensitivity analysis, and incorporation of patient heterogeneity fast.
Author: Devin Incerti [aut, cre], Jeroen P. Jansen [aut], R Core Team [ctb] (hesim uses some slightly modified C functions from base R)
Maintainer: Devin Incerti <devin.incerti@gmail.com>

Diff between hesim versions 0.2.3 dated 2020-03-17 and 0.3.0 dated 2020-05-25

 hesim-0.2.3/hesim/R/input-data.R                           |only
 hesim-0.2.3/hesim/data/ctstm3_exdata.rda                   |only
 hesim-0.2.3/hesim/inst/doc/ctstm.R                         |only
 hesim-0.2.3/hesim/inst/doc/ctstm.Rmd                       |only
 hesim-0.2.3/hesim/inst/doc/ctstm.html                      |only
 hesim-0.2.3/hesim/inst/include/hesim/Rbase/sample.h        |only
 hesim-0.2.3/hesim/man/ctstm3_exdata.Rd                     |only
 hesim-0.2.3/hesim/man/params_mean.Rd                       |only
 hesim-0.2.3/hesim/tests/manual                             |only
 hesim-0.2.3/hesim/tests/testthat/test-input-data.R         |only
 hesim-0.2.3/hesim/vignettes/create-input-data.png          |only
 hesim-0.2.3/hesim/vignettes/ctstm.Rmd                      |only
 hesim-0.2.3/hesim/vignettes/econ-eval-process.png          |only
 hesim-0.2.3/hesim/vignettes/figures.pptx                   |only
 hesim-0.2.3/hesim/vignettes/input-data.png                 |only
 hesim-0.3.0/hesim/DESCRIPTION                              |   36 
 hesim-0.3.0/hesim/MD5                                      |  282 +-
 hesim-0.3.0/hesim/NAMESPACE                                |   29 
 hesim-0.3.0/hesim/R/RcppExports.R                          |   40 
 hesim-0.3.0/hesim/R/cea.R                                  |   72 
 hesim-0.3.0/hesim/R/ctstm.R                                |  432 +++-
 hesim-0.3.0/hesim/R/data.R                                 |   90 
 hesim-0.3.0/hesim/R/dtstm.R                                |only
 hesim-0.3.0/hesim/R/hesim.R                                |    7 
 hesim-0.3.0/hesim/R/hesim_data.R                           |only
 hesim-0.3.0/hesim/R/input_mats.R                           |only
 hesim-0.3.0/hesim/R/model-fits.R                           |   52 
 hesim-0.3.0/hesim/R/model_def.R                            |only
 hesim-0.3.0/hesim/R/outcomes.R                             |   91 
 hesim-0.3.0/hesim/R/params.R                               |  987 +++++++---
 hesim-0.3.0/hesim/R/psm.R                                  |  314 ++-
 hesim-0.3.0/hesim/R/rand.R                                 |   46 
 hesim-0.3.0/hesim/R/statevals.R                            |  588 ++++--
 hesim-0.3.0/hesim/R/utils.R                                |  143 +
 hesim-0.3.0/hesim/README.md                                |   11 
 hesim-0.3.0/hesim/build/vignette.rds                       |binary
 hesim-0.3.0/hesim/data/mstate3_exdata.rda                  |only
 hesim-0.3.0/hesim/data/multinom3_exdata.rda                |only
 hesim-0.3.0/hesim/inst/doc/expected-values.Rmd             |only
 hesim-0.3.0/hesim/inst/doc/expected-values.html            |only
 hesim-0.3.0/hesim/inst/doc/getting-started.R               |only
 hesim-0.3.0/hesim/inst/doc/getting-started.Rmd             |only
 hesim-0.3.0/hesim/inst/doc/getting-started.html            |only
 hesim-0.3.0/hesim/inst/doc/icea.R                          |   40 
 hesim-0.3.0/hesim/inst/doc/icea.Rmd                        |   16 
 hesim-0.3.0/hesim/inst/doc/icea.html                       |  902 ++++-----
 hesim-0.3.0/hesim/inst/doc/intro.R                         |  138 -
 hesim-0.3.0/hesim/inst/doc/intro.Rmd                       |  136 -
 hesim-0.3.0/hesim/inst/doc/intro.html                      | 1244 +++++++------
 hesim-0.3.0/hesim/inst/doc/markov-inhomogeneous.R          |only
 hesim-0.3.0/hesim/inst/doc/markov-inhomogeneous.Rmd        |only
 hesim-0.3.0/hesim/inst/doc/markov-inhomogeneous.html       |only
 hesim-0.3.0/hesim/inst/doc/mlogit.R                        |only
 hesim-0.3.0/hesim/inst/doc/mlogit.Rmd                      |only
 hesim-0.3.0/hesim/inst/doc/mlogit.html                     |only
 hesim-0.3.0/hesim/inst/doc/mstate.R                        |only
 hesim-0.3.0/hesim/inst/doc/mstate.Rmd                      |only
 hesim-0.3.0/hesim/inst/doc/mstate.html                     |only
 hesim-0.3.0/hesim/inst/doc/psm.R                           |   30 
 hesim-0.3.0/hesim/inst/doc/psm.Rmd                         |    8 
 hesim-0.3.0/hesim/inst/doc/psm.html                        |  828 +++-----
 hesim-0.3.0/hesim/inst/include/hesim/ctstm/ctstm.h         |  179 -
 hesim-0.3.0/hesim/inst/include/hesim/ctstm/indiv-ctstm.h   |   14 
 hesim-0.3.0/hesim/inst/include/hesim/dtstm.h               |only
 hesim-0.3.0/hesim/inst/include/hesim/math/composite.h      |   38 
 hesim-0.3.0/hesim/inst/include/hesim/psm.h                 |   16 
 hesim-0.3.0/hesim/inst/include/hesim/statevals.h           |  272 +-
 hesim-0.3.0/hesim/inst/include/hesim/statmods/obs_index.h  |  298 +--
 hesim-0.3.0/hesim/inst/include/hesim/statmods/params.h     |   49 
 hesim-0.3.0/hesim/inst/include/hesim/statmods/statmods.h   |  137 +
 hesim-0.3.0/hesim/inst/include/hesim/stats/distributions.h |    4 
 hesim-0.3.0/hesim/inst/include/hesim/stats/survfuns.h      |   62 
 hesim-0.3.0/hesim/inst/include/hesim/utils.h               |  149 +
 hesim-0.3.0/hesim/man/CohortDtstm.Rd                       |only
 hesim-0.3.0/hesim/man/CohortDtstmTrans.Rd                  |only
 hesim-0.3.0/hesim/man/CtstmTrans.Rd                        |only
 hesim-0.3.0/hesim/man/IndivCtstm.Rd                        |  416 ++--
 hesim-0.3.0/hesim/man/IndivCtstmTrans.Rd                   |  274 +-
 hesim-0.3.0/hesim/man/Psm.Rd                               |  305 ++-
 hesim-0.3.0/hesim/man/PsmCurves.Rd                         |  268 +-
 hesim-0.3.0/hesim/man/StateVals.Rd                         |  168 +
 hesim-0.3.0/hesim/man/absorbing.Rd                         |    2 
 hesim-0.3.0/hesim/man/ce.Rd                                |    6 
 hesim-0.3.0/hesim/man/check.Rd                             |   26 
 hesim-0.3.0/hesim/man/check_edata.Rd                       |    4 
 hesim-0.3.0/hesim/man/costs.Rd                             |only
 hesim-0.3.0/hesim/man/create_CohortDtstm.Rd                |only
 hesim-0.3.0/hesim/man/create_CohortDtstmTrans.Rd           |only
 hesim-0.3.0/hesim/man/create_IndivCtstmTrans.Rd            |    6 
 hesim-0.3.0/hesim/man/create_PsmCurves.Rd                  |    4 
 hesim-0.3.0/hesim/man/create_StateVals.Rd                  |   26 
 hesim-0.3.0/hesim/man/create_input_mats.Rd                 |   12 
 hesim-0.3.0/hesim/man/create_lines_dt.Rd                   |   10 
 hesim-0.3.0/hesim/man/create_params.Rd                     |   33 
 hesim-0.3.0/hesim/man/create_trans_dt.Rd                   |    6 
 hesim-0.3.0/hesim/man/define_model.Rd                      |only
 hesim-0.3.0/hesim/man/define_rng.Rd                        |only
 hesim-0.3.0/hesim/man/define_tparams.Rd                    |only
 hesim-0.3.0/hesim/man/expand.Rd                            |   11 
 hesim-0.3.0/hesim/man/expand.hesim_data.Rd                 |   38 
 hesim-0.3.0/hesim/man/fast_rgengamma.Rd                    |    8 
 hesim-0.3.0/hesim/man/flexsurvreg_list.Rd                  |    7 
 hesim-0.3.0/hesim/man/formula_list.Rd                      |    9 
 hesim-0.3.0/hesim/man/hesim.Rd                             |    4 
 hesim-0.3.0/hesim/man/hesim_data.Rd                        |   53 
 hesim-0.3.0/hesim/man/hesim_survdists.Rd                   |   42 
 hesim-0.3.0/hesim/man/icea.Rd                              |   62 
 hesim-0.3.0/hesim/man/icer_tbl.Rd                          |   20 
 hesim-0.3.0/hesim/man/id_attributes.Rd                     |only
 hesim-0.3.0/hesim/man/incr_effect.Rd                       |    6 
 hesim-0.3.0/hesim/man/input_mats.Rd                        |  109 -
 hesim-0.3.0/hesim/man/joined.Rd                            |    4 
 hesim-0.3.0/hesim/man/lm_list.Rd                           |    7 
 hesim-0.3.0/hesim/man/mom_beta.Rd                          |    4 
 hesim-0.3.0/hesim/man/mom_gamma.Rd                         |    6 
 hesim-0.3.0/hesim/man/mstate3_exdata.Rd                    |only
 hesim-0.3.0/hesim/man/multinom3_exdata.Rd                  |only
 hesim-0.3.0/hesim/man/multinom_list.Rd                     |only
 hesim-0.3.0/hesim/man/params.Rd                            |only
 hesim-0.3.0/hesim/man/params_joined_surv_list.Rd           |    2 
 hesim-0.3.0/hesim/man/params_lm.Rd                         |   15 
 hesim-0.3.0/hesim/man/params_lm_list.Rd                    |    4 
 hesim-0.3.0/hesim/man/params_mlogit.Rd                     |only
 hesim-0.3.0/hesim/man/params_mlogit_list.Rd                |only
 hesim-0.3.0/hesim/man/params_surv.Rd                       |   84 
 hesim-0.3.0/hesim/man/partsurvfit.Rd                       |    6 
 hesim-0.3.0/hesim/man/psm4_exdata.Rd                       |   24 
 hesim-0.3.0/hesim/man/qalys.Rd                             |only
 hesim-0.3.0/hesim/man/rcat.Rd                              |    8 
 hesim-0.3.0/hesim/man/rdirichlet_mat.Rd                    |   27 
 hesim-0.3.0/hesim/man/rng_distributions.Rd                 |only
 hesim-0.3.0/hesim/man/rpwexp.Rd                            |    8 
 hesim-0.3.0/hesim/man/sim_ev.Rd                            |only
 hesim-0.3.0/hesim/man/stateprobs.Rd                        |only
 hesim-0.3.0/hesim/man/stateval_tbl.Rd                      |   86 
 hesim-0.3.0/hesim/man/summarize_ce.Rd                      |   30 
 hesim-0.3.0/hesim/man/surv_quantile.Rd                     |    4 
 hesim-0.3.0/hesim/man/time_intervals.Rd                    |only
 hesim-0.3.0/hesim/man/tparams.Rd                           |only
 hesim-0.3.0/hesim/man/tparams_mean.Rd                      |only
 hesim-0.3.0/hesim/man/tparams_transprobs.Rd                |only
 hesim-0.3.0/hesim/man/tpmatrix.Rd                          |only
 hesim-0.3.0/hesim/man/tpmatrix_names.Rd                    |only
 hesim-0.3.0/hesim/man/uv_rng.Rd                            |only
 hesim-0.3.0/hesim/src/RcppExports.cpp                      |  126 -
 hesim-0.3.0/hesim/src/ctstm.cpp                            |   61 
 hesim-0.3.0/hesim/src/dtstm.cpp                            |only
 hesim-0.3.0/hesim/src/indiv-ctstm.cpp                      |  180 +
 hesim-0.3.0/hesim/src/psm.cpp                              |   46 
 hesim-0.3.0/hesim/src/statevals.cpp                        |   32 
 hesim-0.3.0/hesim/src/test-ctstm.cpp                       |    8 
 hesim-0.3.0/hesim/src/test-obs_index.cpp                   |   22 
 hesim-0.3.0/hesim/src/test-survfuns.cpp                    |    6 
 hesim-0.3.0/hesim/src/test-utils.cpp                       |    6 
 hesim-0.3.0/hesim/src/utils.cpp                            |    1 
 hesim-0.3.0/hesim/tests/testthat/test-cpp-obs_index.R      |  131 -
 hesim-0.3.0/hesim/tests/testthat/test-cpp-utils.R          |    7 
 hesim-0.3.0/hesim/tests/testthat/test-ctstm.R              |   81 
 hesim-0.3.0/hesim/tests/testthat/test-dtstm.R              |only
 hesim-0.3.0/hesim/tests/testthat/test-hesim_data.R         |only
 hesim-0.3.0/hesim/tests/testthat/test-input_mats.R         |only
 hesim-0.3.0/hesim/tests/testthat/test-model_def.R          |only
 hesim-0.3.0/hesim/tests/testthat/test-psm.R                |  120 -
 hesim-0.3.0/hesim/tests/testthat/test-rand.R               |   62 
 hesim-0.3.0/hesim/tests/testthat/test-statevals.R          |  395 ++--
 hesim-0.3.0/hesim/vignettes/expected-values.Rmd            |only
 hesim-0.3.0/hesim/vignettes/figures.gslides                |only
 hesim-0.3.0/hesim/vignettes/getting-started.Rmd            |only
 hesim-0.3.0/hesim/vignettes/getting-started.png            |only
 hesim-0.3.0/hesim/vignettes/icea.Rmd                       |   16 
 hesim-0.3.0/hesim/vignettes/illness-death.png              |only
 hesim-0.3.0/hesim/vignettes/intro.Rmd                      |  136 -
 hesim-0.3.0/hesim/vignettes/markov-inhomogeneous.Rmd       |only
 hesim-0.3.0/hesim/vignettes/markov-inhomogeneous.png       |only
 hesim-0.3.0/hesim/vignettes/mlogit.Rmd                     |only
 hesim-0.3.0/hesim/vignettes/mstate.Rmd                     |only
 hesim-0.3.0/hesim/vignettes/psm.Rmd                        |    8 
 177 files changed, 6786 insertions(+), 4692 deletions(-)

More information about hesim at CRAN
Permanent link

Package gscaLCA updated to version 0.0.3 with previous version 0.0.2 dated 2019-10-09

Title: Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Description: Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structured Component Analysis (GSCA). This is explained in Ryoo, Park, and Kim (2019) <doi:10.1007/s41237-019-00084-6>. It estimates the parameters of latent class prevalence and item response probability in LCA with a single line comment. It also provides graphs of item response probabilities. In addition, the package enables to estimate the relationship between the prevalence and covariates.
Author: Jihoon Ryoo [aut], Seohee Park [aut, cre], Seoungeun Kim [aut], heungsun Hwaung [aut]
Maintainer: Seohee Park <hee6904@gmail.com>

Diff between gscaLCA versions 0.0.2 dated 2019-10-09 and 0.0.3 dated 2020-05-25

 gscaLCA-0.0.2/gscaLCA/README.md               |only
 gscaLCA-0.0.3/gscaLCA/DESCRIPTION             |   18 -
 gscaLCA-0.0.3/gscaLCA/MD5                     |   37 +-
 gscaLCA-0.0.3/gscaLCA/NAMESPACE               |    3 
 gscaLCA-0.0.3/gscaLCA/R/AddHealth.R           |   21 -
 gscaLCA-0.0.3/gscaLCA/R/Boot_ft.R             |    6 
 gscaLCA-0.0.3/gscaLCA/R/EST_ft.R              |   32 +-
 gscaLCA-0.0.3/gscaLCA/R/RespItemProb.R        |    3 
 gscaLCA-0.0.3/gscaLCA/R/TALIS.R               |   12 
 gscaLCA-0.0.3/gscaLCA/R/al_gscaLCA.R          |  106 ++++++-
 gscaLCA-0.0.3/gscaLCA/R/gscaLCA.R             |  377 +++++++++++++++++++-------
 gscaLCA-0.0.3/gscaLCA/R/gscaLCR.R             |only
 gscaLCA-0.0.3/gscaLCA/R/print_graph_gscaLCA.R |    4 
 gscaLCA-0.0.3/gscaLCA/R/print_gscaLCA.R       |   73 ++++-
 gscaLCA-0.0.3/gscaLCA/R/summary.gscaLCA.R     |only
 gscaLCA-0.0.3/gscaLCA/R/test_binomial.R       |only
 gscaLCA-0.0.3/gscaLCA/R/test_multinomial.R    |only
 gscaLCA-0.0.3/gscaLCA/data/AddHealth.rda      |binary
 gscaLCA-0.0.3/gscaLCA/man/AddHealth.Rd        |   78 ++---
 gscaLCA-0.0.3/gscaLCA/man/TALIS.Rd            |   18 -
 gscaLCA-0.0.3/gscaLCA/man/gscaLCA.Rd          |   97 ++++--
 gscaLCA-0.0.3/gscaLCA/man/gscaLCR.Rd          |only
 gscaLCA-0.0.3/gscaLCA/man/summary.gscaLCA.Rd  |only
 23 files changed, 639 insertions(+), 246 deletions(-)

More information about gscaLCA at CRAN
Permanent link

Package bitmexr updated to version 0.3.0 with previous version 0.2.3 dated 2020-05-02

Title: R Client for BitMEX
Description: A client for cryptocurrency exchange BitMEX <https://www.bitmex.com/> including the ability to obtain historic trade data and place, edit and cancel orders. BitMEX's Testnet and live API are both supported.
Author: Harry Fisher [cre, aut, cph]
Maintainer: Harry Fisher <harryfisher21@gmail.com>

Diff between bitmexr versions 0.2.3 dated 2020-05-02 and 0.3.0 dated 2020-05-25

 bitmexr-0.2.3/bitmexr/vignettes/getting-started                                       |only
 bitmexr-0.3.0/bitmexr/DESCRIPTION                                                     |   16 
 bitmexr-0.3.0/bitmexr/LICENSE                                                         |    4 
 bitmexr-0.3.0/bitmexr/MD5                                                             |  172 
 bitmexr-0.3.0/bitmexr/NAMESPACE                                                       |   28 
 bitmexr-0.3.0/bitmexr/NEWS.md                                                         |   55 
 bitmexr-0.3.0/bitmexr/R/bitmexr.R                                                     |   60 
 bitmexr-0.3.0/bitmexr/R/bucket_trades.R                                               |  477 
 bitmexr-0.3.0/bitmexr/R/delete_orders.R                                               |only
 bitmexr-0.3.0/bitmexr/R/edit_order.R                                                  |only
 bitmexr-0.3.0/bitmexr/R/execute_order.R                                               |only
 bitmexr-0.3.0/bitmexr/R/general.R                                                     |only
 bitmexr-0.3.0/bitmexr/R/map_bucket_trades.R                                           |  506 
 bitmexr-0.3.0/bitmexr/R/map_trades.R                                                  |  457 
 bitmexr-0.3.0/bitmexr/R/trades.R                                                      |  465 
 bitmexr-0.3.0/bitmexr/R/utils.R                                                       |  213 
 bitmexr-0.3.0/bitmexr/README.md                                                       |  205 
 bitmexr-0.3.0/bitmexr/build/vignette.rds                                              |binary
 bitmexr-0.3.0/bitmexr/inst/doc/authentication.R                                       |only
 bitmexr-0.3.0/bitmexr/inst/doc/authentication.Rmd                                     |only
 bitmexr-0.3.0/bitmexr/inst/doc/authentication.html                                    |only
 bitmexr-0.3.0/bitmexr/inst/doc/getting-started.R                                      |   92 
 bitmexr-0.3.0/bitmexr/inst/doc/getting-started.Rmd                                    |  195 
 bitmexr-0.3.0/bitmexr/inst/doc/getting-started.html                                   |  701 
 bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.R                                       |only
 bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.Rmd                                     |only
 bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.html                                    |only
 bitmexr-0.3.0/bitmexr/inst/doc/trade-data.R                                           |only
 bitmexr-0.3.0/bitmexr/inst/doc/trade-data.Rmd                                         |only
 bitmexr-0.3.0/bitmexr/inst/doc/trade-data.html                                        |only
 bitmexr-0.3.0/bitmexr/man/available_symbols.Rd                                        |   40 
 bitmexr-0.3.0/bitmexr/man/bitmexr.Rd                                                  |    4 
 bitmexr-0.3.0/bitmexr/man/bucket_trades.Rd                                            |  182 
 bitmexr-0.3.0/bitmexr/man/cancel_all_orders.Rd                                        |only
 bitmexr-0.3.0/bitmexr/man/cancel_order.Rd                                             |only
 bitmexr-0.3.0/bitmexr/man/edit_order.Rd                                               |only
 bitmexr-0.3.0/bitmexr/man/get_bitmex.Rd                                               |only
 bitmexr-0.3.0/bitmexr/man/map_bucket_trades.Rd                                        |  183 
 bitmexr-0.3.0/bitmexr/man/map_trades.Rd                                               |  163 
 bitmexr-0.3.0/bitmexr/man/place_order.Rd                                              |only
 bitmexr-0.3.0/bitmexr/man/post_bitmex.Rd                                              |only
 bitmexr-0.3.0/bitmexr/man/tn_bucket_trades.Rd                                         |only
 bitmexr-0.3.0/bitmexr/man/tn_cancel_all_orders.Rd                                     |only
 bitmexr-0.3.0/bitmexr/man/tn_cancel_order.Rd                                          |only
 bitmexr-0.3.0/bitmexr/man/tn_edit_order.Rd                                            |only
 bitmexr-0.3.0/bitmexr/man/tn_get_bitmex.Rd                                            |only
 bitmexr-0.3.0/bitmexr/man/tn_map_bucket_trades.Rd                                     |only
 bitmexr-0.3.0/bitmexr/man/tn_map_trades.Rd                                            |only
 bitmexr-0.3.0/bitmexr/man/tn_place_order.Rd                                           |only
 bitmexr-0.3.0/bitmexr/man/tn_post_bitmex.Rd                                           |only
 bitmexr-0.3.0/bitmexr/man/tn_trades.Rd                                                |only
 bitmexr-0.3.0/bitmexr/man/trades.Rd                                                   |  171 
 bitmexr-0.3.0/bitmexr/man/valid_dates.Rd                                              |   50 
 bitmexr-0.3.0/bitmexr/tests/testthat.R                                                |   10 
 bitmexr-0.3.0/bitmexr/tests/testthat/helper.R                                         |    2 
 bitmexr-0.3.0/bitmexr/tests/testthat/test-bucket-trades.R                             |   96 
 bitmexr-0.3.0/bitmexr/tests/testthat/test-edit_order.R                                |only
 bitmexr-0.3.0/bitmexr/tests/testthat/test-execute_order.R                             |only
 bitmexr-0.3.0/bitmexr/tests/testthat/test-map-bucket-trades.R                         |   81 
 bitmexr-0.3.0/bitmexr/tests/testthat/test-map-trades.R                                |   66 
 bitmexr-0.3.0/bitmexr/tests/testthat/test-trades.R                                    |   76 
 bitmexr-0.3.0/bitmexr/tests/testthat/test-utils.R                                     |   50 
 bitmexr-0.3.0/bitmexr/tests/testthat/testnet.bitmex.com                               |only
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/bitcoincharts.json            |   64 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-1e0683.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-376c05.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-6103f3.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-6b5a6b.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-7610cc.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-7d6749.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-82a42d.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-999802.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9a74b7.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9ae38e.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9b518d.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-a0c058.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-e6f0f4.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-e75f9a.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-eecdfc.json          |24004 ++++----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-efc252.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-f6e75b.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-f91a9b.json          |   28 
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-564677.json |30004 +++++-----
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-5f8fac.json |19834 +++---
 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-7c9bba.json |30004 +++++-----
 bitmexr-0.3.0/bitmexr/vignettes/authentication.Rmd                                    |only
 bitmexr-0.3.0/bitmexr/vignettes/getting-started.Rmd                                   |  195 
 bitmexr-0.3.0/bitmexr/vignettes/placing-orders.Rmd                                    |only
 bitmexr-0.3.0/bitmexr/vignettes/trade-data                                            |only
 bitmexr-0.3.0/bitmexr/vignettes/trade-data.Rmd                                        |only
 90 files changed, 114836 insertions(+), 114445 deletions(-)

More information about bitmexr at CRAN
Permanent link

Package bibliometrix updated to version 3.0.1 with previous version 3.0.0 dated 2020-04-16

Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics. It provides various routines for importing bibliographic data from 'SCOPUS' (<http://scopus.com>), 'Clarivate Analytics Web of Science' (<http://www.webofknowledge.com/>), 'Digital Science Dimensions' (<https://www.dimensions.ai/>), 'Cochrane Library' (<http://www.cochranelibrary.com/>) and 'PubMed' (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut], Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>

Diff between bibliometrix versions 3.0.0 dated 2020-04-16 and 3.0.1 dated 2020-05-25

 bibliometrix-3.0.0/bibliometrix/inst/biblioshiny/rsconnect                  |only
 bibliometrix-3.0.1/bibliometrix/DESCRIPTION                                 |   10 
 bibliometrix-3.0.1/bibliometrix/MD5                                         |  101 
 bibliometrix-3.0.1/bibliometrix/NAMESPACE                                   |    3 
 bibliometrix-3.0.1/bibliometrix/NEWS                                        |   11 
 bibliometrix-3.0.1/bibliometrix/R/authorProdOverTime.R                      |  164 
 bibliometrix-3.0.1/bibliometrix/R/bib2df.R                                  |  359 
 bibliometrix-3.0.1/bibliometrix/R/biblioNetwork.R                           |  456 
 bibliometrix-3.0.1/bibliometrix/R/convert2df.R                              |  431 
 bibliometrix-3.0.1/bibliometrix/R/dominance.R                               |    2 
 bibliometrix-3.0.1/bibliometrix/R/histNetwork.R                             |  533 
 bibliometrix-3.0.1/bibliometrix/R/histPlot.R                                |    8 
 bibliometrix-3.0.1/bibliometrix/R/isi2df.R                                  |  130 
 bibliometrix-3.0.1/bibliometrix/R/metaTagExtraction.R                       |  944 -
 bibliometrix-3.0.1/bibliometrix/R/networkPlot.R                             |    7 
 bibliometrix-3.0.1/bibliometrix/R/pubmed2df.R                               |  142 
 bibliometrix-3.0.1/bibliometrix/R/tableTag.R                                |   79 
 bibliometrix-3.0.1/bibliometrix/R/zzz.R                                     |    1 
 bibliometrix-3.0.1/bibliometrix/build/partial.rdb                           |binary
 bibliometrix-3.0.1/bibliometrix/build/vignette.rds                          |binary
 bibliometrix-3.0.1/bibliometrix/data/biblio.rda                             |binary
 bibliometrix-3.0.1/bibliometrix/data/biblio_df.rda                          |binary
 bibliometrix-3.0.1/bibliometrix/data/bibtag.rda                             |binary
 bibliometrix-3.0.1/bibliometrix/data/countries.rda                          |binary
 bibliometrix-3.0.1/bibliometrix/data/datalist                               |   22 
 bibliometrix-3.0.1/bibliometrix/data/garfield.rda                           |binary
 bibliometrix-3.0.1/bibliometrix/data/isiCollection.rda                      |binary
 bibliometrix-3.0.1/bibliometrix/data/management.rda                         |binary
 bibliometrix-3.0.1/bibliometrix/data/scientometrics.rda                     |binary
 bibliometrix-3.0.1/bibliometrix/data/scientometrics_text.rda                |binary
 bibliometrix-3.0.1/bibliometrix/data/scopusCollection.rda                   |binary
 bibliometrix-3.0.1/bibliometrix/data/stopwords.rda                          |binary
 bibliometrix-3.0.1/bibliometrix/inst/biblioshiny/server.R                   | 7291 +++++-----
 bibliometrix-3.0.1/bibliometrix/inst/biblioshiny/ui.R                       |   12 
 bibliometrix-3.0.1/bibliometrix/inst/doc/Data-Importing-and-Converting.R    |  150 
 bibliometrix-3.0.1/bibliometrix/inst/doc/Data-Importing-and-Converting.html | 1606 +-
 bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.R            |  404 
 bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.Rmd          |    2 
 bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.html         | 2799 +--
 bibliometrix-3.0.1/bibliometrix/man/biblio.Rd                               |    6 
 bibliometrix-3.0.1/bibliometrix/man/biblio_df.Rd                            |    6 
 bibliometrix-3.0.1/bibliometrix/man/bibliometrix-package.Rd                 |   29 
 bibliometrix-3.0.1/bibliometrix/man/bibtag.Rd                               |    6 
 bibliometrix-3.0.1/bibliometrix/man/countries.Rd                            |    6 
 bibliometrix-3.0.1/bibliometrix/man/garfield.Rd                             |    6 
 bibliometrix-3.0.1/bibliometrix/man/isiCollection.Rd                        |    6 
 bibliometrix-3.0.1/bibliometrix/man/management.Rd                           |    6 
 bibliometrix-3.0.1/bibliometrix/man/scientometrics.Rd                       |    6 
 bibliometrix-3.0.1/bibliometrix/man/scientometrics_text.Rd                  |    6 
 bibliometrix-3.0.1/bibliometrix/man/scopusCollection.Rd                     |    6 
 bibliometrix-3.0.1/bibliometrix/man/stopwords.Rd                            |    4 
 bibliometrix-3.0.1/bibliometrix/vignettes/bibliometrix-vignette.Rmd         |    2 
 52 files changed, 7933 insertions(+), 7829 deletions(-)

More information about bibliometrix at CRAN
Permanent link

Package multicross updated to version 2.1.0 with previous version 2.0.0 dated 2019-09-23

Title: A Graph-Based Test for Comparing Multivariate Distributions in the Multi Sample Framework
Description: We introduce a nonparametric, graphical test based on optimal matching for assessing whether multiple unknown multivariate probability distributions are equal. This method is consistent, and does not make any distributional assumptions on the data. Our procedure combines data that belong to different classes or groups to create a graph on the pooled data, and then utilizes the number of edges connecting data points from different classes to examine equality of distributions among the classes. The functions available through this package implement the work described here: <arXiv:1906.04776>.
Author: Somabha Mukherjee <somabha@wharton.upenn.edu> Divyansh Agarwal <divyansh.agarwal@pennmedicine.upenn.edu> Bhaswar Bhattacharya <bhaswar@wharton.upenn.edu> Nancy R. Zhang <nzh@wharton.upenn.edu>
Maintainer: Divyansh Agarwal <divyansh.agarwal@pennmedicine.upenn.edu>

Diff between multicross versions 2.0.0 dated 2019-09-23 and 2.1.0 dated 2020-05-25

 multicross-2.0.0/multicross/man/matchpar.Rd |only
 multicross-2.0.0/multicross/man/scPath.Rd   |only
 multicross-2.1.0/multicross/DESCRIPTION     |   13 ++--
 multicross-2.1.0/multicross/MD5             |    8 +--
 multicross-2.1.0/multicross/NAMESPACE       |    8 ---
 multicross-2.1.0/multicross/R/multicross.R  |   73 ----------------------------
 6 files changed, 9 insertions(+), 93 deletions(-)

More information about multicross at CRAN
Permanent link

New package tidylo with initial version 0.1.0
Type: Package
Package: tidylo
Title: Weighted Tidy Log Odds Ratio
Version: 0.1.0
Authors@R: c(person(given = "Tyler", family = "Schnoebelen", role = "aut", email = "tjs1976@gmail.com"), person(given = "Julia", family = "Silge", role = c("aut", "cre", "cph"), email = "julia.silge@gmail.com", comment = c(ORCID = "0000-0002-3671-836X")), person(given = "Alex", family = "Hayes", role = "aut", email = "alexpghayes@gmail.com", comment = c(ORCID = "0000-0002-4985-5160")))
Description: How can we measure how the usage or frequency of some feature, such as words, differs across some group or set, such as documents? One option is to use the log odds ratio, but the log odds ratio alone does not account for sampling variability; we haven't counted every feature the same number of times so how do we know which differences are meaningful? Enter the weighted log odds, which 'tidylo' provides an implementation for, using tidy data principles. In particular, here we use the method outlined in Monroe, Colaresi, and Quinn (2008) <doi:10.1093/pan/mpn018> to weight the log odds ratio by a prior. By default, the prior is estimated from the data itself, an empirical Bayes approach, but an uninformative prior is also available.
License: MIT + file LICENSE
URL: http://github.com/juliasilge/tidylo
BugReports: http://github.com/juliasilge/tidylo/issues
Imports: dplyr, rlang
Suggests: covr, ggplot2, janeaustenr, knitr, rmarkdown, stringr, testthat (>= 2.1.0), tidytext
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-16 16:40:27 UTC; juliasilge
Author: Tyler Schnoebelen [aut], Julia Silge [aut, cre, cph] (<https://orcid.org/0000-0002-3671-836X>), Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>)
Maintainer: Julia Silge <julia.silge@gmail.com>
Repository: CRAN
Date/Publication: 2020-05-25 19:10:03 UTC

More information about tidylo at CRAN
Permanent link

New package stratallo with initial version 0.1.0
Package: stratallo
Title: Optimum Sample Allocation in Stratified Random Sampling Scheme
Version: 0.1.0
Authors@R: c( person("Wojciech", "Wojciak", email = "wojciech.wojciak@gmail.com", role = c("aut", "cre")), person("Jacek", "Wesolowski", email = "j.wesolowski@mini.pw.edu.pl", role = "sad"), person("Robert", "Wieczorkowski", email = "R.Wieczorkowski@stat.gov.pl", role = "ctb"))
Description: Functions in this package provide solution to classical problem in survey methodology - an optimum sample allocation in stratified sampling scheme with simple random sampling without replacement design in each stratum. In this context, the optimal allocation is in the classical Tschuprow-Neyman's sense, and it satisfies additional upper bounds restrictions imposed on sample sizes in strata. There are four different algorithms available to use, and one of them is Neyman optimal allocation applied in a recursive way. All the algorithms are described in detail in "Wojciak W. Optimal allocation in stratified sampling schemes. Master's diploma thesis, Warsaw University of Technology. 2019", available on-line at <http://home.elka.pw.edu.pl/~wwojciak/msc_optimal_allocation.pdf>.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-16 18:22:10 UTC; user1
Author: Wojciech Wojciak [aut, cre], Jacek Wesolowski [sad], Robert Wieczorkowski [ctb]
Maintainer: Wojciech Wojciak <wojciech.wojciak@gmail.com>
Repository: CRAN
Date/Publication: 2020-05-25 19:10:06 UTC

More information about stratallo at CRAN
Permanent link

Package scoper updated to version 1.0.1 with previous version 1.0.0 dated 2020-05-16

Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) <doi: 10.1093/bioinformatics/bty235>. Nouri N and Kleinstein SH (2019) <doi: 10.1101/788620>. Gupta NT, et al. (2017) <doi: 10.4049/jimmunol.1601850>.
Author: Nima Nouri [aut], Edel Aron [ctb], Jason Vander Heiden [aut, cre], Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@gmail.com>

Diff between scoper versions 1.0.0 dated 2020-05-16 and 1.0.1 dated 2020-05-25

 DESCRIPTION                  |   14 +++++++-------
 MD5                          |   12 ++++++------
 NAMESPACE                    |   25 ++++---------------------
 NEWS.md                      |    7 +++++++
 R/Functions.R                |   19 +++++++++++++------
 R/Scoper.R                   |   26 ++++++++++++--------------
 inst/doc/Scoper-Vignette.pdf |binary
 7 files changed, 49 insertions(+), 54 deletions(-)

More information about scoper at CRAN
Permanent link

Package ordinalNet updated to version 2.8 with previous version 2.7 dated 2020-01-10

Title: Penalized Ordinal Regression
Description: Fits ordinal regression models with elastic net penalty. Supported model families include cumulative probability, stopping ratio, continuation ratio, and adjacent category. These families are a subset of vector glm's which belong to a model class we call the elementwise link multinomial-ordinal (ELMO) class. Each family in this class links a vector of covariates to a vector of class probabilities. Each of these families has a parallel form, which is appropriate for ordinal response data, as well as a nonparallel form that is appropriate for an unordered categorical response, or as a more flexible model for ordinal data. The parallel model has a single set of coefficients, whereas the nonparallel model has a set of coefficients for each response category except the baseline category. It is also possible to fit a model with both parallel and nonparallel terms, which we call the semi-parallel model. The semi-parallel model has the flexibility of the nonparallel model, but the elastic net penalty shrinks it toward the parallel model. For details, refer to Wurm, Hanlon, and Rathouz (2017) <arXiv:1706.05003>.
Author: Michael Wurm [aut, cre], Paul Rathouz [aut], Bret Hanlon [aut]
Maintainer: Michael Wurm <wurm@uwalumni.com>

Diff between ordinalNet versions 2.7 dated 2020-01-10 and 2.8 dated 2020-05-25

 DESCRIPTION                      |    8 ++++----
 MD5                              |    4 ++--
 tests/testthat/test-ordinalNet.R |    8 ++++----
 3 files changed, 10 insertions(+), 10 deletions(-)

More information about ordinalNet at CRAN
Permanent link

Package yhat updated to version 2.0-1 with previous version 2.0-0 dated 2013-09-15

Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods to interpret multiple linear regression and canonical correlation results including beta weights,structure coefficients, validity coefficients, product measures, relative weights, all-possible-subsets regression, dominance analysis, commonality analysis, and adjusted effect sizes.
Author: Kim Nimon [aut, cre], Fred Oswald [aut], J. Klye Roberts [aut]
Maintainer: Kim Nimon <kim.nimon@gmail.com>

Diff between yhat versions 2.0-0 dated 2013-09-15 and 2.0-1 dated 2020-05-25

 DESCRIPTION                    |   18 +++++++++++-------
 MD5                            |   36 ++++++++++++++++++------------------
 NAMESPACE                      |    3 +++
 R/booteval.yhat.r              |   13 ++++++++-----
 R/canonCommonality.R           |   41 +++++++++++++++++++++++------------------
 man/aps.Rd                     |    6 +++---
 man/boot.yhat.Rd               |    7 ++++---
 man/booteval.yhat.rd           |    7 ++++---
 man/calc.yhat.rd               |    6 ++++--
 man/canonCommonality.Rd        |   10 +++++-----
 man/commonality.rd             |    5 +++--
 man/commonalityCoefficients.Rd |    6 +++---
 man/dombin.rd                  |    5 +++--
 man/dominance.rd               |    5 +++--
 man/effect.size.Rd             |    8 ++++----
 man/plotCI.yhat.rd             |    7 ++++---
 man/regr.Rd                    |    8 ++++----
 man/rlw.rd                     |    6 ++++--
 man/yhat-package.Rd            |    4 ++--
 19 files changed, 113 insertions(+), 88 deletions(-)

More information about yhat at CRAN
Permanent link

Package umx updated to version 4.0.0 with previous version 3.0.6 dated 2020-02-06

Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models. See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Author: Timothy C. Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>), Gillespie Nathan [ctb], Brenton Wiernik [ctb], Joshua N. Pritikin [ctb], Michael C. Neale [ctb], Hermine Maes [ctb]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>

Diff between umx versions 3.0.6 dated 2020-02-06 and 4.0.0 dated 2020-05-25

 umx-3.0.6/umx/R/umxIPnew.R                               |only
 umx-3.0.6/umx/R/umx_build_umxACEcov_fixed.R              |only
 umx-3.0.6/umx/R/umx_nice_data.R                          |only
 umx-3.0.6/umx/man/figures/measurement_invariance.graffle |only
 umx-3.0.6/umx/man/umxACE_cov_fixed.Rd                    |only
 umx-3.0.6/umx/man/umx_object_as_str.Rd                   |only
 umx-3.0.6/umx/man/xmu_assemble_twin_supermodel.Rd        |only
 umx-3.0.6/umx/man/xmu_make_top_twin.Rd                   |only
 umx-3.0.6/umx/tests                                      |only
 umx-4.0.0/umx/DESCRIPTION                                |   16 
 umx-4.0.0/umx/MD5                                        |  600 ++---
 umx-4.0.0/umx/NAMESPACE                                  |   22 
 umx-4.0.0/umx/NEWS.md                                    |  103 +
 umx-4.0.0/umx/R/build_run_modify.R                       | 1473 +++++++++-----
 umx-4.0.0/umx/R/datasets.R                               |  252 +-
 umx-4.0.0/umx/R/deprecated.R                             |   62 
 umx-4.0.0/umx/R/fit_and_reporting.R                      | 1017 +++++-----
 umx-4.0.0/umx/R/lavanify2ram.R                           |    4 
 umx-4.0.0/umx/R/misc_and_utility.R                       | 1519 +++++++++------
 umx-4.0.0/umx/R/tmx.R                                    |   20 
 umx-4.0.0/umx/R/umxDoC.R                                 |  644 +++---
 umx-4.0.0/umx/R/umxDoCbyPath.R                           |only
 umx-4.0.0/umx/R/umxPower.R                               |   32 
 umx-4.0.0/umx/R/umx_build_high_level_models.R            |    2 
 umx-4.0.0/umx/R/umx_build_polychoricMatrix3.R            |    2 
 umx-4.0.0/umx/R/umx_build_umxACEv.R                      |  261 +-
 umx-4.0.0/umx/R/umx_build_umxGxEbiv.R                    |   93 
 umx-4.0.0/umx/R/umx_build_umxSexLim.R                    |   12 
 umx-4.0.0/umx/R/umx_build_umxSimplex.R                   |    6 
 umx-4.0.0/umx/R/umx_fit_umxFitIndices.R                  |  664 +++++-
 umx-4.0.0/umx/R/xmu.R                                    |  428 +++-
 umx-4.0.0/umx/R/xmu_make_top_twin_models.R               |  774 +++++--
 umx-4.0.0/umx/README.md                                  |   29 
 umx-4.0.0/umx/data/docData.rda                           |only
 umx-4.0.0/umx/inst/WORDLIST                              |   63 
 umx-4.0.0/umx/man/Fischbein_wt.Rd                        |   16 
 umx-4.0.0/umx/man/FishersMethod.Rd                       |   32 
 umx-4.0.0/umx/man/GFF.Rd                                 |  118 -
 umx-4.0.0/umx/man/RMSEA.MxModel.Rd                       |   27 
 umx-4.0.0/umx/man/RMSEA.Rd                               |   27 
 umx-4.0.0/umx/man/RMSEA.summary.mxmodel.Rd               |   27 
 umx-4.0.0/umx/man/SE_from_p.Rd                           |   23 
 umx-4.0.0/umx/man/deg2rad.Rd                             |    3 
 umx-4.0.0/umx/man/dl_from_dropbox.Rd                     |   12 
 umx-4.0.0/umx/man/docData.Rd                             |only
 umx-4.0.0/umx/man/extractAIC.MxModel.Rd                  |   26 
 umx-4.0.0/umx/man/figures/GxE.pdf                        |binary
 umx-4.0.0/umx/man/figures/GxE.png                        |binary
 umx-4.0.0/umx/man/figures/GxEbiv.pdf                     |binary
 umx-4.0.0/umx/man/figures/GxEbiv.png                     |binary
 umx-4.0.0/umx/man/figures/TSLS.pdf                       |binary
 umx-4.0.0/umx/man/figures/TSLS.png                       |binary
 umx-4.0.0/umx/man/figures/umx_help_figures.graffle       |binary
 umx-4.0.0/umx/man/install.OpenMx.Rd                      |   22 
 umx-4.0.0/umx/man/iqdat.Rd                               |   24 
 umx-4.0.0/umx/man/loadings.MxModel.Rd                    |   16 
 umx-4.0.0/umx/man/loadings.Rd                            |   27 
 umx-4.0.0/umx/man/oddsratio.Rd                           |   23 
 umx-4.0.0/umx/man/plot.MxLISRELModel.Rd                  |   22 
 umx-4.0.0/umx/man/plot.MxModel.Rd                        |   26 
 umx-4.0.0/umx/man/plot.MxModelTwinMaker.Rd               |only
 umx-4.0.0/umx/man/power.ACE.test.Rd                      |   44 
 umx-4.0.0/umx/man/qm.Rd                                  |   22 
 umx-4.0.0/umx/man/rad2deg.Rd                             |    3 
 umx-4.0.0/umx/man/reliability.Rd                         |   23 
 umx-4.0.0/umx/man/residuals.MxModel.Rd                   |   27 
 umx-4.0.0/umx/man/tmx_genotypic_effect.Rd                |    8 
 umx-4.0.0/umx/man/tmx_is.identified.Rd                   |    5 
 umx-4.0.0/umx/man/tmx_show.Rd                            |   12 
 umx-4.0.0/umx/man/umx-deprecated.Rd                      |   60 
 umx-4.0.0/umx/man/umx.Rd                                 |  517 ++---
 umx-4.0.0/umx/man/umxACE.Rd                              |  128 -
 umx-4.0.0/umx/man/umxACEcov.Rd                           |   38 
 umx-4.0.0/umx/man/umxACEv.Rd                             |   27 
 umx-4.0.0/umx/man/umxAPA.Rd                              |   34 
 umx-4.0.0/umx/man/umxAlgebra.Rd                          |   36 
 umx-4.0.0/umx/man/umxBrownie.Rd                          |   22 
 umx-4.0.0/umx/man/umxCI.Rd                               |   28 
 umx-4.0.0/umx/man/umxCI_boot.Rd                          |   27 
 umx-4.0.0/umx/man/umxCP.Rd                               |   57 
 umx-4.0.0/umx/man/umxCompare.Rd                          |   28 
 umx-4.0.0/umx/man/umxConfint.Rd                          |   36 
 umx-4.0.0/umx/man/umxCov2cor.Rd                          |   23 
 umx-4.0.0/umx/man/umxDiagnose.Rd                         |    7 
 umx-4.0.0/umx/man/umxDoC.Rd                              |   94 
 umx-4.0.0/umx/man/umxDoCp.Rd                             |only
 umx-4.0.0/umx/man/umxEFA.Rd                              |    5 
 umx-4.0.0/umx/man/umxEquate.Rd                           |   12 
 umx-4.0.0/umx/man/umxExpCov.Rd                           |   28 
 umx-4.0.0/umx/man/umxExpMeans.Rd                         |   27 
 umx-4.0.0/umx/man/umxFactor.Rd                           |   34 
 umx-4.0.0/umx/man/umxFactorScores.Rd                     |   15 
 umx-4.0.0/umx/man/umxFitIndices.Rd                       |  104 -
 umx-4.0.0/umx/man/umxFixAll.Rd                           |   12 
 umx-4.0.0/umx/man/umxGetParameters.Rd                    |   15 
 umx-4.0.0/umx/man/umxGxE.Rd                              |   47 
 umx-4.0.0/umx/man/umxGxE_window.Rd                       |   41 
 umx-4.0.0/umx/man/umxGxEbiv.Rd                           |   27 
 umx-4.0.0/umx/man/umxHetCor.Rd                           |   57 
 umx-4.0.0/umx/man/umxIP.Rd                               |   38 
 umx-4.0.0/umx/man/umxJiggle.Rd                           |    8 
 umx-4.0.0/umx/man/umxLabel.Rd                            |    8 
 umx-4.0.0/umx/man/umxLav2RAM.Rd                          |   22 
 umx-4.0.0/umx/man/umxMI.Rd                               |   15 
 umx-4.0.0/umx/man/umxMatrix.Rd                           |   14 
 umx-4.0.0/umx/man/umxMendelianRandomization.Rd           |    5 
 umx-4.0.0/umx/man/umxModel.Rd                            |  125 -
 umx-4.0.0/umx/man/umxModify.Rd                           |   31 
 umx-4.0.0/umx/man/umxParameters.Rd                       |   28 
 umx-4.0.0/umx/man/umxPath.Rd                             |   67 
 umx-4.0.0/umx/man/umxPlotACE.Rd                          |   27 
 umx-4.0.0/umx/man/umxPlotACEcov.Rd                       |   23 
 umx-4.0.0/umx/man/umxPlotACEv.Rd                         |   50 
 umx-4.0.0/umx/man/umxPlotCP.Rd                           |   51 
 umx-4.0.0/umx/man/umxPlotDoC.Rd                          |   98 
 umx-4.0.0/umx/man/umxPlotGxE.Rd                          |   23 
 umx-4.0.0/umx/man/umxPlotGxEbiv.Rd                       |   19 
 umx-4.0.0/umx/man/umxPlotIP.Rd                           |   20 
 umx-4.0.0/umx/man/umxPlotSexLim.Rd                       |   19 
 umx-4.0.0/umx/man/umxPlotSimplex.Rd                      |   19 
 umx-4.0.0/umx/man/umxPower.Rd                            |    5 
 umx-4.0.0/umx/man/umxRAM.Rd                              |   52 
 umx-4.0.0/umx/man/umxRAM2Lav.Rd                          |   22 
 umx-4.0.0/umx/man/umxReduce.Rd                           |   47 
 umx-4.0.0/umx/man/umxReduceACE.Rd                        |   34 
 umx-4.0.0/umx/man/umxReduceGxE.Rd                        |   31 
 umx-4.0.0/umx/man/umxRenameMatrix.Rd                     |only
 umx-4.0.0/umx/man/umxRotate.MxModelCP.Rd                 |   24 
 umx-4.0.0/umx/man/umxRotate.Rd                           |   28 
 umx-4.0.0/umx/man/umxRun.Rd                              |   19 
 umx-4.0.0/umx/man/umxSetParameters.Rd                    |   12 
 umx-4.0.0/umx/man/umxSexLim.Rd                           |   29 
 umx-4.0.0/umx/man/umxSimplex.Rd                          |   29 
 umx-4.0.0/umx/man/umxSummarizeTwinData.Rd                |   46 
 umx-4.0.0/umx/man/umxSummary.MxModel.Rd                  |   84 
 umx-4.0.0/umx/man/umxSummary.Rd                          |   14 
 umx-4.0.0/umx/man/umxSummaryACE.Rd                       |   30 
 umx-4.0.0/umx/man/umxSummaryACEcov.Rd                    |   43 
 umx-4.0.0/umx/man/umxSummaryACEv.Rd                      |   30 
 umx-4.0.0/umx/man/umxSummaryCP.Rd                        |   39 
 umx-4.0.0/umx/man/umxSummaryDoC.Rd                       |   84 
 umx-4.0.0/umx/man/umxSummaryGxE.Rd                       |   30 
 umx-4.0.0/umx/man/umxSummaryGxEbiv.Rd                    |   41 
 umx-4.0.0/umx/man/umxSummaryIP.Rd                        |   40 
 umx-4.0.0/umx/man/umxSummarySexLim.Rd                    |   30 
 umx-4.0.0/umx/man/umxSummarySimplex.Rd                   |   30 
 umx-4.0.0/umx/man/umxSuperModel.Rd                       |   26 
 umx-4.0.0/umx/man/umxThresholdMatrix.Rd                  |   76 
 umx-4.0.0/umx/man/umxTwinMaker.Rd                        |only
 umx-4.0.0/umx/man/umxUnexplainedCausalNexus.Rd           |   11 
 umx-4.0.0/umx/man/umxValues.Rd                           |    8 
 umx-4.0.0/umx/man/umxVersion.Rd                          |   22 
 umx-4.0.0/umx/man/umxWeightedAIC.Rd                      |   23 
 umx-4.0.0/umx/man/umx_APA_pval.Rd                        |  125 -
 umx-4.0.0/umx/man/umx_aggregate.Rd                       |   16 
 umx-4.0.0/umx/man/umx_apply.Rd                           |   29 
 umx-4.0.0/umx/man/umx_array_shift.Rd                     |   22 
 umx-4.0.0/umx/man/umx_as_numeric.Rd                      |   34 
 umx-4.0.0/umx/man/umx_check.Rd                           |   44 
 umx-4.0.0/umx/man/umx_check_OS.Rd                        |   26 
 umx-4.0.0/umx/man/umx_check_model.Rd                     |   26 
 umx-4.0.0/umx/man/umx_check_names.Rd                     |   55 
 umx-4.0.0/umx/man/umx_check_parallel.Rd                  |   30 
 umx-4.0.0/umx/man/umx_cont_2_quantiles.Rd                |   34 
 umx-4.0.0/umx/man/umx_cor.Rd                             |   24 
 umx-4.0.0/umx/man/umx_explode.Rd                         |   15 
 umx-4.0.0/umx/man/umx_explode_twin_names.Rd              |   18 
 umx-4.0.0/umx/man/umx_file_load_pseudo.Rd                |only
 umx-4.0.0/umx/man/umx_find_object.Rd                     |   22 
 umx-4.0.0/umx/man/umx_fun_mean_sd.Rd                     |  127 -
 umx-4.0.0/umx/man/umx_get_bracket_addresses.Rd           |  125 -
 umx-4.0.0/umx/man/umx_get_checkpoint.Rd                  |   30 
 umx-4.0.0/umx/man/umx_get_options.Rd                     |   30 
 umx-4.0.0/umx/man/umx_grep.Rd                            |   15 
 umx-4.0.0/umx/man/umx_has_CIs.Rd                         |   30 
 umx-4.0.0/umx/man/umx_has_been_run.Rd                    |   26 
 umx-4.0.0/umx/man/umx_has_means.Rd                       |   26 
 umx-4.0.0/umx/man/umx_has_square_brackets.Rd             |   26 
 umx-4.0.0/umx/man/umx_is_MxData.Rd                       |   26 
 umx-4.0.0/umx/man/umx_is_MxMatrix.Rd                     |   26 
 umx-4.0.0/umx/man/umx_is_MxModel.Rd                      |   26 
 umx-4.0.0/umx/man/umx_is_RAM.Rd                          |   27 
 umx-4.0.0/umx/man/umx_is_class.Rd                        |   11 
 umx-4.0.0/umx/man/umx_is_cov.Rd                          |   27 
 umx-4.0.0/umx/man/umx_is_endogenous.Rd                   |   11 
 umx-4.0.0/umx/man/umx_is_exogenous.Rd                    |   11 
 umx-4.0.0/umx/man/umx_is_numeric.Rd                      |   11 
 umx-4.0.0/umx/man/umx_is_ordered.Rd                      |   39 
 umx-4.0.0/umx/man/umx_long2wide.Rd                       |   58 
 umx-4.0.0/umx/man/umx_lower2full.Rd                      |   34 
 umx-4.0.0/umx/man/umx_make.Rd                            |  125 -
 umx-4.0.0/umx/man/umx_make_MR_data.Rd                    |   34 
 umx-4.0.0/umx/man/umx_make_TwinData.Rd                   |   53 
 umx-4.0.0/umx/man/umx_make_fake_data.Rd                  |   34 
 umx-4.0.0/umx/man/umx_make_raw_from_cov.Rd               |   34 
 umx-4.0.0/umx/man/umx_make_sql_from_excel.Rd             |   12 
 umx-4.0.0/umx/man/umx_make_twin_data_nice.Rd             |   37 
 umx-4.0.0/umx/man/umx_means.Rd                           |   24 
 umx-4.0.0/umx/man/umx_move_file.Rd                       |   26 
 umx-4.0.0/umx/man/umx_msg.Rd                             |   23 
 umx-4.0.0/umx/man/umx_names.Rd                           |   31 
 umx-4.0.0/umx/man/umx_open.Rd                            |   13 
 umx-4.0.0/umx/man/umx_open_CRAN_page.Rd                  |   22 
 umx-4.0.0/umx/man/umx_pad.Rd                             |   23 
 umx-4.0.0/umx/man/umx_paste_names.Rd                     |   21 
 umx-4.0.0/umx/man/umx_polychoric.Rd                      |   34 
 umx-4.0.0/umx/man/umx_polypairwise.Rd                    |   34 
 umx-4.0.0/umx/man/umx_polytriowise.Rd                    |   34 
 umx-4.0.0/umx/man/umx_print.Rd                           |   43 
 umx-4.0.0/umx/man/umx_r_test.Rd                          |   24 
 umx-4.0.0/umx/man/umx_read_lower.Rd                      |   34 
 umx-4.0.0/umx/man/umx_rename.Rd                          |   74 
 umx-4.0.0/umx/man/umx_rename_file.Rd                     |   27 
 umx-4.0.0/umx/man/umx_reorder.Rd                         |   35 
 umx-4.0.0/umx/man/umx_residualize.Rd                     |   12 
 umx-4.0.0/umx/man/umx_rot.Rd                             |   20 
 umx-4.0.0/umx/man/umx_round.Rd                           |   24 
 umx-4.0.0/umx/man/umx_scale.Rd                           |   24 
 umx-4.0.0/umx/man/umx_scale_wide_twin_data.Rd            |   12 
 umx-4.0.0/umx/man/umx_score_scale.Rd                     |   68 
 umx-4.0.0/umx/man/umx_select_valid.Rd                    |   34 
 umx-4.0.0/umx/man/umx_set_auto_plot.Rd                   |   30 
 umx-4.0.0/umx/man/umx_set_auto_run.Rd                    |   30 
 umx-4.0.0/umx/man/umx_set_checkpoint.Rd                  |   30 
 umx-4.0.0/umx/man/umx_set_condensed_slots.Rd             |   30 
 umx-4.0.0/umx/man/umx_set_cores.Rd                       |   36 
 umx-4.0.0/umx/man/umx_set_data_variance_check.Rd         |   30 
 umx-4.0.0/umx/man/umx_set_mvn_optimization_options.Rd    |   30 
 umx-4.0.0/umx/man/umx_set_optimizer.Rd                   |   30 
 umx-4.0.0/umx/man/umx_set_plot_file_suffix.Rd            |   30 
 umx-4.0.0/umx/man/umx_set_plot_format.Rd                 |   30 
 umx-4.0.0/umx/man/umx_set_separator.Rd                   |   30 
 umx-4.0.0/umx/man/umx_set_silent.Rd                      |   30 
 umx-4.0.0/umx/man/umx_set_table_format.Rd                |   30 
 umx-4.0.0/umx/man/umx_stack.Rd                           |   34 
 umx-4.0.0/umx/man/umx_standardize.Rd                     |  125 -
 umx-4.0.0/umx/man/umx_str_chars.Rd                       |only
 umx-4.0.0/umx/man/umx_str_from_object.Rd                 |only
 umx-4.0.0/umx/man/umx_string_to_algebra.Rd               |  125 -
 umx-4.0.0/umx/man/umx_time.Rd                            |   16 
 umx-4.0.0/umx/man/umx_trim.Rd                            |   18 
 umx-4.0.0/umx/man/umx_var.Rd                             |   24 
 umx-4.0.0/umx/man/umx_wide2long.Rd                       |   13 
 umx-4.0.0/umx/man/umx_write_to_clipboard.Rd              |   14 
 umx-4.0.0/umx/man/us_skinfold_data.Rd                    |   52 
 umx-4.0.0/umx/man/xmuHasSquareBrackets.Rd                |  125 -
 umx-4.0.0/umx/man/xmuLabel_MATRIX_Model.Rd               |  125 -
 umx-4.0.0/umx/man/xmuLabel_Matrix.Rd                     |  125 -
 umx-4.0.0/umx/man/xmuLabel_RAM_Model.Rd                  |  124 -
 umx-4.0.0/umx/man/xmuMI.Rd                               |  127 -
 umx-4.0.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd  |  125 -
 umx-4.0.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd   |  125 -
 umx-4.0.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd   |  125 -
 umx-4.0.0/umx/man/xmuMaxLevels.Rd                        |  125 -
 umx-4.0.0/umx/man/xmuMinLevels.Rd                        |  125 -
 umx-4.0.0/umx/man/xmuPropagateLabels.Rd                  |  125 -
 umx-4.0.0/umx/man/xmuRAM2Ordinal.Rd                      |  125 -
 umx-4.0.0/umx/man/xmuTwinSuper_Continuous.Rd             |only
 umx-4.0.0/umx/man/xmuTwinUpgradeMeansToCovariateModel.Rd |only
 umx-4.0.0/umx/man/xmu_CI_merge.Rd                        |  125 -
 umx-4.0.0/umx/man/xmu_CI_stash.Rd                        |  125 -
 umx-4.0.0/umx/man/xmu_DF_to_mxData_TypeCov.Rd            |  125 -
 umx-4.0.0/umx/man/xmu_PadAndPruneForDefVars.Rd           |  125 -
 umx-4.0.0/umx/man/xmu_cell_is_on.Rd                      |  125 -
 umx-4.0.0/umx/man/xmu_check_levels_identical.Rd          |  125 -
 umx-4.0.0/umx/man/xmu_check_needs_means.Rd               |  125 -
 umx-4.0.0/umx/man/xmu_check_variance.Rd                  |  125 -
 umx-4.0.0/umx/man/xmu_clean_label.Rd                     |  125 -
 umx-4.0.0/umx/man/xmu_data_missing.Rd                    |only
 umx-4.0.0/umx/man/xmu_data_swap_a_block.Rd               |   87 
 umx-4.0.0/umx/man/xmu_describe_data_WLS.Rd               |  125 -
 umx-4.0.0/umx/man/xmu_dot_define_shapes.Rd               |   11 
 umx-4.0.0/umx/man/xmu_dot_make_paths.Rd                  |  136 -
 umx-4.0.0/umx/man/xmu_dot_make_residuals.Rd              |  136 -
 umx-4.0.0/umx/man/xmu_dot_maker.Rd                       |  136 -
 umx-4.0.0/umx/man/xmu_dot_mat2dot.Rd                     |   33 
 umx-4.0.0/umx/man/xmu_dot_move_ranks.Rd                  |  125 -
 umx-4.0.0/umx/man/xmu_dot_rank.Rd                        |   11 
 umx-4.0.0/umx/man/xmu_dot_rank_str.Rd                    |  125 -
 umx-4.0.0/umx/man/xmu_extract_column.Rd                  |only
 umx-4.0.0/umx/man/xmu_get_CI.Rd                          |  132 -
 umx-4.0.0/umx/man/xmu_lavaan_process_group.Rd            |  125 -
 umx-4.0.0/umx/man/xmu_make_TwinSuperModel.Rd             |only
 umx-4.0.0/umx/man/xmu_make_bin_cont_pair_data.Rd         |  125 -
 umx-4.0.0/umx/man/xmu_make_mxData.Rd                     |  154 -
 umx-4.0.0/umx/man/xmu_match.arg.Rd                       |  125 -
 umx-4.0.0/umx/man/xmu_name_from_lavaan_str.Rd            |  125 -
 umx-4.0.0/umx/man/xmu_path2twin.Rd                       |only
 umx-4.0.0/umx/man/xmu_path_regex.Rd                      |only
 umx-4.0.0/umx/man/xmu_safe_run_summary.Rd                |  133 -
 umx-4.0.0/umx/man/xmu_set_sep_from_suffix.Rd             |  125 -
 umx-4.0.0/umx/man/xmu_show_fit_or_comparison.Rd          |  125 -
 umx-4.0.0/umx/man/xmu_simplex_corner.Rd                  |  125 -
 umx-4.0.0/umx/man/xmu_standardize_ACE.Rd                 |  127 -
 umx-4.0.0/umx/man/xmu_standardize_ACEcov.Rd              |  125 -
 umx-4.0.0/umx/man/xmu_standardize_ACEv.Rd                |  125 -
 umx-4.0.0/umx/man/xmu_standardize_CP.Rd                  |  127 -
 umx-4.0.0/umx/man/xmu_standardize_IP.Rd                  |  129 -
 umx-4.0.0/umx/man/xmu_standardize_RAM.Rd                 |  132 -
 umx-4.0.0/umx/man/xmu_standardize_SexLim.Rd              |  125 -
 umx-4.0.0/umx/man/xmu_standardize_Simplex.Rd             |  127 -
 umx-4.0.0/umx/man/xmu_start_value_list.Rd                |  125 -
 umx-4.0.0/umx/man/xmu_starts.Rd                          |  141 -
 umx-4.0.0/umx/man/xmu_twin_add_WeightMatrices.Rd         |only
 umx-4.0.0/umx/man/xmu_twin_check.Rd                      |  125 -
 umx-4.0.0/umx/man/xmu_twin_get_var_names.Rd              |only
 umx-4.0.0/umx/man/xmu_twin_upgrade_selDvs2SelVars.Rd     |only
 307 files changed, 12676 insertions(+), 8749 deletions(-)

More information about umx at CRAN
Permanent link

Package showtext updated to version 0.8-1 with previous version 0.8 dated 2020-05-09

Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType', 'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted into polygons or raster images, hence after the plot has been created, it no longer relies on the font files. No external software such as 'Ghostscript' is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

Diff between showtext versions 0.8 dated 2020-05-09 and 0.8-1 dated 2020-05-25

 DESCRIPTION                |    8 ++++----
 MD5                        |    8 ++++----
 inst/NEWS.Rd               |    8 ++++++++
 inst/doc/introduction.html |   15 ++++++++-------
 src/showtext-win.def       |    1 +
 5 files changed, 25 insertions(+), 15 deletions(-)

More information about showtext at CRAN
Permanent link

New package i2dash with initial version 0.2
Package: i2dash
Type: Package
Title: Iterative and Interactive Dashboards
Version: 0.2
Authors@R: c( person(given = "Arsenij", family = "Ustjanzew", email = "arsenij.ustjanzew@mpi-bn.mpg.de", role = c("aut", "cre", "cph")), person(given = "Jens", family = "Preussner", email = "jens.preussner@mpi-bn.mpg.de", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1927-3458")), person(given = "Mario", family = "Looso", email = "mario.looso@mpi-bn.mpg.de", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1495-9530")))
Description: Create customized, web-based dashboards for data presentation, exploration and sharing. 'i2dash' integrates easily into existing data analysis pipelines and can organize scientific findings thematically across different pages and layouts.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
VignetteBuilder: knitr
Imports: magrittr, knitr, flexdashboard, yaml, assertive.sets, assertive.types, rmarkdown, stringr, stringi, glue, ymlthis, methods, stats, utils
Suggests: switchr, plotly, BiocStyle, xfun, htmltools, testthat, ComplexHeatmap, digest, ggplot2, gt, kableExtra, forcats, leaflet
Collate: 'i2dashboard.R' 'AllGenerics.R' 'assemble.R' 'components.R' 'colormap.R' 'get_set.R' 'pages.R' 'reexports.R' 'sidebar.R' 'vis_objects.R'
NeedsCompilation: no
Packaged: 2020-05-15 13:28:20 UTC; austjan
Author: Arsenij Ustjanzew [aut, cre, cph], Jens Preussner [aut, cph] (<https://orcid.org/0000-0003-1927-3458>), Mario Looso [aut, cph] (<https://orcid.org/0000-0003-1495-9530>)
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew@mpi-bn.mpg.de>
Repository: CRAN
Date/Publication: 2020-05-25 18:30:02 UTC

More information about i2dash at CRAN
Permanent link

Package d3r updated to version 0.9.0 with previous version 0.8.7 dated 2019-08-21

Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R. These helpers include 'htmltools::htmlDependency' functions, hierarchy builders, and conversion tools for 'partykit', 'igraph,' 'table', and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib, http://d3js.org), Kent Russell [aut, cre, cph] (R interface), Gregor Aisch [aut, cph] (d3-jetpack creator, https://github.com/gka/d3-jetpack), Adam Pearce [aut] (core contributor to d3-jetpack), Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

Diff between d3r versions 0.8.7 dated 2019-08-21 and 0.9.0 dated 2020-05-25

 DESCRIPTION                   |   16 
 MD5                           |   52 -
 NAMESPACE                     |    2 
 NEWS.md                       |    5 
 R/dependencies.R              |    4 
 R/hierarchy.R                 |    2 
 R/igraph.R                    |    2 
 R/party.R                     |    4 
 R/v8.R                        |    2 
 inst/www/d3/v5/API.md         | 1537 +++++++++++++++++++++---------------------
 inst/www/d3/v5/CHANGES.md     |    8 
 inst/www/d3/v5/README.md      |    6 
 inst/www/d3/v5/dist/d3.min.js |    4 
 man/change_to_name.Rd         |   38 -
 man/d3_dep_jetpack.Rd         |  162 ++--
 man/d3_dep_v3.Rd              |   66 -
 man/d3_dep_v4.Rd              |   66 -
 man/d3_dep_v5.Rd              |   66 -
 man/d3_igraph.Rd              |   84 +-
 man/d3_json.Rd                |   38 -
 man/d3_nest.Rd                |  143 +--
 man/d3_party.Rd               |  110 +--
 man/d3_table.Rd               |   56 -
 man/d3_v8.Rd                  |  260 +++----
 man/promote_na.Rd             |   32 
 man/promote_na_one.Rd         |   32 
 tests/testthat/test_v8.R      |    2 
 27 files changed, 1415 insertions(+), 1384 deletions(-)

More information about d3r at CRAN
Permanent link

New package distributionsrd with initial version 0.0.6
Package: distributionsrd
Title: Distribution Fitting and Evaluation
Version: 0.0.6
Authors@R: person("Ruben", "Dewitte", email = "ruben0dewitte@gmail.com", role = c("aut", "cre"))
Description: A library of density, distribution function, quantile function, (bounded) raw moments and random generation for a collection of distributions relevant for the firm size literature. Additionally, the package contains tools to fit these distributions using maximum likelihood and evaluate these distributions based on (i) log-likelihood ratio and (ii) deviations between the empirical and parametrically implied moments of the distributions. We add flexibility by allowing the considered distributions to be combined into piecewise composite or finite mixture distributions, as well as to be used when truncated. See Dewitte (2020) <https://hdl.handle.net/1854/LU-8644700> for a description and application of methods available in this package.
Depends: R (>= 3.6.0)
Imports: Rdpack, stats, flexmix, modeltools, methods
RdMacros: Rdpack
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown, tidyverse, testthat
NeedsCompilation: no
Packaged: 2020-05-15 16:43:21 UTC; ruben
Author: Ruben Dewitte [aut, cre]
Maintainer: Ruben Dewitte <ruben0dewitte@gmail.com>
Repository: CRAN
Date/Publication: 2020-05-25 18:50:03 UTC

More information about distributionsrd at CRAN
Permanent link

New package nombre with initial version 0.1.0
Package: nombre
Title: Number Names
Version: 0.1.0
Authors@R: person(given = "Alexander", family = "Rossell Hayes", role = c("aut", "cre"), email = "alexander@rossellhayes.com", comment = c(ORCID = "0000-0001-9412-0457"))
Description: Converts numeric vectors to character vectors of English number names. Provides conversion to cardinals, ordinals, numerators, and denominators. Supports negative and non-integer numbers.
License: MIT + file LICENSE
URL: https://github.com/rossellhayes/nombre
BugReports: https://github.com/rossellhayes/nombre/issues
Depends: R (>= 2.10)
Suggests: MASS, testthat, covr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-15 03:47:59 UTC; Alex
Author: Alexander Rossell Hayes [aut, cre] (<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Repository: CRAN
Date/Publication: 2020-05-25 17:50:03 UTC

More information about nombre at CRAN
Permanent link

New package higlasso with initial version 0.9.0
Package: higlasso
Title: Hierarchical Integrative Group LASSO
Version: 0.9.0
Authors@R: c( person(given = "Alexander", family = "Rix", role = c("aut", "cre"), email = "alexrix@umich.edu"), person(given = "Jonathan", family = "Boss", role = c("aut"), email = "bossjona@umich.edu") )
Description: Environmental health studies are increasingly measuring multiple pollutants to characterize the joint health effects attributable to exposure mixtures. However, the underlying dose-response relationship between toxicants and health outcomes of interest may be highly nonlinear, with possible nonlinear interaction effects. Hierarchical integrative group least absolute shrinkage and selection operator (HiGLASSO), developed by Boss et al (2020) <arXiv:2003.12844>, is a general framework to identify noteworthy nonlinear main and interaction effects in the presence of group structures among a set of exposures.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Depends: R (>= 3.5.0)
Imports: gcdnet, gglasso, purrr, splines, Rcpp
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-05-15 03:12:43 UTC; alex
Author: Alexander Rix [aut, cre], Jonathan Boss [aut]
Maintainer: Alexander Rix <alexrix@umich.edu>
Repository: CRAN
Date/Publication: 2020-05-25 17:40:03 UTC

More information about higlasso at CRAN
Permanent link

Package gradeR updated to version 1.0.6 with previous version 1.0.5 dated 2019-11-23

Title: Helps Grade Assignment Submissions that are R Scripts
Description: After being given the location of your students' submissions and a test file, the function runs each .R file, and evaluates the results from all the given tests. Results are neatly returned in a data frame that has a row for each student, and a column for each test.
Author: Taylor Brown [aut, cre]
Maintainer: Taylor Brown <trb5me@virginia.edu>

Diff between gradeR versions 1.0.5 dated 2019-11-23 and 1.0.6 dated 2020-05-25

 DESCRIPTION                                |   10 ++--
 MD5                                        |   28 +++++++------
 NAMESPACE                                  |    1 
 NEWS.md                                    |    9 +++-
 R/grade.r                                  |   59 ++++++++++++++++++++++++++++-
 README.md                                  |    2 
 build/vignette.rds                         |binary
 inst/doc/gradeR.R                          |    6 +-
 inst/doc/gradeR.Rmd                        |    2 
 inst/doc/gradeR.html                       |   11 +----
 inst/doc/using_gradeR_with_Gradescope.Rmd  |only
 inst/doc/using_gradeR_with_Gradescope.html |only
 man/calcGrades.Rd                          |   12 +++--
 man/calcGradesForGradescope.Rd             |only
 tests/testthat/test_calcGrades.r           |   16 +++++++
 vignettes/gradeR.Rmd                       |    2 
 vignettes/using_gradeR_with_Gradescope.Rmd |only
 17 files changed, 120 insertions(+), 38 deletions(-)

More information about gradeR at CRAN
Permanent link

New package GermaParl with initial version 1.4.2
Package: GermaParl
Type: Package
Title: Download and Augment the Corpus of Plenary Protocols of the German Bundestag
Version: 1.4.2
Date: 2020-05-12
Authors@R: c(person(given = "Andreas", family = "Blaette", role = c("aut", "cre"), email = "andreas.blaette@uni-due.de"))
Depends: R (>= 3.5.0)
Imports: polmineR, cwbtools (>= 0.2.0), data.table, methods, RcppCWB, jsonlite, RCurl
Suggests: topicmodels, knitr, rmarkdown, testthat
LazyData: yes
Description: Data package to disseminate the 'GermaParl' corpus of parliamentary debates of the German Bundestag prepared in the 'PolMine Project'. The package includes a small subset of the corpus for demonstration and testing purposes. The package includes functionality to load the full corpus from the open science repository 'Zenodo' and some auxiliary functions to enhance the corpus.
URL: https://github.com/polmine/GermaParl
BugReports: https://github.com/polmine/GermaParl/issues
License: GPL-3
VignetteBuilder: knitr
Encoding: UTF-8
Collate: 'GermaParl.R' 'download.R' 'lda.R' 'speeches.R'
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-15 07:52:27 UTC; andreasblaette
Author: Andreas Blaette [aut, cre]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Repository: CRAN
Date/Publication: 2020-05-25 18:00:06 UTC

More information about GermaParl at CRAN
Permanent link

Package emmeans updated to version 1.4.7 with previous version 1.4.6 dated 2020-04-19

Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays. Least-squares means are discussed, and the term "estimated marginal means" is suggested, in Searle, Speed, and Milliken (1980) Population marginal means in the linear model: An alternative to least squares means, The American Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph], Henrik Singmann [ctb], Jonathon Love [ctb], Paul Buerkner [ctb], Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>

Diff between emmeans versions 1.4.6 dated 2020-04-19 and 1.4.7 dated 2020-05-25

 DESCRIPTION                        |    8 +-
 MD5                                |  104 +++++++++++++++++++------------------
 NEWS.md                            |   20 +++++++
 R/MCMC-support.R                   |   10 ++-
 R/contrast.R                       |    4 -
 R/eff-size.R                       |   13 +++-
 R/emmGrid-methods.R                |   18 +++++-
 R/emmeans.R                        |    3 +
 R/emtrends.R                       |    9 ++-
 R/plot.emm.R                       |  100 ++++++++++++++++++-----------------
 R/pwpp.R                           |   10 ++-
 R/ref-grid.R                       |    4 -
 R/summary.R                        |   32 +++++++++--
 README.md                          |    4 -
 build/vignette.rds                 |binary
 inst/css/clean-simple.css          |    6 +-
 inst/doc/FAQs.html                 |    8 +-
 inst/doc/basics.html               |    6 +-
 inst/doc/comparisons.Rmd           |    2 
 inst/doc/comparisons.html          |   16 ++---
 inst/doc/confidence-intervals.R    |    3 +
 inst/doc/confidence-intervals.Rmd  |   14 ++++
 inst/doc/confidence-intervals.html |   26 ++++++---
 inst/doc/interactions.R            |    2 
 inst/doc/interactions.Rmd          |    2 
 inst/doc/interactions.html         |   48 ++++++++---------
 inst/doc/messy-data.R              |    2 
 inst/doc/messy-data.Rmd            |    4 -
 inst/doc/messy-data.html           |   24 ++++----
 inst/doc/models.Rmd                |    5 -
 inst/doc/models.html               |   12 ++--
 inst/doc/predictions.html          |    6 +-
 inst/doc/sophisticated.html        |    6 +-
 inst/doc/transformations.html      |    6 +-
 inst/doc/utilities.R               |    6 +-
 inst/doc/utilities.Rmd             |   12 ++--
 inst/doc/utilities.html            |   30 +++++-----
 inst/doc/vignette-topics.Rmd       |    7 ++
 inst/doc/vignette-topics.html      |   19 +++++-
 inst/doc/xplanations.R             |only
 inst/doc/xplanations.Rmd           |only
 inst/doc/xplanations.html          |only
 inst/doc/xtending.html             |   10 +--
 man/eff_size.Rd                    |    8 ++
 man/plot.Rd                        |    4 +
 man/summary.emmGrid.Rd             |   21 +++++--
 man/update.emmGrid.Rd              |   16 ++++-
 vignettes/comparisons.Rmd          |    2 
 vignettes/confidence-intervals.Rmd |   14 ++++
 vignettes/interactions.Rmd         |    2 
 vignettes/messy-data.Rmd           |    4 -
 vignettes/models.Rmd               |    5 -
 vignettes/utilities.Rmd            |   12 ++--
 vignettes/vignette-topics.Rmd      |    7 ++
 vignettes/xplanations.Rmd          |only
 55 files changed, 457 insertions(+), 259 deletions(-)

More information about emmeans at CRAN
Permanent link

Package rtemps updated to version 0.7.0 with previous version 0.6.0 dated 2020-05-12

Title: R Templates for Reproducible Data Analyses
Description: A collection of R Markdown templates for nicely structured, reproducible data analyses in R. The templates have embedded examples on how to write citations, footnotes, equations and use colored message/info boxes, how to cross-reference different parts/sections in the report, provide a nice table of contents (toc) with a References section and proper R session information as well as examples using DT tables and ggplot2 graphs. The bookdown Lite template theme supports code folding.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>

Diff between rtemps versions 0.6.0 dated 2020-05-12 and 0.7.0 dated 2020-05-25

 rtemps-0.6.0/rtemps/inst/rmarkdown/templates/bookdown_lite      |only
 rtemps-0.7.0/rtemps/DESCRIPTION                                 |    6 +-
 rtemps-0.7.0/rtemps/MD5                                         |   21 +-------
 rtemps-0.7.0/rtemps/NEWS.md                                     |    4 +
 rtemps-0.7.0/rtemps/R/create_temp.R                             |   25 +++++++---
 rtemps-0.7.0/rtemps/inst/rstudio/templates/project/skeleton.dcf |    2 
 6 files changed, 30 insertions(+), 28 deletions(-)

More information about rtemps at CRAN
Permanent link

Package labelled updated to version 2.4.0 with previous version 2.3.1 dated 2020-04-29

Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'. This package provides useful functions to deal with "haven_labelled" and "haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>), Daniel Ludecke [ctb], Hadley Wickham [ctb], Michal Bojanowski [ctb], François Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>

Diff between labelled versions 2.3.1 dated 2020-04-29 and 2.4.0 dated 2020-05-25

 labelled-2.3.1/labelled/R/mean.R                       |only
 labelled-2.3.1/labelled/man/labelled.Rd                |only
 labelled-2.3.1/labelled/man/labelled_spss.Rd           |only
 labelled-2.3.1/labelled/man/mean.haven_labelled.Rd     |only
 labelled-2.3.1/labelled/man/tagged_na.Rd               |only
 labelled-2.4.0/labelled/DESCRIPTION                    |    6 -
 labelled-2.4.0/labelled/MD5                            |   36 ++----
 labelled-2.4.0/labelled/NAMESPACE                      |    4 
 labelled-2.4.0/labelled/NEWS.md                        |    7 +
 labelled-2.4.0/labelled/R/labelled.R                   |   61 ----------
 labelled-2.4.0/labelled/R/na_values.R                  |   10 +
 labelled-2.4.0/labelled/R/retrocompatibility.R         |   26 ++++
 labelled-2.4.0/labelled/R/tagged_na.R                  |   48 --------
 labelled-2.4.0/labelled/R/to_factor.R                  |   18 ++-
 labelled-2.4.0/labelled/inst/doc/intro_labelled.Rmd    |    4 
 labelled-2.4.0/labelled/inst/doc/intro_labelled.html   |   90 +++++++--------
 labelled-2.4.0/labelled/man/recode.haven_labelled.Rd   |   98 ++++++++---------
 labelled-2.4.0/labelled/man/reexports.Rd               |only
 labelled-2.4.0/labelled/man/to_factor.Rd               |   15 ++
 labelled-2.4.0/labelled/man/update_labelled.Rd         |   14 ++
 labelled-2.4.0/labelled/tests/testthat/test-labelled.r |   14 +-
 labelled-2.4.0/labelled/vignettes/intro_labelled.Rmd   |    4 
 22 files changed, 213 insertions(+), 242 deletions(-)

More information about labelled at CRAN
Permanent link

Package xpose updated to version 0.4.9 with previous version 0.4.8 dated 2020-03-17

Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population) models from 'NONMEM' <http://www.iconplc.com/innovation/nonmem/>. 'xpose' facilitates data import, creation of numerical run summary and provide 'ggplot2'-based graphics for data exploration and model diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph], Andrew C. Hooker [aut, cph], Sebastian Ueckert [aut, cph], Mike K. Smith [ctb], Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>

Diff between xpose versions 0.4.8 dated 2020-03-17 and 0.4.9 dated 2020-05-25

 DESCRIPTION                            |    6 +--
 MD5                                    |   54 ++++++++++++++++-----------------
 NEWS.md                                |    3 +
 R/read_nm_tables.R                     |   16 ++++++---
 R/summarise_nm_model.R                 |    4 +-
 R/vpc_data.R                           |   18 +++++++++--
 build/vignette.rds                     |binary
 data/xpdb_ex_pk.rda                    |binary
 inst/doc/access_xpdb_data.html         |    8 ++--
 inst/doc/customize_plots.html          |   22 ++++++-------
 inst/doc/import_model_outputs.html     |    2 -
 inst/doc/introduction.html             |   16 ++++-----
 inst/doc/multiple_pages.html           |   12 +++----
 inst/doc/vpc.R                         |   24 +++++++-------
 inst/doc/vpc.Rmd                       |    6 +--
 inst/doc/vpc.html                      |   49 ++++++++++++++---------------
 tests/testthat/data/ctrl_psn_vpc.RData |binary
 tests/testthat/data/ctrl_special.RData |binary
 tests/testthat/test-console_outputs.R  |    6 +--
 tests/testthat/test-edits.R            |   11 ++++--
 tests/testthat/test-fetch_data.R       |   11 +++---
 tests/testthat/test-manual_import.R    |    1 
 tests/testthat/test-read_nm_model.R    |    5 +++
 tests/testthat/test-read_nm_tables.R   |    4 +-
 tests/testthat/test-vpc.R              |   23 +++++++++-----
 tests/testthat/test-xpdb_access.R      |   21 +++++++++---
 tests/testthat/test-xpose_data.R       |    7 ----
 vignettes/vpc.Rmd                      |    6 +--
 28 files changed, 188 insertions(+), 147 deletions(-)

More information about xpose at CRAN
Permanent link

Package tfdatasets updated to version 2.2.0 with previous version 2.0.0 dated 2019-12-13

Title: Interface to 'TensorFlow' Datasets
Description: Interface to 'TensorFlow' Datasets, a high-level library for building complex input pipelines from simple, re-usable pieces. See <https://www.tensorflow.org/programmers_guide/datasets> for additional details.
Author: Daniel Falbel [ctb, cph, cre], JJ Allaire [aut, cph], Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>), Kevin Ushey [aut], RStudio [cph, fnd], Google Inc. [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>

Diff between tfdatasets versions 2.0.0 dated 2019-12-13 and 2.2.0 dated 2020-05-25

 DESCRIPTION                           |    8 
 MD5                                   |   63 +--
 NAMESPACE                             |    1 
 R/dataset_methods.R                   |   21 +
 R/feature_spec.R                      |    9 
 inst/doc/feature_columns.R            |  140 +++----
 inst/doc/feature_columns.html         |  255 +++++++-------
 inst/doc/feature_spec.R               |  186 +++++-----
 inst/doc/feature_spec.Rmd             |    2 
 inst/doc/feature_spec.html            |  212 +++++++----
 inst/doc/introduction.R               |   68 +--
 inst/doc/introduction.html            |  603 +++++++++++++++++-----------------
 man/dataset_batch.Rd                  |    1 
 man/dataset_cache.Rd                  |    1 
 man/dataset_collect.Rd                |    1 
 man/dataset_concatenate.Rd            |    1 
 man/dataset_decode_delim.Rd           |    1 
 man/dataset_filter.Rd                 |    1 
 man/dataset_interleave.Rd             |    1 
 man/dataset_map.Rd                    |    1 
 man/dataset_map_and_batch.Rd          |    1 
 man/dataset_padded_batch.Rd           |    1 
 man/dataset_prefetch.Rd               |    1 
 man/dataset_prefetch_to_device.Rd     |    1 
 man/dataset_reduce.Rd                 |only
 man/dataset_repeat.Rd                 |    1 
 man/dataset_shuffle.Rd                |    1 
 man/dataset_shuffle_and_repeat.Rd     |    1 
 man/dataset_skip.Rd                   |    1 
 man/dataset_take.Rd                   |    1 
 man/dataset_window.Rd                 |    1 
 tests/testthat/test-dataset-methods.R |   11 
 vignettes/feature_spec.Rmd            |    2 
 33 files changed, 867 insertions(+), 732 deletions(-)

More information about tfdatasets at CRAN
Permanent link

Package EHRtemporalVariability updated to version 1.1.1 with previous version 1.1.0 dated 2020-05-21

Title: Delineating Temporal Dataset Shifts in Electronic Health Records
Description: Functions to delineate temporal dataset shifts in Electronic Health Records through the projection and visualization of dissimilarities among data temporal batches. This is done through the estimation of data statistical distributions over time and their projection in non-parametric statistical manifolds, uncovering the patterns of the data latent temporal variability. 'EHRtemporalVariability' is particularly suitable for multi-modal data and categorical variables with a high number of values, common features of biomedical data where traditional statistical process control or time-series methods may not be appropriate. 'EHRtemporalVariability' allows you to explore and identify dataset shifts through visual analytics formats such as Data Temporal heatmaps and Information Geometric Temporal (IGT) plots. An additional 'EHRtemporalVariability' Shiny app can be used to load and explore the package results and even to allow the use of these functions to those users non-experienced in R coding. Preprint published in medRxiv (Sáez et al. 2020) <doi:10.1101/2020.04.07.20056564>.
Author: Carlos Sáez [aut, cre], Alba Gutiérrez-Sacristán [aut], Isaac Kohane [aut], Juan M García-Gómez [aut], Paul Avillach [aut], Biomedical Data Science Lab, Universitat Politècnica de València (Spain) [cph], Department of Biomedical Informatics, Harvard Medical School [cph]
Maintainer: Carlos Sáez <carsaesi@upv.es>

Diff between EHRtemporalVariability versions 1.1.0 dated 2020-05-21 and 1.1.1 dated 2020-05-25

 DESCRIPTION                              |   14 +++++++-------
 MD5                                      |   20 ++++++++++----------
 NEWS.md                                  |    4 ++++
 R/allMethods.R                           |   16 ++++++++++------
 R/estimateIGTTrajectory.R                |    6 +++---
 README.md                                |    2 +-
 inst/doc/EHRtemporalVariability.Rmd      |    2 +-
 inst/doc/EHRtemporalVariability.html     |   22 +++++++++++-----------
 man/estimateIGTTrajectory-methods.Rd     |    2 +-
 vignettes/EHRtemporalVariability.Rmd     |    2 +-
 vignettes/EHRtemporalVariabilityHelp.pdf |binary
 11 files changed, 49 insertions(+), 41 deletions(-)

More information about EHRtemporalVariability at CRAN
Permanent link

New package TechPhD with initial version 1.0.0
Package: TechPhD
Type: Package
Title: Tests and Estimation of Covariance Change-Points for Hi-Dim Data
Version: 1.0.0
Date: 2020-05-08
Authors@R: c(person("Ping-Shou", "Zhong", role = c("aut", "cre"), email = "pszhong@uic.edu"), person("Shawn", "Santo", role = "aut"), person("Nurlan", "Abdukadyrov", role = "ctb"), person("Bo", "Liu", role="ctb"))
Depends: R (>= 3.6.0)
Description: An implementation of the procedures in Zhong et al. (2019) and Santo and Zhong (2020) for testing the homogeneity of covariance matrices, and estimating multiple change-points in high-dimensional (Hi-Dim) longitudinal/functional data with general temporospatial dependence. The null hypothesis of the homogeneity test is that all covariance matrices are equal at each time point. If the null hypothesis is rejected, the procedure further identifies the locations of the change points. Note: The package uses Open MP. Mac OS X users may need to update clang compiler so that it supports Open MP. References: Ping-Shou Zhong, Runze Li, Shawn Santo (2019) <doi:10.1093/biomet/asz011> Shawn Santo, Ping-Shou Zhong (2020) <arXiv:2005.01895>.
URL:
License: GPL (>= 2)
Imports: mvtnorm, stats
SystemRequirements: Open MP
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2020-05-14 17:39:36 UTC; Nurlan
Author: Ping-Shou Zhong [aut, cre], Shawn Santo [aut], Nurlan Abdukadyrov [ctb], Bo Liu [ctb]
Maintainer: Ping-Shou Zhong <pszhong@uic.edu>
Repository: CRAN
Date/Publication: 2020-05-25 13:30:07 UTC

More information about TechPhD at CRAN
Permanent link

New package nhlapi with initial version 0.1.2
Package: nhlapi
Type: Package
Title: A Minimum-Dependency 'R' Interface to the 'NHL' API
Version: 0.1.2
Authors@R: person("Jozef", "Hajnala", email = "jozef.hajnala@gmail.com", role = c("aut", "cre"))
Maintainer: Jozef Hajnala <jozef.hajnala@gmail.com>
Description: Retrieves and processes the data exposed by the open 'NHL' API. This includes information on players, teams, games, tournaments, drafts, standings, schedules and other endpoints. A lower-level interface to access the data via URLs directly is also provided.
Depends: R (>= 2.10)
Imports: jsonlite
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: testthat, roxygen2, knitr
License: AGPL-3
Language: en-US
URL: https://github.com/jozefhajnala/nhlapi
BugReports: https://github.com/jozefhajnala/nhlapi/issues
VignetteBuilder: knitr
SysDataCompression: xz
Copyright: NHL and the NHL Shield are registered trademarks of the National Hockey League. NHL and NHL team marks are the property of the NHL and its teams.
NeedsCompilation: no
Packaged: 2020-05-14 15:28:20 UTC; root
Author: Jozef Hajnala [aut, cre]
Repository: CRAN
Date/Publication: 2020-05-25 13:10:02 UTC

More information about nhlapi at CRAN
Permanent link

Package mada updated to version 0.5.10 with previous version 0.5.9 dated 2019-09-27

Title: Meta-Analysis of Diagnostic Accuracy
Description: Provides functions for diagnostic meta-analysis. Next to basic analysis and visualization the bivariate Model of Reitsma et al. (2005) that is equivalent to the HSROC of Rutter & Gatsonis (2001) can be fitted. A new approach based to diagnostic meta-analysis of Holling et al. (2012) is also available. Standard methods like summary, plot and so on are provided.
Author: Philipp Doebler
Maintainer: Philipp Doebler <philipp.doebler@googlemail.com>

Diff between mada versions 0.5.9 dated 2019-09-27 and 0.5.10 dated 2020-05-25

 DESCRIPTION        |   12 ++++++------
 MD5                |   20 ++++++++++----------
 build/vignette.rds |binary
 data/AuditC.rda    |binary
 data/Dementia.rda  |binary
 data/IAQ.rda       |binary
 data/SAQ.rda       |binary
 data/smoking.rda   |binary
 inst/doc/mada.Rnw  |    2 +-
 inst/doc/mada.pdf  |binary
 vignettes/mada.Rnw |    2 +-
 11 files changed, 18 insertions(+), 18 deletions(-)

More information about mada at CRAN
Permanent link

New package applicable with initial version 0.0.1
Package: applicable
Title: A Compilation of Applicability Domain Methods
Version: 0.0.1
Authors@R: c( person(given = "Marly", family = "Gotti", email = "marlygotti@gmail.com", role = c("aut", "cre")), person(given = "Max", family = "Kuhn", email = "max@rstudio.com", role = c("aut")), person("RStudio", role = "cph"))
Description: A modeling package compiling applicability domain methods in R. It combines different methods to measure the amount of extrapolation new samples can have from the training set. See Netzeva et al (2005) <doi:10.1177/026119290503300209> for an overview of applicability domains.
URL: https://github.com/tidymodels/applicable
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.3), ggplot2
Imports: hardhat (>= 0.1.2), rlang, stats, glue, tibble, proxyC, Matrix, dplyr, utils, purrr, tidyselect, tidyr
Suggests: recipes (>= 0.1.7), testthat (>= 2.1.0), knitr, rmarkdown, covr, AmesHousing, spelling, xml2, modeldata
RoxygenNote: 7.1.0
VignetteBuilder: knitr
Language: en-US
NeedsCompilation: no
Packaged: 2020-05-15 02:48:39 UTC; marlygotti
Author: Marly Gotti [aut, cre], Max Kuhn [aut], RStudio [cph]
Maintainer: Marly Gotti <marlygotti@gmail.com>
Repository: CRAN
Date/Publication: 2020-05-25 14:00:02 UTC

More information about applicable at CRAN
Permanent link

Package sjlabelled updated to version 1.1.5 with previous version 1.1.4 dated 2020-04-30

Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and writing data between R and other statistical software packages like 'SPSS', 'SAS' or 'Stata', and working with labelled data. This includes easy ways to get, set or change value and variable label attributes, to convert labelled vectors into factors or numeric (and vice versa), or to deal with multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>), David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjlabelled versions 1.1.4 dated 2020-04-30 and 1.1.5 dated 2020-05-25

 DESCRIPTION                    |    6 +--
 MD5                            |   14 ++++----
 NEWS.md                        |    6 +++
 R/as_label.R                   |   44 ++++++++++++++-----------
 R/set_labels.R                 |    4 +-
 inst/doc/intro_sjlabelled.html |   56 ++++++++++++++++----------------
 inst/doc/labelleddata.html     |    4 +-
 inst/doc/quasiquotation.html   |   70 ++++++++++++++++++++---------------------
 8 files changed, 107 insertions(+), 97 deletions(-)

More information about sjlabelled at CRAN
Permanent link

Package hddtools updated to version 0.9.1 with previous version 0.8.2 dated 2018-08-09

Title: Hydrological Data Discovery Tools
Description: Tools to discover hydrological data, accessing catalogues and databases from various data providers.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>), Wouter Buytaert [ctb] (Supervisor), Erin Le Dell [ctb] (Erin reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/73), Michael Sumner [ctb] (Michael reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/73)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>

Diff between hddtools versions 0.8.2 dated 2018-08-09 and 0.9.1 dated 2020-05-25

 hddtools-0.8.2/hddtools/R/getContent.R                          |only
 hddtools-0.8.2/hddtools/data/Data60UKcatalogue.rda              |only
 hddtools-0.8.2/hddtools/data/GRDCcatalogue.rda                  |only
 hddtools-0.8.2/hddtools/data/MOPEXcatalogue.rda                 |only
 hddtools-0.8.2/hddtools/data/SEPAcatalogue.rda                  |only
 hddtools-0.8.2/hddtools/man/Data60UKcatalogue.Rd                |only
 hddtools-0.8.2/hddtools/man/GRDCcatalogue.Rd                    |only
 hddtools-0.8.2/hddtools/man/MOPEXcatalogue.Rd                   |only
 hddtools-0.8.2/hddtools/man/SEPAcatalogue.Rd                    |only
 hddtools-0.8.2/hddtools/man/getContent.Rd                       |only
 hddtools-0.8.2/hddtools/man/tsGRDC.Rd                           |only
 hddtools-0.8.2/hddtools/tests/testthat/test-catalogueData60UK.R |only
 hddtools-0.8.2/hddtools/tests/testthat/test-catalogueGRDC.R     |only
 hddtools-0.8.2/hddtools/tests/testthat/test-catalogueMOPEX.R    |only
 hddtools-0.8.2/hddtools/tests/testthat/test-catalogueSEPA.R     |only
 hddtools-0.8.2/hddtools/tests/testthat/test-tsData60UK.R        |only
 hddtools-0.8.2/hddtools/tests/testthat/test-tsGRDC.R            |only
 hddtools-0.8.2/hddtools/tests/testthat/test-tsMOPEX.R           |only
 hddtools-0.8.2/hddtools/tests/testthat/test-tsSEPA.R            |only
 hddtools-0.8.2/hddtools/vignettes/kilphedir.png                 |only
 hddtools-0.8.2/hddtools/vignettes/morwick.png                   |only
 hddtools-0.8.2/hddtools/vignettes/sepa.png                      |only
 hddtools-0.8.2/hddtools/vignettes/tsGRDC.png                    |only
 hddtools-0.9.1/hddtools/DESCRIPTION                             |   28 
 hddtools-0.9.1/hddtools/MD5                                     |   82 
 hddtools-0.9.1/hddtools/NAMESPACE                               |   23 
 hddtools-0.9.1/hddtools/NEWS.md                                 |only
 hddtools-0.9.1/hddtools/R/Data60UK.R                            |  162 -
 hddtools-0.9.1/hddtools/R/GRDC.R                                |  438 -----
 hddtools-0.9.1/hddtools/R/KGClimateClass.R                      |   21 
 hddtools-0.9.1/hddtools/R/MOPEX.R                               |  292 +--
 hddtools-0.9.1/hddtools/R/SEPA.R                                |  184 --
 hddtools-0.9.1/hddtools/R/bboxSpatialPolygon.R                  |   31 
 hddtools-0.9.1/hddtools/R/hddtools-package.R                    |  134 -
 hddtools-0.9.1/hddtools/README.md                               |  119 -
 hddtools-0.9.1/hddtools/build/vignette.rds                      |binary
 hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.R            |  183 +-
 hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.Rmd          |  213 +-
 hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.html         |  847 +++++-----
 hddtools-0.9.1/hddtools/man/bboxSpatialPolygon.Rd               |   11 
 hddtools-0.9.1/hddtools/man/catalogueData60UK.Rd                |   33 
 hddtools-0.9.1/hddtools/man/catalogueGRDC.Rd                    |   40 
 hddtools-0.9.1/hddtools/man/catalogueMOPEX.Rd                   |   52 
 hddtools-0.9.1/hddtools/man/catalogueSEPA.Rd                    |   48 
 hddtools-0.9.1/hddtools/man/grdcLTMMD.Rd                        |    6 
 hddtools-0.9.1/hddtools/man/hddtools.Rd                         |    3 
 hddtools-0.9.1/hddtools/man/tsData60UK.Rd                       |   12 
 hddtools-0.9.1/hddtools/man/tsMOPEX.Rd                          |   29 
 hddtools-0.9.1/hddtools/man/tsSEPA.Rd                           |   16 
 hddtools-0.9.1/hddtools/tests/testthat/test-Data60UK.R          |only
 hddtools-0.9.1/hddtools/tests/testthat/test-GRDC.R              |only
 hddtools-0.9.1/hddtools/tests/testthat/test-MOPEX.R             |only
 hddtools-0.9.1/hddtools/tests/testthat/test-SEPA.R              |only
 hddtools-0.9.1/hddtools/vignettes/hddtools_vignette.Rmd         |  213 +-
 hddtools-0.9.1/hddtools/vignettes/leaflet.png                   |binary
 hddtools-0.9.1/hddtools/vignettes/mopex.png                     |binary
 56 files changed, 1354 insertions(+), 1866 deletions(-)

More information about hddtools at CRAN
Permanent link

Package designr updated to version 0.1.10 with previous version 0.1.9 dated 2019-12-04

Title: Balanced Factorial Designs
Description: Generate balanced factorial designs with crossed and nested random and fixed effects <https://github.com/mmrabe/designr>.
Author: Maximilian Rabe [aut, cre], Reinhold Kliegl [aut], Schad Daniel [aut]
Maintainer: Maximilian Rabe <maximilian.rabe@uni-potsdam.de>

Diff between designr versions 0.1.9 dated 2019-12-04 and 0.1.10 dated 2020-05-25

 DESCRIPTION                                        |    8 ++---
 MD5                                                |   26 ++++++++---------
 R/helpers.R                                        |    8 ++---
 R/methods.R                                        |    2 -
 inst/doc/design-to-dataframe.R                     |   16 +++++-----
 inst/doc/design-to-dataframe.html                  |   26 ++++++++---------
 man/design.contrasts.Rd                            |   14 ++++++---
 man/fixed.factor.Rd                                |   16 +++++++---
 man/nobs-factorDesign-method.Rd                    |    1 
 man/output.design.Rd                               |   32 +++++++++++++++------
 man/plus-factorContainer-factorContainer-method.Rd |    1 
 man/random.factor.Rd                               |    9 ++++-
 man/subset-factorDesign-method.Rd                  |    1 
 man/write.design.Rd                                |   18 ++++++++---
 14 files changed, 108 insertions(+), 70 deletions(-)

More information about designr at CRAN
Permanent link

New package upsetjs with initial version 1.0.2
Package: upsetjs
Type: Package
Title: 'HTMLWidget' Wrapper of 'UpSet.s' for Exploring Large Set Intersections
Description: 'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets. This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
Version: 1.0.2
Date: 2020-05-14
Author: Samuel Gratzl [aut, cre]
Authors@R: person("Samuel", "Gratzl", email = "sam@sgratzl.com", role = c("aut", "cre"))
Maintainer: Samuel Gratzl <sam@sgratzl.com>
URL: https://github.com/upsetjs/upsetjs_r/
BugReports: https://github.com/upsetjs/upsetjs_r/issues
Depends: R (>= 3.2.0)
License: AGPL-3 | file LICENSE
Encoding: UTF-8
Imports: htmlwidgets, magrittr
Suggests: knitr, crosstalk, rmarkdown, formatR
LazyData: true
RoxygenNote: 7.0.2
VignetteBuilder: knitr
Language: en-US
NeedsCompilation: no
Packaged: 2020-05-14 11:03:15 UTC; sam
Repository: CRAN
Date/Publication: 2020-05-25 10:00:03 UTC

More information about upsetjs at CRAN
Permanent link

Package survPen updated to version 1.5.0 with previous version 1.3.0 dated 2020-02-03

Title: Multidimensional Penalized Splines for Survival and Net Survival Models
Description: Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (thanks to explicit calculation of the derivatives of the likelihood) and offers a unified framework for multidimensional penalized hazard and excess hazard models. survPen may be of interest to those who 1) analyse any kind of time-to-event data: mortality, disease relapse, machinery breakdown, unemployment, etc 2) wish to describe the associated hazard and to understand which predictors impact its dynamics. See Fauvernier et al. (2019a) <doi:10.21105/joss.01434> for an overview of the package and Fauvernier et al. (2019b) <doi:10.1111/rssc.12368> for the method.
Author: Mathieu Fauvernier [aut, cre], Laurent Roche [aut], Laurent Remontet [aut], Zoe Uhry [ctb], Nadine Bossard [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>

Diff between survPen versions 1.3.0 dated 2020-02-03 and 1.5.0 dated 2020-05-25

 survPen-1.3.0/survPen/R/survPenV1_30.r                             |only
 survPen-1.3.0/survPen/src/rcpp_multmatvec.cpp                      |only
 survPen-1.5.0/survPen/DESCRIPTION                                  |    8 
 survPen-1.5.0/survPen/MD5                                          |   85 +++--
 survPen-1.5.0/survPen/NAMESPACE                                    |    5 
 survPen-1.5.0/survPen/NEWS                                         |   10 
 survPen-1.5.0/survPen/R/RcppExports.R                              |  106 +++++++
 survPen-1.5.0/survPen/R/survPenV1_50.r                             |only
 survPen-1.5.0/survPen/build/vignette.rds                           |binary
 survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.R    |  120 ++++----
 survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.Rmd  |   22 +
 survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.html |  143 ++++++----
 survPen-1.5.0/survPen/man/Hess_rho.Rd                              |only
 survPen-1.5.0/survPen/man/NR.beta.Rd                               |    5 
 survPen-1.5.0/survPen/man/NR.rho.Rd                                |   24 +
 survPen-1.5.0/survPen/man/colSums2.Rd                              |only
 survPen-1.5.0/survPen/man/constraint.Rd                            |    2 
 survPen-1.5.0/survPen/man/cor.var.Rd                               |    2 
 survPen-1.5.0/survPen/man/crs.FP.Rd                                |    2 
 survPen-1.5.0/survPen/man/crs.Rd                                   |    2 
 survPen-1.5.0/survPen/man/datCancer.Rd                             |    6 
 survPen-1.5.0/survPen/man/deriv_R.Rd                               |only
 survPen-1.5.0/survPen/man/design.matrix.Rd                         |   15 -
 survPen-1.5.0/survPen/man/grad_rho.Rd                              |only
 survPen-1.5.0/survPen/man/grapes-cross-grapes.Rd                   |only
 survPen-1.5.0/survPen/man/instr.Rd                                 |    2 
 survPen-1.5.0/survPen/man/inv.repam.Rd                             |    2 
 survPen-1.5.0/survPen/man/model.cons.Rd                            |   24 +
 survPen-1.5.0/survPen/man/predict.survPen.Rd                       |   30 +-
 survPen-1.5.0/survPen/man/print.summary.survPen.Rd                 |    2 
 survPen-1.5.0/survPen/man/rd.Rd                                    |    2 
 survPen-1.5.0/survPen/man/repam.Rd                                 |    2 
 survPen-1.5.0/survPen/man/smf.Rd                                   |    2 
 survPen-1.5.0/survPen/man/smooth.cons.Rd                           |   14 
 survPen-1.5.0/survPen/man/smooth.cons.integral.Rd                  |   16 -
 survPen-1.5.0/survPen/man/smooth.spec.Rd                           |   12 
 survPen-1.5.0/survPen/man/summary.survPen.Rd                       |    2 
 survPen-1.5.0/survPen/man/survPen.Rd                               |   27 +
 survPen-1.5.0/survPen/man/survPen.fit.Rd                           |   14 
 survPen-1.5.0/survPen/man/survPenObject.Rd                         |    3 
 survPen-1.5.0/survPen/man/tensor.in.Rd                             |    2 
 survPen-1.5.0/survPen/man/tensor.prod.S.Rd                         |    2 
 survPen-1.5.0/survPen/man/tensor.prod.X.Rd                         |    2 
 survPen-1.5.0/survPen/src/Makevars                                 |only
 survPen-1.5.0/survPen/src/Makevars.win                             |only
 survPen-1.5.0/survPen/src/RcppExports.cpp                          |  118 ++++++++
 survPen-1.5.0/survPen/src/rcpp_survPen.cpp                         |only
 survPen-1.5.0/survPen/src/survPen_types.h                          |    1 
 survPen-1.5.0/survPen/vignettes/survival_analysis_with_survPen.Rmd |   22 +
 49 files changed, 647 insertions(+), 211 deletions(-)

More information about survPen at CRAN
Permanent link

New package sketcher with initial version 0.1.3
Package: sketcher
Title: Pencil Sketch Effect
Version: 0.1.3
Authors@R: person(given = "Hiroyuki", family = "Tsuda", role = c("aut", "cre"), email = "tsuda16k@gmail.com", comment = c(ORCID = "0000-0001-9396-5327"))
Description: An implementation of image processing effects that convert a photo into a line drawing image. For details, please refer to Tsuda, H. (2020). sketcher: An R package for converting a photo into a sketch style image. <doi:10.31234/osf.io/svmw5>.
URL: https://htsuda.net/sketcher/
BugReports: https://github.com/tsuda16k/sketcher/issues/
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Imports: jpeg, png, readbitmap, downloader, imager, magrittr, methods, stringr, dplyr
Depends: R (>= 2.10)
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2020-05-14 06:19:38 UTC; tsuhir
Author: Hiroyuki Tsuda [aut, cre] (<https://orcid.org/0000-0001-9396-5327>)
Maintainer: Hiroyuki Tsuda <tsuda16k@gmail.com>
Repository: CRAN
Date/Publication: 2020-05-25 09:10:02 UTC

More information about sketcher at CRAN
Permanent link

Package rnrfa updated to version 2.0.3 with previous version 2.0.2 dated 2020-02-01

Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow Archive (<http://nrfa.ceh.ac.uk/>, terms and conditions: <http://nrfa.ceh.ac.uk/costs-terms-and-conditions>). The package contains R wrappers to the UK NRFA data temporary-API. There are functions to retrieve stations falling in a bounding box, to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>), Matthew Fry [ctb] (Matthew supervised the unofficial API integration.), Wouter Buytaert [ctb] (This package is part of Claudia Vitolo's PhD work and Wouter is the supervisor.), Michael Spencer [ctb] (Michael updated the function osg_parse to work with grid references of different lengths.), Tobias Gauster [ctb] (Tobias improved the function osg_parse introducing vectorisation), Ilaria Prosdocimi [ctb] (Ilaria contributed to the adaptation of the package to the 2019 API)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>

Diff between rnrfa versions 2.0.2 dated 2020-02-01 and 2.0.3 dated 2020-05-25

 DESCRIPTION                     |    8 ++++----
 MD5                             |   22 +++++++++++-----------
 R/catalogue.R                   |    4 ++++
 R/internals.R                   |   20 +++++++++++++-------
 README.md                       |    5 +++--
 build/vignette.rds              |binary
 inst/doc/rnrfa-vignette.html    |   12 +++++-------
 man/catalogue.Rd                |    9 +++++++--
 man/get_ts.Rd                   |   10 ++++++++--
 man/plot_rain_flow.Rd           |    3 +--
 tests/testthat/test-catalogue.R |    4 ++--
 tests/testthat/test-get_ts.R    |    6 +++++-
 12 files changed, 63 insertions(+), 40 deletions(-)

More information about rnrfa at CRAN
Permanent link

New package pharmaRTF with initial version 0.1.0
Package: pharmaRTF
Type: Package
Title: Enhanced RTF Wrapper for Use with Existing Table Packages
Version: 0.1.0
Authors@R: c( person(family = "Miller", given = "Eli", email = "eli.miller@atorusresearch.com", role = "aut", comment = c(ORCID = "0000-0002-2127-9456")), person(family = "Tarasiewicz", given = "Ashley", email = "Ashley.Tarasiewicz@atorusresearch.com", role = "aut"), person(family = "Stackhouse", given = "Michael", email = "mike.stackhouse@atorusresearch.com", role = c("aut", "cre")), person(given = "Atorus Research LLC", role = "cph") )
Description: Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: assertthat (>= 0.2.1), stringr (>= 1.4.0), purrr (>= 0.3.3)
Suggests: testthat (>= 2.1.0), huxtable (>= 4.7.1), dplyr (>= 0.8.4), readr (>= 1.3.1), gt (>= 0.2.0), magrittr (>= 1.5), knitr (>= 1.28), rmarkdown (>= 2.1), readxl (>= 1.3.1), kableExtra (>= 1.1.0), plyr (>= 1.8.5), tidyverse (>= 1.3.0)
RoxygenNote: 7.0.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-05-14 12:54:56 UTC; emiller
Author: Eli Miller [aut] (<https://orcid.org/0000-0002-2127-9456>), Ashley Tarasiewicz [aut], Michael Stackhouse [aut, cre], Atorus Research LLC [cph]
Maintainer: Michael Stackhouse <mike.stackhouse@atorusresearch.com>
Repository: CRAN
Date/Publication: 2020-05-25 10:00:06 UTC

More information about pharmaRTF at CRAN
Permanent link

New package exams.mylearn with initial version 1.1
Package: exams.mylearn
Title: Question Generation in the 'MyLearn' XML Format
Version: 1.1
Authors@R: person(given = "Darjus", family = "Hosszejni", role = c("aut", "cre"), email = "darjus.hosszejni@wu.ac.at", comment = c(ORCID = "0000-0002-3803-691X"))
Description: Randomized multiple-select and single-select question generation for the 'MyLearn' teaching and learning platform. Question templates in the form of the R/exams package (see <http://www.r-exams.org/>) are transformed into XML format required by 'MyLearn'.
License: GPL-3
Depends: R (>= 3.3.0)
Imports: exams (>= 2.3-4), glue (>= 1.4.0), stringr (>= 1.4.0), stringi (>= 1.4.6), xml2 (>= 1.2.5)
Suggests: knitr
URL: https://github.com/hdarjus/WU-MyLearn-QGen
BugReports: https://github.com/hdarjus/WU-MyLearn-QGen/issues
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-14 09:58:01 UTC; dhosszejni
Author: Darjus Hosszejni [aut, cre] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Darjus Hosszejni <darjus.hosszejni@wu.ac.at>
Repository: CRAN
Date/Publication: 2020-05-25 09:50:02 UTC

More information about exams.mylearn at CRAN
Permanent link

New package BOJ with initial version 0.2.2
Package: BOJ
Type: Package
Title: Interface to Bank of Japan Statistics
Version: 0.2.2
Date: 2020-05-14
Authors@R: person("Stefan", "Angrick", email = "contact@stefanangrick.net", role = c("aut", "cre", "cph"))
Description: Provides an interface to data provided by the Bank of Japan <https://www.boj.or.jp>.
License: MIT + file LICENSE
LazyData: TRUE
Suggests: knitr, rmarkdown, ggplot2, zoo
Imports: dplyr, readr, tidyr, tidyselect, rvest, xml2
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-05-14 11:43:15 UTC; qwerty
Author: Stefan Angrick [aut, cre, cph]
Maintainer: Stefan Angrick <contact@stefanangrick.net>
Repository: CRAN
Date/Publication: 2020-05-25 10:00:10 UTC

More information about BOJ at CRAN
Permanent link

Package rversions updated to version 2.0.2 with previous version 2.0.1 dated 2019-12-03

Title: Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Description: Query the main 'R' 'SVN' repository to find the versions 'r-release' and 'r-oldrel' refer to, and also all previous 'R' versions and their release dates.
Author: Gábor Csárdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

Diff between rversions versions 2.0.1 dated 2019-12-03 and 2.0.2 dated 2020-05-25

 DESCRIPTION  |    6 +++---
 MD5          |   10 +++++-----
 NEWS.md      |    4 ++++
 R/nicks.R    |    4 +++-
 R/urls.R     |    2 +-
 inst/NEWS.md |    4 ++++
 6 files changed, 20 insertions(+), 10 deletions(-)

More information about rversions at CRAN
Permanent link

Package joint.Cox updated to version 3.8 with previous version 3.7 dated 2019-11-20

Title: Joint Frailty-Copula Models for Tumour Progression and Death in Meta-Analysis
Description: Fit survival data and perform dynamic prediction under joint frailty-copula models for tumour progression and death. Likelihood-based methods are employed for estimating model parameters, where the baseline hazard functions are modeled by the cubic M-spline or the Weibull model. The methods are applicable for meta-analytic data containing individual-patient information from several studies. Survival outcomes need information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression). Methodologies were published in Emura et al. (2017) <doi:10.1177/0962280215604510>, Emura et al. (2018) <doi:10.1177/0962280216688032>, Emura et al. (2019) <doi:10.1177/0962280219892295>, and Wu et al. 2020 <doi:10.1007/s00180-020-00977-1>. See also the book of Emura et al. (2019) <doi:10.1007/978-981-13-3516-7>. Survival data from ovarian cancer patients are also available.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

Diff between joint.Cox versions 3.7 dated 2019-11-20 and 3.8 dated 2020-05-25

 DESCRIPTION                 |   24 ++++++++++++------------
 MD5                         |   12 ++++++------
 man/Weibull.simu.Rd         |    6 +++---
 man/cmprskCox.reg.Rd        |   12 ++++++------
 man/dataOvarian.Rd          |   25 +++++++++++++++----------
 man/joint.Cox-package.Rd    |   24 +++++++++++++-----------
 man/jointCox.Weibull.reg.Rd |   15 +++++++++++----
 7 files changed, 66 insertions(+), 52 deletions(-)

More information about joint.Cox at CRAN
Permanent link

Package bigsparser updated to version 0.2.0 with previous version 0.1.0 dated 2020-04-10

Title: Sparse Matrix Format with Data on Disk
Description: Provides a sparse matrix format with data stored on disk, to be used in both R and C++. This is intended for more efficient use of sparse data in C++ and also when parallelizing, since data on disk does not need copying. Only a limited number of features will be implemented. For now, conversion can be performed from a 'dgCMatrix' of R package 'Matrix'.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>

Diff between bigsparser versions 0.1.0 dated 2020-04-10 and 0.2.0 dated 2020-05-25

 DESCRIPTION                                      |    8 ++++----
 MD5                                              |   19 ++++++++++++-------
 NAMESPACE                                        |    1 +
 R/RcppExports.R                                  |    4 ++++
 R/prod.R                                         |    8 +++++++-
 R/solve-sym.R                                    |only
 README.md                                        |    2 ++
 inst/include/bigsparser/EigenMatrixReplacement.h |only
 inst/include/bigsparser/SFBM.h                   |    3 +++
 man/sp_solve_sym.Rd                              |only
 src/RcppExports.cpp                              |   17 +++++++++++++++++
 src/solve.cpp                                    |only
 tests/testthat/test-solve.R                      |only
 13 files changed, 50 insertions(+), 12 deletions(-)

More information about bigsparser at CRAN
Permanent link

Package season updated to version 0.3.11 with previous version 0.3.10 dated 2020-03-16

Title: Seasonal Analysis of Health Data
Description: Routines for the seasonal analysis of health data, including regression models, time-stratified case-crossover, plotting functions and residual checks, see Barnett and Dobson (2010) ISBN 978-3-642-10748-1. Thanks to Yuming Guo for checking the case-crossover code.
Author: Adrian Barnett and Peter Baker
Maintainer: Adrian Barnett <a.barnett@qut.edu.au>

Diff between season versions 0.3.10 dated 2020-03-16 and 0.3.11 dated 2020-05-25

 DESCRIPTION                   |    6 +++---
 MD5                           |   12 ++++++------
 R/cosinor.R                   |    1 +
 R/print.summary.Cosinor.R     |    4 ++--
 R/summary.Cosinor.R           |    3 ++-
 build/vignette.rds            |binary
 inst/doc/season-vignette.html |   18 ++++++++----------
 7 files changed, 22 insertions(+), 22 deletions(-)

More information about season at CRAN
Permanent link

Package languageserver updated to version 0.3.6 with previous version 0.3.5 dated 2020-03-21

Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai [aut, cre], Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>

Diff between languageserver versions 0.3.5 dated 2020-03-21 and 0.3.6 dated 2020-05-25

 DESCRIPTION                       |   16 +-
 MD5                               |   41 +++----
 NEWS.md                           |  220 ++++++++++++++++----------------------
 R/completion.R                    |  148 +++++++++++++++----------
 R/diagnostics.R                   |   13 +-
 R/document.R                      |   24 ++--
 R/handlers-general.R              |   22 ---
 R/handlers-textsync.R             |    2 
 R/languagebase.R                  |    2 
 R/languageclient.R                |    2 
 R/languageserver.R                |   20 +--
 R/namespace.R                     |    4 
 R/task.R                          |   39 +++---
 R/utils.R                         |   13 +-
 R/workspace.R                     |  101 ++++++++++++++++-
 README.md                         |   17 +-
 inst/projects/mypackage/NAMESPACE |    2 
 man/workspace_completion.Rd       |    2 
 tests/testthat/helper-utils.R     |    1 
 tests/testthat/test-codeunits.R   |    4 
 tests/testthat/test-completion.R  |   70 +++++++++++-
 tests/testthat/test-null-root.R   |only
 22 files changed, 476 insertions(+), 287 deletions(-)

More information about languageserver at CRAN
Permanent link

Package lamW updated to version 1.3.2 with previous version 1.3.0 dated 2017-04-25

Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre] (<https://orcid.org/0000-0002-3039-0703>)
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

Diff between lamW versions 1.3.0 dated 2017-04-25 and 1.3.2 dated 2020-05-25

 lamW-1.3.0/lamW/src/init.c                      |only
 lamW-1.3.2/lamW/DESCRIPTION                     |   12 +-
 lamW-1.3.2/lamW/MD5                             |   26 ++--
 lamW-1.3.2/lamW/R/RcppExports.R                 |    6 -
 lamW-1.3.2/lamW/README.md                       |   71 +++++++++++-
 lamW-1.3.2/lamW/build/partial.rdb               |binary
 lamW-1.3.2/lamW/inst/CITATION                   |only
 lamW-1.3.2/lamW/inst/News.Rd                    |   80 +++++++++++--
 lamW-1.3.2/lamW/inst/include/lamW.h             |   18 +--
 lamW-1.3.2/lamW/inst/include/lamW_RcppExports.h |  138 ++++++++++++------------
 lamW-1.3.2/lamW/man/lamW-package.Rd             |    6 -
 lamW-1.3.2/lamW/man/lamW.Rd                     |   12 --
 lamW-1.3.2/lamW/src/RcppExports.cpp             |   42 +++++--
 lamW-1.3.2/lamW/src/lambertW.cpp                |   59 +++++-----
 lamW-1.3.2/lamW/tests/testthat/test-lamW.R      |   35 ++++--
 15 files changed, 333 insertions(+), 172 deletions(-)

More information about lamW at CRAN
Permanent link

Package AzureGraph updated to version 1.1.1 with previous version 1.1.0 dated 2019-11-08

Title: Simple Interface to 'Microsoft Graph'
Description: A simple interface to the 'Microsoft Graph' API <https://docs.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. Currently, this package aims to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it can be easily extended to cover other services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre], Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>

Diff between AzureGraph versions 1.1.0 dated 2019-11-08 and 1.1.1 dated 2020-05-25

 DESCRIPTION         |    6 +++---
 MD5                 |   10 +++++-----
 NEWS.md             |    4 ++++
 R/AzureGraph.R      |    2 +-
 build/vignette.rds  |binary
 inst/doc/intro.html |   22 +++++++++++++---------
 6 files changed, 26 insertions(+), 18 deletions(-)

More information about AzureGraph at CRAN
Permanent link

Package norm2 (with last version 2.0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-05-11 2.0.3

Permanent link
Package ioanalysis updated to version 0.3.1 with previous version 0.3.0 dated 2020-05-06

Title: Input Output Analysis
Description: Calculates fundamental IO matrices (Leontief, Wassily W. (1951) <doi:10.1038/scientificamerican1051-15>); within period analysis via various rankings and coefficients (Sonis and Hewings (2006) <doi:10.1080/09535319200000013>, Blair and Miller (2009) <ISBN:978-0-521-73902-3>, Antras et al (2012) <doi:10.3386/w17819>, Hummels, Ishii, and Yi (2001) <doi:10.1016/S0022-1996(00)00093-3>); across period analysis with impact analysis (Dietzenbacher, van der Linden, and Steenge (2006) <doi:10.1080/09535319300000017>, Sonis, Hewings, and Guo (2006) <doi:10.1080/09535319600000002>); and a variety of table operators.
Author: John Wade [aut, cre], Ignacio Sarmiento-Barbieri [aut]
Maintainer: John Wade <jjpwade2@illinois.edu>

Diff between ioanalysis versions 0.3.0 dated 2020-05-06 and 0.3.1 dated 2020-05-25

 DESCRIPTION              |    6 +++---
 MD5                      |    7 ++++---
 R/feedback.loop.R        |   35 ++++++++++++++++++++++++++++++-----
 R/feedback.loop.matrix.R |only
 man/feedback.loop.Rd     |   32 ++++++++++++++++++++++----------
 5 files changed, 59 insertions(+), 21 deletions(-)

More information about ioanalysis at CRAN
Permanent link

Package embed updated to version 0.1.0 with previous version 0.0.6 dated 2020-03-17

Title: Extra Recipes for Encoding Categorical Predictors
Description: Predictors can be converted to one or more numeric representations using simple generalized linear models <arXiv:1611.09477> or nonlinear models <arXiv:1604.06737>. Most encoding methods are supervised.
Author: Max Kuhn [aut, cre], RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>

Diff between embed versions 0.0.6 dated 2020-03-17 and 0.1.0 dated 2020-05-25

 DESCRIPTION                           |   18 +++++------
 MD5                                   |   45 +++++++++++++++++-----------
 NAMESPACE                             |   34 +++++++++++----------
 NEWS.md                               |   19 +++++++++++
 R/0_imports.R                         |only
 R/bayes.R                             |   26 ++++------------
 R/discretize_cart.R                   |only
 R/discretize_xgb.R                    |only
 R/glm.R                               |   20 +++---------
 R/hash.R                              |only
 R/lme.R                               |   21 +++----------
 R/tf.R                                |   54 +++++++++++-----------------------
 R/tunable.R                           |   34 +++++++++++++++++++++
 R/umap.R                              |   18 +----------
 R/woe.R                               |   25 +++++----------
 man/add_woe.Rd                        |    2 -
 man/step_discretize_cart.Rd           |only
 man/step_discretize_xgb.Rd            |only
 man/step_embed.Rd                     |   14 ++++----
 man/step_feature_hash.Rd              |only
 man/step_lencode_mixed.Rd             |    2 -
 man/tunable.step_embed.Rd             |    6 +++
 tests/testthat/make_binned_data.R     |only
 tests/testthat/test_discretize_cart.R |only
 tests/testthat/test_discretize_xgb.R  |only
 tests/testthat/test_hash.R            |only
 tests/testthat/test_no_pooling.R      |    2 +
 tests/testthat/test_pooling.R         |   17 +++++++---
 tests/testthat/test_woe.R             |   20 +++++++++---
 29 files changed, 200 insertions(+), 177 deletions(-)

More information about embed at CRAN
Permanent link

Package mortyr (with last version 0.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-07-19 0.0.1

Permanent link
Package TVMM updated to version 3.0 with previous version 2.0 dated 2020-03-26

Title: Multivariate Tests for the Vector of Means
Description: This is a statistical tool interactive that provides multivariate statistical tests that are more powerful than traditional Hotelling T2 test and LRT (likelihood ratio test) for the vector of normal mean populations with and without contamination and non-normal populations (Henrique J. P. Alves & Daniel F. Ferreira (2019) <DOI: 10.1080/03610918.2019.1693596>).
Author: Henrique Jose de Paula Alves [aut, cre], Ben Deivide de Oliveira Batista [ctb], Daniel Furtado Ferreira [aut]
Maintainer: Henrique Jose de Paula Alves <jpahenrique@gmail.com>

Diff between TVMM versions 2.0 dated 2020-03-26 and 3.0 dated 2020-05-25

 DESCRIPTION         |   19 +++++++++++--------
 MD5                 |   21 ++++++++++++++++-----
 NAMESPACE           |   43 ++++++++++++++++++++++++++++++-------------
 R/T2Boot.R          |    6 +++---
 R/T2O.R             |    4 ++--
 R/T2RobustBoot.R    |    4 ++--
 R/globalvariables.R |only
 R/guiTVMM.R         |only
 inst                |only
 man/guiTVMM.Rd      |only
 10 files changed, 64 insertions(+), 33 deletions(-)

More information about TVMM at CRAN
Permanent link

Package dm updated to version 0.1.3 with previous version 0.1.2 dated 2020-05-04

Title: Relational Data Models
Description: Provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Darko Bergant [aut], Katharina Brunner [ctb], energie360° AG [fnd], cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

Diff between dm versions 0.1.2 dated 2020-05-04 and 0.1.3 dated 2020-05-25

 dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.R                      |only
 dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.Rmd                    |only
 dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.html                   |only
 dm-0.1.2/dm/inst/doc/dm-db.R                                              |only
 dm-0.1.2/dm/inst/doc/dm-db.Rmd                                            |only
 dm-0.1.2/dm/inst/doc/dm-db.html                                           |only
 dm-0.1.2/dm/inst/doc/dm-df.R                                              |only
 dm-0.1.2/dm/inst/doc/dm-df.Rmd                                            |only
 dm-0.1.2/dm/inst/doc/dm-df.html                                           |only
 dm-0.1.2/dm/inst/doc/dm-filtering.R                                       |only
 dm-0.1.2/dm/inst/doc/dm-filtering.Rmd                                     |only
 dm-0.1.2/dm/inst/doc/dm-filtering.html                                    |only
 dm-0.1.2/dm/inst/doc/dm-function-naming-logic.R                           |only
 dm-0.1.2/dm/inst/doc/dm-function-naming-logic.Rmd                         |only
 dm-0.1.2/dm/inst/doc/dm-function-naming-logic.html                        |only
 dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.R             |only
 dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.Rmd           |only
 dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.html          |only
 dm-0.1.2/dm/inst/doc/dm-joining.R                                         |only
 dm-0.1.2/dm/inst/doc/dm-joining.Rmd                                       |only
 dm-0.1.2/dm/inst/doc/dm-joining.html                                      |only
 dm-0.1.2/dm/inst/doc/dm-low-level.R                                       |only
 dm-0.1.2/dm/inst/doc/dm-low-level.Rmd                                     |only
 dm-0.1.2/dm/inst/doc/dm-low-level.html                                    |only
 dm-0.1.2/dm/inst/doc/dm-version-migration-guide.R                         |only
 dm-0.1.2/dm/inst/doc/dm-version-migration-guide.Rmd                       |only
 dm-0.1.2/dm/inst/doc/dm-version-migration-guide.html                      |only
 dm-0.1.2/dm/inst/doc/dm-visualization.R                                   |only
 dm-0.1.2/dm/inst/doc/dm-visualization.Rmd                                 |only
 dm-0.1.2/dm/inst/doc/dm-visualization.html                                |only
 dm-0.1.2/dm/inst/doc/dm-zoom-to-table.R                                   |only
 dm-0.1.2/dm/inst/doc/dm-zoom-to-table.Rmd                                 |only
 dm-0.1.2/dm/inst/doc/dm-zoom-to-table.html                                |only
 dm-0.1.2/dm/man/figures/README-draw-1.png                                 |only
 dm-0.1.2/dm/tests/testthat/out/decompose-table-data-ts.txt                |only
 dm-0.1.2/dm/tests/testthat/out/reunite-parent-child-data-ts.txt           |only
 dm-0.1.2/dm/tests/testthat/out/reunite-parent-child_from_list-data-ts.txt |only
 dm-0.1.2/dm/vignettes/dm-class-and-basic-operations.Rmd                   |only
 dm-0.1.2/dm/vignettes/dm-db.Rmd                                           |only
 dm-0.1.2/dm/vignettes/dm-df.Rmd                                           |only
 dm-0.1.2/dm/vignettes/dm-filtering.Rmd                                    |only
 dm-0.1.2/dm/vignettes/dm-function-naming-logic.Rmd                        |only
 dm-0.1.2/dm/vignettes/dm-introduction-relational-data-models.Rmd          |only
 dm-0.1.2/dm/vignettes/dm-joining.Rmd                                      |only
 dm-0.1.2/dm/vignettes/dm-low-level.Rmd                                    |only
 dm-0.1.2/dm/vignettes/dm-version-migration-guide.Rmd                      |only
 dm-0.1.2/dm/vignettes/dm-visualization.Rmd                                |only
 dm-0.1.2/dm/vignettes/dm-zoom-to-table.Rmd                                |only
 dm-0.1.3/dm/DESCRIPTION                                                   |   18 
 dm-0.1.3/dm/MD5                                                           |  182 +-
 dm-0.1.3/dm/NEWS.md                                                       |   34 
 dm-0.1.3/dm/R/db-helpers.R                                                |    5 
 dm-0.1.3/dm/R/dm.R                                                        |    2 
 dm-0.1.3/dm/R/dplyr.R                                                     |    2 
 dm-0.1.3/dm/R/draw-dm.R                                                   |    3 
 dm-0.1.3/dm/R/error-helpers.R                                             |    8 
 dm-0.1.3/dm/R/filter-helpers.R                                            |    2 
 dm-0.1.3/dm/R/flatten.R                                                   |    6 
 dm-0.1.3/dm/R/foreign-keys.R                                              |    2 
 dm-0.1.3/dm/R/format.R                                                    |   14 
 dm-0.1.3/dm/README.md                                                     |  470 +-----
 dm-0.1.3/dm/build/dm.pdf                                                  |binary
 dm-0.1.3/dm/build/vignette.rds                                            |binary
 dm-0.1.3/dm/inst/WORDLIST                                                 |only
 dm-0.1.3/dm/inst/doc/dm.R                                                 |  150 --
 dm-0.1.3/dm/inst/doc/dm.Rmd                                               |  302 ++--
 dm-0.1.3/dm/inst/doc/dm.html                                              |  676 +++-------
 dm-0.1.3/dm/inst/doc/howto-dm-db.R                                        |only
 dm-0.1.3/dm/inst/doc/howto-dm-db.Rmd                                      |only
 dm-0.1.3/dm/inst/doc/howto-dm-db.html                                     |only
 dm-0.1.3/dm/inst/doc/howto-dm-df.R                                        |only
 dm-0.1.3/dm/inst/doc/howto-dm-df.Rmd                                      |only
 dm-0.1.3/dm/inst/doc/howto-dm-df.html                                     |only
 dm-0.1.3/dm/inst/doc/howto-dm-theory.R                                    |only
 dm-0.1.3/dm/inst/doc/howto-dm-theory.Rmd                                  |only
 dm-0.1.3/dm/inst/doc/howto-dm-theory.html                                 |only
 dm-0.1.3/dm/inst/doc/tech-dm-cdm.R                                        |only
 dm-0.1.3/dm/inst/doc/tech-dm-cdm.Rmd                                      |only
 dm-0.1.3/dm/inst/doc/tech-dm-cdm.html                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-class.R                                      |only
 dm-0.1.3/dm/inst/doc/tech-dm-class.Rmd                                    |only
 dm-0.1.3/dm/inst/doc/tech-dm-class.html                                   |only
 dm-0.1.3/dm/inst/doc/tech-dm-draw.R                                       |only
 dm-0.1.3/dm/inst/doc/tech-dm-draw.Rmd                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-draw.html                                    |only
 dm-0.1.3/dm/inst/doc/tech-dm-filter.R                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-filter.Rmd                                   |only
 dm-0.1.3/dm/inst/doc/tech-dm-filter.html                                  |only
 dm-0.1.3/dm/inst/doc/tech-dm-join.R                                       |only
 dm-0.1.3/dm/inst/doc/tech-dm-join.Rmd                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-join.html                                    |only
 dm-0.1.3/dm/inst/doc/tech-dm-low-level.R                                  |only
 dm-0.1.3/dm/inst/doc/tech-dm-low-level.Rmd                                |only
 dm-0.1.3/dm/inst/doc/tech-dm-low-level.html                               |only
 dm-0.1.3/dm/inst/doc/tech-dm-naming.R                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-naming.Rmd                                   |only
 dm-0.1.3/dm/inst/doc/tech-dm-naming.html                                  |only
 dm-0.1.3/dm/inst/doc/tech-dm-zoom.R                                       |only
 dm-0.1.3/dm/inst/doc/tech-dm-zoom.Rmd                                     |only
 dm-0.1.3/dm/inst/doc/tech-dm-zoom.html                                    |only
 dm-0.1.3/dm/man/dm_add_fk.Rd                                              |    2 
 dm-0.1.3/dm/man/dm_draw.Rd                                                |    3 
 dm-0.1.3/dm/man/dm_flatten_to_tbl.Rd                                      |    2 
 dm-0.1.3/dm/man/dplyr_db.Rd                                               |    2 
 dm-0.1.3/dm/man/dplyr_table_manipulation.Rd                               |    2 
 dm-0.1.3/dm/man/figures/README-draw.svg                                   |only
 dm-0.1.3/dm/man/utils_table_manipulation.Rd                               |   13 
 dm-0.1.3/dm/tests/testthat/helper-skip.R                                  |    6 
 dm-0.1.3/dm/tests/testthat/helper-src.R                                   |   21 
 dm-0.1.3/dm/tests/testthat/out/commas.txt                                 |only
 dm-0.1.3/dm/tests/testthat/out/error-msgs.txt                             |    4 
 dm-0.1.3/dm/tests/testthat/test-dm.R                                      |   92 -
 dm-0.1.3/dm/tests/testthat/test-dplyr.R                                   |   60 
 dm-0.1.3/dm/tests/testthat/test-draw-dm.R                                 |    8 
 dm-0.1.3/dm/tests/testthat/test-error-helpers.R                           |    2 
 dm-0.1.3/dm/tests/testthat/test-examine-constraints.R                     |    5 
 dm-0.1.3/dm/tests/testthat/test-filter-dm.R                               |    1 
 dm-0.1.3/dm/tests/testthat/test-flatten.R                                 |    1 
 dm-0.1.3/dm/tests/testthat/test-format.R                                  |   22 
 dm-0.1.3/dm/tests/testthat/test-key-helpers.R                             |    3 
 dm-0.1.3/dm/tests/testthat/test-select-tbl.R                              |    1 
 dm-0.1.3/dm/tests/testthat/test-table-surgery.R                           |   51 
 dm-0.1.3/dm/tests/testthat/test-tidyr.R                                   |    1 
 dm-0.1.3/dm/tests/testthat/test-zoom.R                                    |    1 
 dm-0.1.3/dm/tests/testthat/test-zzx-deprecated.R                          |   13 
 dm-0.1.3/dm/vignettes/abstracts/user-2019.md                              |    3 
 dm-0.1.3/dm/vignettes/dm.Rmd                                              |  302 ++--
 dm-0.1.3/dm/vignettes/howto-dm-db.Rmd                                     |only
 dm-0.1.3/dm/vignettes/howto-dm-df.Rmd                                     |only
 dm-0.1.3/dm/vignettes/howto-dm-theory.Rmd                                 |only
 dm-0.1.3/dm/vignettes/setup/setup.R                                       |    2 
 dm-0.1.3/dm/vignettes/tech-dm-cdm.Rmd                                     |only
 dm-0.1.3/dm/vignettes/tech-dm-class.Rmd                                   |only
 dm-0.1.3/dm/vignettes/tech-dm-draw.Rmd                                    |only
 dm-0.1.3/dm/vignettes/tech-dm-filter.Rmd                                  |only
 dm-0.1.3/dm/vignettes/tech-dm-join.Rmd                                    |only
 dm-0.1.3/dm/vignettes/tech-dm-low-level.Rmd                               |only
 dm-0.1.3/dm/vignettes/tech-dm-naming.Rmd                                  |only
 dm-0.1.3/dm/vignettes/tech-dm-zoom.Rmd                                    |only
 dm-0.1.3/dm/vignettes/wip/dm-readme-old.Rmd                               |only
 140 files changed, 1060 insertions(+), 1439 deletions(-)

More information about dm at CRAN
Permanent link

Package BARIS updated to version 1.1.1 with previous version 1.1.0 dated 2020-04-20

Title: Access and Import Data from the French Open Data Portal
Description: Allows the user to access and import data from the rich French open data portal through the provided free API <https://doc.data.gouv.fr/api/reference/>. The portal is free, and no credential is required for extracting datasets.
Author: Mohamed El Fodil Ihaddaden
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>

Diff between BARIS versions 1.1.0 dated 2020-04-20 and 1.1.1 dated 2020-05-25

 DESCRIPTION               |   10 +--
 MD5                       |   32 +++++------
 NAMESPACE                 |    3 -
 NEWS.md                   |    4 +
 R/BARIS_explain.R         |   11 ++--
 R/BARIS_extract.R         |   21 +++----
 R/BARIS_resources.R       |   14 +++--
 R/BARIS_search.R          |   13 +++-
 README.md                 |  123 ++++++++++++++++++++++++----------------------
 build/vignette.rds        |binary
 man/BARIS_explain.Rd      |   42 +++++++--------
 man/BARIS_extract.Rd      |   44 ++++++++--------
 man/BARIS_home.Rd         |   36 ++++++-------
 man/BARIS_resources.Rd    |   42 +++++++--------
 man/BARIS_search.Rd       |   46 ++++++++---------
 man/BARIS_set_fromJSON.Rd |   44 ++++++++--------
 man/figures/Thumbs.db     |binary
 17 files changed, 254 insertions(+), 231 deletions(-)

More information about BARIS at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.