Title: Health-Economic Simulation Modeling and Decision Analysis
Description: A modular and computationally efficient R package for
parameterizing, simulating, and analyzing health-economic simulation
models. The package supports cohort discrete time state transition models
(Briggs et al. 1998) <doi:10.2165/00019053-199813040-00003>,
N-state partitioned survival models (Glasziou et al. 1990)
<doi:10.1002/sim.4780091106>, and individual-level continuous
time state transition models (Siebert et al. 2012) <doi:10.1016/j.jval.2012.06.014>,
encompassing both Markov (time-homogeneous and time-inhomogeneous) and
semi-Markov processes. Decision uncertainty from a cost-effectiveness analysis is
quantified with standard graphical and tabular summaries of a probabilistic
sensitivity analysis (Claxton et al. 2005, Barton et al. 2008) <doi:10.1002/hec.985>,
<doi:10.1111/j.1524-4733.2008.00358.x>. Use of C++ and data.table
make individual-patient simulation, probabilistic sensitivity analysis,
and incorporation of patient heterogeneity fast.
Author: Devin Incerti [aut, cre],
Jeroen P. Jansen [aut],
R Core Team [ctb] (hesim uses some slightly modified C functions from
base R)
Maintainer: Devin Incerti <devin.incerti@gmail.com>
Diff between hesim versions 0.2.3 dated 2020-03-17 and 0.3.0 dated 2020-05-25
hesim-0.2.3/hesim/R/input-data.R |only hesim-0.2.3/hesim/data/ctstm3_exdata.rda |only hesim-0.2.3/hesim/inst/doc/ctstm.R |only hesim-0.2.3/hesim/inst/doc/ctstm.Rmd |only hesim-0.2.3/hesim/inst/doc/ctstm.html |only hesim-0.2.3/hesim/inst/include/hesim/Rbase/sample.h |only hesim-0.2.3/hesim/man/ctstm3_exdata.Rd |only hesim-0.2.3/hesim/man/params_mean.Rd |only hesim-0.2.3/hesim/tests/manual |only hesim-0.2.3/hesim/tests/testthat/test-input-data.R |only hesim-0.2.3/hesim/vignettes/create-input-data.png |only hesim-0.2.3/hesim/vignettes/ctstm.Rmd |only hesim-0.2.3/hesim/vignettes/econ-eval-process.png |only hesim-0.2.3/hesim/vignettes/figures.pptx |only hesim-0.2.3/hesim/vignettes/input-data.png |only hesim-0.3.0/hesim/DESCRIPTION | 36 hesim-0.3.0/hesim/MD5 | 282 +- hesim-0.3.0/hesim/NAMESPACE | 29 hesim-0.3.0/hesim/R/RcppExports.R | 40 hesim-0.3.0/hesim/R/cea.R | 72 hesim-0.3.0/hesim/R/ctstm.R | 432 +++- hesim-0.3.0/hesim/R/data.R | 90 hesim-0.3.0/hesim/R/dtstm.R |only hesim-0.3.0/hesim/R/hesim.R | 7 hesim-0.3.0/hesim/R/hesim_data.R |only hesim-0.3.0/hesim/R/input_mats.R |only hesim-0.3.0/hesim/R/model-fits.R | 52 hesim-0.3.0/hesim/R/model_def.R |only hesim-0.3.0/hesim/R/outcomes.R | 91 hesim-0.3.0/hesim/R/params.R | 987 +++++++--- hesim-0.3.0/hesim/R/psm.R | 314 ++- hesim-0.3.0/hesim/R/rand.R | 46 hesim-0.3.0/hesim/R/statevals.R | 588 ++++-- hesim-0.3.0/hesim/R/utils.R | 143 + hesim-0.3.0/hesim/README.md | 11 hesim-0.3.0/hesim/build/vignette.rds |binary hesim-0.3.0/hesim/data/mstate3_exdata.rda |only hesim-0.3.0/hesim/data/multinom3_exdata.rda |only hesim-0.3.0/hesim/inst/doc/expected-values.Rmd |only hesim-0.3.0/hesim/inst/doc/expected-values.html |only hesim-0.3.0/hesim/inst/doc/getting-started.R |only hesim-0.3.0/hesim/inst/doc/getting-started.Rmd |only hesim-0.3.0/hesim/inst/doc/getting-started.html |only hesim-0.3.0/hesim/inst/doc/icea.R | 40 hesim-0.3.0/hesim/inst/doc/icea.Rmd | 16 hesim-0.3.0/hesim/inst/doc/icea.html | 902 ++++----- hesim-0.3.0/hesim/inst/doc/intro.R | 138 - 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hesim-0.3.0/hesim/src/ctstm.cpp | 61 hesim-0.3.0/hesim/src/dtstm.cpp |only hesim-0.3.0/hesim/src/indiv-ctstm.cpp | 180 + hesim-0.3.0/hesim/src/psm.cpp | 46 hesim-0.3.0/hesim/src/statevals.cpp | 32 hesim-0.3.0/hesim/src/test-ctstm.cpp | 8 hesim-0.3.0/hesim/src/test-obs_index.cpp | 22 hesim-0.3.0/hesim/src/test-survfuns.cpp | 6 hesim-0.3.0/hesim/src/test-utils.cpp | 6 hesim-0.3.0/hesim/src/utils.cpp | 1 hesim-0.3.0/hesim/tests/testthat/test-cpp-obs_index.R | 131 - hesim-0.3.0/hesim/tests/testthat/test-cpp-utils.R | 7 hesim-0.3.0/hesim/tests/testthat/test-ctstm.R | 81 hesim-0.3.0/hesim/tests/testthat/test-dtstm.R |only hesim-0.3.0/hesim/tests/testthat/test-hesim_data.R |only hesim-0.3.0/hesim/tests/testthat/test-input_mats.R |only hesim-0.3.0/hesim/tests/testthat/test-model_def.R |only hesim-0.3.0/hesim/tests/testthat/test-psm.R | 120 - hesim-0.3.0/hesim/tests/testthat/test-rand.R | 62 hesim-0.3.0/hesim/tests/testthat/test-statevals.R | 395 ++-- hesim-0.3.0/hesim/vignettes/expected-values.Rmd |only hesim-0.3.0/hesim/vignettes/figures.gslides |only hesim-0.3.0/hesim/vignettes/getting-started.Rmd |only hesim-0.3.0/hesim/vignettes/getting-started.png |only hesim-0.3.0/hesim/vignettes/icea.Rmd | 16 hesim-0.3.0/hesim/vignettes/illness-death.png |only hesim-0.3.0/hesim/vignettes/intro.Rmd | 136 - 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Title: Generalized Structure Component Analysis- Latent Class Analysis
& Latent Class Regression
Description: Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structured Component Analysis (GSCA). This is explained in Ryoo, Park, and Kim (2019) <doi:10.1007/s41237-019-00084-6>.
It estimates the parameters of latent class prevalence and item response probability in LCA with a single line comment. It also provides graphs of item response probabilities. In addition, the package enables to estimate the relationship between the prevalence and covariates.
Author: Jihoon Ryoo [aut],
Seohee Park [aut, cre],
Seoungeun Kim [aut],
heungsun Hwaung [aut]
Maintainer: Seohee Park <hee6904@gmail.com>
Diff between gscaLCA versions 0.0.2 dated 2019-10-09 and 0.0.3 dated 2020-05-25
gscaLCA-0.0.2/gscaLCA/README.md |only gscaLCA-0.0.3/gscaLCA/DESCRIPTION | 18 - gscaLCA-0.0.3/gscaLCA/MD5 | 37 +- gscaLCA-0.0.3/gscaLCA/NAMESPACE | 3 gscaLCA-0.0.3/gscaLCA/R/AddHealth.R | 21 - gscaLCA-0.0.3/gscaLCA/R/Boot_ft.R | 6 gscaLCA-0.0.3/gscaLCA/R/EST_ft.R | 32 +- gscaLCA-0.0.3/gscaLCA/R/RespItemProb.R | 3 gscaLCA-0.0.3/gscaLCA/R/TALIS.R | 12 gscaLCA-0.0.3/gscaLCA/R/al_gscaLCA.R | 106 ++++++- gscaLCA-0.0.3/gscaLCA/R/gscaLCA.R | 377 +++++++++++++++++++------- gscaLCA-0.0.3/gscaLCA/R/gscaLCR.R |only gscaLCA-0.0.3/gscaLCA/R/print_graph_gscaLCA.R | 4 gscaLCA-0.0.3/gscaLCA/R/print_gscaLCA.R | 73 ++++- gscaLCA-0.0.3/gscaLCA/R/summary.gscaLCA.R |only gscaLCA-0.0.3/gscaLCA/R/test_binomial.R |only gscaLCA-0.0.3/gscaLCA/R/test_multinomial.R |only gscaLCA-0.0.3/gscaLCA/data/AddHealth.rda |binary gscaLCA-0.0.3/gscaLCA/man/AddHealth.Rd | 78 ++--- gscaLCA-0.0.3/gscaLCA/man/TALIS.Rd | 18 - gscaLCA-0.0.3/gscaLCA/man/gscaLCA.Rd | 97 ++++-- gscaLCA-0.0.3/gscaLCA/man/gscaLCR.Rd |only gscaLCA-0.0.3/gscaLCA/man/summary.gscaLCA.Rd |only 23 files changed, 639 insertions(+), 246 deletions(-)
Title: R Client for BitMEX
Description: A client for cryptocurrency exchange BitMEX
<https://www.bitmex.com/> including the ability to obtain historic
trade data and place, edit and cancel orders. BitMEX's Testnet and
live API are both supported.
Author: Harry Fisher [cre, aut, cph]
Maintainer: Harry Fisher <harryfisher21@gmail.com>
Diff between bitmexr versions 0.2.3 dated 2020-05-02 and 0.3.0 dated 2020-05-25
bitmexr-0.2.3/bitmexr/vignettes/getting-started |only bitmexr-0.3.0/bitmexr/DESCRIPTION | 16 bitmexr-0.3.0/bitmexr/LICENSE | 4 bitmexr-0.3.0/bitmexr/MD5 | 172 bitmexr-0.3.0/bitmexr/NAMESPACE | 28 bitmexr-0.3.0/bitmexr/NEWS.md | 55 bitmexr-0.3.0/bitmexr/R/bitmexr.R | 60 bitmexr-0.3.0/bitmexr/R/bucket_trades.R | 477 bitmexr-0.3.0/bitmexr/R/delete_orders.R |only bitmexr-0.3.0/bitmexr/R/edit_order.R |only bitmexr-0.3.0/bitmexr/R/execute_order.R |only bitmexr-0.3.0/bitmexr/R/general.R |only bitmexr-0.3.0/bitmexr/R/map_bucket_trades.R | 506 bitmexr-0.3.0/bitmexr/R/map_trades.R | 457 bitmexr-0.3.0/bitmexr/R/trades.R | 465 bitmexr-0.3.0/bitmexr/R/utils.R | 213 bitmexr-0.3.0/bitmexr/README.md | 205 bitmexr-0.3.0/bitmexr/build/vignette.rds |binary bitmexr-0.3.0/bitmexr/inst/doc/authentication.R |only bitmexr-0.3.0/bitmexr/inst/doc/authentication.Rmd |only bitmexr-0.3.0/bitmexr/inst/doc/authentication.html |only bitmexr-0.3.0/bitmexr/inst/doc/getting-started.R | 92 bitmexr-0.3.0/bitmexr/inst/doc/getting-started.Rmd | 195 bitmexr-0.3.0/bitmexr/inst/doc/getting-started.html | 701 bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.R |only bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.Rmd |only bitmexr-0.3.0/bitmexr/inst/doc/placing-orders.html |only bitmexr-0.3.0/bitmexr/inst/doc/trade-data.R |only bitmexr-0.3.0/bitmexr/inst/doc/trade-data.Rmd |only bitmexr-0.3.0/bitmexr/inst/doc/trade-data.html |only bitmexr-0.3.0/bitmexr/man/available_symbols.Rd | 40 bitmexr-0.3.0/bitmexr/man/bitmexr.Rd | 4 bitmexr-0.3.0/bitmexr/man/bucket_trades.Rd | 182 bitmexr-0.3.0/bitmexr/man/cancel_all_orders.Rd |only bitmexr-0.3.0/bitmexr/man/cancel_order.Rd |only bitmexr-0.3.0/bitmexr/man/edit_order.Rd |only bitmexr-0.3.0/bitmexr/man/get_bitmex.Rd |only bitmexr-0.3.0/bitmexr/man/map_bucket_trades.Rd | 183 bitmexr-0.3.0/bitmexr/man/map_trades.Rd | 163 bitmexr-0.3.0/bitmexr/man/place_order.Rd |only bitmexr-0.3.0/bitmexr/man/post_bitmex.Rd |only bitmexr-0.3.0/bitmexr/man/tn_bucket_trades.Rd |only bitmexr-0.3.0/bitmexr/man/tn_cancel_all_orders.Rd |only bitmexr-0.3.0/bitmexr/man/tn_cancel_order.Rd |only bitmexr-0.3.0/bitmexr/man/tn_edit_order.Rd |only bitmexr-0.3.0/bitmexr/man/tn_get_bitmex.Rd |only bitmexr-0.3.0/bitmexr/man/tn_map_bucket_trades.Rd |only bitmexr-0.3.0/bitmexr/man/tn_map_trades.Rd |only bitmexr-0.3.0/bitmexr/man/tn_place_order.Rd |only bitmexr-0.3.0/bitmexr/man/tn_post_bitmex.Rd |only bitmexr-0.3.0/bitmexr/man/tn_trades.Rd |only bitmexr-0.3.0/bitmexr/man/trades.Rd | 171 bitmexr-0.3.0/bitmexr/man/valid_dates.Rd | 50 bitmexr-0.3.0/bitmexr/tests/testthat.R | 10 bitmexr-0.3.0/bitmexr/tests/testthat/helper.R | 2 bitmexr-0.3.0/bitmexr/tests/testthat/test-bucket-trades.R | 96 bitmexr-0.3.0/bitmexr/tests/testthat/test-edit_order.R |only bitmexr-0.3.0/bitmexr/tests/testthat/test-execute_order.R |only bitmexr-0.3.0/bitmexr/tests/testthat/test-map-bucket-trades.R | 81 bitmexr-0.3.0/bitmexr/tests/testthat/test-map-trades.R | 66 bitmexr-0.3.0/bitmexr/tests/testthat/test-trades.R | 76 bitmexr-0.3.0/bitmexr/tests/testthat/test-utils.R | 50 bitmexr-0.3.0/bitmexr/tests/testthat/testnet.bitmex.com |only bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/bitcoincharts.json | 64 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-1e0683.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-376c05.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-6103f3.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-6b5a6b.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-7610cc.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-7d6749.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-82a42d.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-999802.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9a74b7.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9ae38e.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-9b518d.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-a0c058.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-e6f0f4.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-e75f9a.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-eecdfc.json |24004 ++++---- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-efc252.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-f6e75b.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade-f91a9b.json | 28 bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-564677.json |30004 +++++----- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-5f8fac.json |19834 +++--- bitmexr-0.3.0/bitmexr/tests/testthat/www.bitmex.com/api/v1/trade/bucketed-7c9bba.json |30004 +++++----- bitmexr-0.3.0/bitmexr/vignettes/authentication.Rmd |only bitmexr-0.3.0/bitmexr/vignettes/getting-started.Rmd | 195 bitmexr-0.3.0/bitmexr/vignettes/placing-orders.Rmd |only bitmexr-0.3.0/bitmexr/vignettes/trade-data |only bitmexr-0.3.0/bitmexr/vignettes/trade-data.Rmd |only 90 files changed, 114836 insertions(+), 114445 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from 'SCOPUS' (<http://scopus.com>),
'Clarivate Analytics Web of Science' (<http://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'Cochrane Library' (<http://www.cochranelibrary.com/>)
and 'PubMed' (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 3.0.0 dated 2020-04-16 and 3.0.1 dated 2020-05-25
bibliometrix-3.0.0/bibliometrix/inst/biblioshiny/rsconnect |only bibliometrix-3.0.1/bibliometrix/DESCRIPTION | 10 bibliometrix-3.0.1/bibliometrix/MD5 | 101 bibliometrix-3.0.1/bibliometrix/NAMESPACE | 3 bibliometrix-3.0.1/bibliometrix/NEWS | 11 bibliometrix-3.0.1/bibliometrix/R/authorProdOverTime.R | 164 bibliometrix-3.0.1/bibliometrix/R/bib2df.R | 359 bibliometrix-3.0.1/bibliometrix/R/biblioNetwork.R | 456 bibliometrix-3.0.1/bibliometrix/R/convert2df.R | 431 bibliometrix-3.0.1/bibliometrix/R/dominance.R | 2 bibliometrix-3.0.1/bibliometrix/R/histNetwork.R | 533 bibliometrix-3.0.1/bibliometrix/R/histPlot.R | 8 bibliometrix-3.0.1/bibliometrix/R/isi2df.R | 130 bibliometrix-3.0.1/bibliometrix/R/metaTagExtraction.R | 944 - bibliometrix-3.0.1/bibliometrix/R/networkPlot.R | 7 bibliometrix-3.0.1/bibliometrix/R/pubmed2df.R | 142 bibliometrix-3.0.1/bibliometrix/R/tableTag.R | 79 bibliometrix-3.0.1/bibliometrix/R/zzz.R | 1 bibliometrix-3.0.1/bibliometrix/build/partial.rdb |binary bibliometrix-3.0.1/bibliometrix/build/vignette.rds |binary bibliometrix-3.0.1/bibliometrix/data/biblio.rda |binary bibliometrix-3.0.1/bibliometrix/data/biblio_df.rda |binary bibliometrix-3.0.1/bibliometrix/data/bibtag.rda |binary bibliometrix-3.0.1/bibliometrix/data/countries.rda |binary bibliometrix-3.0.1/bibliometrix/data/datalist | 22 bibliometrix-3.0.1/bibliometrix/data/garfield.rda |binary bibliometrix-3.0.1/bibliometrix/data/isiCollection.rda |binary bibliometrix-3.0.1/bibliometrix/data/management.rda |binary bibliometrix-3.0.1/bibliometrix/data/scientometrics.rda |binary bibliometrix-3.0.1/bibliometrix/data/scientometrics_text.rda |binary bibliometrix-3.0.1/bibliometrix/data/scopusCollection.rda |binary bibliometrix-3.0.1/bibliometrix/data/stopwords.rda |binary bibliometrix-3.0.1/bibliometrix/inst/biblioshiny/server.R | 7291 +++++----- bibliometrix-3.0.1/bibliometrix/inst/biblioshiny/ui.R | 12 bibliometrix-3.0.1/bibliometrix/inst/doc/Data-Importing-and-Converting.R | 150 bibliometrix-3.0.1/bibliometrix/inst/doc/Data-Importing-and-Converting.html | 1606 +- bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.R | 404 bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.Rmd | 2 bibliometrix-3.0.1/bibliometrix/inst/doc/bibliometrix-vignette.html | 2799 +-- bibliometrix-3.0.1/bibliometrix/man/biblio.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/biblio_df.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/bibliometrix-package.Rd | 29 bibliometrix-3.0.1/bibliometrix/man/bibtag.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/countries.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/garfield.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/isiCollection.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/management.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/scientometrics.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/scientometrics_text.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/scopusCollection.Rd | 6 bibliometrix-3.0.1/bibliometrix/man/stopwords.Rd | 4 bibliometrix-3.0.1/bibliometrix/vignettes/bibliometrix-vignette.Rmd | 2 52 files changed, 7933 insertions(+), 7829 deletions(-)
Title: A Graph-Based Test for Comparing Multivariate Distributions in
the Multi Sample Framework
Description: We introduce a nonparametric, graphical test based on optimal matching for assessing whether multiple unknown multivariate probability distributions are equal. This method is consistent, and does not make any distributional assumptions on the data. Our procedure combines data that belong to different classes or groups to create a graph on the pooled data, and then utilizes the number of edges connecting data points from different classes to examine equality of distributions among the classes. The functions available through this package implement the work described here: <arXiv:1906.04776>.
Author: Somabha Mukherjee <somabha@wharton.upenn.edu>
Divyansh Agarwal <divyansh.agarwal@pennmedicine.upenn.edu>
Bhaswar Bhattacharya <bhaswar@wharton.upenn.edu>
Nancy R. Zhang <nzh@wharton.upenn.edu>
Maintainer: Divyansh Agarwal <divyansh.agarwal@pennmedicine.upenn.edu>
Diff between multicross versions 2.0.0 dated 2019-09-23 and 2.1.0 dated 2020-05-25
multicross-2.0.0/multicross/man/matchpar.Rd |only multicross-2.0.0/multicross/man/scPath.Rd |only multicross-2.1.0/multicross/DESCRIPTION | 13 ++-- multicross-2.1.0/multicross/MD5 | 8 +-- multicross-2.1.0/multicross/NAMESPACE | 8 --- multicross-2.1.0/multicross/R/multicross.R | 73 ---------------------------- 6 files changed, 9 insertions(+), 93 deletions(-)
Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for identification of B cell clones from
Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main
functions are included (identicalClones, hierarchicalClones, and spectralClones)
that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins)
which share the same V gene, J gene and junction length.
Nouri N and Kleinstein SH (2018) <doi: 10.1093/bioinformatics/bty235>.
Nouri N and Kleinstein SH (2019) <doi: 10.1101/788620>.
Gupta NT, et al. (2017) <doi: 10.4049/jimmunol.1601850>.
Author: Nima Nouri [aut],
Edel Aron [ctb],
Jason Vander Heiden [aut, cre],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@gmail.com>
Diff between scoper versions 1.0.0 dated 2020-05-16 and 1.0.1 dated 2020-05-25
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NAMESPACE | 25 ++++--------------------- NEWS.md | 7 +++++++ R/Functions.R | 19 +++++++++++++------ R/Scoper.R | 26 ++++++++++++-------------- inst/doc/Scoper-Vignette.pdf |binary 7 files changed, 49 insertions(+), 54 deletions(-)
Title: Penalized Ordinal Regression
Description: Fits ordinal regression models with elastic net penalty.
Supported model families include cumulative probability, stopping ratio,
continuation ratio, and adjacent category. These families are a subset of
vector glm's which belong to a model class we call the elementwise link
multinomial-ordinal (ELMO) class. Each family in this class links a vector
of covariates to a vector of class probabilities. Each of these families
has a parallel form, which is appropriate for ordinal response data, as
well as a nonparallel form that is appropriate for an unordered categorical
response, or as a more flexible model for ordinal data. The parallel model
has a single set of coefficients, whereas the nonparallel model has a set of
coefficients for each response category except the baseline category. It is
also possible to fit a model with both parallel and nonparallel terms, which
we call the semi-parallel model. The semi-parallel model has the flexibility
of the nonparallel model, but the elastic net penalty shrinks it toward the
parallel model. For details, refer to Wurm, Hanlon, and Rathouz (2017)
<arXiv:1706.05003>.
Author: Michael Wurm [aut, cre],
Paul Rathouz [aut],
Bret Hanlon [aut]
Maintainer: Michael Wurm <wurm@uwalumni.com>
Diff between ordinalNet versions 2.7 dated 2020-01-10 and 2.8 dated 2020-05-25
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test-ordinalNet.R | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods to interpret multiple
linear regression and canonical correlation results including beta weights,structure coefficients,
validity coefficients, product measures, relative weights, all-possible-subsets regression,
dominance analysis, commonality analysis, and adjusted effect sizes.
Author: Kim Nimon [aut, cre],
Fred Oswald [aut],
J. Klye Roberts [aut]
Maintainer: Kim Nimon <kim.nimon@gmail.com>
Diff between yhat versions 2.0-0 dated 2013-09-15 and 2.0-1 dated 2020-05-25
DESCRIPTION | 18 +++++++++++------- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 3 +++ R/booteval.yhat.r | 13 ++++++++----- R/canonCommonality.R | 41 +++++++++++++++++++++++------------------ man/aps.Rd | 6 +++--- man/boot.yhat.Rd | 7 ++++--- man/booteval.yhat.rd | 7 ++++--- man/calc.yhat.rd | 6 ++++-- man/canonCommonality.Rd | 10 +++++----- man/commonality.rd | 5 +++-- man/commonalityCoefficients.Rd | 6 +++--- man/dombin.rd | 5 +++-- man/dominance.rd | 5 +++-- man/effect.size.Rd | 8 ++++---- man/plotCI.yhat.rd | 7 ++++--- man/regr.Rd | 8 ++++---- man/rlw.rd | 6 ++++-- man/yhat-package.Rd | 4 ++-- 19 files changed, 113 insertions(+), 88 deletions(-)
Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Author: Timothy C. Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>),
Gillespie Nathan [ctb],
Brenton Wiernik [ctb],
Joshua N. Pritikin [ctb],
Michael C. Neale [ctb],
Hermine Maes [ctb]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 3.0.6 dated 2020-02-06 and 4.0.0 dated 2020-05-25
umx-3.0.6/umx/R/umxIPnew.R |only umx-3.0.6/umx/R/umx_build_umxACEcov_fixed.R |only umx-3.0.6/umx/R/umx_nice_data.R |only umx-3.0.6/umx/man/figures/measurement_invariance.graffle |only umx-3.0.6/umx/man/umxACE_cov_fixed.Rd |only umx-3.0.6/umx/man/umx_object_as_str.Rd |only umx-3.0.6/umx/man/xmu_assemble_twin_supermodel.Rd |only umx-3.0.6/umx/man/xmu_make_top_twin.Rd |only umx-3.0.6/umx/tests |only umx-4.0.0/umx/DESCRIPTION | 16 umx-4.0.0/umx/MD5 | 600 ++--- umx-4.0.0/umx/NAMESPACE | 22 umx-4.0.0/umx/NEWS.md | 103 + umx-4.0.0/umx/R/build_run_modify.R | 1473 +++++++++----- umx-4.0.0/umx/R/datasets.R | 252 +- umx-4.0.0/umx/R/deprecated.R | 62 umx-4.0.0/umx/R/fit_and_reporting.R | 1017 +++++----- umx-4.0.0/umx/R/lavanify2ram.R | 4 umx-4.0.0/umx/R/misc_and_utility.R | 1519 +++++++++------ umx-4.0.0/umx/R/tmx.R | 20 umx-4.0.0/umx/R/umxDoC.R | 644 +++--- umx-4.0.0/umx/R/umxDoCbyPath.R |only umx-4.0.0/umx/R/umxPower.R | 32 umx-4.0.0/umx/R/umx_build_high_level_models.R | 2 umx-4.0.0/umx/R/umx_build_polychoricMatrix3.R | 2 umx-4.0.0/umx/R/umx_build_umxACEv.R | 261 +- umx-4.0.0/umx/R/umx_build_umxGxEbiv.R | 93 umx-4.0.0/umx/R/umx_build_umxSexLim.R | 12 umx-4.0.0/umx/R/umx_build_umxSimplex.R | 6 umx-4.0.0/umx/R/umx_fit_umxFitIndices.R | 664 +++++- umx-4.0.0/umx/R/xmu.R | 428 +++- umx-4.0.0/umx/R/xmu_make_top_twin_models.R | 774 +++++-- umx-4.0.0/umx/README.md | 29 umx-4.0.0/umx/data/docData.rda |only umx-4.0.0/umx/inst/WORDLIST | 63 umx-4.0.0/umx/man/Fischbein_wt.Rd | 16 umx-4.0.0/umx/man/FishersMethod.Rd | 32 umx-4.0.0/umx/man/GFF.Rd | 118 - umx-4.0.0/umx/man/RMSEA.MxModel.Rd | 27 umx-4.0.0/umx/man/RMSEA.Rd | 27 umx-4.0.0/umx/man/RMSEA.summary.mxmodel.Rd | 27 umx-4.0.0/umx/man/SE_from_p.Rd | 23 umx-4.0.0/umx/man/deg2rad.Rd | 3 umx-4.0.0/umx/man/dl_from_dropbox.Rd | 12 umx-4.0.0/umx/man/docData.Rd |only umx-4.0.0/umx/man/extractAIC.MxModel.Rd | 26 umx-4.0.0/umx/man/figures/GxE.pdf |binary umx-4.0.0/umx/man/figures/GxE.png |binary umx-4.0.0/umx/man/figures/GxEbiv.pdf |binary umx-4.0.0/umx/man/figures/GxEbiv.png |binary umx-4.0.0/umx/man/figures/TSLS.pdf |binary umx-4.0.0/umx/man/figures/TSLS.png |binary umx-4.0.0/umx/man/figures/umx_help_figures.graffle |binary umx-4.0.0/umx/man/install.OpenMx.Rd | 22 umx-4.0.0/umx/man/iqdat.Rd | 24 umx-4.0.0/umx/man/loadings.MxModel.Rd | 16 umx-4.0.0/umx/man/loadings.Rd | 27 umx-4.0.0/umx/man/oddsratio.Rd | 23 umx-4.0.0/umx/man/plot.MxLISRELModel.Rd | 22 umx-4.0.0/umx/man/plot.MxModel.Rd | 26 umx-4.0.0/umx/man/plot.MxModelTwinMaker.Rd |only umx-4.0.0/umx/man/power.ACE.test.Rd | 44 umx-4.0.0/umx/man/qm.Rd | 22 umx-4.0.0/umx/man/rad2deg.Rd | 3 umx-4.0.0/umx/man/reliability.Rd | 23 umx-4.0.0/umx/man/residuals.MxModel.Rd | 27 umx-4.0.0/umx/man/tmx_genotypic_effect.Rd | 8 umx-4.0.0/umx/man/tmx_is.identified.Rd | 5 umx-4.0.0/umx/man/tmx_show.Rd | 12 umx-4.0.0/umx/man/umx-deprecated.Rd | 60 umx-4.0.0/umx/man/umx.Rd | 517 ++--- umx-4.0.0/umx/man/umxACE.Rd | 128 - umx-4.0.0/umx/man/umxACEcov.Rd | 38 umx-4.0.0/umx/man/umxACEv.Rd | 27 umx-4.0.0/umx/man/umxAPA.Rd | 34 umx-4.0.0/umx/man/umxAlgebra.Rd | 36 umx-4.0.0/umx/man/umxBrownie.Rd | 22 umx-4.0.0/umx/man/umxCI.Rd | 28 umx-4.0.0/umx/man/umxCI_boot.Rd | 27 umx-4.0.0/umx/man/umxCP.Rd | 57 umx-4.0.0/umx/man/umxCompare.Rd | 28 umx-4.0.0/umx/man/umxConfint.Rd | 36 umx-4.0.0/umx/man/umxCov2cor.Rd | 23 umx-4.0.0/umx/man/umxDiagnose.Rd | 7 umx-4.0.0/umx/man/umxDoC.Rd | 94 umx-4.0.0/umx/man/umxDoCp.Rd |only umx-4.0.0/umx/man/umxEFA.Rd | 5 umx-4.0.0/umx/man/umxEquate.Rd | 12 umx-4.0.0/umx/man/umxExpCov.Rd | 28 umx-4.0.0/umx/man/umxExpMeans.Rd | 27 umx-4.0.0/umx/man/umxFactor.Rd | 34 umx-4.0.0/umx/man/umxFactorScores.Rd | 15 umx-4.0.0/umx/man/umxFitIndices.Rd | 104 - umx-4.0.0/umx/man/umxFixAll.Rd | 12 umx-4.0.0/umx/man/umxGetParameters.Rd | 15 umx-4.0.0/umx/man/umxGxE.Rd | 47 umx-4.0.0/umx/man/umxGxE_window.Rd | 41 umx-4.0.0/umx/man/umxGxEbiv.Rd | 27 umx-4.0.0/umx/man/umxHetCor.Rd | 57 umx-4.0.0/umx/man/umxIP.Rd | 38 umx-4.0.0/umx/man/umxJiggle.Rd | 8 umx-4.0.0/umx/man/umxLabel.Rd | 8 umx-4.0.0/umx/man/umxLav2RAM.Rd | 22 umx-4.0.0/umx/man/umxMI.Rd | 15 umx-4.0.0/umx/man/umxMatrix.Rd | 14 umx-4.0.0/umx/man/umxMendelianRandomization.Rd | 5 umx-4.0.0/umx/man/umxModel.Rd | 125 - umx-4.0.0/umx/man/umxModify.Rd | 31 umx-4.0.0/umx/man/umxParameters.Rd | 28 umx-4.0.0/umx/man/umxPath.Rd | 67 umx-4.0.0/umx/man/umxPlotACE.Rd | 27 umx-4.0.0/umx/man/umxPlotACEcov.Rd | 23 umx-4.0.0/umx/man/umxPlotACEv.Rd | 50 umx-4.0.0/umx/man/umxPlotCP.Rd | 51 umx-4.0.0/umx/man/umxPlotDoC.Rd | 98 umx-4.0.0/umx/man/umxPlotGxE.Rd | 23 umx-4.0.0/umx/man/umxPlotGxEbiv.Rd | 19 umx-4.0.0/umx/man/umxPlotIP.Rd | 20 umx-4.0.0/umx/man/umxPlotSexLim.Rd | 19 umx-4.0.0/umx/man/umxPlotSimplex.Rd | 19 umx-4.0.0/umx/man/umxPower.Rd | 5 umx-4.0.0/umx/man/umxRAM.Rd | 52 umx-4.0.0/umx/man/umxRAM2Lav.Rd | 22 umx-4.0.0/umx/man/umxReduce.Rd | 47 umx-4.0.0/umx/man/umxReduceACE.Rd | 34 umx-4.0.0/umx/man/umxReduceGxE.Rd | 31 umx-4.0.0/umx/man/umxRenameMatrix.Rd |only umx-4.0.0/umx/man/umxRotate.MxModelCP.Rd | 24 umx-4.0.0/umx/man/umxRotate.Rd | 28 umx-4.0.0/umx/man/umxRun.Rd | 19 umx-4.0.0/umx/man/umxSetParameters.Rd | 12 umx-4.0.0/umx/man/umxSexLim.Rd | 29 umx-4.0.0/umx/man/umxSimplex.Rd | 29 umx-4.0.0/umx/man/umxSummarizeTwinData.Rd | 46 umx-4.0.0/umx/man/umxSummary.MxModel.Rd | 84 umx-4.0.0/umx/man/umxSummary.Rd | 14 umx-4.0.0/umx/man/umxSummaryACE.Rd | 30 umx-4.0.0/umx/man/umxSummaryACEcov.Rd | 43 umx-4.0.0/umx/man/umxSummaryACEv.Rd | 30 umx-4.0.0/umx/man/umxSummaryCP.Rd | 39 umx-4.0.0/umx/man/umxSummaryDoC.Rd | 84 umx-4.0.0/umx/man/umxSummaryGxE.Rd | 30 umx-4.0.0/umx/man/umxSummaryGxEbiv.Rd | 41 umx-4.0.0/umx/man/umxSummaryIP.Rd | 40 umx-4.0.0/umx/man/umxSummarySexLim.Rd | 30 umx-4.0.0/umx/man/umxSummarySimplex.Rd | 30 umx-4.0.0/umx/man/umxSuperModel.Rd | 26 umx-4.0.0/umx/man/umxThresholdMatrix.Rd | 76 umx-4.0.0/umx/man/umxTwinMaker.Rd |only umx-4.0.0/umx/man/umxUnexplainedCausalNexus.Rd | 11 umx-4.0.0/umx/man/umxValues.Rd | 8 umx-4.0.0/umx/man/umxVersion.Rd | 22 umx-4.0.0/umx/man/umxWeightedAIC.Rd | 23 umx-4.0.0/umx/man/umx_APA_pval.Rd | 125 - umx-4.0.0/umx/man/umx_aggregate.Rd | 16 umx-4.0.0/umx/man/umx_apply.Rd | 29 umx-4.0.0/umx/man/umx_array_shift.Rd | 22 umx-4.0.0/umx/man/umx_as_numeric.Rd | 34 umx-4.0.0/umx/man/umx_check.Rd | 44 umx-4.0.0/umx/man/umx_check_OS.Rd | 26 umx-4.0.0/umx/man/umx_check_model.Rd | 26 umx-4.0.0/umx/man/umx_check_names.Rd | 55 umx-4.0.0/umx/man/umx_check_parallel.Rd | 30 umx-4.0.0/umx/man/umx_cont_2_quantiles.Rd | 34 umx-4.0.0/umx/man/umx_cor.Rd | 24 umx-4.0.0/umx/man/umx_explode.Rd | 15 umx-4.0.0/umx/man/umx_explode_twin_names.Rd | 18 umx-4.0.0/umx/man/umx_file_load_pseudo.Rd |only umx-4.0.0/umx/man/umx_find_object.Rd | 22 umx-4.0.0/umx/man/umx_fun_mean_sd.Rd | 127 - umx-4.0.0/umx/man/umx_get_bracket_addresses.Rd | 125 - umx-4.0.0/umx/man/umx_get_checkpoint.Rd | 30 umx-4.0.0/umx/man/umx_get_options.Rd | 30 umx-4.0.0/umx/man/umx_grep.Rd | 15 umx-4.0.0/umx/man/umx_has_CIs.Rd | 30 umx-4.0.0/umx/man/umx_has_been_run.Rd | 26 umx-4.0.0/umx/man/umx_has_means.Rd | 26 umx-4.0.0/umx/man/umx_has_square_brackets.Rd | 26 umx-4.0.0/umx/man/umx_is_MxData.Rd | 26 umx-4.0.0/umx/man/umx_is_MxMatrix.Rd | 26 umx-4.0.0/umx/man/umx_is_MxModel.Rd | 26 umx-4.0.0/umx/man/umx_is_RAM.Rd | 27 umx-4.0.0/umx/man/umx_is_class.Rd | 11 umx-4.0.0/umx/man/umx_is_cov.Rd | 27 umx-4.0.0/umx/man/umx_is_endogenous.Rd | 11 umx-4.0.0/umx/man/umx_is_exogenous.Rd | 11 umx-4.0.0/umx/man/umx_is_numeric.Rd | 11 umx-4.0.0/umx/man/umx_is_ordered.Rd | 39 umx-4.0.0/umx/man/umx_long2wide.Rd | 58 umx-4.0.0/umx/man/umx_lower2full.Rd | 34 umx-4.0.0/umx/man/umx_make.Rd | 125 - umx-4.0.0/umx/man/umx_make_MR_data.Rd | 34 umx-4.0.0/umx/man/umx_make_TwinData.Rd | 53 umx-4.0.0/umx/man/umx_make_fake_data.Rd | 34 umx-4.0.0/umx/man/umx_make_raw_from_cov.Rd | 34 umx-4.0.0/umx/man/umx_make_sql_from_excel.Rd | 12 umx-4.0.0/umx/man/umx_make_twin_data_nice.Rd | 37 umx-4.0.0/umx/man/umx_means.Rd | 24 umx-4.0.0/umx/man/umx_move_file.Rd | 26 umx-4.0.0/umx/man/umx_msg.Rd | 23 umx-4.0.0/umx/man/umx_names.Rd | 31 umx-4.0.0/umx/man/umx_open.Rd | 13 umx-4.0.0/umx/man/umx_open_CRAN_page.Rd | 22 umx-4.0.0/umx/man/umx_pad.Rd | 23 umx-4.0.0/umx/man/umx_paste_names.Rd | 21 umx-4.0.0/umx/man/umx_polychoric.Rd | 34 umx-4.0.0/umx/man/umx_polypairwise.Rd | 34 umx-4.0.0/umx/man/umx_polytriowise.Rd | 34 umx-4.0.0/umx/man/umx_print.Rd | 43 umx-4.0.0/umx/man/umx_r_test.Rd | 24 umx-4.0.0/umx/man/umx_read_lower.Rd | 34 umx-4.0.0/umx/man/umx_rename.Rd | 74 umx-4.0.0/umx/man/umx_rename_file.Rd | 27 umx-4.0.0/umx/man/umx_reorder.Rd | 35 umx-4.0.0/umx/man/umx_residualize.Rd | 12 umx-4.0.0/umx/man/umx_rot.Rd | 20 umx-4.0.0/umx/man/umx_round.Rd | 24 umx-4.0.0/umx/man/umx_scale.Rd | 24 umx-4.0.0/umx/man/umx_scale_wide_twin_data.Rd | 12 umx-4.0.0/umx/man/umx_score_scale.Rd | 68 umx-4.0.0/umx/man/umx_select_valid.Rd | 34 umx-4.0.0/umx/man/umx_set_auto_plot.Rd | 30 umx-4.0.0/umx/man/umx_set_auto_run.Rd | 30 umx-4.0.0/umx/man/umx_set_checkpoint.Rd | 30 umx-4.0.0/umx/man/umx_set_condensed_slots.Rd | 30 umx-4.0.0/umx/man/umx_set_cores.Rd | 36 umx-4.0.0/umx/man/umx_set_data_variance_check.Rd | 30 umx-4.0.0/umx/man/umx_set_mvn_optimization_options.Rd | 30 umx-4.0.0/umx/man/umx_set_optimizer.Rd | 30 umx-4.0.0/umx/man/umx_set_plot_file_suffix.Rd | 30 umx-4.0.0/umx/man/umx_set_plot_format.Rd | 30 umx-4.0.0/umx/man/umx_set_separator.Rd | 30 umx-4.0.0/umx/man/umx_set_silent.Rd | 30 umx-4.0.0/umx/man/umx_set_table_format.Rd | 30 umx-4.0.0/umx/man/umx_stack.Rd | 34 umx-4.0.0/umx/man/umx_standardize.Rd | 125 - umx-4.0.0/umx/man/umx_str_chars.Rd |only umx-4.0.0/umx/man/umx_str_from_object.Rd |only umx-4.0.0/umx/man/umx_string_to_algebra.Rd | 125 - umx-4.0.0/umx/man/umx_time.Rd | 16 umx-4.0.0/umx/man/umx_trim.Rd | 18 umx-4.0.0/umx/man/umx_var.Rd | 24 umx-4.0.0/umx/man/umx_wide2long.Rd | 13 umx-4.0.0/umx/man/umx_write_to_clipboard.Rd | 14 umx-4.0.0/umx/man/us_skinfold_data.Rd | 52 umx-4.0.0/umx/man/xmuHasSquareBrackets.Rd | 125 - umx-4.0.0/umx/man/xmuLabel_MATRIX_Model.Rd | 125 - umx-4.0.0/umx/man/xmuLabel_Matrix.Rd | 125 - umx-4.0.0/umx/man/xmuLabel_RAM_Model.Rd | 124 - umx-4.0.0/umx/man/xmuMI.Rd | 127 - umx-4.0.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd | 125 - umx-4.0.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd | 125 - umx-4.0.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd | 125 - umx-4.0.0/umx/man/xmuMaxLevels.Rd | 125 - umx-4.0.0/umx/man/xmuMinLevels.Rd | 125 - umx-4.0.0/umx/man/xmuPropagateLabels.Rd | 125 - umx-4.0.0/umx/man/xmuRAM2Ordinal.Rd | 125 - umx-4.0.0/umx/man/xmuTwinSuper_Continuous.Rd |only umx-4.0.0/umx/man/xmuTwinUpgradeMeansToCovariateModel.Rd |only umx-4.0.0/umx/man/xmu_CI_merge.Rd | 125 - umx-4.0.0/umx/man/xmu_CI_stash.Rd | 125 - umx-4.0.0/umx/man/xmu_DF_to_mxData_TypeCov.Rd | 125 - umx-4.0.0/umx/man/xmu_PadAndPruneForDefVars.Rd | 125 - umx-4.0.0/umx/man/xmu_cell_is_on.Rd | 125 - umx-4.0.0/umx/man/xmu_check_levels_identical.Rd | 125 - umx-4.0.0/umx/man/xmu_check_needs_means.Rd | 125 - umx-4.0.0/umx/man/xmu_check_variance.Rd | 125 - umx-4.0.0/umx/man/xmu_clean_label.Rd | 125 - umx-4.0.0/umx/man/xmu_data_missing.Rd |only umx-4.0.0/umx/man/xmu_data_swap_a_block.Rd | 87 umx-4.0.0/umx/man/xmu_describe_data_WLS.Rd | 125 - umx-4.0.0/umx/man/xmu_dot_define_shapes.Rd | 11 umx-4.0.0/umx/man/xmu_dot_make_paths.Rd | 136 - umx-4.0.0/umx/man/xmu_dot_make_residuals.Rd | 136 - umx-4.0.0/umx/man/xmu_dot_maker.Rd | 136 - umx-4.0.0/umx/man/xmu_dot_mat2dot.Rd | 33 umx-4.0.0/umx/man/xmu_dot_move_ranks.Rd | 125 - umx-4.0.0/umx/man/xmu_dot_rank.Rd | 11 umx-4.0.0/umx/man/xmu_dot_rank_str.Rd | 125 - umx-4.0.0/umx/man/xmu_extract_column.Rd |only umx-4.0.0/umx/man/xmu_get_CI.Rd | 132 - umx-4.0.0/umx/man/xmu_lavaan_process_group.Rd | 125 - umx-4.0.0/umx/man/xmu_make_TwinSuperModel.Rd |only umx-4.0.0/umx/man/xmu_make_bin_cont_pair_data.Rd | 125 - umx-4.0.0/umx/man/xmu_make_mxData.Rd | 154 - umx-4.0.0/umx/man/xmu_match.arg.Rd | 125 - umx-4.0.0/umx/man/xmu_name_from_lavaan_str.Rd | 125 - umx-4.0.0/umx/man/xmu_path2twin.Rd |only umx-4.0.0/umx/man/xmu_path_regex.Rd |only umx-4.0.0/umx/man/xmu_safe_run_summary.Rd | 133 - umx-4.0.0/umx/man/xmu_set_sep_from_suffix.Rd | 125 - umx-4.0.0/umx/man/xmu_show_fit_or_comparison.Rd | 125 - umx-4.0.0/umx/man/xmu_simplex_corner.Rd | 125 - umx-4.0.0/umx/man/xmu_standardize_ACE.Rd | 127 - umx-4.0.0/umx/man/xmu_standardize_ACEcov.Rd | 125 - umx-4.0.0/umx/man/xmu_standardize_ACEv.Rd | 125 - umx-4.0.0/umx/man/xmu_standardize_CP.Rd | 127 - umx-4.0.0/umx/man/xmu_standardize_IP.Rd | 129 - umx-4.0.0/umx/man/xmu_standardize_RAM.Rd | 132 - umx-4.0.0/umx/man/xmu_standardize_SexLim.Rd | 125 - umx-4.0.0/umx/man/xmu_standardize_Simplex.Rd | 127 - umx-4.0.0/umx/man/xmu_start_value_list.Rd | 125 - umx-4.0.0/umx/man/xmu_starts.Rd | 141 - umx-4.0.0/umx/man/xmu_twin_add_WeightMatrices.Rd |only umx-4.0.0/umx/man/xmu_twin_check.Rd | 125 - umx-4.0.0/umx/man/xmu_twin_get_var_names.Rd |only umx-4.0.0/umx/man/xmu_twin_upgrade_selDvs2SelVars.Rd |only 307 files changed, 12676 insertions(+), 8749 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.8 dated 2020-05-09 and 0.8-1 dated 2020-05-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 8 ++++++++ inst/doc/introduction.html | 15 ++++++++------- src/showtext-win.def | 1 + 5 files changed, 25 insertions(+), 15 deletions(-)
Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R.
These helpers include 'htmltools::htmlDependency' functions, hierarchy
builders, and conversion tools for 'partykit', 'igraph,' 'table',
and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre, cph] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.8.7 dated 2019-08-21 and 0.9.0 dated 2020-05-25
DESCRIPTION | 16 MD5 | 52 - NAMESPACE | 2 NEWS.md | 5 R/dependencies.R | 4 R/hierarchy.R | 2 R/igraph.R | 2 R/party.R | 4 R/v8.R | 2 inst/www/d3/v5/API.md | 1537 +++++++++++++++++++++--------------------- inst/www/d3/v5/CHANGES.md | 8 inst/www/d3/v5/README.md | 6 inst/www/d3/v5/dist/d3.min.js | 4 man/change_to_name.Rd | 38 - man/d3_dep_jetpack.Rd | 162 ++-- man/d3_dep_v3.Rd | 66 - man/d3_dep_v4.Rd | 66 - man/d3_dep_v5.Rd | 66 - man/d3_igraph.Rd | 84 +- man/d3_json.Rd | 38 - man/d3_nest.Rd | 143 +-- man/d3_party.Rd | 110 +-- man/d3_table.Rd | 56 - man/d3_v8.Rd | 260 +++---- man/promote_na.Rd | 32 man/promote_na_one.Rd | 32 tests/testthat/test_v8.R | 2 27 files changed, 1415 insertions(+), 1384 deletions(-)
More information about distributionsrd at CRAN
Permanent link
Title: Helps Grade Assignment Submissions that are R Scripts
Description: After being given the location of your students' submissions and a test file, the function runs each .R file, and evaluates the results from all the given tests. Results are neatly returned in a data frame that has a row for each student, and a column for each test.
Author: Taylor Brown [aut, cre]
Maintainer: Taylor Brown <trb5me@virginia.edu>
Diff between gradeR versions 1.0.5 dated 2019-11-23 and 1.0.6 dated 2020-05-25
DESCRIPTION | 10 ++-- MD5 | 28 +++++++------ NAMESPACE | 1 NEWS.md | 9 +++- R/grade.r | 59 ++++++++++++++++++++++++++++- README.md | 2 build/vignette.rds |binary inst/doc/gradeR.R | 6 +- inst/doc/gradeR.Rmd | 2 inst/doc/gradeR.html | 11 +---- inst/doc/using_gradeR_with_Gradescope.Rmd |only inst/doc/using_gradeR_with_Gradescope.html |only man/calcGrades.Rd | 12 +++-- man/calcGradesForGradescope.Rd |only tests/testthat/test_calcGrades.r | 16 +++++++ vignettes/gradeR.Rmd | 2 vignettes/using_gradeR_with_Gradescope.Rmd |only 17 files changed, 120 insertions(+), 38 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.4.6 dated 2020-04-19 and 1.4.7 dated 2020-05-25
DESCRIPTION | 8 +- MD5 | 104 +++++++++++++++++++------------------ NEWS.md | 20 +++++++ R/MCMC-support.R | 10 ++- R/contrast.R | 4 - R/eff-size.R | 13 +++- R/emmGrid-methods.R | 18 +++++- R/emmeans.R | 3 + R/emtrends.R | 9 ++- R/plot.emm.R | 100 ++++++++++++++++++----------------- R/pwpp.R | 10 ++- R/ref-grid.R | 4 - R/summary.R | 32 +++++++++-- README.md | 4 - build/vignette.rds |binary inst/css/clean-simple.css | 6 +- inst/doc/FAQs.html | 8 +- inst/doc/basics.html | 6 +- inst/doc/comparisons.Rmd | 2 inst/doc/comparisons.html | 16 ++--- inst/doc/confidence-intervals.R | 3 + inst/doc/confidence-intervals.Rmd | 14 ++++ inst/doc/confidence-intervals.html | 26 ++++++--- inst/doc/interactions.R | 2 inst/doc/interactions.Rmd | 2 inst/doc/interactions.html | 48 ++++++++--------- inst/doc/messy-data.R | 2 inst/doc/messy-data.Rmd | 4 - inst/doc/messy-data.html | 24 ++++---- inst/doc/models.Rmd | 5 - inst/doc/models.html | 12 ++-- inst/doc/predictions.html | 6 +- inst/doc/sophisticated.html | 6 +- inst/doc/transformations.html | 6 +- inst/doc/utilities.R | 6 +- inst/doc/utilities.Rmd | 12 ++-- inst/doc/utilities.html | 30 +++++----- inst/doc/vignette-topics.Rmd | 7 ++ inst/doc/vignette-topics.html | 19 +++++- inst/doc/xplanations.R |only inst/doc/xplanations.Rmd |only inst/doc/xplanations.html |only inst/doc/xtending.html | 10 +-- man/eff_size.Rd | 8 ++ man/plot.Rd | 4 + man/summary.emmGrid.Rd | 21 +++++-- man/update.emmGrid.Rd | 16 ++++- vignettes/comparisons.Rmd | 2 vignettes/confidence-intervals.Rmd | 14 ++++ vignettes/interactions.Rmd | 2 vignettes/messy-data.Rmd | 4 - vignettes/models.Rmd | 5 - vignettes/utilities.Rmd | 12 ++-- vignettes/vignette-topics.Rmd | 7 ++ vignettes/xplanations.Rmd |only 55 files changed, 457 insertions(+), 259 deletions(-)
Title: R Templates for Reproducible Data Analyses
Description: A collection of R Markdown templates for nicely structured, reproducible
data analyses in R. The templates have embedded examples on how to write
citations, footnotes, equations and use colored message/info boxes, how to
cross-reference different parts/sections in the report, provide a nice
table of contents (toc) with a References section and proper R session
information as well as examples using DT tables and ggplot2 graphs.
The bookdown Lite template theme supports code folding.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between rtemps versions 0.6.0 dated 2020-05-12 and 0.7.0 dated 2020-05-25
rtemps-0.6.0/rtemps/inst/rmarkdown/templates/bookdown_lite |only rtemps-0.7.0/rtemps/DESCRIPTION | 6 +- rtemps-0.7.0/rtemps/MD5 | 21 +------- rtemps-0.7.0/rtemps/NEWS.md | 4 + rtemps-0.7.0/rtemps/R/create_temp.R | 25 +++++++--- rtemps-0.7.0/rtemps/inst/rstudio/templates/project/skeleton.dcf | 2 6 files changed, 30 insertions(+), 28 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
François Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.3.1 dated 2020-04-29 and 2.4.0 dated 2020-05-25
labelled-2.3.1/labelled/R/mean.R |only labelled-2.3.1/labelled/man/labelled.Rd |only labelled-2.3.1/labelled/man/labelled_spss.Rd |only labelled-2.3.1/labelled/man/mean.haven_labelled.Rd |only labelled-2.3.1/labelled/man/tagged_na.Rd |only labelled-2.4.0/labelled/DESCRIPTION | 6 - labelled-2.4.0/labelled/MD5 | 36 ++---- labelled-2.4.0/labelled/NAMESPACE | 4 labelled-2.4.0/labelled/NEWS.md | 7 + labelled-2.4.0/labelled/R/labelled.R | 61 ---------- labelled-2.4.0/labelled/R/na_values.R | 10 + labelled-2.4.0/labelled/R/retrocompatibility.R | 26 ++++ labelled-2.4.0/labelled/R/tagged_na.R | 48 -------- labelled-2.4.0/labelled/R/to_factor.R | 18 ++- labelled-2.4.0/labelled/inst/doc/intro_labelled.Rmd | 4 labelled-2.4.0/labelled/inst/doc/intro_labelled.html | 90 +++++++-------- labelled-2.4.0/labelled/man/recode.haven_labelled.Rd | 98 ++++++++--------- labelled-2.4.0/labelled/man/reexports.Rd |only labelled-2.4.0/labelled/man/to_factor.Rd | 15 ++ labelled-2.4.0/labelled/man/update_labelled.Rd | 14 ++ labelled-2.4.0/labelled/tests/testthat/test-labelled.r | 14 +- labelled-2.4.0/labelled/vignettes/intro_labelled.Rmd | 4 22 files changed, 213 insertions(+), 242 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <http://www.iconplc.com/innovation/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.8 dated 2020-03-17 and 0.4.9 dated 2020-05-25
DESCRIPTION | 6 +-- MD5 | 54 ++++++++++++++++----------------- NEWS.md | 3 + R/read_nm_tables.R | 16 ++++++--- R/summarise_nm_model.R | 4 +- R/vpc_data.R | 18 +++++++++-- build/vignette.rds |binary data/xpdb_ex_pk.rda |binary inst/doc/access_xpdb_data.html | 8 ++-- inst/doc/customize_plots.html | 22 ++++++------- inst/doc/import_model_outputs.html | 2 - inst/doc/introduction.html | 16 ++++----- inst/doc/multiple_pages.html | 12 +++---- inst/doc/vpc.R | 24 +++++++------- inst/doc/vpc.Rmd | 6 +-- inst/doc/vpc.html | 49 ++++++++++++++--------------- tests/testthat/data/ctrl_psn_vpc.RData |binary tests/testthat/data/ctrl_special.RData |binary tests/testthat/test-console_outputs.R | 6 +-- tests/testthat/test-edits.R | 11 ++++-- tests/testthat/test-fetch_data.R | 11 +++--- tests/testthat/test-manual_import.R | 1 tests/testthat/test-read_nm_model.R | 5 +++ tests/testthat/test-read_nm_tables.R | 4 +- tests/testthat/test-vpc.R | 23 +++++++++----- tests/testthat/test-xpdb_access.R | 21 +++++++++--- tests/testthat/test-xpose_data.R | 7 ---- vignettes/vpc.Rmd | 6 +-- 28 files changed, 188 insertions(+), 147 deletions(-)
Title: Interface to 'TensorFlow' Datasets
Description: Interface to 'TensorFlow' Datasets, a high-level library for
building complex input pipelines from simple, re-usable pieces.
See <https://www.tensorflow.org/programmers_guide/datasets> for additional
details.
Author: Daniel Falbel [ctb, cph, cre],
JJ Allaire [aut, cph],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Kevin Ushey [aut],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between tfdatasets versions 2.0.0 dated 2019-12-13 and 2.2.0 dated 2020-05-25
DESCRIPTION | 8 MD5 | 63 +-- NAMESPACE | 1 R/dataset_methods.R | 21 + R/feature_spec.R | 9 inst/doc/feature_columns.R | 140 +++---- inst/doc/feature_columns.html | 255 +++++++------- inst/doc/feature_spec.R | 186 +++++----- inst/doc/feature_spec.Rmd | 2 inst/doc/feature_spec.html | 212 +++++++---- inst/doc/introduction.R | 68 +-- inst/doc/introduction.html | 603 +++++++++++++++++----------------- man/dataset_batch.Rd | 1 man/dataset_cache.Rd | 1 man/dataset_collect.Rd | 1 man/dataset_concatenate.Rd | 1 man/dataset_decode_delim.Rd | 1 man/dataset_filter.Rd | 1 man/dataset_interleave.Rd | 1 man/dataset_map.Rd | 1 man/dataset_map_and_batch.Rd | 1 man/dataset_padded_batch.Rd | 1 man/dataset_prefetch.Rd | 1 man/dataset_prefetch_to_device.Rd | 1 man/dataset_reduce.Rd |only man/dataset_repeat.Rd | 1 man/dataset_shuffle.Rd | 1 man/dataset_shuffle_and_repeat.Rd | 1 man/dataset_skip.Rd | 1 man/dataset_take.Rd | 1 man/dataset_window.Rd | 1 tests/testthat/test-dataset-methods.R | 11 vignettes/feature_spec.Rmd | 2 33 files changed, 867 insertions(+), 732 deletions(-)
Title: Delineating Temporal Dataset Shifts in Electronic Health Records
Description: Functions to delineate temporal dataset shifts in Electronic Health
Records through the projection and visualization of dissimilarities
among data temporal batches. This is done through the estimation of
data statistical distributions over time and their projection in
non-parametric statistical manifolds, uncovering the patterns of the
data latent temporal variability. 'EHRtemporalVariability' is
particularly suitable for multi-modal data and categorical variables
with a high number of values, common features of biomedical data where
traditional statistical process control or time-series methods may not
be appropriate. 'EHRtemporalVariability' allows you to explore and
identify dataset shifts through visual analytics formats such as
Data Temporal heatmaps and Information Geometric Temporal (IGT) plots.
An additional 'EHRtemporalVariability' Shiny app can be used to load
and explore the package results and even to allow the use of these
functions to those users non-experienced in R coding. Preprint published
in medRxiv (Sáez et al. 2020) <doi:10.1101/2020.04.07.20056564>.
Author: Carlos Sáez [aut, cre],
Alba Gutiérrez-Sacristán [aut],
Isaac Kohane [aut],
Juan M García-Gómez [aut],
Paul Avillach [aut],
Biomedical Data Science Lab, Universitat Politècnica de València
(Spain) [cph],
Department of Biomedical Informatics, Harvard Medical School [cph]
Maintainer: Carlos Sáez <carsaesi@upv.es>
Diff between EHRtemporalVariability versions 1.1.0 dated 2020-05-21 and 1.1.1 dated 2020-05-25
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/allMethods.R | 16 ++++++++++------ R/estimateIGTTrajectory.R | 6 +++--- README.md | 2 +- inst/doc/EHRtemporalVariability.Rmd | 2 +- inst/doc/EHRtemporalVariability.html | 22 +++++++++++----------- man/estimateIGTTrajectory-methods.Rd | 2 +- vignettes/EHRtemporalVariability.Rmd | 2 +- vignettes/EHRtemporalVariabilityHelp.pdf |binary 11 files changed, 49 insertions(+), 41 deletions(-)
More information about EHRtemporalVariability at CRAN
Permanent link
Title: Meta-Analysis of Diagnostic Accuracy
Description: Provides functions for diagnostic meta-analysis. Next to basic analysis and visualization the bivariate Model of Reitsma et al. (2005) that is equivalent to the HSROC of Rutter & Gatsonis (2001) can be fitted. A new approach based to diagnostic meta-analysis of Holling et al. (2012) is also available. Standard methods like summary, plot and so on are provided.
Author: Philipp Doebler
Maintainer: Philipp Doebler <philipp.doebler@googlemail.com>
Diff between mada versions 0.5.9 dated 2019-09-27 and 0.5.10 dated 2020-05-25
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- build/vignette.rds |binary data/AuditC.rda |binary data/Dementia.rda |binary data/IAQ.rda |binary data/SAQ.rda |binary data/smoking.rda |binary inst/doc/mada.Rnw | 2 +- inst/doc/mada.pdf |binary vignettes/mada.Rnw | 2 +- 11 files changed, 18 insertions(+), 18 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.1.4 dated 2020-04-30 and 1.1.5 dated 2020-05-25
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NEWS.md | 6 +++ R/as_label.R | 44 ++++++++++++++----------- R/set_labels.R | 4 +- inst/doc/intro_sjlabelled.html | 56 ++++++++++++++++---------------- inst/doc/labelleddata.html | 4 +- inst/doc/quasiquotation.html | 70 ++++++++++++++++++++--------------------- 8 files changed, 107 insertions(+), 97 deletions(-)
Title: Hydrological Data Discovery Tools
Description: Tools to discover hydrological data, accessing catalogues and databases from various data providers.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>),
Wouter Buytaert [ctb] (Supervisor),
Erin Le Dell [ctb] (Erin reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/73),
Michael Sumner [ctb] (Michael reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/73)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between hddtools versions 0.8.2 dated 2018-08-09 and 0.9.1 dated 2020-05-25
hddtools-0.8.2/hddtools/R/getContent.R |only hddtools-0.8.2/hddtools/data/Data60UKcatalogue.rda |only hddtools-0.8.2/hddtools/data/GRDCcatalogue.rda |only hddtools-0.8.2/hddtools/data/MOPEXcatalogue.rda |only hddtools-0.8.2/hddtools/data/SEPAcatalogue.rda |only hddtools-0.8.2/hddtools/man/Data60UKcatalogue.Rd |only hddtools-0.8.2/hddtools/man/GRDCcatalogue.Rd |only hddtools-0.8.2/hddtools/man/MOPEXcatalogue.Rd |only hddtools-0.8.2/hddtools/man/SEPAcatalogue.Rd |only hddtools-0.8.2/hddtools/man/getContent.Rd |only hddtools-0.8.2/hddtools/man/tsGRDC.Rd |only hddtools-0.8.2/hddtools/tests/testthat/test-catalogueData60UK.R |only hddtools-0.8.2/hddtools/tests/testthat/test-catalogueGRDC.R |only hddtools-0.8.2/hddtools/tests/testthat/test-catalogueMOPEX.R |only hddtools-0.8.2/hddtools/tests/testthat/test-catalogueSEPA.R |only hddtools-0.8.2/hddtools/tests/testthat/test-tsData60UK.R |only hddtools-0.8.2/hddtools/tests/testthat/test-tsGRDC.R |only hddtools-0.8.2/hddtools/tests/testthat/test-tsMOPEX.R |only hddtools-0.8.2/hddtools/tests/testthat/test-tsSEPA.R |only hddtools-0.8.2/hddtools/vignettes/kilphedir.png |only hddtools-0.8.2/hddtools/vignettes/morwick.png |only hddtools-0.8.2/hddtools/vignettes/sepa.png |only hddtools-0.8.2/hddtools/vignettes/tsGRDC.png |only hddtools-0.9.1/hddtools/DESCRIPTION | 28 hddtools-0.9.1/hddtools/MD5 | 82 hddtools-0.9.1/hddtools/NAMESPACE | 23 hddtools-0.9.1/hddtools/NEWS.md |only hddtools-0.9.1/hddtools/R/Data60UK.R | 162 - hddtools-0.9.1/hddtools/R/GRDC.R | 438 ----- hddtools-0.9.1/hddtools/R/KGClimateClass.R | 21 hddtools-0.9.1/hddtools/R/MOPEX.R | 292 +-- hddtools-0.9.1/hddtools/R/SEPA.R | 184 -- hddtools-0.9.1/hddtools/R/bboxSpatialPolygon.R | 31 hddtools-0.9.1/hddtools/R/hddtools-package.R | 134 - hddtools-0.9.1/hddtools/README.md | 119 - hddtools-0.9.1/hddtools/build/vignette.rds |binary hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.R | 183 +- hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.Rmd | 213 +- hddtools-0.9.1/hddtools/inst/doc/hddtools_vignette.html | 847 +++++----- hddtools-0.9.1/hddtools/man/bboxSpatialPolygon.Rd | 11 hddtools-0.9.1/hddtools/man/catalogueData60UK.Rd | 33 hddtools-0.9.1/hddtools/man/catalogueGRDC.Rd | 40 hddtools-0.9.1/hddtools/man/catalogueMOPEX.Rd | 52 hddtools-0.9.1/hddtools/man/catalogueSEPA.Rd | 48 hddtools-0.9.1/hddtools/man/grdcLTMMD.Rd | 6 hddtools-0.9.1/hddtools/man/hddtools.Rd | 3 hddtools-0.9.1/hddtools/man/tsData60UK.Rd | 12 hddtools-0.9.1/hddtools/man/tsMOPEX.Rd | 29 hddtools-0.9.1/hddtools/man/tsSEPA.Rd | 16 hddtools-0.9.1/hddtools/tests/testthat/test-Data60UK.R |only hddtools-0.9.1/hddtools/tests/testthat/test-GRDC.R |only hddtools-0.9.1/hddtools/tests/testthat/test-MOPEX.R |only hddtools-0.9.1/hddtools/tests/testthat/test-SEPA.R |only hddtools-0.9.1/hddtools/vignettes/hddtools_vignette.Rmd | 213 +- hddtools-0.9.1/hddtools/vignettes/leaflet.png |binary hddtools-0.9.1/hddtools/vignettes/mopex.png |binary 56 files changed, 1354 insertions(+), 1866 deletions(-)
Title: Balanced Factorial Designs
Description: Generate balanced factorial designs with crossed and nested random and fixed effects <https://github.com/mmrabe/designr>.
Author: Maximilian Rabe [aut, cre],
Reinhold Kliegl [aut],
Schad Daniel [aut]
Maintainer: Maximilian Rabe <maximilian.rabe@uni-potsdam.de>
Diff between designr versions 0.1.9 dated 2019-12-04 and 0.1.10 dated 2020-05-25
DESCRIPTION | 8 ++--- MD5 | 26 ++++++++--------- R/helpers.R | 8 ++--- R/methods.R | 2 - inst/doc/design-to-dataframe.R | 16 +++++----- inst/doc/design-to-dataframe.html | 26 ++++++++--------- man/design.contrasts.Rd | 14 ++++++--- man/fixed.factor.Rd | 16 +++++++--- man/nobs-factorDesign-method.Rd | 1 man/output.design.Rd | 32 +++++++++++++++------ man/plus-factorContainer-factorContainer-method.Rd | 1 man/random.factor.Rd | 9 ++++- man/subset-factorDesign-method.Rd | 1 man/write.design.Rd | 18 ++++++++--- 14 files changed, 108 insertions(+), 70 deletions(-)
Title: Multidimensional Penalized Splines for Survival and Net Survival
Models
Description: Fits hazard and excess hazard models with multidimensional penalized splines allowing for
time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (thanks to explicit calculation of the derivatives of the likelihood) and offers a unified framework for
multidimensional penalized hazard and excess hazard models. survPen may be of interest to those who 1) analyse any kind of time-to-event data: mortality, disease relapse, machinery breakdown, unemployment, etc 2) wish to describe the associated hazard and to understand which predictors impact its dynamics.
See Fauvernier et al. (2019a) <doi:10.21105/joss.01434> for an overview of the package and Fauvernier et al. (2019b) <doi:10.1111/rssc.12368> for the method.
Author: Mathieu Fauvernier [aut, cre], Laurent Roche [aut], Laurent Remontet [aut], Zoe Uhry [ctb], Nadine Bossard [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 1.3.0 dated 2020-02-03 and 1.5.0 dated 2020-05-25
survPen-1.3.0/survPen/R/survPenV1_30.r |only survPen-1.3.0/survPen/src/rcpp_multmatvec.cpp |only survPen-1.5.0/survPen/DESCRIPTION | 8 survPen-1.5.0/survPen/MD5 | 85 +++-- survPen-1.5.0/survPen/NAMESPACE | 5 survPen-1.5.0/survPen/NEWS | 10 survPen-1.5.0/survPen/R/RcppExports.R | 106 +++++++ survPen-1.5.0/survPen/R/survPenV1_50.r |only survPen-1.5.0/survPen/build/vignette.rds |binary survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.R | 120 ++++---- survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.Rmd | 22 + survPen-1.5.0/survPen/inst/doc/survival_analysis_with_survPen.html | 143 ++++++---- survPen-1.5.0/survPen/man/Hess_rho.Rd |only survPen-1.5.0/survPen/man/NR.beta.Rd | 5 survPen-1.5.0/survPen/man/NR.rho.Rd | 24 + survPen-1.5.0/survPen/man/colSums2.Rd |only survPen-1.5.0/survPen/man/constraint.Rd | 2 survPen-1.5.0/survPen/man/cor.var.Rd | 2 survPen-1.5.0/survPen/man/crs.FP.Rd | 2 survPen-1.5.0/survPen/man/crs.Rd | 2 survPen-1.5.0/survPen/man/datCancer.Rd | 6 survPen-1.5.0/survPen/man/deriv_R.Rd |only survPen-1.5.0/survPen/man/design.matrix.Rd | 15 - survPen-1.5.0/survPen/man/grad_rho.Rd |only survPen-1.5.0/survPen/man/grapes-cross-grapes.Rd |only survPen-1.5.0/survPen/man/instr.Rd | 2 survPen-1.5.0/survPen/man/inv.repam.Rd | 2 survPen-1.5.0/survPen/man/model.cons.Rd | 24 + survPen-1.5.0/survPen/man/predict.survPen.Rd | 30 +- survPen-1.5.0/survPen/man/print.summary.survPen.Rd | 2 survPen-1.5.0/survPen/man/rd.Rd | 2 survPen-1.5.0/survPen/man/repam.Rd | 2 survPen-1.5.0/survPen/man/smf.Rd | 2 survPen-1.5.0/survPen/man/smooth.cons.Rd | 14 survPen-1.5.0/survPen/man/smooth.cons.integral.Rd | 16 - survPen-1.5.0/survPen/man/smooth.spec.Rd | 12 survPen-1.5.0/survPen/man/summary.survPen.Rd | 2 survPen-1.5.0/survPen/man/survPen.Rd | 27 + survPen-1.5.0/survPen/man/survPen.fit.Rd | 14 survPen-1.5.0/survPen/man/survPenObject.Rd | 3 survPen-1.5.0/survPen/man/tensor.in.Rd | 2 survPen-1.5.0/survPen/man/tensor.prod.S.Rd | 2 survPen-1.5.0/survPen/man/tensor.prod.X.Rd | 2 survPen-1.5.0/survPen/src/Makevars |only survPen-1.5.0/survPen/src/Makevars.win |only survPen-1.5.0/survPen/src/RcppExports.cpp | 118 ++++++++ survPen-1.5.0/survPen/src/rcpp_survPen.cpp |only survPen-1.5.0/survPen/src/survPen_types.h | 1 survPen-1.5.0/survPen/vignettes/survival_analysis_with_survPen.Rmd | 22 + 49 files changed, 647 insertions(+), 211 deletions(-)
Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow Archive (<http://nrfa.ceh.ac.uk/>, terms and conditions: <http://nrfa.ceh.ac.uk/costs-terms-and-conditions>). The package contains R wrappers to the UK NRFA data temporary-API. There are functions to retrieve stations falling in a bounding box, to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>),
Matthew Fry [ctb] (Matthew supervised the unofficial API integration.),
Wouter Buytaert [ctb] (This package is part of Claudia Vitolo's PhD
work and Wouter is the supervisor.),
Michael Spencer [ctb] (Michael updated the function osg_parse to work
with grid references of different lengths.),
Tobias Gauster [ctb] (Tobias improved the function osg_parse
introducing vectorisation),
Ilaria Prosdocimi [ctb] (Ilaria contributed to the adaptation of the
package to the 2019 API)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between rnrfa versions 2.0.2 dated 2020-02-01 and 2.0.3 dated 2020-05-25
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/catalogue.R | 4 ++++ R/internals.R | 20 +++++++++++++------- README.md | 5 +++-- build/vignette.rds |binary inst/doc/rnrfa-vignette.html | 12 +++++------- man/catalogue.Rd | 9 +++++++-- man/get_ts.Rd | 10 ++++++++-- man/plot_rain_flow.Rd | 3 +-- tests/testthat/test-catalogue.R | 4 ++-- tests/testthat/test-get_ts.R | 6 +++++- 12 files changed, 63 insertions(+), 40 deletions(-)
Title: Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Description: Query the main 'R' 'SVN' repository to find the
versions 'r-release' and 'r-oldrel' refer to, and also all previous
'R' versions and their release dates.
Author: Gábor Csárdi [aut, cre],
Jeroen Ooms [ctb],
R Consortium [fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rversions versions 2.0.1 dated 2019-12-03 and 2.0.2 dated 2020-05-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/nicks.R | 4 +++- R/urls.R | 2 +- inst/NEWS.md | 4 ++++ 6 files changed, 20 insertions(+), 10 deletions(-)
Title: Joint Frailty-Copula Models for Tumour Progression and Death in
Meta-Analysis
Description: Fit survival data and perform dynamic prediction under joint frailty-copula models for tumour progression and death.
Likelihood-based methods are employed for estimating model parameters, where the baseline hazard functions are modeled by the cubic M-spline or the Weibull model.
The methods are applicable for meta-analytic data containing individual-patient information from several studies.
Survival outcomes need information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
Methodologies were published in
Emura et al. (2017) <doi:10.1177/0962280215604510>, Emura et al. (2018) <doi:10.1177/0962280216688032>,
Emura et al. (2019) <doi:10.1177/0962280219892295>, and Wu et al. 2020 <doi:10.1007/s00180-020-00977-1>.
See also the book of Emura et al. (2019) <doi:10.1007/978-981-13-3516-7>.
Survival data from ovarian cancer patients are also available.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 3.7 dated 2019-11-20 and 3.8 dated 2020-05-25
DESCRIPTION | 24 ++++++++++++------------ MD5 | 12 ++++++------ man/Weibull.simu.Rd | 6 +++--- man/cmprskCox.reg.Rd | 12 ++++++------ man/dataOvarian.Rd | 25 +++++++++++++++---------- man/joint.Cox-package.Rd | 24 +++++++++++++----------- man/jointCox.Weibull.reg.Rd | 15 +++++++++++---- 7 files changed, 66 insertions(+), 52 deletions(-)
Title: Sparse Matrix Format with Data on Disk
Description: Provides a sparse matrix format with data stored on disk, to be
used in both R and C++. This is intended for more efficient use of sparse
data in C++ and also when parallelizing, since data on disk does not need
copying. Only a limited number of features will be implemented. For now,
conversion can be performed from a 'dgCMatrix' of R package 'Matrix'.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigsparser versions 0.1.0 dated 2020-04-10 and 0.2.0 dated 2020-05-25
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++++------- NAMESPACE | 1 + R/RcppExports.R | 4 ++++ R/prod.R | 8 +++++++- R/solve-sym.R |only README.md | 2 ++ inst/include/bigsparser/EigenMatrixReplacement.h |only inst/include/bigsparser/SFBM.h | 3 +++ man/sp_solve_sym.Rd |only src/RcppExports.cpp | 17 +++++++++++++++++ src/solve.cpp |only tests/testthat/test-solve.R |only 13 files changed, 50 insertions(+), 12 deletions(-)
Title: Seasonal Analysis of Health Data
Description: Routines for the seasonal analysis of health data,
including regression models, time-stratified case-crossover,
plotting functions and residual checks, see Barnett and Dobson (2010) ISBN 978-3-642-10748-1. Thanks to Yuming Guo
for checking the case-crossover code.
Author: Adrian Barnett and Peter Baker
Maintainer: Adrian Barnett <a.barnett@qut.edu.au>
Diff between season versions 0.3.10 dated 2020-03-16 and 0.3.11 dated 2020-05-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/cosinor.R | 1 + R/print.summary.Cosinor.R | 4 ++-- R/summary.Cosinor.R | 3 ++- build/vignette.rds |binary inst/doc/season-vignette.html | 18 ++++++++---------- 7 files changed, 22 insertions(+), 22 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.5 dated 2020-03-21 and 0.3.6 dated 2020-05-25
DESCRIPTION | 16 +- MD5 | 41 +++---- NEWS.md | 220 ++++++++++++++++---------------------- R/completion.R | 148 +++++++++++++++---------- R/diagnostics.R | 13 +- R/document.R | 24 ++-- R/handlers-general.R | 22 --- R/handlers-textsync.R | 2 R/languagebase.R | 2 R/languageclient.R | 2 R/languageserver.R | 20 +-- R/namespace.R | 4 R/task.R | 39 +++--- R/utils.R | 13 +- R/workspace.R | 101 ++++++++++++++++- README.md | 17 +- inst/projects/mypackage/NAMESPACE | 2 man/workspace_completion.Rd | 2 tests/testthat/helper-utils.R | 1 tests/testthat/test-codeunits.R | 4 tests/testthat/test-completion.R | 70 +++++++++++- tests/testthat/test-null-root.R |only 22 files changed, 476 insertions(+), 287 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre] (<https://orcid.org/0000-0002-3039-0703>)
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 1.3.0 dated 2017-04-25 and 1.3.2 dated 2020-05-25
lamW-1.3.0/lamW/src/init.c |only lamW-1.3.2/lamW/DESCRIPTION | 12 +- lamW-1.3.2/lamW/MD5 | 26 ++-- lamW-1.3.2/lamW/R/RcppExports.R | 6 - lamW-1.3.2/lamW/README.md | 71 +++++++++++- lamW-1.3.2/lamW/build/partial.rdb |binary lamW-1.3.2/lamW/inst/CITATION |only lamW-1.3.2/lamW/inst/News.Rd | 80 +++++++++++-- lamW-1.3.2/lamW/inst/include/lamW.h | 18 +-- lamW-1.3.2/lamW/inst/include/lamW_RcppExports.h | 138 ++++++++++++------------ lamW-1.3.2/lamW/man/lamW-package.Rd | 6 - lamW-1.3.2/lamW/man/lamW.Rd | 12 -- lamW-1.3.2/lamW/src/RcppExports.cpp | 42 +++++-- lamW-1.3.2/lamW/src/lambertW.cpp | 59 +++++----- lamW-1.3.2/lamW/tests/testthat/test-lamW.R | 35 ++++-- 15 files changed, 333 insertions(+), 172 deletions(-)
Title: Simple Interface to 'Microsoft Graph'
Description: A simple interface to the 'Microsoft Graph' API <https://docs.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. Currently, this package aims to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it can be easily extended to cover other services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureGraph versions 1.1.0 dated 2019-11-08 and 1.1.1 dated 2020-05-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/AzureGraph.R | 2 +- build/vignette.rds |binary inst/doc/intro.html | 22 +++++++++++++--------- 6 files changed, 26 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 2.0.3
Title: Input Output Analysis
Description: Calculates fundamental IO matrices (Leontief, Wassily W. (1951) <doi:10.1038/scientificamerican1051-15>); within period analysis via various rankings and coefficients (Sonis and Hewings (2006) <doi:10.1080/09535319200000013>, Blair and Miller (2009) <ISBN:978-0-521-73902-3>, Antras et al (2012) <doi:10.3386/w17819>, Hummels, Ishii, and Yi (2001) <doi:10.1016/S0022-1996(00)00093-3>); across period analysis with impact analysis (Dietzenbacher, van der Linden, and Steenge (2006) <doi:10.1080/09535319300000017>, Sonis, Hewings, and Guo (2006) <doi:10.1080/09535319600000002>); and a variety of table operators.
Author: John Wade [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: John Wade <jjpwade2@illinois.edu>
Diff between ioanalysis versions 0.3.0 dated 2020-05-06 and 0.3.1 dated 2020-05-25
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- R/feedback.loop.R | 35 ++++++++++++++++++++++++++++++----- R/feedback.loop.matrix.R |only man/feedback.loop.Rd | 32 ++++++++++++++++++++++---------- 5 files changed, 59 insertions(+), 21 deletions(-)
Title: Extra Recipes for Encoding Categorical Predictors
Description: Predictors can be converted to one or more numeric representations using simple generalized linear models <arXiv:1611.09477> or nonlinear models <arXiv:1604.06737>. Most encoding methods are supervised.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between embed versions 0.0.6 dated 2020-03-17 and 0.1.0 dated 2020-05-25
DESCRIPTION | 18 +++++------ MD5 | 45 +++++++++++++++++----------- NAMESPACE | 34 +++++++++++---------- NEWS.md | 19 +++++++++++ R/0_imports.R |only R/bayes.R | 26 ++++------------ R/discretize_cart.R |only R/discretize_xgb.R |only R/glm.R | 20 +++--------- R/hash.R |only R/lme.R | 21 +++---------- R/tf.R | 54 +++++++++++----------------------- R/tunable.R | 34 +++++++++++++++++++++ R/umap.R | 18 +---------- R/woe.R | 25 +++++---------- man/add_woe.Rd | 2 - man/step_discretize_cart.Rd |only man/step_discretize_xgb.Rd |only man/step_embed.Rd | 14 ++++---- man/step_feature_hash.Rd |only man/step_lencode_mixed.Rd | 2 - man/tunable.step_embed.Rd | 6 +++ tests/testthat/make_binned_data.R |only tests/testthat/test_discretize_cart.R |only tests/testthat/test_discretize_xgb.R |only tests/testthat/test_hash.R |only tests/testthat/test_no_pooling.R | 2 + tests/testthat/test_pooling.R | 17 +++++++--- tests/testthat/test_woe.R | 20 +++++++++--- 29 files changed, 200 insertions(+), 177 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-19 0.0.1
Title: Multivariate Tests for the Vector of Means
Description: This is a statistical tool interactive that provides multivariate statistical tests that are more powerful than traditional Hotelling T2 test and LRT (likelihood ratio test) for the vector of normal mean populations with and without contamination and non-normal populations (Henrique J. P. Alves & Daniel F. Ferreira (2019) <DOI: 10.1080/03610918.2019.1693596>).
Author: Henrique Jose de Paula Alves [aut, cre],
Ben Deivide de Oliveira Batista [ctb],
Daniel Furtado Ferreira [aut]
Maintainer: Henrique Jose de Paula Alves <jpahenrique@gmail.com>
Diff between TVMM versions 2.0 dated 2020-03-26 and 3.0 dated 2020-05-25
DESCRIPTION | 19 +++++++++++-------- MD5 | 21 ++++++++++++++++----- NAMESPACE | 43 ++++++++++++++++++++++++++++++------------- R/T2Boot.R | 6 +++--- R/T2O.R | 4 ++-- R/T2RobustBoot.R | 4 ++-- R/globalvariables.R |only R/guiTVMM.R |only inst |only man/guiTVMM.Rd |only 10 files changed, 64 insertions(+), 33 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Darko Bergant [aut],
Katharina Brunner [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.1.2 dated 2020-05-04 and 0.1.3 dated 2020-05-25
dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.R |only dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.Rmd |only dm-0.1.2/dm/inst/doc/dm-class-and-basic-operations.html |only dm-0.1.2/dm/inst/doc/dm-db.R |only dm-0.1.2/dm/inst/doc/dm-db.Rmd |only dm-0.1.2/dm/inst/doc/dm-db.html |only dm-0.1.2/dm/inst/doc/dm-df.R |only dm-0.1.2/dm/inst/doc/dm-df.Rmd |only dm-0.1.2/dm/inst/doc/dm-df.html |only dm-0.1.2/dm/inst/doc/dm-filtering.R |only dm-0.1.2/dm/inst/doc/dm-filtering.Rmd |only dm-0.1.2/dm/inst/doc/dm-filtering.html |only dm-0.1.2/dm/inst/doc/dm-function-naming-logic.R |only dm-0.1.2/dm/inst/doc/dm-function-naming-logic.Rmd |only dm-0.1.2/dm/inst/doc/dm-function-naming-logic.html |only dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.R |only dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.Rmd |only dm-0.1.2/dm/inst/doc/dm-introduction-relational-data-models.html |only dm-0.1.2/dm/inst/doc/dm-joining.R |only dm-0.1.2/dm/inst/doc/dm-joining.Rmd |only dm-0.1.2/dm/inst/doc/dm-joining.html |only dm-0.1.2/dm/inst/doc/dm-low-level.R |only dm-0.1.2/dm/inst/doc/dm-low-level.Rmd |only dm-0.1.2/dm/inst/doc/dm-low-level.html |only dm-0.1.2/dm/inst/doc/dm-version-migration-guide.R |only dm-0.1.2/dm/inst/doc/dm-version-migration-guide.Rmd |only dm-0.1.2/dm/inst/doc/dm-version-migration-guide.html |only dm-0.1.2/dm/inst/doc/dm-visualization.R |only dm-0.1.2/dm/inst/doc/dm-visualization.Rmd |only dm-0.1.2/dm/inst/doc/dm-visualization.html |only dm-0.1.2/dm/inst/doc/dm-zoom-to-table.R |only dm-0.1.2/dm/inst/doc/dm-zoom-to-table.Rmd |only dm-0.1.2/dm/inst/doc/dm-zoom-to-table.html |only dm-0.1.2/dm/man/figures/README-draw-1.png |only dm-0.1.2/dm/tests/testthat/out/decompose-table-data-ts.txt |only dm-0.1.2/dm/tests/testthat/out/reunite-parent-child-data-ts.txt |only dm-0.1.2/dm/tests/testthat/out/reunite-parent-child_from_list-data-ts.txt |only dm-0.1.2/dm/vignettes/dm-class-and-basic-operations.Rmd |only dm-0.1.2/dm/vignettes/dm-db.Rmd |only 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Title: Access and Import Data from the French Open Data Portal
Description: Allows the user to access and import data from the rich French open data portal through the provided free API <https://doc.data.gouv.fr/api/reference/>.
The portal is free, and no credential is required for extracting datasets.
Author: Mohamed El Fodil Ihaddaden
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between BARIS versions 1.1.0 dated 2020-04-20 and 1.1.1 dated 2020-05-25
DESCRIPTION | 10 +-- MD5 | 32 +++++------ NAMESPACE | 3 - NEWS.md | 4 + R/BARIS_explain.R | 11 ++-- R/BARIS_extract.R | 21 +++---- R/BARIS_resources.R | 14 +++-- R/BARIS_search.R | 13 +++- README.md | 123 ++++++++++++++++++++++++---------------------- build/vignette.rds |binary man/BARIS_explain.Rd | 42 +++++++-------- man/BARIS_extract.Rd | 44 ++++++++-------- man/BARIS_home.Rd | 36 ++++++------- man/BARIS_resources.Rd | 42 +++++++-------- man/BARIS_search.Rd | 46 ++++++++--------- man/BARIS_set_fromJSON.Rd | 44 ++++++++-------- man/figures/Thumbs.db |binary 17 files changed, 254 insertions(+), 231 deletions(-)