Title: Distributions for Ecological Models in 'nimble'
Description: Common ecological distributions for 'nimble' models in the form of nimbleFunction objects.
Includes Cormack-Jolly-Seber, occupancy, dynamic occupancy, hidden Markov, dynamic hidden Markov, and N-mixture models.
(Jolly (1965) <DOI: 10.2307/2333826>, Seber (1965) <DOI: 10.2307/2333827>, Turek et al. (2016) <doi:10.1007/s10651-016-0353-z>).
Author: Benjamin R. Goldstein [aut, cre],
Daniel Turek [aut],
Lauren Ponisio [aut],
Perry de Valpine [aut]
Maintainer: Benjamin R. Goldstein <ben.goldstein@berkeley.edu>
Diff between nimbleEcology versions 0.2.2 dated 2020-05-12 and 0.3.0 dated 2020-05-29
DESCRIPTION | 11 MD5 | 44 ++- NAMESPACE | 1 R/dCJS.R | 9 R/dDHMM.R | 239 +++++++++++++++---- R/dDynOcc.R | 17 - R/dHMM.R | 207 ++++++++++++++-- R/dNmixture.R | 9 R/dOcc.R | 12 R/zzz.R | 34 +- README.md | 5 build |only inst/CITATION |only inst/NEWS |only inst/doc/Introduction_to_nimbleEcology.R |only inst/doc/Introduction_to_nimbleEcology.Rmd |only inst/doc/Introduction_to_nimbleEcology.html | 177 +++++++------- man/dCJS.Rd | 9 man/dDHMM.Rd | 71 +++-- man/dDynOcc.Rd | 17 - man/dHMM.Rd | 50 ++-- man/dNmixture.Rd | 9 man/dOcc.Rd | 11 tests/testthat/test-DHMM.R | 343 +++++++++++++++++++++++++++- tests/testthat/test-HMM.R | 200 +++++++++++++++- vignettes |only 26 files changed, 1144 insertions(+), 331 deletions(-)
Title: A Simple Way to Specify Symmetric, Block Diagonal Matrices
Description: Provides a simple mechanism to specify a symmetric block diagonal matrices (often
used for covariance matrices). This is based on the domain specific language implemented
in 'nlmixr' but expanded to create matrices in R generally instead of specifying parts of matrices
to estimate.
Author: Matthew L. Fidler [aut, cre] (<https://orcid.org/0000-0001-8538-6691>)
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between lotri versions 0.2.1 dated 2020-02-12 and 0.2.2 dated 2020-05-29
DESCRIPTION | 16 MD5 | 32 NAMESPACE | 29 NEWS.md | 29 R/lotri.R | 1385 +++++++++++++++++++++++++---------------- README.md | 337 +++++++-- build/vignette.rds |binary inst/doc/lotri-motivation.R | 146 ++-- inst/doc/lotri-motivation.Rmd | 256 ++++--- inst/doc/lotri-motivation.html | 666 +++++++++++++------ man/as.lotri.Rd |only man/figures |only man/lotri.Rd | 191 +++-- man/lotriMat.Rd |only man/lotriSep.Rd |only src |only tests/testthat.R | 8 tests/testthat/test-lotri.R | 1245 +++++++++++++++++++++++++++--------- vignettes/lotri-motivation.Rmd | 256 ++++--- 19 files changed, 3082 insertions(+), 1514 deletions(-)
Title: Check User-Supplied Function Arguments
Description: For developers to check user-supplied function
arguments. It is designed to be simple, fast and customizable. Error
messages follow the tidyverse style guide.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
Ayla Pearson [ctb] (<https://orcid.org/0000-0001-7388-1222>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between chk versions 0.4.0 dated 2020-03-04 and 0.5.0 dated 2020-05-29
chk-0.4.0/chk/man/chk_datetime.Rd |only chk-0.4.0/chk/tests/testthat/tests-chk-character.R |only chk-0.5.0/chk/DESCRIPTION | 8 chk-0.5.0/chk/MD5 | 138 +++++++----- chk-0.5.0/chk/NAMESPACE | 19 + chk-0.5.0/chk/NEWS.md | 16 + chk-0.5.0/chk/R/check-dirs.R |only chk-0.5.0/chk/R/check-files.R |only chk-0.5.0/chk/R/check-values.R | 19 + chk-0.5.0/chk/R/chk-character-or-factor.R |only chk-0.5.0/chk/R/chk-chr.R |only chk-0.5.0/chk/R/chk-datetime.R | 52 +++- chk-0.5.0/chk/R/chk-dbl.R |only chk-0.5.0/chk/R/chk-factor.R |only chk-0.5.0/chk/R/chk-is.R |only chk-0.5.0/chk/R/chk-not-subset.R |only chk-0.5.0/chk/R/chk-null-or.R |only chk-0.5.0/chk/R/chk-orderset.R |only chk-0.5.0/chk/R/chk-wnum.R |only chk-0.5.0/chk/R/deprecated.R | 38 --- chk-0.5.0/chk/R/template.R | 1 chk-0.5.0/chk/README.md | 25 -- chk-0.5.0/chk/build/chk.pdf |binary chk-0.5.0/chk/build/vignette.rds |binary chk-0.5.0/chk/inst/doc/chk-families.html | 13 - chk-0.5.0/chk/inst/doc/chk.html | 26 -- chk-0.5.0/chk/man/check_data.Rd | 2 chk-0.5.0/chk/man/check_dim.Rd | 2 chk-0.5.0/chk/man/check_dirs.Rd |only chk-0.5.0/chk/man/check_files.Rd |only chk-0.5.0/chk/man/check_key.Rd | 2 chk-0.5.0/chk/man/check_names.Rd | 2 chk-0.5.0/chk/man/check_values.Rd | 6 chk-0.5.0/chk/man/chk_array.Rd | 1 chk-0.5.0/chk/man/chk_atomic.Rd | 1 chk-0.5.0/chk/man/chk_character.Rd | 2 chk-0.5.0/chk/man/chk_character_or_factor.Rd |only chk-0.5.0/chk/man/chk_chr.Rd |only chk-0.5.0/chk/man/chk_data.Rd | 1 chk-0.5.0/chk/man/chk_date.Rd | 2 chk-0.5.0/chk/man/chk_date_time.Rd |only chk-0.5.0/chk/man/chk_dbl.Rd |only chk-0.5.0/chk/man/chk_deprecated.Rd | 20 - chk-0.5.0/chk/man/chk_double.Rd | 2 chk-0.5.0/chk/man/chk_environment.Rd | 2 chk-0.5.0/chk/man/chk_factor.Rd |only chk-0.5.0/chk/man/chk_function.Rd | 1 chk-0.5.0/chk/man/chk_integer.Rd | 2 chk-0.5.0/chk/man/chk_is.Rd |only chk-0.5.0/chk/man/chk_join.Rd | 8 chk-0.5.0/chk/man/chk_list.Rd | 2 chk-0.5.0/chk/man/chk_logical.Rd | 2 chk-0.5.0/chk/man/chk_matrix.Rd | 1 chk-0.5.0/chk/man/chk_not_subset.Rd |only chk-0.5.0/chk/man/chk_null_or.Rd |only chk-0.5.0/chk/man/chk_number.Rd | 2 chk-0.5.0/chk/man/chk_numeric.Rd | 1 chk-0.5.0/chk/man/chk_orderset.Rd |only chk-0.5.0/chk/man/chk_s3_class.Rd | 1 chk-0.5.0/chk/man/chk_s4_class.Rd | 1 chk-0.5.0/chk/man/chk_scalar.Rd | 2 chk-0.5.0/chk/man/chk_setequal.Rd | 21 + chk-0.5.0/chk/man/chk_string.Rd | 2 chk-0.5.0/chk/man/chk_subset.Rd | 19 + chk-0.5.0/chk/man/chk_superset.Rd | 6 chk-0.5.0/chk/man/chk_tz.Rd | 2 chk-0.5.0/chk/man/chk_vector.Rd | 1 chk-0.5.0/chk/man/chk_whole_number.Rd | 2 chk-0.5.0/chk/man/chk_whole_numeric.Rd | 1 chk-0.5.0/chk/man/chk_wnum.Rd |only chk-0.5.0/chk/man/expect_chk_error.Rd | 33 +- chk-0.5.0/chk/man/params.Rd | 2 chk-0.5.0/chk/tests/testthat/test-aaa-deprecated.R | 52 ++-- chk-0.5.0/chk/tests/testthat/test-check-data.R | 4 chk-0.5.0/chk/tests/testthat/test-check-dirs.R |only chk-0.5.0/chk/tests/testthat/test-check-files.R |only chk-0.5.0/chk/tests/testthat/test-check-values.R | 35 +++ chk-0.5.0/chk/tests/testthat/test-chk-character-or-factor.R |only chk-0.5.0/chk/tests/testthat/test-chk-character.R |only chk-0.5.0/chk/tests/testthat/test-chk-chr.R |only chk-0.5.0/chk/tests/testthat/test-chk-date.R | 14 - chk-0.5.0/chk/tests/testthat/test-chk-dbl.R |only chk-0.5.0/chk/tests/testthat/test-chk-factor.R |only chk-0.5.0/chk/tests/testthat/test-chk-is.R |only chk-0.5.0/chk/tests/testthat/test-chk-not-subset.R |only chk-0.5.0/chk/tests/testthat/test-chk-null-or.R |only chk-0.5.0/chk/tests/testthat/test-chk-orderset.R |only chk-0.5.0/chk/tests/testthat/test-chk-wnum.R |only chk-0.5.0/chk/tests/testthat/test-date-time.R |only 89 files changed, 363 insertions(+), 254 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8: Google's open source JavaScript and WebAssembly
engine. This package can be compiled either with V8 version 6 and up, a NodeJS
shared library, or the legacy 3.14/3.15 branch of V8.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 3.0.2 dated 2020-03-14 and 3.1.0 dated 2020-05-29
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary configure | 18 +++++++++++++++--- inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 8 ++++---- src/Makevars.in | 2 +- 9 files changed, 37 insertions(+), 21 deletions(-)
Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests
across all combinations of multiple grouping variables.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 1.0.0 dated 2020-05-05 and 1.0.1 dated 2020-05-29
groupedstats-1.0.0/groupedstats/R/data.R |only groupedstats-1.0.0/groupedstats/R/groupedstats-package.R |only groupedstats-1.0.0/groupedstats/data |only groupedstats-1.0.0/groupedstats/man/Titanic_full.Rd |only groupedstats-1.0.0/groupedstats/man/groupedstats-package.Rd |only groupedstats-1.0.0/groupedstats/man/intent_morality.Rd |only groupedstats-1.0.0/groupedstats/man/movies_long.Rd |only groupedstats-1.0.0/groupedstats/man/movies_wide.Rd |only groupedstats-1.0.0/groupedstats/tests/README.md |only groupedstats-1.0.0/groupedstats/tests/testthat |only groupedstats-1.0.0/groupedstats/tests/testthat.R |only groupedstats-1.0.1/groupedstats/DESCRIPTION | 12 groupedstats-1.0.1/groupedstats/MD5 | 73 ++---- groupedstats-1.0.1/groupedstats/NAMESPACE | 7 groupedstats-1.0.1/groupedstats/NEWS.md | 5 groupedstats-1.0.1/groupedstats/R/grouped_aov.R | 15 - groupedstats-1.0.1/groupedstats/R/grouped_glm.R | 63 ++--- groupedstats-1.0.1/groupedstats/R/grouped_glmer.R | 24 - groupedstats-1.0.1/groupedstats/R/grouped_lm.R | 1 groupedstats-1.0.1/groupedstats/R/grouped_lmer.R | 11 groupedstats-1.0.1/groupedstats/R/grouped_p_value.R | 12 groupedstats-1.0.1/groupedstats/R/grouped_proptest.R | 9 groupedstats-1.0.1/groupedstats/R/grouped_slr.R | 1 groupedstats-1.0.1/groupedstats/R/grouped_summary.R | 13 - groupedstats-1.0.1/groupedstats/R/grouped_ttest.R | 1 groupedstats-1.0.1/groupedstats/R/grouped_wilcox.R | 1 groupedstats-1.0.1/groupedstats/README.md | 146 +++++------- groupedstats-1.0.1/groupedstats/inst/WORDLIST | 11 groupedstats-1.0.1/groupedstats/man/grouped_aov.Rd | 17 - groupedstats-1.0.1/groupedstats/man/grouped_glm.Rd | 24 - groupedstats-1.0.1/groupedstats/man/grouped_glmer.Rd | 28 -- groupedstats-1.0.1/groupedstats/man/grouped_lm.Rd | 3 groupedstats-1.0.1/groupedstats/man/grouped_lmer.Rd | 4 groupedstats-1.0.1/groupedstats/man/grouped_proptest.Rd | 3 groupedstats-1.0.1/groupedstats/man/grouped_slr.Rd | 3 groupedstats-1.0.1/groupedstats/man/grouped_summary.Rd | 5 groupedstats-1.0.1/groupedstats/man/grouped_ttest.Rd | 3 groupedstats-1.0.1/groupedstats/man/grouped_wilcox.Rd | 3 38 files changed, 166 insertions(+), 332 deletions(-)
Title: Tidy Interface to 'data.table'
Description: Tidy interface to 'data.table'. 'rlang' compatible, which allows the user to build custom functions much like they would in the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Lionel Henry [ctb],
Matt Carlson [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.5.0 dated 2020-05-23 and 0.5.1 dated 2020-05-29
DESCRIPTION | 6 ++--- MD5 | 31 ++++++++++++++++------------- NAMESPACE | 7 +++++- NEWS.md | 7 ++++++ R/bind.R | 21 ++++--------------- R/distinct.R | 5 +++- R/fill.R | 8 +++---- R/map.R | 5 ++-- R/map2.R | 14 +------------ R/mutate_across.R | 3 -- R/summarize_across.R |only R/tidytable_package.R | 7 +++--- README.md | 35 ++++++++++++++++----------------- man/map..Rd | 5 ++-- man/mutate_across..Rd | 3 -- man/summarize_across..Rd |only tests/testthat/test-distinct.R | 4 +-- tests/testthat/test-summarize_across.R |only 18 files changed, 79 insertions(+), 82 deletions(-)
Title: A Graphical Interface to Perform STOCSY Analyses on NMR Data
Description: Launches a 'shiny' based application for Nuclear Magnetic Resonance (NMR) data importation and Statistical TOtal Correlation SpectroscopY (STOCSY) analyses in a full interactive approach. The theoretical background and applications of STOCSY method could be found at Cloarec, O., Dumas, M. E., Craig, A., Barton, R. H., Trygg, J., Hudson, J., Blancher, C., Gauguier, D., Lindon, J. C., Holmes, E. & Nicholson, J. (2005) <doi:10.1021/ac048630x>.
Author: Luiz Henrique Keng Queiroz Junior[aut,cre], Vitor Mendes de Oliveira [aut]
Maintainer: Luiz Henrique Keng Queiroz Junior <keng@ufg.br>
Diff between iSTATS versions 1.2 dated 2020-02-11 and 1.3 dated 2020-05-29
iSTATS-1.2/iSTATS/data/datalist |only iSTATS-1.2/iSTATS/inst/app/www/ISTATS.1.png |only iSTATS-1.2/iSTATS/inst/app/www/ISTATS.2.png |only iSTATS-1.2/iSTATS/inst/app/www/ISTATS.png |only iSTATS-1.2/iSTATS/inst/app/www/epsspec.png |only iSTATS-1.2/iSTATS/inst/app/www/fluxogram.png |only iSTATS-1.2/iSTATS/inst/app/www/jpegspec.png |only iSTATS-1.3/iSTATS/DESCRIPTION | 15 iSTATS-1.3/iSTATS/MD5 | 62 - iSTATS-1.3/iSTATS/R/main.R | 68 - iSTATS-1.3/iSTATS/inst/app/Pretreatment_server.R |only iSTATS-1.3/iSTATS/inst/app/Pretreatment_ui.R |only iSTATS-1.3/iSTATS/inst/app/about_ui.R | 26 iSTATS-1.3/iSTATS/inst/app/example_data_server.R | 13 iSTATS-1.3/iSTATS/inst/app/functions.R | 500 +++++++++--- iSTATS-1.3/iSTATS/inst/app/global.R | 83 +- iSTATS-1.3/iSTATS/inst/app/home_ui.R | 2 iSTATS-1.3/iSTATS/inst/app/plot_interativo_server.R | 458 +++++------ iSTATS-1.3/iSTATS/inst/app/select_signals_server.R | 533 +++---------- iSTATS-1.3/iSTATS/inst/app/select_signals_ui.R | 30 iSTATS-1.3/iSTATS/inst/app/server.R | 13 iSTATS-1.3/iSTATS/inst/app/stocsy_i_server.R | 812 ++++++++------------ iSTATS-1.3/iSTATS/inst/app/stocsy_i_ui.R | 268 +++--- iSTATS-1.3/iSTATS/inst/app/stocsy_is_server.R | 10 iSTATS-1.3/iSTATS/inst/app/stocsy_is_ui.R | 2 iSTATS-1.3/iSTATS/inst/app/stocsy_rt_server.R | 14 iSTATS-1.3/iSTATS/inst/app/stocsy_rt_ui.R | 2 iSTATS-1.3/iSTATS/inst/app/ui.R | 148 +-- iSTATS-1.3/iSTATS/inst/app/uploader_server.R | 317 ++----- iSTATS-1.3/iSTATS/inst/app/uploader_server_CSV.R | 466 +++++------ iSTATS-1.3/iSTATS/inst/app/uploader_server_Rdata.R | 222 ++--- iSTATS-1.3/iSTATS/inst/app/www/download_buckets.png |only iSTATS-1.3/iSTATS/inst/app/www/download_points.png |only iSTATS-1.3/iSTATS/inst/app/www/istats1.gif |only iSTATS-1.3/iSTATS/inst/app/www/zoo.css | 275 +++--- iSTATS-1.3/iSTATS/man/CS_values_real.Rd | 4 iSTATS-1.3/iSTATS/man/NMRData.Rd | 4 iSTATS-1.3/iSTATS/man/file_names.Rd | 4 38 files changed, 2066 insertions(+), 2285 deletions(-)
Title: Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Description: Provides a list of functions for the statistical analysis of archaeological dates and groups of dates (see <doi:10.18637/jss.v093.c01> for a description). It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior distribution of a series of dates. Such output can be simulated by different applications as for instance 'ChronoModel' (see <http://www.chronomodel.fr>), 'Oxcal' (see <https://c14.arch.ox.ac.uk/oxcal.html>) or 'BCal' (see <http://bcal.shef.ac.uk/>). The only requirement is to have a csv file containing a sample from the posterior distribution.
Author: Anne Philippe [aut, cre],
Marie-Anne Vibet [aut],
Thomas S. Dye [ctb]
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between ArchaeoPhases versions 1.4 dated 2019-01-02 and 1.4.5 dated 2020-05-29
DESCRIPTION | 12 +++++------ MD5 | 48 ++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/CITATION | 32 ++++++++++++++++------------- inst/doc/GroupsOfDates.Rmd | 4 +-- inst/doc/GroupsOfDates.html | 8 +++---- inst/doc/Introduction.Rmd | 4 +-- inst/doc/Introduction.html | 10 ++++----- inst/doc/SeriesOfDates.Rmd | 4 +-- inst/doc/SeriesOfDates.html | 33 +++++++++++++++++++++++++----- man/CreateMinMaxGroup.Rd | 2 - man/ImportCSV.BCal.Rd | 4 +-- man/ImportCSV.Rd | 12 +++++------ man/MarginalPlot.Rd | 2 - man/MultiPhasePlot.Rd | 2 - man/MultiSuccessionPlot.Rd | 5 +++- man/OccurrencePlot.Rd | 3 ++ man/PhasePlot.Rd | 9 +++++--- man/PhaseTimeRange.Rd | 8 +++++++ man/PhasesGap.Rd | 3 ++ man/PhasesTransition.Rd | 4 ++- man/SuccessionPlot.Rd | 4 +-- vignettes/GroupsOfDates.Rmd | 4 +-- vignettes/Introduction.Rmd | 4 +-- vignettes/SeriesOfDates.Rmd | 4 +-- 25 files changed, 135 insertions(+), 90 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.1.0 dated 2020-05-27 and 2.1.1 dated 2020-05-29
DESCRIPTION | 8 MD5 | 14 - NEWS.md | 6 R/fbGetCostData.R | 2 build/partial.rdb |binary inst/doc/rfacebookstat-authorization.html | 60 +++---- inst/doc/rfacebookstat-cost-data.html | 86 +++++----- inst/doc/rfacebookstat-get-statistics.html | 238 ++++++++++++++--------------- 8 files changed, 213 insertions(+), 201 deletions(-)
Title: Nucleome Imaging Toolbox
Description: Tools for 4D nucleome imaging.
Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.
See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <stats@volkerschmid.de>
Diff between nucim versions 1.0.6 dated 2018-10-09 and 1.0.9 dated 2020-05-29
nucim-1.0.6/nucim/inst/doc/publications.R |only nucim-1.0.6/nucim/inst/doc/publications.Rmd |only nucim-1.0.6/nucim/inst/doc/publications.html |only nucim-1.0.9/nucim/DESCRIPTION | 21 nucim-1.0.9/nucim/MD5 | 77 +- nucim-1.0.9/nucim/NEWS | 8 nucim-1.0.9/nucim/R/classes.R | 1 nucim-1.0.9/nucim/R/colorsinclasses.R | 14 nucim-1.0.9/nucim/R/plot_classify_folder.R | 1 nucim-1.0.9/nucim/R/plot_nearest_class_folder.R | 2 nucim-1.0.9/nucim/R/splitchannels.R | 4 nucim-1.0.9/nucim/R/spots_combined.R | 13 nucim-1.0.9/nucim/README.md | 10 nucim-1.0.9/nucim/build/vignette.rds |binary nucim-1.0.9/nucim/inst/doc/DAPIclassification.Rmd | 4 nucim-1.0.9/nucim/inst/doc/DAPIclassification.html | 217 ++++++ nucim-1.0.9/nucim/inst/doc/workflow.html | 426 ++++++++++--- nucim-1.0.9/nucim/inst/doc/workflow_many.Rmd | 4 nucim-1.0.9/nucim/inst/doc/workflow_many.html | 217 ++++++ nucim-1.0.9/nucim/man/barplot_with_interval.Rd | 11 nucim-1.0.9/nucim/man/barplot_with_interval_23.Rd | 10 nucim-1.0.9/nucim/man/classify.folder.Rd | 3 nucim-1.0.9/nucim/man/colors.in.classes.Rd | 26 nucim-1.0.9/nucim/man/colors.in.classes.folder.Rd | 17 nucim-1.0.9/nucim/man/compute.distance2border.Rd | 10 nucim-1.0.9/nucim/man/dapimask.Rd | 10 nucim-1.0.9/nucim/man/dapimask.file.Rd | 10 nucim-1.0.9/nucim/man/dapimask.folder.Rd | 9 nucim-1.0.9/nucim/man/find.spots.file.Rd | 12 nucim-1.0.9/nucim/man/find.spots.folder.Rd | 10 nucim-1.0.9/nucim/man/nearestClassDistances.folder.Rd | 9 nucim-1.0.9/nucim/man/plot_classify.folder.Rd | 9 nucim-1.0.9/nucim/man/plot_nearestClassDistances.folder.Rd | 11 nucim-1.0.9/nucim/man/splitchannels.Rd | 2 nucim-1.0.9/nucim/man/splitchannels.file.Rd | 2 nucim-1.0.9/nucim/man/splitchannels.folder.Rd | 8 nucim-1.0.9/nucim/man/spots.combined.Rd | 19 nucim-1.0.9/nucim/man/spots.combined.file.Rd | 17 nucim-1.0.9/nucim/man/spots.combined.folder.Rd | 17 nucim-1.0.9/nucim/vignettes/DAPIclassification.Rmd | 4 nucim-1.0.9/nucim/vignettes/workflow_many.Rmd | 4 41 files changed, 1022 insertions(+), 227 deletions(-)
Title: Create Custom 'Bootstrap' Themes to Use in 'Shiny'
Description: Customize 'Bootstrap' and 'Bootswatch' themes, like colors, fonts, grid layout,
to use in 'Shiny' applications, 'rmarkdown' documents and 'flexdashboard'.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Thomas Park [ctb, cph] (Bootswatch themes),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
onkbear [ctb, cph] (admin-lte-2-sass),
Colorlib [ctb, cph] (AdminLTE)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between fresh versions 0.1.0 dated 2019-10-21 and 0.2.0 dated 2020-05-29
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Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame
like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Lionel Henry [aut],
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 0.8.5 dated 2020-03-07 and 1.0.0 dated 2020-05-29
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Title: Basic Biological Sequence Handling
Description: Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.
Author: Lars Snipen, Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Diff between microseq versions 2.0 dated 2020-01-09 and 2.1 dated 2020-05-29
microseq-2.0/microseq/src/read_file.cpp |only microseq-2.1/microseq/DESCRIPTION | 12 ++--- microseq-2.1/microseq/MD5 | 27 +++++------ microseq-2.1/microseq/NAMESPACE | 4 + microseq-2.1/microseq/R/RcppExports.R | 20 -------- microseq-2.1/microseq/R/fasta.R | 52 +++++++++++++---------- microseq-2.1/microseq/R/fastq.R | 41 ++++++++++-------- microseq-2.1/microseq/build/vignette.rds |binary microseq-2.1/microseq/inst/doc/vignette.Rnw | 4 - microseq-2.1/microseq/inst/doc/vignette.pdf |binary microseq-2.1/microseq/man/readFasta.Rd | 18 ++++--- microseq-2.1/microseq/man/readFastq.Rd | 12 +++-- microseq-2.1/microseq/src/RcppExports.cpp | 61 --------------------------- microseq-2.1/microseq/src/init.c | 16 +++---- microseq-2.1/microseq/vignettes/vignette.Rnw | 4 - 15 files changed, 105 insertions(+), 166 deletions(-)
Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.4.14 dated 2020-05-01 and 0.4.15 dated 2020-05-29
DESCRIPTION | 8 - MD5 | 47 +++++--- NAMESPACE | 9 + NEWS.md | 27 +++++ R/Apply.R | 9 + R/Unary.R | 175 +++++++++++++++++--------------- R/Utilities.R | 188 +++++++++++++++-------------------- R/notation.R |only README.md | 4 build/vignette.rds |binary inst/CITATION | 4 inst/doc/about-vector-arguments.R |only inst/doc/about-vector-arguments.Rmd |only inst/doc/about-vector-arguments.html |only inst/doc/applybyname-vignette.html | 4 inst/doc/matsbyname.html | 4 man/aggregate_to_pref_suff_byname.Rd | 38 ++----- man/clean_byname.Rd | 23 ++-- man/matricize_byname.Rd | 19 +-- man/prep_vector_arg.Rd | 2 man/prepare_.FUNdots.Rd | 4 man/rename_to_pref_suff_byname.Rd | 34 +----- man/row-col-notation.Rd |only man/vectorize_byname.Rd | 23 +--- tests/testthat/test_Unary.R | 114 +++++++++++++-------- tests/testthat/test_Utilities.R | 79 ++++++++++---- tests/testthat/test_notation.R |only vignettes/about-vector-arguments.Rmd |only 28 files changed, 450 insertions(+), 365 deletions(-)
Title: Tools for Microscopy Imaging
Description: Tools for 3D imaging, mostly for biology/microscopy.
Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
Author: Volker Schmid [aut, cre],
Priyanka Kukreja [ctb],
Fabian Scheipl [ctb]
Maintainer: Volker Schmid <stats@volkerschmid.de>
Diff between bioimagetools versions 1.1.4 dated 2020-01-15 and 1.1.5 dated 2020-05-29
DESCRIPTION | 10 +-- MD5 | 34 ++++++++-- NEWS | 3 R/readtif.R | 130 +++++++++++++++++++++--------------------- R/segmentoutside.R | 3 README.md | 7 +- build/vignette.rds |binary inst/doc/readwriteplot.html | 105 +++++++++++++++++++-------------- man/readTIF.Rd | 2 man/segment.outside.Rd | 2 vignettes/readwriteplot_cache |only 11 files changed, 171 insertions(+), 125 deletions(-)
Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, endogenous targeting and model renormalization.
Author: Andrea Luciani [aut, cre],
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
Diff between bimets versions 1.4.3 dated 2020-03-17 and 1.5.0 dated 2020-05-29
bimets-1.4.3/bimets/inst/Licence.pdf |only bimets-1.5.0/bimets/DESCRIPTION | 8 bimets-1.5.0/bimets/MD5 | 186 bimets-1.5.0/bimets/NEWS.md | 18 bimets-1.5.0/bimets/R/bimets_model_functions.R |14182 ++++++------ bimets-1.5.0/bimets/R/bimets_ts_functions.R | 94 bimets-1.5.0/bimets/README.md | 47 bimets-1.5.0/bimets/build/vignette.rds |binary bimets-1.5.0/bimets/data/bimets_12F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_12L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_12_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_1F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_1L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_1_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_24F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_24L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_24_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_2F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_2L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_2_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_366_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_366_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_36F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_36L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_36_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_3F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_3L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_3_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_4F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_4L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_4_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_53F_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_53L_YP2D__.RData |binary bimets-1.5.0/bimets/data/bimets_53_D2YP__.RData |binary bimets-1.5.0/bimets/data/bimets_static_G90__.RData |binary bimets-1.5.0/bimets/data/bimets_static_TD90__.RData |binary bimets-1.5.0/bimets/data/bimets_static_startYear___.RData |binary bimets-1.5.0/bimets/data/bimets_static_totalLength___.RData |binary bimets-1.5.0/bimets/inst/doc/bimets.R | 1085 bimets-1.5.0/bimets/inst/doc/bimets.Rnw | 122 bimets-1.5.0/bimets/inst/doc/bimets.pdf |binary bimets-1.5.0/bimets/man/A1D.Rd | 14 bimets-1.5.0/bimets/man/ANNUAL.Rd | 6 bimets-1.5.0/bimets/man/CUMPROD.Rd | 16 bimets-1.5.0/bimets/man/CUMSUM.Rd | 18 bimets-1.5.0/bimets/man/DAILY.Rd | 8 bimets-1.5.0/bimets/man/ELIMELS.Rd | 4 bimets-1.5.0/bimets/man/ESTIMATE.Rd | 61 bimets-1.5.0/bimets/man/GETDATE.Rd | 48 bimets-1.5.0/bimets/man/GETYEARPERIOD.Rd | 32 bimets-1.5.0/bimets/man/INTS.Rd | 16 bimets-1.5.0/bimets/man/LOAD_MODEL.Rd | 14 bimets-1.5.0/bimets/man/LOAD_MODEL_DATA.Rd | 8 bimets-1.5.0/bimets/man/LOCS.Rd | 10 bimets-1.5.0/bimets/man/MDL.Rd | 165 bimets-1.5.0/bimets/man/MONTHLY.Rd | 8 bimets-1.5.0/bimets/man/MOVAVG.Rd | 18 bimets-1.5.0/bimets/man/MOVTOT.Rd | 18 bimets-1.5.0/bimets/man/MULTMATRIX.Rd | 16 bimets-1.5.0/bimets/man/NAMELIST.Rd | 12 bimets-1.5.0/bimets/man/NOELS.Rd | 12 bimets-1.5.0/bimets/man/NUMPERIOD.Rd | 2 bimets-1.5.0/bimets/man/QUARTERLY.Rd | 16 bimets-1.5.0/bimets/man/RENORM.Rd | 43 bimets-1.5.0/bimets/man/SEMIANNUAL.Rd | 12 bimets-1.5.0/bimets/man/SIMULATE.Rd | 47 bimets-1.5.0/bimets/man/TABIT.Rd | 32 bimets-1.5.0/bimets/man/TSDELTA.Rd | 13 bimets-1.5.0/bimets/man/TSDELTALOG.Rd |only bimets-1.5.0/bimets/man/TSDELTAP.Rd | 14 bimets-1.5.0/bimets/man/TSERIES.Rd | 36 bimets-1.5.0/bimets/man/TSEXTEND.Rd | 24 bimets-1.5.0/bimets/man/TSINFO.Rd | 20 bimets-1.5.0/bimets/man/TSJOIN.Rd | 26 bimets-1.5.0/bimets/man/TSLAG.Rd | 16 bimets-1.5.0/bimets/man/TSLEAD.Rd | 8 bimets-1.5.0/bimets/man/TSLOOK.Rd | 14 bimets-1.5.0/bimets/man/TSMERGE.Rd | 24 bimets-1.5.0/bimets/man/TSPROJECT.Rd | 8 bimets-1.5.0/bimets/man/TSTRIM.Rd | 18 bimets-1.5.0/bimets/man/as.bimets.Rd | 56 bimets-1.5.0/bimets/man/bimets-package.Rd | 231 bimets-1.5.0/bimets/man/bimetsConf.Rd | 46 bimets-1.5.0/bimets/man/date2yp.Rd | 14 bimets-1.5.0/bimets/man/frequency.Rd | 16 bimets-1.5.0/bimets/man/fromBIMETStoTS.Rd | 34 bimets-1.5.0/bimets/man/fromBIMETStoXTS.Rd | 44 bimets-1.5.0/bimets/man/fromTStoXTS.Rd | 74 bimets-1.5.0/bimets/man/fromXTStoTS.Rd | 74 bimets-1.5.0/bimets/man/idxOver.Rd | 146 bimets-1.5.0/bimets/man/is.bimets.Rd | 94 bimets-1.5.0/bimets/man/normalizeYP.Rd | 2 bimets-1.5.0/bimets/man/summary.BIMETS_MODEL.Rd | 14 bimets-1.5.0/bimets/man/ym2yp.Rd | 2 bimets-1.5.0/bimets/vignettes/bimets.Rnw | 122 95 files changed, 9449 insertions(+), 8139 deletions(-)
Title: Conversion of R Regression Output to LaTeX or HTML Tables
Description: Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented. (If the Zelig package, which this package enhances, cannot be found on CRAN, you can find it at <https://github.com/IQSS/Zelig>.)
Author: Philip Leifeld [aut, cre],
Claudia Zucca [ctb]
Maintainer: Philip Leifeld <philip.leifeld@essex.ac.uk>
Diff between texreg versions 1.36.23 dated 2017-03-03 and 1.37.1 dated 2020-05-29
texreg-1.36.23/texreg/R/classDefinition.R |only texreg-1.36.23/texreg/R/internal.R |only texreg-1.36.23/texreg/R/plotreg.R |only texreg-1.36.23/texreg/inst/doc/texreg.R |only texreg-1.36.23/texreg/man/print-texregTable.Rd |only texreg-1.37.1/texreg/DESCRIPTION | 48 texreg-1.37.1/texreg/MD5 | 181 texreg-1.37.1/texreg/NAMESPACE | 152 texreg-1.37.1/texreg/R/extract.R | 7247 +++++++++--- texreg-1.37.1/texreg/R/praise.R |only texreg-1.37.1/texreg/R/texreg.R | 5083 +++++++- texreg-1.37.1/texreg/build/vignette.rds |binary texreg-1.37.1/texreg/inst/CITATION | 38 texreg-1.37.1/texreg/inst/doc/texreg.Rnw | 943 - texreg-1.37.1/texreg/inst/doc/texreg.pdf |binary texreg-1.37.1/texreg/man/coeftostring.Rd | 41 texreg-1.37.1/texreg/man/compute.width.Rd |only texreg-1.37.1/texreg/man/createTexreg.Rd | 141 texreg-1.37.1/texreg/man/customcolumnnames.Rd |only texreg-1.37.1/texreg/man/extract-ANY-method.Rd |only texreg-1.37.1/texreg/man/extract-Arima-method.Rd |only texreg-1.37.1/texreg/man/extract-H2OBinomialModel-method.Rd |only texreg-1.37.1/texreg/man/extract-Zelig-method.Rd |only texreg-1.37.1/texreg/man/extract-aftreg-method.Rd |only texreg-1.37.1/texreg/man/extract-averaging-method.Rd |only texreg-1.37.1/texreg/man/extract-bam-method.Rd |only texreg-1.37.1/texreg/man/extract-betamfx-method.Rd |only texreg-1.37.1/texreg/man/extract-betaor-method.Rd |only texreg-1.37.1/texreg/man/extract-betareg-method.Rd |only texreg-1.37.1/texreg/man/extract-bife-method.Rd |only texreg-1.37.1/texreg/man/extract-biglm-method.Rd |only texreg-1.37.1/texreg/man/extract-brglm-method.Rd |only texreg-1.37.1/texreg/man/extract-brmsfit-method.Rd |only texreg-1.37.1/texreg/man/extract-btergm-method.Rd |only texreg-1.37.1/texreg/man/extract-censReg-method.Rd |only texreg-1.37.1/texreg/man/extract-clm-method.Rd |only texreg-1.37.1/texreg/man/extract-clmm-method.Rd |only texreg-1.37.1/texreg/man/extract-clogit-method.Rd |only texreg-1.37.1/texreg/man/extract-coeftest-method.Rd |only texreg-1.37.1/texreg/man/extract-coxph-method.Rd |only texreg-1.37.1/texreg/man/extract-coxph.penal-method.Rd |only texreg-1.37.1/texreg/man/extract-coxreg-method.Rd |only texreg-1.37.1/texreg/man/extract-dynlm-method.Rd |only texreg-1.37.1/texreg/man/extract-ergm-method.Rd |only texreg-1.37.1/texreg/man/extract-ergmm-method.Rd |only texreg-1.37.1/texreg/man/extract-ets-method.Rd |only texreg-1.37.1/texreg/man/extract-fGARCH-method.Rd |only texreg-1.37.1/texreg/man/extract-feglm-method.Rd |only texreg-1.37.1/texreg/man/extract-feis-method.Rd |only texreg-1.37.1/texreg/man/extract-felm-method.Rd |only texreg-1.37.1/texreg/man/extract-forecast-method.Rd |only texreg-1.37.1/texreg/man/extract-forecast_ARIMA-method.Rd |only texreg-1.37.1/texreg/man/extract-gam-method.Rd |only texreg-1.37.1/texreg/man/extract-gamlss-method.Rd |only texreg-1.37.1/texreg/man/extract-gamlssZadj-method.Rd |only texreg-1.37.1/texreg/man/extract-gee-method.Rd |only texreg-1.37.1/texreg/man/extract-geeglm-method.Rd |only texreg-1.37.1/texreg/man/extract-gel-method.Rd |only texreg-1.37.1/texreg/man/extract-glm-method.Rd |only texreg-1.37.1/texreg/man/extract-glm.cluster-method.Rd |only texreg-1.37.1/texreg/man/extract-glmerMod-method.Rd |only texreg-1.37.1/texreg/man/extract-glmmPQL-method.Rd |only texreg-1.37.1/texreg/man/extract-glmmTMB-method.Rd |only texreg-1.37.1/texreg/man/extract-glmmadmb-method.Rd |only texreg-1.37.1/texreg/man/extract-glmrob-method.Rd |only texreg-1.37.1/texreg/man/extract-gls-method.Rd |only texreg-1.37.1/texreg/man/extract-gmm-method.Rd |only texreg-1.37.1/texreg/man/extract-gnls-method.Rd |only texreg-1.37.1/texreg/man/extract-gnm-method.Rd |only texreg-1.37.1/texreg/man/extract-hurdle-method.Rd |only texreg-1.37.1/texreg/man/extract-ivreg-method.Rd |only texreg-1.37.1/texreg/man/extract-lm-method.Rd |only texreg-1.37.1/texreg/man/extract-lm.cluster-method.Rd |only texreg-1.37.1/texreg/man/extract-lme-method.Rd |only texreg-1.37.1/texreg/man/extract-lme4-method.Rd |only texreg-1.37.1/texreg/man/extract-lmerMod-method.Rd |only texreg-1.37.1/texreg/man/extract-lmrob-method.Rd |only texreg-1.37.1/texreg/man/extract-lnam-method.Rd |only texreg-1.37.1/texreg/man/extract-logitmfx-method.Rd |only texreg-1.37.1/texreg/man/extract-logitor-method.Rd |only texreg-1.37.1/texreg/man/extract-lqmm-method.Rd |only texreg-1.37.1/texreg/man/extract-lrm-method.Rd |only texreg-1.37.1/texreg/man/extract-maBina-method.Rd |only texreg-1.37.1/texreg/man/extract-merMod-method.Rd |only texreg-1.37.1/texreg/man/extract-mhurdle-method.Rd |only texreg-1.37.1/texreg/man/extract-mlogit-method.Rd |only texreg-1.37.1/texreg/man/extract-mnlogit-method.Rd |only texreg-1.37.1/texreg/man/extract-model.selection-method.Rd |only texreg-1.37.1/texreg/man/extract-mtergm-method.Rd |only texreg-1.37.1/texreg/man/extract-multinom-method.Rd |only texreg-1.37.1/texreg/man/extract-negbin-method.Rd |only texreg-1.37.1/texreg/man/extract-negbinirr-method.Rd |only texreg-1.37.1/texreg/man/extract-negbinmfx-method.Rd |only texreg-1.37.1/texreg/man/extract-netlogit-method.Rd |only texreg-1.37.1/texreg/man/extract-nlme-method.Rd |only texreg-1.37.1/texreg/man/extract-nlmerMod-method.Rd |only texreg-1.37.1/texreg/man/extract-oglmx-method.Rd |only texreg-1.37.1/texreg/man/extract-ols-method.Rd |only texreg-1.37.1/texreg/man/extract-panelAR-method.Rd |only texreg-1.37.1/texreg/man/extract-pglm-method.Rd |only texreg-1.37.1/texreg/man/extract-pgmm-method.Rd |only texreg-1.37.1/texreg/man/extract-phreg-method.Rd |only texreg-1.37.1/texreg/man/extract-plm-method.Rd |only texreg-1.37.1/texreg/man/extract-pmg-method.Rd |only texreg-1.37.1/texreg/man/extract-poissonirr-method.Rd |only texreg-1.37.1/texreg/man/extract-poissonmfx-method.Rd |only texreg-1.37.1/texreg/man/extract-polr-method.Rd |only texreg-1.37.1/texreg/man/extract-probitmfx-method.Rd |only texreg-1.37.1/texreg/man/extract-rem.dyad-method.Rd |only texreg-1.37.1/texreg/man/extract-rlm-method.Rd |only texreg-1.37.1/texreg/man/extract-rq-method.Rd |only texreg-1.37.1/texreg/man/extract-sarlm-method.Rd |only texreg-1.37.1/texreg/man/extract-sclm-method.Rd |only texreg-1.37.1/texreg/man/extract-selection-method.Rd |only texreg-1.37.1/texreg/man/extract-sienaFit-method.Rd |only texreg-1.37.1/texreg/man/extract-simex-method.Rd |only texreg-1.37.1/texreg/man/extract-speedglm-method.Rd |only texreg-1.37.1/texreg/man/extract-speedlm-method.Rd |only texreg-1.37.1/texreg/man/extract-stergm-method.Rd |only texreg-1.37.1/texreg/man/extract-summary.lm-method.Rd |only texreg-1.37.1/texreg/man/extract-survreg-method.Rd |only texreg-1.37.1/texreg/man/extract-survreg.penal-method.Rd |only texreg-1.37.1/texreg/man/extract-svyglm-method.Rd |only texreg-1.37.1/texreg/man/extract-systemfit-method.Rd |only texreg-1.37.1/texreg/man/extract-texreg-method.Rd |only texreg-1.37.1/texreg/man/extract-tobit-method.Rd |only texreg-1.37.1/texreg/man/extract-vglm-method.Rd |only texreg-1.37.1/texreg/man/extract-weibreg-method.Rd |only texreg-1.37.1/texreg/man/extract-wls-method.Rd |only texreg-1.37.1/texreg/man/extract-zeroinfl-method.Rd |only texreg-1.37.1/texreg/man/extract.Rd | 1060 - texreg-1.37.1/texreg/man/get.data.Rd |only texreg-1.37.1/texreg/man/get_stars_note.Rd |only texreg-1.37.1/texreg/man/htmlreg.Rd |only texreg-1.37.1/texreg/man/huxtablereg.Rd |only texreg-1.37.1/texreg/man/knitreg.Rd |only texreg-1.37.1/texreg/man/matrixreg.Rd |only texreg-1.37.1/texreg/man/names2latex.Rd |only texreg-1.37.1/texreg/man/override.Rd |only texreg-1.37.1/texreg/man/plotreg.Rd | 373 texreg-1.37.1/texreg/man/praise.Rd |only texreg-1.37.1/texreg/man/print.texregTable.Rd |only texreg-1.37.1/texreg/man/reorder.Rd |only texreg-1.37.1/texreg/man/screenreg.Rd |only texreg-1.37.1/texreg/man/show-texreg-method.Rd |only texreg-1.37.1/texreg/man/texreg-class.Rd |only texreg-1.37.1/texreg/man/texreg-package.Rd | 60 texreg-1.37.1/texreg/man/texreg.Rd | 646 - texreg-1.37.1/texreg/man/wordreg.Rd |only texreg-1.37.1/texreg/tests |only texreg-1.37.1/texreg/vignettes/texreg.Rnw | 943 - 151 files changed, 12175 insertions(+), 4781 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.8.0 dated 2020-04-29 and 0.8.6 dated 2020-05-29
DESCRIPTION | 8 MD5 | 18 - R/create_filter_table.R | 37 ++- R/filter_raw_data.R | 20 +- R/get_eurostat_bulk.R | 35 +-- R/get_eurostat_data.R | 426 +++++++++++++++++++++++----------------------- R/get_eurostat_dsd.R | 2 R/get_eurostat_raw.R | 146 +++++++-------- R/load_cfg.R | 1 tests/testthat/test-all.R | 121 +++++++------ 10 files changed, 422 insertions(+), 392 deletions(-)
Title: Read/Write, Transform, and Summarize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Features include reading/writing all 'BIOM' formats, rarefaction, alpha
diversity, beta diversity (including 'UniFrac'), summarizing counts by
taxonomic level, and sample subsetting. Standalone functions for
reading, writing, and subsetting phylogenetic trees are also provided.
All CPU intensive operations are encoded in C with multi-thread support.
Author: Daniel P. Smith [aut, cre, cph]
(<https://orcid.org/0000-0002-2479-2044>)
Maintainer: Daniel P. Smith <dansmith@orst.edu>
Diff between rbiom versions 1.0.0 dated 2020-05-26 and 1.0.2 dated 2020-05-29
rbiom-1.0.0/rbiom/inst/extdata/hmp50.biom |only rbiom-1.0.2/rbiom/DESCRIPTION | 14 rbiom-1.0.2/rbiom/MD5 | 84 rbiom-1.0.2/rbiom/R/accessors.r | 500 ++--- rbiom-1.0.2/rbiom/R/alpha.div.r | 2 rbiom-1.0.2/rbiom/R/beta.div.r | 2 rbiom-1.0.2/rbiom/R/print.r | 82 rbiom-1.0.2/rbiom/R/rarefy.r | 2 rbiom-1.0.2/rbiom/R/rbiom.r | 59 rbiom-1.0.2/rbiom/R/read.biom.r | 1620 +++++++++---------- rbiom-1.0.2/rbiom/R/select.r | 141 - rbiom-1.0.2/rbiom/R/subset.r | 54 rbiom-1.0.2/rbiom/R/taxa.rollup.r | 2 rbiom-1.0.2/rbiom/R/unifrac.r | 2 rbiom-1.0.2/rbiom/R/write.biom.r | 16 rbiom-1.0.2/rbiom/README.md | 4 rbiom-1.0.2/rbiom/inst/extdata/hmp50.bz2 |only rbiom-1.0.2/rbiom/man/alpha.div.Rd | 2 rbiom-1.0.2/rbiom/man/beta.div.Rd | 2 rbiom-1.0.2/rbiom/man/counts.Rd | 2 rbiom-1.0.2/rbiom/man/info.Rd | 2 rbiom-1.0.2/rbiom/man/metadata.Rd | 2 rbiom-1.0.2/rbiom/man/nsamples.Rd | 2 rbiom-1.0.2/rbiom/man/ntaxa.Rd | 2 rbiom-1.0.2/rbiom/man/phylogeny.Rd | 2 rbiom-1.0.2/rbiom/man/print.Rd | 2 rbiom-1.0.2/rbiom/man/rarefy.Rd | 2 rbiom-1.0.2/rbiom/man/rbiom.Rd | 16 rbiom-1.0.2/rbiom/man/read.biom.Rd | 7 rbiom-1.0.2/rbiom/man/sample.names.Rd | 2 rbiom-1.0.2/rbiom/man/select.Rd | 2 rbiom-1.0.2/rbiom/man/sequences.Rd | 2 rbiom-1.0.2/rbiom/man/subset.Rd | 2 rbiom-1.0.2/rbiom/man/taxa.names.Rd | 2 rbiom-1.0.2/rbiom/man/taxa.ranks.Rd | 2 rbiom-1.0.2/rbiom/man/taxa.rollup.Rd | 2 rbiom-1.0.2/rbiom/man/taxonomy.Rd | 2 rbiom-1.0.2/rbiom/man/unifrac.Rd | 2 rbiom-1.0.2/rbiom/man/write.biom.Rd | 4 rbiom-1.0.2/rbiom/src/par_unifrac.cpp | 7 rbiom-1.0.2/rbiom/src/rcpp_rarefy.cpp | 5 rbiom-1.0.2/rbiom/tests/testthat.R | 6 rbiom-1.0.2/rbiom/tests/testthat/test_calculations.r | 5 rbiom-1.0.2/rbiom/tests/testthat/test_file_io.r | 27 44 files changed, 1364 insertions(+), 1335 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover test Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 0.3.1 dated 2020-05-27 and 1.0.0 dated 2020-05-29
DESCRIPTION | 18 - MD5 | 22 - NAMESPACE | 9 NEWS.md | 7 R/games_howell.R | 3 R/global_vars.R | 6 R/helpers.R | 33 ++ R/pairwise_comparisons.R | 188 +++++++------ README.md | 301 +++++++-------------- man/pairwise_comparisons.Rd | 411 ++++++++++++++--------------- tests/testthat/test-pairwise_caption.R | 32 -- tests/testthat/test-pairwise_comparisons.R | 240 +++++++++++++--- 12 files changed, 698 insertions(+), 572 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert [aut] (<https://orcid.org/0000-0001-8009-4665>),
Ivan Kojadinovic [aut] (<https://orcid.org/0000-0002-2903-1543>),
Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Jun Yan [aut] (<https://orcid.org/0000-0003-4401-7296>),
Johanna G. Nešlehová [ctb] (evTestK(),
<https://orcid.org/0000-0001-9634-4796>),
Rebecca Morger [ctb] (fitCopula.ml(): code for free mixCopula weight
parameters)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 0.999-20 dated 2020-02-06 and 1.0-0 dated 2020-05-29
DESCRIPTION | 25 MD5 | 103 +-- NAMESPACE | 8 R/AllGeneric.R | 27 R/aux-acopula.R | 8 R/empCopula.R | 25 R/fitCopula.R | 218 +++++- R/fixedPar.R | 6 R/graphics.R | 2 R/mixCopula.R | 96 ++ R/normalCopula.R | 4 R/pairsRosenblatt.R | 2 R/sysdata.rda |binary R/tCopula.R | 2 TODO | 1 build/partial.rdb |binary build/vignette.rds |binary data/SMI.12.rda |binary data/gasoil.rda |binary data/rdj.rda |binary inst/NEWS.Rd | 29 inst/doc/AC_Liouville.R |only inst/doc/AC_Liouville.html | 544 ++++++---------- inst/doc/AR_Clayton.R |only inst/doc/AR_Clayton.html | 597 +++++++----------- inst/doc/Frank-Rmpfr.pdf |binary inst/doc/GIG.R |only inst/doc/GIG.Rmd | 61 + inst/doc/GIG.html | 944 +++++++++++++---------------- inst/doc/HAXC.R |only inst/doc/HAXC.html | 966 ++++++++++++++---------------- inst/doc/NALC.R |only inst/doc/NALC.html | 909 ++++++++++++---------------- inst/doc/copula_GARCH.R |only inst/doc/copula_GARCH.html | 663 ++++++++------------ inst/doc/dNAC.R |only inst/doc/dNAC.html | 805 +++++++++++-------------- inst/doc/empiricial_copulas.R |only inst/doc/empiricial_copulas.html | 880 ++++++++++++--------------- inst/doc/logL_visualization.R |only inst/doc/logL_visualization.html | 1250 +++++++++++++++++++-------------------- inst/doc/nacopula-pkg.pdf |binary inst/doc/qrng.R |only inst/doc/qrng.Rmd | 9 inst/doc/qrng.html | 1164 +++++++++++++++++------------------- inst/doc/rhoAMH-dilog.pdf |binary inst/doc/wild_animals.R |only inst/doc/wild_animals.Rmd | 5 inst/doc/wild_animals.html | 1165 +++++++++++++++++------------------- inst/rData/GIG_vign-nlogl-gr.rds |only man/fitCopula.Rd | 32 man/fitLambda.Rd | 2 man/getIniParam.Rd |only man/mixCopula.Rd | 21 tests/fitting-ex.R | 19 tests/mixCop-tst.R | 155 +++- vignettes/GIG.Rmd | 61 + vignettes/qrng.Rmd | 9 vignettes/wild_animals.Rmd | 5 59 files changed, 5297 insertions(+), 5525 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative divide
in social science research. It uses a Boolean algorithm that results in a
minimal causal combination that explains a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>),
Ciprian Paduraru [ctb] (<https://orcid.org/0000-0002-4518-374X>),
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/gui/www/lib/jquery-AUTHORS.txt),
lp_solve [cph] (http://lpsolve.sourceforge.net),
Vasil Dinkov [ctb, cph] (jquery.smartmenus.js library),
Dmitry Baranovskiy [ctb, cph] (raphael.js library),
Emmanuel Quentin [ctb, cph] (raphael.inline_text_editing.js library),
Jimmy Breck-McKye [ctb, cph] (raphael-paragraph.js library),
Alrik Thiem [aut] (from version 1.0-0 up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.8 dated 2020-05-27 and 3.8.1 dated 2020-05-29
DESCRIPTION | 8 +- MD5 | 70 +++++++++++++------------- R/minimize.R | 4 + inst/ChangeLog | 2 inst/gui/www/js/maincode.js | 2 inst/staticdocs/CV.html | 4 - inst/staticdocs/LegacyDatasets.html | 4 - inst/staticdocs/Lipset.html | 4 - inst/staticdocs/QCA.package.html | 8 +- inst/staticdocs/RS.html | 4 - inst/staticdocs/SOPexpressions.html | 4 - inst/staticdocs/XYplot.html | 4 - inst/staticdocs/Xplot.html | 4 - inst/staticdocs/calibrate.html | 4 - inst/staticdocs/causalChain.html | 4 - inst/staticdocs/chartFunctions.html | 4 - inst/staticdocs/export.html | 4 - inst/staticdocs/factorize.html | 4 - inst/staticdocs/findRows.html | 4 - inst/staticdocs/findTh.html | 4 - inst/staticdocs/fuzzyops.html | 4 - inst/staticdocs/generate.html | 4 - inst/staticdocs/implicantMatrixFunctions.html | 4 - inst/staticdocs/index.html | 4 - inst/staticdocs/intersection.html | 4 - inst/staticdocs/minimize.html | 4 - inst/staticdocs/modelFit.html | 4 - inst/staticdocs/negate.html | 4 - inst/staticdocs/pof.html | 4 - inst/staticdocs/recode.html | 4 - inst/staticdocs/retention.html | 4 - inst/staticdocs/runGUI.html | 4 - inst/staticdocs/subsetsAndSupersets.html | 4 - inst/staticdocs/truthTable.html | 4 - man/QCA.package.Rd | 4 - src/Makevars | 4 - 36 files changed, 109 insertions(+), 105 deletions(-)
Title: Quantification of Asymmetric Dependence
Description: A copula-based measure for quantifying asymmetry in dependence and associations.
Author: Florian Griessenberger [aut, cre],
Robert R. Junker [aut],
Wolfgang Trutschnig [aut]
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between qad versions 0.1.2 dated 2020-03-23 and 0.2.0 dated 2020-05-29
DESCRIPTION | 25 +- MD5 | 31 ++- NAMESPACE | 5 R/emp_c_copula.R | 37 ++-- R/plots.R | 178 ++++++------------- R/qad.R | 276 +++++++++++++++++++++++-------- R/sysdata.rda |only R/utility_functions.R | 48 +++++ man/cci.Rd | 18 -- man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-unnamed-chunk-2-1.png |only man/figures/README-unnamed-chunk-2-2.png |only man/heatmap.qad.Rd | 2 man/mcData_independence.Rd |only man/pairwise.qad.Rd | 24 +- man/qad.Rd | 29 +-- man/qad_distribution.Rd |only 19 files changed, 404 insertions(+), 269 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between FrF2 versions 2.2 dated 2020-04-23 and 2.2-1 dated 2020-05-29
DESCRIPTION | 8 MD5 | 22 R/colpick.R | 4 inst/NEWS | 6 tests/FrF2test.R | 2 tests/FrF2test.Rout.save | 1374 +++++++++++++++++------------ tests/addcentertest.Rout.save | 36 tests/foldtest.Rout.save | 36 tests/generators.from.designtest.Rout.save | 52 - tests/generators.summary.test.Rout.save | 36 tests/godolphintest.Rout.save | 36 tests/pbtest.Rout.save | 36 12 files changed, 975 insertions(+), 673 deletions(-)
Title: Domain Specific MetaData Scheme
Description: Forms the core for developing own domain specific metadata schemes.
It contains the basic functionality needed for all metadata schemes based on the
'dmdScheme'. See R.M. Krug and O.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.
Author: Rainer M. Krug [aut, cre] (<https://orcid.org/0000-0002-7490-0066>),
Owen L. Petchey [ctb] (<https://orcid.org/0000-0002-7724-1633>)
Maintainer: Rainer M. Krug <Rainer.Krug@uzh.ch>
Diff between dmdScheme versions 1.1.3 dated 2020-05-28 and 1.1.3.1 dated 2020-05-29
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ R/report.dmdScheme_validation.R | 3 ++- inst/doc/Howto_create_new_scheme.html | 10 +++++----- inst/doc/minimum_requirements_dmdscheme.html | 4 ++-- inst/doc/r_package_introduction.html | 14 +++++++------- man/report.Rd | 3 ++- vignettes/custom_template.R |only vignettes/custom_template.html |only 9 files changed, 30 insertions(+), 26 deletions(-)
Title: Sparse Covariance Matrix Estimation
Description: Direct sparse covariance matrix estimation via the covariance graphical lasso by Bien, Tibshirani (2011) <doi:10.1093/biomet/asr054> using the fast coordinate descent algorithm of Wang (2014) <doi:10.1007/s11222-013-9385-5>.
Author: Michael Fop [aut, cre] (<https://orcid.org/0000-0003-3936-2757>),
Hao Wang [ctb]
Maintainer: Michael Fop <michael.fop@ucd.ie>
Diff between covglasso versions 1.0.1 dated 2020-02-08 and 1.0.2 dated 2020-05-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ src/covglasso.cpp | 4 +++- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Estimate Time Varying Reproduction Numbers from Epidemic Curves
Description: Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
<doi:10.1093/aje/kwh255>.
Author: Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>),
Simon Cauchemez [ctb],
Neil M. Ferguson [ctb] (<https://orcid.org/0000-0002-1154-8093>),
Christophe Fraser [ctb] (<https://orcid.org/0000-0003-2399-9657>),
Elisabeth Dahlqwist [ctb] (<https://orcid.org/0000-0001-5797-6803>),
P. Alex Demarsh [ctb],
Thibaut Jombart [ctb] (<https://orcid.org/0000-0003-2226-8692>),
Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
Justin Lessler [ctb] (<https://orcid.org/0000-0002-9741-8109>),
Shikun Li [ctb],
Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>),
Jake Stockwin [ctb],
Robin Thompson [ctb] (<https://orcid.org/0000-0001-8545-5212>),
Rolina van Gaalen [ctb]
Maintainer: Anne Cori <a.cori@imperial.ac.uk>
Diff between EpiEstim versions 2.2-1 dated 2019-07-08 and 2.2-3 dated 2020-05-29
EpiEstim-2.2-1/EpiEstim/R/estimate_R.R |only EpiEstim-2.2-3/EpiEstim/DESCRIPTION | 9 - EpiEstim-2.2-3/EpiEstim/MD5 | 78 ++++----- EpiEstim-2.2-3/EpiEstim/NEWS.md | 17 +- EpiEstim-2.2-3/EpiEstim/R/data.R | 4 EpiEstim-2.2-3/EpiEstim/R/discr_si.R | 5 EpiEstim-2.2-3/EpiEstim/R/estimate_r.R |only EpiEstim-2.2-3/EpiEstim/R/plot.R | 6 EpiEstim-2.2-3/EpiEstim/R/wallinga_teunis.R | 4 EpiEstim-2.2-3/EpiEstim/README.md | 1 EpiEstim-2.2-3/EpiEstim/build/vignette.rds |binary EpiEstim-2.2-3/EpiEstim/data/Flu1918.rda |binary EpiEstim-2.2-3/EpiEstim/data/Measles1861.rda |binary EpiEstim-2.2-3/EpiEstim/data/MockRotavirus.rda |binary EpiEstim-2.2-3/EpiEstim/data/SARS2003.rda |binary EpiEstim-2.2-3/EpiEstim/data/Smallpox1972.rda |binary EpiEstim-2.2-3/EpiEstim/inst/doc/demo.R | 38 ++-- EpiEstim-2.2-3/EpiEstim/inst/doc/demo.html | 71 +++----- EpiEstim-2.2-3/EpiEstim/man/EstimateR.Rd | 29 ++- EpiEstim-2.2-3/EpiEstim/man/Flu2009.Rd | 18 ++ EpiEstim-2.2-3/EpiEstim/man/MockRotavirus.Rd | 2 EpiEstim-2.2-3/EpiEstim/man/WT.Rd | 15 + EpiEstim-2.2-3/EpiEstim/man/check_cdt_samples_convergence.Rd | 2 EpiEstim-2.2-3/EpiEstim/man/coarse2estim.Rd | 3 EpiEstim-2.2-3/EpiEstim/man/discr_si.Rd | 2 EpiEstim-2.2-3/EpiEstim/man/estimate_R.Rd | 14 + EpiEstim-2.2-3/EpiEstim/man/flu_2009_NYC_school.Rd | 2 EpiEstim-2.2-3/EpiEstim/man/init_mcmc_params.Rd | 11 - EpiEstim-2.2-3/EpiEstim/man/make_config.Rd | 22 +- EpiEstim-2.2-3/EpiEstim/man/make_mcmc_control.Rd | 12 - EpiEstim-2.2-3/EpiEstim/man/mers_2014_15.Rd | 2 EpiEstim-2.2-3/EpiEstim/man/plot.estimate_R.Rd | 33 ++- EpiEstim-2.2-3/EpiEstim/man/wallinga_teunis.Rd | 9 - EpiEstim-2.2-3/EpiEstim/tests/expected_output/Example1.rda |binary EpiEstim-2.2-3/EpiEstim/tests/expected_output/Example2.rda |binary EpiEstim-2.2-3/EpiEstim/tests/expected_output/Example3.rda |binary EpiEstim-2.2-3/EpiEstim/tests/expected_output/Example4.rda |binary EpiEstim-2.2-3/EpiEstim/tests/figs/flu2009-incidence-import.svg | 84 +++++----- EpiEstim-2.2-3/EpiEstim/tests/figs/flu2009-instantaneous-no-legend.svg | 44 ++--- EpiEstim-2.2-3/EpiEstim/tests/figs/flu2009-rc.svg | 4 EpiEstim-2.2-3/EpiEstim/tests/figs/flu2009-ri.svg | 4 41 files changed, 301 insertions(+), 244 deletions(-)
Title: A Collection of Useful Functions by John
Description: A set of general functions that I have used in various
projects and in other R packages. They support some miscellaneous operations
on data frames, matrices and vectors like adding a row on a ternary (3-value)
data.frame based on positive and negative vector-indicators, rearranging a
list of data.frames by rownames, pruning rows or columns of a data.frame
that contain only one specific value given by the user,
pruning and reordering a vector according to the common elements between its
names and elements of another given vector, finding the non-common elements
between two vectors (outer-section),
normalization of a vector, matrix or data.frame's numeric values in a specified range,
pretty printing of vector names and values in an R Markdown document.
Also included is a function that returns the statistics needed for plotting a ROC curve.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between usefun versions 0.4.5 dated 2020-04-22 and 0.4.6 dated 2020-05-29
usefun-0.4.5/usefun/man/plot_string_to_file.Rd |only usefun-0.4.6/usefun/DESCRIPTION | 6 ++-- usefun-0.4.6/usefun/MD5 | 23 ++++++++-------- usefun-0.4.6/usefun/NAMESPACE | 6 ---- usefun-0.4.6/usefun/NEWS.md | 5 +++ usefun-0.4.6/usefun/R/plot.R | 35 ------------------------- usefun-0.4.6/usefun/R/roc.R | 2 - usefun-0.4.6/usefun/R/save.R | 3 ++ usefun-0.4.6/usefun/README.md | 1 usefun-0.4.6/usefun/man/get_roc_stats.Rd | 2 - usefun-0.4.6/usefun/man/save_df_to_file.Rd | 2 + usefun-0.4.6/usefun/man/save_vector_to_file.Rd | 1 usefun-0.4.6/usefun/tests/testthat/test-plot.R |only usefun-0.4.6/usefun/tests/testthat/test-save.R |only 14 files changed, 29 insertions(+), 57 deletions(-)
Title: Analysis of Geostatistical Count Data using Gaussian Copulas
Description: Provides a variety of functions to analyze and model
geostatistical count data with Gaussian copulas, including
1) data simulation and visualization;
2) correlation structure assessment (here also known as the Normal To Anything);
3) calculate multivariate normal rectangle probabilities;
4) likelihood inference and parallel prediction at predictive locations.
Author: Zifei Han
Maintainer: Zifei Han <hanzifei1@gmail.com>
Diff between gcKrig versions 1.1.3 dated 2018-12-21 and 1.1.4 dated 2020-05-29
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/TwoMethods.R | 7 +++++-- build/partial.rdb |binary inst/NEWS.txt | 3 +++ 5 files changed, 15 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-31 0.8-4
2016-12-23 0.8-2
2016-09-06 0.8.1
2016-03-01 0.8
2015-10-12 0.7-1
2015-09-09 0.7
2015-04-19 0.6-2
2014-12-12 0.6-1
2014-03-11 0.6
2014-02-08 0.5-3
2013-12-03 0.5-2
2013-10-30 0.5-1
2013-09-24 0.5
2013-08-09 0.4
2013-07-16 0.3
2013-02-19 0.2
2013-01-21 0.1-2
2012-10-30 0.1-1
2012-10-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-08 0.3.1
2019-07-04 0.3.0
2018-12-10 0.2.1
2018-09-26 0.2.0
2018-04-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-02 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-22 0.9-1
2013-05-08 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-31 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-04 0.3-2
2018-05-10 0.3-1
2017-05-31 0.3-0
2016-06-20 0.2-0
2016-03-14 0.1-0
2015-02-16 0.0-8
2014-04-22 0.0-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-20 2.0-1
2012-11-29 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-25 2.0.0
2018-04-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-08 1.0.5
2018-06-04 1.0.4
2017-09-07 1.0.3
2014-01-03 1.0.2
2011-07-23 1.0.1
2011-03-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-18 2.1.0
2019-09-05 2.0.0
2019-05-23 1.3.0
2019-04-15 1.1.0
2019-04-15 1.1.1
2018-12-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-17 0.2.2
2019-12-16 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-08 0.3.2
Title: Inference, Aggregation and Visualization for Top-K Ranked Lists
Description: For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.
Author: Michael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin
Maintainer: Michael G. Schimek <michael.schimek@medunigraz.at>
Diff between TopKLists versions 1.0.6 dated 2015-11-13 and 1.0.7 dated 2020-05-29
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/TopKGraphics.R | 8 ++++---- build/vignette.rds |binary inst/doc/TopKLists.pdf |binary man/breast.Rd | 2 +- src/init.c |only 8 files changed, 18 insertions(+), 17 deletions(-)
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Description: Provides access to curated American Community Survey (ACS) base tables via a wrapper
to library(acs). Builds synthetic micro-datasets at any user-specified geographic level with
ten default attributes; and, conducts spatial microsimulation modeling (SMSM) via simulated
annealing. SMSM is conducted in parallel by default. Lastly, we provide functionality for
data-extensibility of micro-datasets.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between synthACS versions 1.5.7 dated 2020-04-25 and 1.6.0 dated 2020-05-29
synthACS-1.5.7/synthACS/tests/testthat/test-class_synthACS_methods.R |only synthACS-1.5.7/synthACS/tests/testthat/test-combine_smsm.R |only synthACS-1.5.7/synthACS/tests/testthat/test-sim_anneal_parallel.R |only synthACS-1.6.0/synthACS/DESCRIPTION | 11 synthACS-1.6.0/synthACS/MD5 | 25 synthACS-1.6.0/synthACS/R/pull_population.R | 4 synthACS-1.6.0/synthACS/inst/doc/jss_synthACS.pdf |binary synthACS-1.6.0/synthACS/inst/testdata |only synthACS-1.6.0/synthACS/tests/testthat.R | 14 synthACS-1.6.0/synthACS/tests/testthat/local-class_synthACS_methods.R |only synthACS-1.6.0/synthACS/tests/testthat/local-combine_smsm.R |only synthACS-1.6.0/synthACS/tests/testthat/local-derive_synthetic.R |only synthACS-1.6.0/synthACS/tests/testthat/local-sim_anneal.R |only synthACS-1.6.0/synthACS/tests/testthat/local-sim_anneal_parallel.R |only synthACS-1.6.0/synthACS/tests/testthat/local-synth_new_attr.R |only synthACS-1.6.0/synthACS/tests/testthat/setup-testdata.R |only synthACS-1.6.0/synthACS/tests/testthat/test-derive_synthetic.R | 30 synthACS-1.6.0/synthACS/tests/testthat/test-sim_anneal.R | 402 ---------- synthACS-1.6.0/synthACS/tests/testthat/test-synth_new_attr.R | 138 --- 19 files changed, 31 insertions(+), 593 deletions(-)
Title: Convert Strings to Elder Futhark Runes
Description: Convert a string of text characters to Elder Futhark Runes <https://en.wikipedia.org/wiki/Elder_Futhark>.
Author: Bryan Jenks [aut, cre] (<https://orcid.org/0000-0002-9604-3069>)
Maintainer: Bryan Jenks <bryanjenks@protonmail.com>
Diff between runes versions 0.0.1 dated 2020-02-22 and 0.1.0 dated 2020-05-29
DESCRIPTION | 6 MD5 | 17 + NEWS.md | 42 ++++ R/runes.R | 195 ++++++++++++++++++---- R/runes_table.R | 327 +++++++++++++++++++++++++++++++++++--- inst |only man/runes.Rd | 20 +- man/runes_table.Rd | 9 - tests/testthat/test-runes.R | 75 +------- tests/testthat/test-runes_table.R | 7 10 files changed, 558 insertions(+), 140 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package
and then attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between pkgload versions 1.0.2 dated 2018-10-29 and 1.1.0 dated 2020-05-29
DESCRIPTION | 16 +- MD5 | 61 +++++----- NEWS.md | 15 ++ R/dev-example.r | 44 +++++-- R/dev-help.r | 15 ++ R/dev-topic.r | 3 R/load-dll.r | 12 +- R/load.r | 90 ++++++++++++++-- R/namespace-env.r | 34 ++++-- R/package-deps.r | 5 R/shims.r | 2 R/utils.R | 7 - README.md | 7 - man/check_suggested.Rd | 5 man/dev_example.Rd | 26 +++- man/dev_help.Rd | 12 +- man/help.Rd | 8 - man/imports_env.Rd | 2 man/load_all.Rd | 32 ++++- man/ns_env.Rd | 4 man/parse_deps.Rd | 4 man/pkg_env.Rd | 2 man/system.file.Rd | 2 tests/testthat/test-examples.R | 26 ++++ tests/testthat/test-extraction.R | 2 tests/testthat/test-help.r | 1 tests/testthat/test-load.r | 14 ++ tests/testthat/testHelp/NAMESPACE | 2 tests/testthat/testHelp/R/foofoo.r | 14 ++ tests/testthat/testHelp/man/macros |only tests/testthat/testHelp/man/testCustomMacro.Rd |only tests/testthat/testHelp/man/testSysMacro.Rd |only tests/testthat/testLoadHelpers/tests/testthat/helpers.R | 2 33 files changed, 349 insertions(+), 120 deletions(-)
Title: Estimation and Projection of Age-Specific Mortality Rates
Description: Age-specific mortality rates are estimated and projected using
the Kannisto, Lee-Carter and related methods as described in
Sevcikova et al. (2016) <doi:10.1007/978-3-319-26603-9_15>.
Author: Hana Sevcikova, Nan Li and Patrick Gerland
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between MortCast versions 2.2-1 dated 2020-05-05 and 2.3-0 dated 2020-05-29
ChangeLog | 6 ++- DESCRIPTION | 10 ++--- MD5 | 29 ++++++++------- R/MortCast-data.R | 12 ++++-- R/other_methods.R | 97 ++++++++++++++++++++++++++++++++++----------------- build/partial.rdb |binary data/LQcoef.rda |binary data/MLT1Ylookup.rda |only data/MLTlookup.rda |binary data/PMDadjcoef.rda |binary data/PMDrho.rda |binary data/datalist |only man/MLTlookup.Rd | 11 +++-- man/mltgroup.Rd | 21 ++++++++--- man/pmdgroup.Rd | 5 ++ src/Makevars |only src/life_tables.c | 34 +++++++++-------- 17 files changed, 146 insertions(+), 79 deletions(-)