Title: Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that,
in a (non)linear mixed effects model, the variances of a subset of the random
effects are equal to zero. There is no restriction on the subset of variances
that can be tested: for example, it is possible to test that all the variances
are equal to zero. Note that the implemented test is asymptotic.
This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'.
Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] (<https://orcid.org/0000-0002-1413-1058>),
Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Diff between varTestnlme versions 0.1.0 dated 2020-01-10 and 0.2.0 dated 2020-07-07
DESCRIPTION | 10 +- MD5 | 40 ++++++----- NAMESPACE | 1 NEWS.md | 4 + R/bootstrapFIM.R |only R/chiBarObject.R | 4 - R/extractFIMnlme.R | 1 R/funcStruct.R | 48 ++++++++++--- R/getVarCovlme4.R |only R/getVarCovnlme.R |only R/varTest.R | 160 +++++++++++++++++++++++++--------------------- README.md | 47 ++++++++----- build/vignette.rds |binary inst/doc/varTestnlme.R | 86 ++++++++++++++++++++++-- inst/doc/varTestnlme.Rmd | 111 +++++++++++++++++++++++++++---- inst/doc/varTestnlme.html | 115 +++++++++++++++++++++++++++------ man/bootinvFIM.Rd |only man/dfchisqbar-methods.Rd | 4 - man/funcStruct.Rd |only man/getVarCovlme4.Rd |only man/getVarCovnlme.Rd |only man/pchisqbar-methods.Rd | 4 - man/varTest.Rd | 22 +++--- vignettes/varTestnlme.Rmd | 111 +++++++++++++++++++++++++++---- vignettes/web_only |only 25 files changed, 572 insertions(+), 196 deletions(-)
Title: Tools for Visualizing Gaussian Mixture Models
Description: The main function, plot_GMM, is used for plotting output from Gaussian mixture models (GMMs),
including both densities and overlaying mixture weight component curves from the fit GMM. The package
also include the function, plot_cut_point, which plots the cutpoint (mu) from the GMM over a histogram
of the distribution with several color options. Finally, the package includes the function, plot_mix_comps,
which is used in the plot_GMM function, and can be used to create a custom plot for overlaying mixture
component curves from GMMs. For the plot_mix_comps function, usage most often will be specifying
the "fun" argument within "stat_function" in a ggplot2 object.
Author: Philip Waggoner [aut, cre],
Fong Chan [aut]
Maintainer: Philip Waggoner <philip.waggoner@gmail.com>
Diff between plotGMM versions 0.2.1 dated 2019-06-28 and 0.2.2 dated 2020-07-07
DESCRIPTION | 11 +++++------ MD5 | 5 +++-- NEWS | 15 +++++---------- R/zzz.R |only 4 files changed, 13 insertions(+), 18 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides
a high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<arXiv:1902.08318> paper for more details about 'simdjson'. This package is
at present still a fairly thin and not fully complete wrapper that does not
aim to replace the existing and excellent 'JSON' packages for R.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.0.6 dated 2020-06-25 and 0.1.0 dated 2020-07-07
RcppSimdJson-0.0.6/RcppSimdJson/man/dot-deserialize_json.Rd |only RcppSimdJson-0.1.0/RcppSimdJson/ChangeLog | 49 RcppSimdJson-0.1.0/RcppSimdJson/DESCRIPTION | 13 RcppSimdJson-0.1.0/RcppSimdJson/MD5 | 46 RcppSimdJson-0.1.0/RcppSimdJson/NAMESPACE | 1 RcppSimdJson-0.1.0/RcppSimdJson/R/RcppExports.R | 77 - RcppSimdJson-0.1.0/RcppSimdJson/R/fload.R |only RcppSimdJson-0.1.0/RcppSimdJson/R/fparse.R |only RcppSimdJson-0.1.0/RcppSimdJson/R/utils.R |only RcppSimdJson-0.1.0/RcppSimdJson/build/partial.rdb |binary RcppSimdJson-0.1.0/RcppSimdJson/inst/NEWS.Rd | 16 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson.hpp | 2 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/common.hpp | 138 +- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize.hpp | 515 ++++---- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/Type_Doctor.hpp | 600 +++++----- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/dataframe.hpp | 353 ++--- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/matrix.hpp | 438 ++++--- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/scalar.hpp | 186 +-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/simplify.hpp | 271 ++-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/vector.hpp | 230 +-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/utils.hpp | 124 -- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/simdjson.cpp | 53 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/simdjson.h | 142 +- RcppSimdJson-0.1.0/RcppSimdJson/inst/tinytest/test_fparse_fload.R |only RcppSimdJson-0.1.0/RcppSimdJson/man/fparse.Rd |only RcppSimdJson-0.1.0/RcppSimdJson/src/RcppExports.cpp | 22 RcppSimdJson-0.1.0/RcppSimdJson/src/deserialize.cpp | 506 ++++---- 27 files changed, 2017 insertions(+), 1765 deletions(-)
Title: Tools for Cleaning Up Messy Files
Description: Some tools for cleaning up messy 'Excel' files to
be suitable for R. People who have been working with 'Excel' for years
built more or less complicated sheets with names, characters, formats
that are not homogeneous. To be able to use them in R nowadays, we
built a set of functions that will avoid the majority of importation
problems and keep all the data at best.
Author: Vincent Guyader [aut, cre] (<https://orcid.org/0000-0003-0671-9270>),
Sébastien Rochette [aut] (<https://orcid.org/0000-0002-1565-9313>),
ThinkR [cph]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between thinkr versions 0.13 dated 2018-06-21 and 0.15 dated 2020-07-07
thinkr-0.13/thinkr/man/thinkr.Rd |only thinkr-0.15/thinkr/DESCRIPTION | 47 +++- thinkr-0.15/thinkr/MD5 | 73 +++---- thinkr-0.15/thinkr/NAMESPACE | 101 +++++----- thinkr-0.15/thinkr/R/all_ggplot_to_docx.R | 152 +++++++-------- thinkr-0.15/thinkr/R/clean_names.R | 229 +++++++++++------------ thinkr-0.15/thinkr/R/excel_names.R | 87 ++++----- thinkr-0.15/thinkr/R/thinkr.r | 18 - thinkr-0.15/thinkr/R/utils-pipe.R | 2 thinkr-0.15/thinkr/R/write_csv.R | 65 +++--- thinkr-0.15/thinkr/README.md | 239 +++++++++++++++++++++---- thinkr-0.15/thinkr/inst |only thinkr-0.15/thinkr/man/all_ggplot_to_pptx.Rd | 62 +++--- thinkr-0.15/thinkr/man/as_mon_numeric.Rd | 34 +-- thinkr-0.15/thinkr/man/clean_levels.Rd | 42 ++-- thinkr-0.15/thinkr/man/clean_names.Rd | 54 ++--- thinkr-0.15/thinkr/man/clean_vec.Rd | 58 +++--- thinkr-0.15/thinkr/man/dot-efface_test.Rd |only thinkr-0.15/thinkr/man/dput_levels.Rd | 42 ++-- thinkr-0.15/thinkr/man/excel_col.Rd | 32 +-- thinkr-0.15/thinkr/man/excel_to_ncol.Rd | 34 +-- thinkr-0.15/thinkr/man/figures |only thinkr-0.15/thinkr/man/find_name.Rd | 46 ++-- thinkr-0.15/thinkr/man/from_excel_to_posixt.Rd | 32 +-- thinkr-0.15/thinkr/man/grapes-ni-grapes.Rd | 42 ++-- thinkr-0.15/thinkr/man/gsub2.Rd | 40 ++-- thinkr-0.15/thinkr/man/is.01.Rd | 48 ++--- thinkr-0.15/thinkr/man/is.12.Rd | 48 ++--- thinkr-0.15/thinkr/man/is_full_figures.Rd | 44 ++-- thinkr-0.15/thinkr/man/is_full_na.Rd | 40 ++-- thinkr-0.15/thinkr/man/is_likert.Rd | 50 ++--- thinkr-0.15/thinkr/man/look_like_a_number.Rd | 34 +-- thinkr-0.15/thinkr/man/make_unique.Rd | 50 ++--- thinkr-0.15/thinkr/man/ncol_to_excel.Rd | 34 +-- thinkr-0.15/thinkr/man/peep.Rd | 72 +++---- thinkr-0.15/thinkr/man/pipe.Rd | 24 +- thinkr-0.15/thinkr/man/replace_pattern.Rd | 72 +++---- thinkr-0.15/thinkr/man/save_as_csv.Rd | 66 +++--- thinkr-0.15/thinkr/man/set_col_type.Rd | 40 ++-- thinkr-0.15/thinkr/man/thinkr-package.Rd |only 40 files changed, 1172 insertions(+), 981 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-11 dated 2017-08-08 and 0.2-12 dated 2020-07-07
DESCRIPTION | 11 ++++++----- MD5 | 8 +++++--- R/skmeans.R | 7 ++++++- build/partial.rdb |binary inst/po |only po |only 6 files changed, 17 insertions(+), 9 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.0.7 dated 2020-04-18 and 1.1.0 dated 2020-07-07
pkgcache-1.0.7/pkgcache/tests/testthat/helper-async.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-async-http.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-cache.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-cran-metadata.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-metadata-api.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-metadata-cache.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test.R |only pkgcache-1.1.0/pkgcache/DESCRIPTION | 12 - pkgcache-1.1.0/pkgcache/MD5 | 70 ++++---- pkgcache-1.1.0/pkgcache/NAMESPACE | 9 + pkgcache-1.1.0/pkgcache/NEWS.md | 16 + pkgcache-1.1.0/pkgcache/R/aaa-async.R | 21 +- pkgcache-1.1.0/pkgcache/R/async-http.R | 1 pkgcache-1.1.0/pkgcache/R/metadata-cache.R | 77 ++++++-- pkgcache-1.1.0/pkgcache/R/packages-gz.R | 9 - pkgcache-1.1.0/pkgcache/R/platform.R |only pkgcache-1.1.0/pkgcache/R/repo-status.R |only pkgcache-1.1.0/pkgcache/R/utils.R | 70 ++++---- pkgcache-1.1.0/pkgcache/man/bioc_version.Rd |only pkgcache-1.1.0/pkgcache/man/cranlike_metadata_cache.Rd | 2 pkgcache-1.1.0/pkgcache/man/current_r_platform.Rd |only pkgcache-1.1.0/pkgcache/man/default_cran_mirror.Rd |only pkgcache-1.1.0/pkgcache/man/pkgcache-package.Rd | 87 ++++------ pkgcache-1.1.0/pkgcache/man/repo_status.Rd |only pkgcache-1.1.0/pkgcache/tests/async/helper.R | 22 -- pkgcache-1.1.0/pkgcache/tests/async/setup-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/async/teardown-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/async/test-call-function.R | 6 pkgcache-1.1.0/pkgcache/tests/async/test-cancel-early.R | 16 - pkgcache-1.1.0/pkgcache/tests/async/test-deferred-http.R | 15 - pkgcache-1.1.0/pkgcache/tests/async/test-deferred-then.R | 24 -- pkgcache-1.1.0/pkgcache/tests/async/test-http.R | 74 +++----- pkgcache-1.1.0/pkgcache/tests/async/test-parallel.R | 6 pkgcache-1.1.0/pkgcache/tests/async/test-process.R | 7 pkgcache-1.1.0/pkgcache/tests/async/test-when-any.R | 5 pkgcache-1.1.0/pkgcache/tests/test-async.R | 4 pkgcache-1.1.0/pkgcache/tests/testthat.R | 4 pkgcache-1.1.0/pkgcache/tests/testthat/setup-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/testthat/teardown-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-1.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-2.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-3.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-2-metadata-api.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-3-cran-metadata.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-4-async-http.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-5-cache.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-metadata-utils.R | 2 pkgcache-1.1.0/pkgcache/tests/testthat/test-utils.R | 32 +-- 48 files changed, 310 insertions(+), 281 deletions(-)
Title: Model Wrappers for Discriminant Analysis
Description: Bindings for additional classification models for use with the
'parsnip' package. Models include flavors of discriminant analysis, such as
linear (Fisher (1936) <doi:10.1111/j.1469-1809.1936.tb02137.x>), regularized
(Friedman (1989) <doi:10.1080/01621459.1989.10478752>), and flexible
(Hastie, Tibshirani, and Buja (1994) <doi:10.1080/01621459.1994.10476866>),
as well as naive Bayes classifiers (Hand and Yu (2007)
<doi:10.1111/j.1751-5823.2001.tb00465.x>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between discrim versions 0.0.2 dated 2020-04-09 and 0.1.0 dated 2020-07-07
DESCRIPTION | 22 ++++++++----- MD5 | 39 ++++++++++++------------ NEWS.md | 4 ++ R/discrim_flexible_data.R | 11 ++++++ R/discrim_lin_data.R | 22 +++++++++++++ R/discrim_regularized_data.R | 11 ++++++ R/naive_Bayes.R | 2 - R/naive_Bayes_data.R | 21 +++++++++++++ inst/WORDLIST | 9 +++++ man/discrim_flexible.Rd | 10 +++--- man/discrim_linear.Rd | 6 ++- man/discrim_regularized.Rd | 8 +++-- man/figures/README-example-1.png |binary man/naive_Bayes.Rd | 35 +++++++++++++-------- man/rmd/discrim-flexible-engine.Rmd | 17 +++++++++- man/rmd/discrim-lin-engine.Rmd | 15 ++++++++- man/rmd/discrim-regularized-engine.Rmd | 16 ++++++++-- man/rmd/naive-Bayes-engine.Rmd | 20 ++++++++++-- man/rmd/setup.Rmd |only tests/testthat/test-naive-Bayes.R | 43 +++++++++++---------------- tests/testthat/test-naive-Bayes_naivebayes.R | 41 ++++++++++--------------- 21 files changed, 244 insertions(+), 108 deletions(-)
Title: Client for the CORE API
Description: Client for the CORE API (<https://core.ac.uk/docs/>).
CORE (<https://core.ac.uk>) aggregates open access research
outputs from repositories and journals worldwide and make them
available to the public.
Author: Scott Chamberlain [aut, cre],
Aristotelis Charalampous [ctb],
Simon Goring [ctb]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between rcoreoa versions 0.3.0 dated 2018-09-20 and 0.4.0 dated 2020-07-07
rcoreoa-0.3.0/rcoreoa/R/advanced_search_helper_functions.R |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.R |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.Rmd |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.html |only rcoreoa-0.3.0/rcoreoa/tests/testthat/test-fail-well.R |only rcoreoa-0.3.0/rcoreoa/vignettes/cored_vignette.Rmd |only rcoreoa-0.4.0/rcoreoa/DESCRIPTION | 20 - rcoreoa-0.4.0/rcoreoa/LICENSE | 2 rcoreoa-0.4.0/rcoreoa/MD5 | 73 ++-- rcoreoa-0.4.0/rcoreoa/NAMESPACE | 4 rcoreoa-0.4.0/rcoreoa/NEWS.md | 13 rcoreoa-0.4.0/rcoreoa/R/core_advanced_search.R | 148 +++++---- rcoreoa-0.4.0/rcoreoa/R/core_articles.R | 6 rcoreoa-0.4.0/rcoreoa/R/core_articles_dedup.R |only rcoreoa-0.4.0/rcoreoa/R/core_articles_history.R | 5 rcoreoa-0.4.0/rcoreoa/R/core_articles_search.R | 4 rcoreoa-0.4.0/rcoreoa/R/core_journals.R | 5 rcoreoa-0.4.0/rcoreoa/R/core_repos_search.R | 4 rcoreoa-0.4.0/rcoreoa/R/core_search.R | 23 - rcoreoa-0.4.0/rcoreoa/R/rcoreoa-package.R | 13 rcoreoa-0.4.0/rcoreoa/R/zzz.R | 41 ++ rcoreoa-0.4.0/rcoreoa/README.md | 155 +--------- rcoreoa-0.4.0/rcoreoa/build/vignette.rds |binary rcoreoa-0.4.0/rcoreoa/inst/doc/rcoreoa.Rmd |only rcoreoa-0.4.0/rcoreoa/inst/doc/rcoreoa.html |only rcoreoa-0.4.0/rcoreoa/man/core_advanced_search.Rd | 109 ++++--- rcoreoa-0.4.0/rcoreoa/man/core_articles.Rd | 37 +- rcoreoa-0.4.0/rcoreoa/man/core_articles_dedup.Rd |only rcoreoa-0.4.0/rcoreoa/man/core_articles_history.Rd | 7 rcoreoa-0.4.0/rcoreoa/man/core_articles_pdf.Rd | 2 rcoreoa-0.4.0/rcoreoa/man/core_articles_search.Rd | 43 ++ rcoreoa-0.4.0/rcoreoa/man/core_repos_search.Rd | 7 rcoreoa-0.4.0/rcoreoa/man/core_search.Rd | 19 - rcoreoa-0.4.0/rcoreoa/man/rcoreoa-package.Rd | 14 rcoreoa-0.4.0/rcoreoa/tests/fixtures |only rcoreoa-0.4.0/rcoreoa/tests/testthat/helper-rcoreoa.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_advanced_search.R | 89 +---- rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_articles.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_articles_history.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_search.R | 45 ++ rcoreoa-0.4.0/rcoreoa/vignettes/rcoreoa.Rmd |only rcoreoa-0.4.0/rcoreoa/vignettes/rcoreoa.Rmd.og |only 42 files changed, 455 insertions(+), 433 deletions(-)
Title: 'Petfinder' API Wrapper
Description: Wrapper of the 'Petfinder API' <https://www.petfinder.com/developers/v2/docs/> that implements
methods for interacting with and extracting data from the 'Petfinder' database. The 'Petfinder
REST API' allows access to the 'Petfinder' database, one of the largest online databases of
adoptable animals and animal welfare organizations across North America.
Author: Aaron Schlegel
Maintainer: Aaron Schlegel <aaron@aaronschlegel.me>
Diff between PetfindeR versions 2.0.0 dated 2019-08-23 and 2.1.0 dated 2020-07-07
PetfindeR-2.0.0/PetfindeR/build/PetfindeR_2.0.0.tar.gz |only PetfindeR-2.1.0/PetfindeR/DESCRIPTION | 12 - PetfindeR-2.1.0/PetfindeR/MD5 | 22 - PetfindeR-2.1.0/PetfindeR/R/api.R | 75 +++++- PetfindeR-2.1.0/PetfindeR/README.md | 23 - PetfindeR-2.1.0/PetfindeR/build/vignette.rds |binary PetfindeR-2.1.0/PetfindeR/inst/doc/Introduction_to_PetfindeR.R | 36 +-- PetfindeR-2.1.0/PetfindeR/inst/doc/Introduction_to_PetfindeR.html | 115 +++++---- PetfindeR-2.1.0/PetfindeR/man/animals.Rd | 24 +- PetfindeR-2.1.0/PetfindeR/man/dot-Petfinder.class.Rd | 117 +++++++++- PetfindeR-2.1.0/PetfindeR/man/organizations.Rd | 16 + PetfindeR-2.1.0/PetfindeR/tests/testthat/test-animals.R | 11 PetfindeR-2.1.0/PetfindeR/vignettes/Introduction_to_PetfindeR.md |only 13 files changed, 333 insertions(+), 118 deletions(-)
Title: Formal Concept Analysis
Description: Provides tools to perform fuzzy formal concept analysis, presented in Wille (1982) <doi:10.1007/978-3-642-01815-2_23> and in Ganter and Obiedkov (2016) <doi:10.1007/978-3-662-49291-8>.
It provides functions to load and save a formal context, extract its concept lattice and implications.
In addition, one can use the implications to compute semantic closures of fuzzy sets and, thus, build recommendation systems.
Author: Domingo Lopez Rodriguez [aut, cre]
(<https://orcid.org/0000-0002-0172-1585>),
Angel Mora [aut],
Jesus Dominguez [aut],
Ana Villalon [aut],
Ian Johnson [ctb]
Maintainer: Domingo Lopez Rodriguez <dominlopez@uma.es>
Diff between fcaR versions 1.0.3 dated 2020-01-19 and 1.0.4 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 77 +++++---- NAMESPACE | 29 ++- NEWS.md | 13 + R/RcppExports.R | 4 R/as_SparseSet.R |only R/batch_apply.R | 3 R/compute_closure.R | 32 +++ R/concept_lattice.R | 274 ++++++++++++++++++++++++++++++++-- R/export_to_latex.R | 22 +- R/export_to_string.R | 3 R/formal_context.R | 221 ++++++++++++++++++++++++--- R/imp_to_basis.R |only R/implication_set.R | 44 ++++- R/process_batch.R | 3 R/sparse_concept.R | 18 +- R/sparse_set.R | 77 ++++++++- R/to_fraction.R |only README.md | 11 - inst/doc/arules.html | 34 ++-- inst/doc/concept_lattice.html | 52 +++--- inst/doc/implications.html | 50 +++--- man/ConceptLattice.Rd | 55 ++++++ man/FormalContext.Rd | 55 ++++++ man/ImplicationSet.Rd | 32 +++ man/SparseConcept.Rd | 15 + man/SparseSet.Rd | 44 +++++ man/as_SparseSet.Rd |only man/as_vector.Rd |only man/cobre32.Rd | 6 man/cobre61.Rd | 6 man/planets.Rd | 6 man/vegas.Rd | 6 src/RcppExports.cpp | 9 - src/nextclosure.cpp | 96 +++++++---- src/vector_operations.cpp | 34 ++++ src/vector_operations.h | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-concept_lattice.R | 11 + tests/testthat/test-formal_context.R | 2 tests/testthat/test-implication_set.R | 12 + tests/testthat/test-sparse_set.R | 9 + 42 files changed, 1143 insertions(+), 233 deletions(-)
Title: Rearrangement Distances Between Unrooted Phylogenetic Trees
Description: Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Matsen (2017) <arxiv:1511.07529>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TBRDist versions 1.0.0 dated 2020-07-01 and 1.0.1 dated 2020-07-07
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/RcppExports.R | 30 +++++++++++++++--------------- R/uspr.R | 24 ++++++++++++++---------- inst/doc/TBRDist.html | 4 ++-- man/TreeRearrangementDistances.Rd | 10 +++++----- man/dot-PrepareTrees.Rd | 1 + src/RcppExports.cpp | 30 +++++++++++++++--------------- src/uspr.cpp | 33 ++++++++++++++++----------------- src/uspr/tbr.h | 1 - 12 files changed, 90 insertions(+), 82 deletions(-)
Title: Strategy Estimation
Description: Variants of strategy estimation (Dal Bo & Frechette, 2011, <doi:10.1257/aer.101.1.411>), including the model with parameters for the choice probabilities of the strategies (Breitmoser, 2015, <doi:10.1257/aer.20130675>), and the model with individual level covariates for the selection of strategies by individuals (Dvorak & Fehrler, 2018, <doi:10.2139/ssrn.2986445>).
Author: Fabian Dvorak
Maintainer: Fabian Dvorak <fabian.dvorak@uni.kn>
Diff between stratEst versions 1.0.0 dated 2020-06-23 and 1.0.1 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 34 +-- R/stratEst_check.R | 1 R/stratEst_check_data.R | 6 R/stratEst_model.R | 9 R/stratEst_post.R | 46 ++++ R/stratEst_simulate.R | 2 R/stratEst_simulate_check_strategies.R | 2 R/stratEst_strategy.R | 2 R/stratEst_test.R | 19 -- R/summary_stratEst_model.R | 304 ++++++++++++++++++++------------- man/stratEst.model.Rd | 31 +-- man/stratEst.test.Rd | 3 src/Makevars.win | 2 src/stratEst.cpp | 213 ++++++++++------------- src/stratEst_data.cpp | 3 tests/testthat/tests.examples.R | 22 +- tests/testthat/tests.stratEst.R | 245 +++++++++++--------------- 18 files changed, 504 insertions(+), 450 deletions(-)
Title: Bayesian Inference for A|B and Bandit Marketing Tests
Description: Uses simple Bayesian conjugate prior update rules to calculate
the win probability of each option, value remaining in the test, and
percent lift over the baseline for various marketing objectives.
References:
Fink, Daniel (1997) "A Compendium of Conjugate Priors" <https://www.johndcook.com/CompendiumOfConjugatePriors.pdf>.
Stucchio, Chris (2015) "Bayesian A/B Testing at VWO" <http://cdn2.hubspot.net/hubfs/310840/VWO_SmartStats_technical_whitepaper.pdf>.
Author: Ryan Angi
Maintainer: Ryan Angi <rangi@redventures.com>
Diff between grizbayr versions 1.2.2 dated 2020-06-04 and 1.2.3 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 7 +++++++ R/estimate_win_prob_given_posterior.R | 2 +- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Description: Does family-based gene by environment interaction tests, joint gene, gene-environment interaction test, and a test of a set of genes conditional on another set of genes.
Author: Thomas Hoffmann <tjhoffm@gmail.com>
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>
Diff between fbati versions 1.0-3 dated 2018-04-23 and 1.0-4 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/REXP_joint.R | 3 ++- R/fbatmeev.R | 6 ++++-- src/fbati_init.c | 25 +++++++++++++++++++------ src/fbatmeev.cpp | 7 +++++++ 6 files changed, 41 insertions(+), 18 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.4.3 dated 2020-02-20 and 1.5.1 dated 2020-07-07
DESCRIPTION | 10 ++--- MD5 | 50 +++++++++++++------------- R/MarginalFit-methods.R | 76 +++++++++++++++++++++++++++++++--------- R/generalizedLoewe.R | 11 ++++- inst/NEWS | 3 + inst/doc/analysis.html | 12 +++--- inst/doc/methodology.html | 4 +- man/CPBootstrap.Rd | 10 ++++- man/bootstrapData.Rd | 9 +++- man/constructFormula.Rd | 8 +++- man/directAntivirals.Rd | 6 ++- man/directAntivirals_ALL.Rd | 6 ++- man/fitMarginals.Rd | 13 +++++- man/fitSurface.Rd | 27 ++++++++++---- man/generateData.Rd | 14 +++++-- man/getTransformations.Rd | 3 - man/maxR.Rd | 20 ++++++++-- man/meanR.Rd | 19 +++++++--- man/plot.MarginalFit.Rd | 9 ++++ man/plot.ResponseSurface.Rd | 3 - man/plot.maxR.Rd | 18 ++++++--- man/plotResponseSurface.Rd | 27 ++++++++++---- man/predictOffAxis.Rd | 9 +++- man/simulateNull.Rd | 9 +++- tests/testthat/test_calls.R | 21 +++++------ tests/testthat/test_marginals.R | 12 +++++- 26 files changed, 288 insertions(+), 121 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-24 0.1.1
2017-05-12 0.0.1
Title: Interface to Data from the SAFE Project
Description: The SAFE Project (<https://www.safeproject.net/>) is a large
scale ecological experiment in Malaysian Borneo that explores the impact
of habitat fragmentation and conversion on ecosystem function and services.
Data collected at the SAFE Project is made available under a common format
through the Zenodo data repository and this package makes it easy to
discover and load that data into R.
Author: Andy Aldersley [aut],
David Orme [aut, cre] (<https://orcid.org/0000-0002-7005-1394>)
Maintainer: David Orme <d.orme@imperial.ac.uk>
Diff between safedata versions 1.0.1 dated 2020-06-02 and 1.0.5 dated 2020-07-07
safedata-1.0.1/safedata/man/get_phylogeny.Rd |only safedata-1.0.1/safedata/man/load_safe_worksheet.Rd |only safedata-1.0.5/safedata/DESCRIPTION | 10 safedata-1.0.5/safedata/MD5 | 43 safedata-1.0.5/safedata/NAMESPACE | 4 safedata-1.0.5/safedata/R/files.R |only safedata-1.0.5/safedata/R/index.R | 82 safedata-1.0.5/safedata/R/load_safe.R | 228 + safedata-1.0.5/safedata/R/locations.R | 14 safedata-1.0.5/safedata/R/metadata.R | 85 safedata-1.0.5/safedata/R/safedata.R | 12 safedata-1.0.5/safedata/R/taxa.R | 350 ++ safedata-1.0.5/safedata/inst/doc/overview.html | 498 +--- safedata-1.0.5/safedata/inst/doc/using_safe_data.R | 18 safedata-1.0.5/safedata/inst/doc/using_safe_data.Rmd | 52 safedata-1.0.5/safedata/inst/doc/using_safe_data.html | 1197 +++++----- safedata-1.0.5/safedata/inst/safedata_example_dir/template_ClareWfunctiondata.xlsx |only safedata-1.0.5/safedata/man/file_status.Rd |only safedata-1.0.5/safedata/man/get_file_details.Rd |only safedata-1.0.5/safedata/man/get_taxon_coverage.Rd | 2 safedata-1.0.5/safedata/man/get_taxon_graph.Rd |only safedata-1.0.5/safedata/man/igraph_to_phylo.Rd |only safedata-1.0.5/safedata/man/insert_dataset.Rd |only safedata-1.0.5/safedata/man/load_index.Rd | 5 safedata-1.0.5/safedata/man/set_safe_dir.Rd | 3 safedata-1.0.5/safedata/man/show_concepts.Rd | 4 safedata-1.0.5/safedata/vignettes/using_safe_data.Rmd | 52 27 files changed, 1540 insertions(+), 1119 deletions(-)
Title: Data Language Engine for 'knitr' / 'rmarkdown'
Description: Implements a data language engine for incorporating data directly in
'rmarkdown' documents so that they can be made completely standalone.
Author: David M. Kaplan [aut, cre, cph]
(<https://orcid.org/0000-0001-6087-359X>, dmkaplan2000)
Maintainer: David M. Kaplan <dmkaplan2000@gmail.com>
Diff between knitrdata versions 0.3.1 dated 2020-06-23 and 0.4.1 dated 2020-07-07
DESCRIPTION | 9 MD5 | 29 - NAMESPACE | 3 NEWS.md | 12 R/create_chunks.R | 12 R/data_engine.R | 4 R/rstudio_addins.R |only README.md | 9 build/vignette.rds |binary inst/doc/data_language_engine_vignette.Rmd | 20 inst/doc/data_language_engine_vignette.html | 710 ++++++++++++++-------------- inst/rstudio |only man/create_chunk.Rd | 11 man/create_data_chunk_dialog.Rd |only man/insert_data_chunk_dialog.Rd |only man/list_rmd_chunks.Rd | 9 man/remove_chunks_dialog.Rd |only vignettes/data_language_engine_vignette.Rmd | 20 18 files changed, 482 insertions(+), 366 deletions(-)
Title: Diversity Through Hill Numbers
Description: Calculate taxonomic, functional and phylogenetic diversity measures
through Hill Numbers proposed by Chao, Chiu and Jost (2014)
<doi:10.1146/annurev-ecolsys-120213-091540>.
Author: Daijiang Li
Maintainer: Daijiang Li <daijianglee@gmail.com>
Diff between hillR versions 0.4.0 dated 2018-11-19 and 0.5.0 dated 2020-07-07
DESCRIPTION | 14 ++-- MD5 | 50 ++++++++-------- NEWS.md | 7 ++ R/hill_func.R | 47 ++++++++------- R/hill_func_parti.R | 28 ++++----- R/hill_func_parti_pairwise.R | 57 +++++++++++++------ R/hill_phylo.R | 69 +++++++++-------------- R/hill_phylo_parti.R | 75 ++++++++++++++----------- R/hill_phylo_parti_pairwise.R | 70 +++++++++++++++++------ R/hill_taxa.R | 2 R/hill_taxa_parti.R | 25 +++++--- R/hill_taxa_parti_pairwise.R | 47 ++++++++++----- README.md | 116 +++++++++++++++++++++------------------ man/hillR.Rd | 1 man/hill_func.Rd | 21 +++++-- man/hill_func_parti.Rd | 26 +++++--- man/hill_func_parti_pairwise.Rd | 21 +++++-- man/hill_phylo.Rd | 18 ++++-- man/hill_phylo_parti.Rd | 26 ++++++-- man/hill_phylo_parti_pairwise.Rd | 31 ++++++++-- man/hill_taxa.Rd | 2 man/hill_taxa_parti.Rd | 22 +++++-- man/hill_taxa_parti_pairwise.Rd | 18 +++++- tests/testthat/test_hill_func.R | 2 tests/testthat/test_hill_phyl.R | 20 ++++++ tests/testthat/test_hill_taxa.R | 18 +++++- 26 files changed, 524 insertions(+), 309 deletions(-)
Title: GOV.UK Style Templates for R Markdown
Description: A suite of custom R Markdown formats and templates
for authoring web pages styled with the GOV.UK Design System.
Author: Crown Copyright 2019 [cph],
Duncan Garmonsway [aut, cre]
Maintainer: Duncan Garmonsway <duncan.garmonsway@digital.cabinet-office.gov.uk>
Diff between govdown versions 0.9.1 dated 2020-05-13 and 0.10.0 dated 2020-07-07
DESCRIPTION | 6 MD5 | 10 NEWS.md | 5 inst/rmarkdown/resources/all.js | 52 +-- inst/rmarkdown/resources/govuk.css | 479 +++++++++++----------------------- inst/rmarkdown/resources/govukish.css | 479 +++++++++++----------------------- 6 files changed, 365 insertions(+), 666 deletions(-)
Title: Computational Methods for Numerical Analysis
Description: Provides the source and examples for James P. Howard, II,
"Computational Methods for Numerical Analysis with R,"
<https://jameshoward.us/cmna>, a book on numerical
methods in R.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>)
Maintainer: James Howard <jh@jameshoward.us>
Diff between cmna versions 1.0.2 dated 2019-07-23 and 1.0.3 dated 2020-07-07
DESCRIPTION | 18 ++++----- MD5 | 90 ++++++++++++++++++++++++------------------------ README.md | 23 ++++++++++-- inst/CITATION | 2 - inst/COPYRIGHTS | 2 - man/adaptint.Rd | 26 +++++++++---- man/bezier.Rd | 11 +++-- man/bilinear.Rd | 28 +++++++++----- man/bisection.Rd | 11 +++-- man/choleskymatrix.Rd | 15 +++++--- man/cmna-package.Rd | 4 +- man/cubicspline.Rd | 27 +++++++++----- man/detmatrix.Rd | 15 +++++--- man/division.Rd | 17 +++++---- man/fibonacci.Rd | 17 +++++---- man/gaussint.Rd | 15 +++++--- man/gdls.Rd | 15 +++++--- man/giniquintile.Rd | 26 +++++++++---- man/goldsect.Rd | 11 +++-- man/gradient.Rd | 11 +++-- man/hillclimbing.Rd | 11 +++-- man/horner.Rd | 17 +++++---- man/invmatrix.Rd | 15 +++++--- man/isPrime.Rd | 17 +++++---- man/iterativematrix.Rd | 15 +++++--- man/linterp.Rd | 27 +++++++++----- man/lumatrix.Rd | 15 +++++--- man/mcint.Rd | 15 +++++--- man/midpt.Rd | 26 +++++++++---- man/newton.Rd | 11 +++-- man/nn.Rd | 10 +++-- man/nthroot.Rd | 17 +++++---- man/polyinterp.Rd | 27 +++++++++----- man/pwiselinterp.Rd | 27 +++++++++----- man/quadratic.Rd | 17 +++++---- man/refmatrix.Rd | 15 +++++--- man/revolution-solid.Rd | 15 +++++--- man/romberg.Rd | 26 +++++++++---- man/rowops.Rd | 15 +++++--- man/sa.Rd | 11 +++-- man/secant.Rd | 11 +++-- man/simp.Rd | 26 +++++++++---- man/simp38.Rd | 26 +++++++++---- man/trap.Rd | 26 +++++++++---- man/tridiagmatrix.Rd | 15 +++++--- man/vecnorm.Rd | 15 +++++--- 46 files changed, 545 insertions(+), 307 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The goal
of 'workflows' is to streamline this process by bundling the model alongside
the preprocessor, all within the same object.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between workflows versions 0.1.1 dated 2020-03-17 and 0.1.2 dated 2020-07-07
workflows-0.1.1/workflows/R/data.R |only workflows-0.1.1/workflows/data |only workflows-0.1.1/workflows/man/bivariate.Rd |only workflows-0.1.2/workflows/DESCRIPTION | 16 workflows-0.1.2/workflows/MD5 | 64 +-- workflows-0.1.2/workflows/NAMESPACE | 2 workflows-0.1.2/workflows/NEWS.md | 10 workflows-0.1.2/workflows/R/fit-action-model.R | 2 workflows-0.1.2/workflows/R/fit.R | 113 +++++- workflows-0.1.2/workflows/R/pre-action-formula.R | 18 - workflows-0.1.2/workflows/R/pre-action-recipe.R | 20 - workflows-0.1.2/workflows/R/predict.R | 13 workflows-0.1.2/workflows/R/pull.R | 37 +- workflows-0.1.2/workflows/R/tidy.R |only workflows-0.1.2/workflows/R/utils.R | 10 workflows-0.1.2/workflows/R/workflow.R | 28 + workflows-0.1.2/workflows/R/workflows-package.R | 1 workflows-0.1.2/workflows/README.md | 25 + workflows-0.1.2/workflows/build/vignette.rds |binary workflows-0.1.2/workflows/inst/doc/stages.html | 16 workflows-0.1.2/workflows/man/add_formula.Rd | 176 +++++++++- workflows-0.1.2/workflows/man/add_model.Rd | 107 ++++++ workflows-0.1.2/workflows/man/add_recipe.Rd | 17 workflows-0.1.2/workflows/man/figures |only workflows-0.1.2/workflows/man/fit-workflow.Rd | 132 ++++++- workflows-0.1.2/workflows/man/predict-workflow.Rd | 19 - workflows-0.1.2/workflows/man/rmd |only workflows-0.1.2/workflows/man/tidy.workflow.Rd |only workflows-0.1.2/workflows/man/workflow-extractors.Rd | 37 +- workflows-0.1.2/workflows/man/workflow.Rd | 133 +++++++ workflows-0.1.2/workflows/man/workflows-internals.Rd | 16 workflows-0.1.2/workflows/man/workflows-package.Rd | 3 workflows-0.1.2/workflows/tests/testthat/out/test-print-workflow-fit.txt | 2 workflows-0.1.2/workflows/tests/testthat/test-fit.R | 87 ++++ workflows-0.1.2/workflows/tests/testthat/test-tidy.R |only workflows-0.1.2/workflows/vignettes/extras/getting-started.Rmd | 7 36 files changed, 951 insertions(+), 160 deletions(-)
Title: Genotype Quality Control with 'PLINK'
Description: Genotyping arrays enable the direct measurement of an individuals
genotype at thousands of markers. 'plinkQC' facilitates genotype quality
control for genetic association studies as described by Anderson and
colleagues (2010) <doi:10.1038/nprot.2010.116>. It makes 'PLINK' basic
statistics (e.g. missing genotyping rates per individual, allele frequencies
per genetic marker) and relationship functions accessible from 'R' and
generates a per-individual and per-marker quality control report.
Individuals and markers that fail the quality control can subsequently be
removed to generate a new, clean dataset. Removal of individuals based on
relationship status is optimised to retain as many individuals as possible
in the study.
Author: Hannah Meyer [aut, cre] (<https://orcid.org/0000-0003-4564-0899>)
Maintainer: Hannah Meyer <hannah.v.meyer@gmail.com>
Diff between plinkQC versions 0.3.0 dated 2019-10-19 and 0.3.2 dated 2020-07-07
plinkQC-0.3.0/plinkQC/inst/extdata/data.fail-IBD.IDs |only plinkQC-0.3.2/plinkQC/DESCRIPTION | 8 plinkQC-0.3.2/plinkQC/MD5 | 99 +++++----- plinkQC-0.3.2/plinkQC/NEWS.md | 49 +++- plinkQC-0.3.2/plinkQC/R/individualQC.R | 52 +++-- plinkQC-0.3.2/plinkQC/R/plinkQC.R | 2 plinkQC-0.3.2/plinkQC/R/utils.R | 2 plinkQC-0.3.2/plinkQC/README.md | 14 - plinkQC-0.3.2/plinkQC/build/vignette.rds |binary plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.R | 4 plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.Rmd | 48 +++- plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.R | 2 plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.Rmd | 6 plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/HapMap.R | 2 plinkQC-0.3.2/plinkQC/inst/doc/HapMap.Rmd | 14 + plinkQC-0.3.2/plinkQC/inst/doc/HapMap.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.R | 41 ++-- plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.Rmd | 14 + plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.pdf |binary plinkQC-0.3.2/plinkQC/man/checkPlink.Rd | 2 plinkQC-0.3.2/plinkQC/man/check_ancestry.Rd | 38 +++ plinkQC-0.3.2/plinkQC/man/check_het_and_miss.Rd | 19 + plinkQC-0.3.2/plinkQC/man/check_hwe.Rd | 15 + plinkQC-0.3.2/plinkQC/man/check_maf.Rd | 16 + plinkQC-0.3.2/plinkQC/man/check_relatedness.Rd | 20 +- plinkQC-0.3.2/plinkQC/man/check_sex.Rd | 26 ++ plinkQC-0.3.2/plinkQC/man/check_snp_missingness.Rd | 15 + plinkQC-0.3.2/plinkQC/man/cleanData.Rd | 28 ++ plinkQC-0.3.2/plinkQC/man/evaluate_check_ancestry.Rd | 30 ++- plinkQC-0.3.2/plinkQC/man/evaluate_check_het_and_miss.Rd | 10 - plinkQC-0.3.2/plinkQC/man/evaluate_check_relatedness.Rd | 10 - plinkQC-0.3.2/plinkQC/man/evaluate_check_sex.Rd | 25 +- plinkQC-0.3.2/plinkQC/man/perIndividualQC.Rd | 66 ++++-- plinkQC-0.3.2/plinkQC/man/perMarkerQC.Rd | 23 +- plinkQC-0.3.2/plinkQC/man/plinkQC.Rd | 3 plinkQC-0.3.2/plinkQC/man/relatednessFilter.Rd | 22 +- plinkQC-0.3.2/plinkQC/man/run_check_ancestry.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_heterozygosity.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_missingness.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_relatedness.Rd | 16 + plinkQC-0.3.2/plinkQC/man/run_check_sex.Rd | 12 - plinkQC-0.3.2/plinkQC/man/testNumerics.Rd | 3 plinkQC-0.3.2/plinkQC/tests/testthat/data.HapMapIII_no_samples.eigenvec |only plinkQC-0.3.2/plinkQC/tests/testthat/data.HapMapIII_some_samples.eigenvec |only plinkQC-0.3.2/plinkQC/tests/testthat/test-individualQC.R | 26 ++ plinkQC-0.3.2/plinkQC/tests/testthat/test-utils.R | 19 - plinkQC-0.3.2/plinkQC/vignettes/AncestryCheck.Rmd | 48 +++- plinkQC-0.3.2/plinkQC/vignettes/Genomes1000.Rmd | 6 plinkQC-0.3.2/plinkQC/vignettes/HapMap.Rmd | 14 + plinkQC-0.3.2/plinkQC/vignettes/plinkQC.Rmd | 14 + 52 files changed, 647 insertions(+), 272 deletions(-)
Title: Larger-than-RAM Disk-Based Data Manipulation Framework
Description: A disk-based data manipulation tool for working with
large-than-RAM datasets. Aims to lower the barrier-to-entry for
manipulating large datasets by adhering closely to popular and
familiar data manipulation paradigms like 'dplyr' verbs and
'data.table' syntax.
Author: Dai ZJ [aut, cre],
Jacky Poon [ctb]
Maintainer: Dai ZJ <zhuojia.dai@gmail.com>
Diff between disk.frame versions 0.3.6 dated 2020-06-13 and 0.3.7 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/add_chunk.r | 7 ++++--- R/pull.r | 2 +- README.md | 47 ++++++++++++++++++++--------------------------- man/add_chunk.Rd | 4 +++- man/pull.disk.frame.Rd | 2 +- 8 files changed, 44 insertions(+), 44 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.0.1 dated 2020-04-20 and 3.0.2 dated 2020-07-07
tibble-3.0.1/tibble/build/tibble.pdf |only tibble-3.0.2/tibble/DESCRIPTION | 15 tibble-3.0.2/tibble/MD5 | 112 ++--- tibble-3.0.2/tibble/NAMESPACE | 3 tibble-3.0.2/tibble/NEWS.md | 19 tibble-3.0.2/tibble/R/add.R | 8 tibble-3.0.2/tibble/R/as_tibble.R | 11 tibble-3.0.2/tibble/R/compat-lazyeval.R | 2 tibble-3.0.2/tibble/R/deprecated.R | 2 tibble-3.0.2/tibble/R/enframe.R | 10 tibble-3.0.2/tibble/R/glimpse.R | 8 tibble-3.0.2/tibble/R/legacy-compat.R |only tibble-3.0.2/tibble/R/lst.R | 4 tibble-3.0.2/tibble/R/names.R | 4 tibble-3.0.2/tibble/R/new.R | 2 tibble-3.0.2/tibble/R/options.R | 8 tibble-3.0.2/tibble/R/print.R | 14 tibble-3.0.2/tibble/R/rownames.R | 2 tibble-3.0.2/tibble/R/subsetting-matrix.R | 2 tibble-3.0.2/tibble/R/subsetting.R | 288 ++++++++------- tibble-3.0.2/tibble/R/tbl_sum.R | 8 tibble-3.0.2/tibble/R/tibble-package.R | 4 tibble-3.0.2/tibble/R/tibble.R | 16 tibble-3.0.2/tibble/R/tidy_names.R | 2 tibble-3.0.2/tibble/R/tribble.R | 30 + tibble-3.0.2/tibble/R/view.R | 2 tibble-3.0.2/tibble/build/vignette.rds |binary tibble-3.0.2/tibble/inst/doc/invariants.html | 113 ++--- tibble-3.0.2/tibble/inst/doc/types.html | 81 ++-- tibble-3.0.2/tibble/man/as_tibble.Rd | 10 tibble-3.0.2/tibble/man/deprecated.Rd | 2 tibble-3.0.2/tibble/man/enframe.Rd | 2 tibble-3.0.2/tibble/man/formatting.Rd | 10 tibble-3.0.2/tibble/man/frame_matrix.Rd | 2 tibble-3.0.2/tibble/man/glimpse.Rd | 8 tibble-3.0.2/tibble/man/is.tibble.Rd | 2 tibble-3.0.2/tibble/man/lst.Rd | 4 tibble-3.0.2/tibble/man/name-repair-superseded.Rd | 2 tibble-3.0.2/tibble/man/new_tibble.Rd | 2 tibble-3.0.2/tibble/man/print.tbl_df.Rd | 2 tibble-3.0.2/tibble/man/reexports.Rd | 5 tibble-3.0.2/tibble/man/subsetting.Rd | 4 tibble-3.0.2/tibble/man/tbl_sum.Rd | 4 tibble-3.0.2/tibble/man/tibble-package.Rd | 2 tibble-3.0.2/tibble/man/tibble.Rd | 6 tibble-3.0.2/tibble/man/tribble.Rd | 2 tibble-3.0.2/tibble/man/view.Rd | 2 tibble-3.0.2/tibble/tests/testthat/as_tibble.txt | 2 tibble-3.0.2/tibble/tests/testthat/helper-expectations.R | 2 tibble-3.0.2/tibble/tests/testthat/helper-my.R |only tibble-3.0.2/tibble/tests/testthat/subsetting.txt | 190 +++++---- tibble-3.0.2/tibble/tests/testthat/tbl_sum.txt | 6 tibble-3.0.2/tibble/tests/testthat/test-add.R | 9 tibble-3.0.2/tibble/tests/testthat/test-legacy-compat.R |only tibble-3.0.2/tibble/tests/testthat/test-subsetting.R | 45 ++ tibble-3.0.2/tibble/tests/testthat/test-tbl_sum.R | 2 tibble-3.0.2/tibble/tests/testthat/test-tribble.R | 22 + tibble-3.0.2/tibble/tests/testthat/test-zzz-tribble.R | 2 tibble-3.0.2/tibble/tests/testthat/tribble.txt | 3 59 files changed, 653 insertions(+), 471 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as
described in Vehtari, Gelman, and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS),
a new procedure for regularizing importance weights.
As a byproduct of the calculations, we also obtain approximate
standard errors for estimated predictive errors and for the comparison
of predictive errors between models. The package also provides methods
for using stacking and other model weighting techniques to average
Bayesian predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Bürkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 2.2.0 dated 2019-12-19 and 2.3.0 dated 2020-07-07
loo-2.2.0/loo/inst/doc/loo2-non-factorizable.R |only loo-2.2.0/loo/inst/doc/loo2-non-factorizable.Rmd |only loo-2.2.0/loo/inst/doc/loo2-non-factorizable.html |only loo-2.2.0/loo/vignettes/loo2-non-factorizable.Rmd |only loo-2.3.0/loo/DESCRIPTION | 16 loo-2.3.0/loo/MD5 | 140 +- loo-2.3.0/loo/NAMESPACE | 5 loo-2.3.0/loo/NEWS.md | 18 loo-2.3.0/loo/R/compare.R | 4 loo-2.3.0/loo/R/diagnostics.R | 62 loo-2.3.0/loo/R/importance_sampling.R | 27 loo-2.3.0/loo/R/loo-glossary.R | 18 loo-2.3.0/loo/R/loo-package.R | 17 loo-2.3.0/loo/R/loo.R | 54 loo-2.3.0/loo/R/loo_compare.R | 3 loo-2.3.0/loo/R/loo_model_weights.R | 3 loo-2.3.0/loo/R/loo_moment_matching.R |only loo-2.3.0/loo/R/loo_subsample.R | 12 loo-2.3.0/loo/R/psis.R | 22 loo-2.3.0/loo/R/sis.R | 25 loo-2.3.0/loo/R/split_moment_matching.R |only loo-2.3.0/loo/R/tis.R | 29 loo-2.3.0/loo/R/waic.R | 4 loo-2.3.0/loo/build/vignette.rds |binary loo-2.3.0/loo/inst/doc/loo2-example.R | 28 loo-2.3.0/loo/inst/doc/loo2-example.Rmd | 9 loo-2.3.0/loo/inst/doc/loo2-example.html | 197 +- loo-2.3.0/loo/inst/doc/loo2-large-data.R | 32 loo-2.3.0/loo/inst/doc/loo2-large-data.Rmd | 31 loo-2.3.0/loo/inst/doc/loo2-large-data.html | 327 ++-- loo-2.3.0/loo/inst/doc/loo2-lfo.R | 206 +-- loo-2.3.0/loo/inst/doc/loo2-lfo.Rmd | 307 ++-- loo-2.3.0/loo/inst/doc/loo2-lfo.html | 674 ++++------ loo-2.3.0/loo/inst/doc/loo2-moment-matching.R |only loo-2.3.0/loo/inst/doc/loo2-moment-matching.Rmd |only loo-2.3.0/loo/inst/doc/loo2-moment-matching.html |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.R |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.Rmd |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.html |only loo-2.3.0/loo/inst/doc/loo2-weights.R | 42 loo-2.3.0/loo/inst/doc/loo2-weights.Rmd | 2 loo-2.3.0/loo/inst/doc/loo2-weights.html | 388 ++--- loo-2.3.0/loo/inst/doc/loo2-with-rstan.R | 10 loo-2.3.0/loo/inst/doc/loo2-with-rstan.Rmd | 9 loo-2.3.0/loo/inst/doc/loo2-with-rstan.html | 125 - loo-2.3.0/loo/man/compare.Rd | 8 loo-2.3.0/loo/man/loo-glossary.Rd | 22 loo-2.3.0/loo/man/loo-package.Rd | 19 loo-2.3.0/loo/man/loo.Rd | 37 loo-2.3.0/loo/man/loo_compare.Rd | 4 loo-2.3.0/loo/man/loo_model_weights.Rd | 7 loo-2.3.0/loo/man/loo_moment_match.Rd |only loo-2.3.0/loo/man/loo_moment_match_split.Rd |only loo-2.3.0/loo/man/pareto-k-diagnostic.Rd | 57 loo-2.3.0/loo/man/print.loo.Rd | 2 loo-2.3.0/loo/man/psis.Rd | 39 loo-2.3.0/loo/man/psis_approximate_posterior.Rd | 4 loo-2.3.0/loo/man/psislw.Rd | 4 loo-2.3.0/loo/man/sis.Rd | 18 loo-2.3.0/loo/man/tis.Rd | 20 loo-2.3.0/loo/man/waic.Rd | 8 loo-2.3.0/loo/man/weights.importance_sampling.Rd |only loo-2.3.0/loo/tests/testthat/reference-results/loo.rds |binary loo-2.3.0/loo/tests/testthat/reference-results/mcse_loo.rds |binary loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_1.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_2.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_3.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_Stan_1.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_split.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_var_and_cov.rds |only loo-2.3.0/loo/tests/testthat/reference-results/psis.rds |binary loo-2.3.0/loo/tests/testthat/test_loo_and_waic.R | 6 loo-2.3.0/loo/tests/testthat/test_loo_moment_matching.R |only loo-2.3.0/loo/tests/testthat/test_loo_subsampling.R | 10 loo-2.3.0/loo/tests/testthat/test_print_plot.R | 9 loo-2.3.0/loo/tests/testthat/test_tisis.R | 8 loo-2.3.0/loo/vignettes/loo2-example.Rmd | 9 loo-2.3.0/loo/vignettes/loo2-large-data.Rmd | 31 loo-2.3.0/loo/vignettes/loo2-lfo.Rmd | 307 ++-- loo-2.3.0/loo/vignettes/loo2-moment-matching.Rmd |only loo-2.3.0/loo/vignettes/loo2-non-factorized.Rmd |only loo-2.3.0/loo/vignettes/loo2-weights.Rmd | 2 loo-2.3.0/loo/vignettes/loo2-with-rstan.Rmd | 9 83 files changed, 1770 insertions(+), 1716 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.0.4 dated 2020-07-05 and 1.0.5 dated 2020-07-07
DESCRIPTION | 6 - MD5 | 12 +-- R/logr.R | 186 ++++++++++++++++++++++++++++++----------------------- README.md | 7 + inst/doc/logr.Rmd | 7 + inst/doc/logr.html | 7 + vignettes/logr.Rmd | 7 + 7 files changed, 138 insertions(+), 94 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation,
the model-based unit-level approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
the area-level model (see "Estimates of income for small places: An
application of James-Stein procedures to Census Data" by (Fay and Herriot 1979)
<doi:10.1080/01621459.1979.10482505>) and various extensions of it (adjusted variance estimation methods,
log and arcsin transformation, spatial, robust and measurement error models),
as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel. For a detailed description of the package and the methods used
see "The {R} Package {emdi} for Estimating and Mapping Regionally Disaggregated Indicators"
by Kreutzmann et al. (2019) <doi:10.18637/jss.v091.i07>.
Author: Sylvia Harmening [aut],
Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Natalia Rojas-Perilla [aut],
Nicola Salvati [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut],
Nora Würz [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 1.1.7 dated 2020-03-18 and 2.0.0 dated 2020-07-07
DESCRIPTION | 37 +- MD5 | 154 ++++++-- NAMESPACE | 39 ++ NEWS.md | 13 R/FH.R |only R/auxiliary_functions.R |only R/back_transformation.R |only R/benchmark.R |only R/check_compare_arguments.R | 29 - R/check_estimators_arguments.R | 31 + R/check_fh_arguments.R |only R/combine_data.R |only R/compare.R | 355 ++++++------------- R/compare_plot.R |only R/direct_estimation.R | 16 R/drop1.add1.fh.R |only R/eblup.R |only R/eblup_robust.R |only R/ebp.R | 17 R/emdi.R | 41 +- R/emdiObject.R | 90 ++-- R/estim_sigmau2.R |only R/estimators.emdi.R | 115 +++--- R/eusilcA_popAgg.R |only R/eusilcA_prox.R |only R/eusilcA_smpAgg.R |only R/framework_direct.R | 8 R/framework_ebp.R | 1 R/framework_fh.R |only R/map_plot.R | 34 - R/mse.R |only R/mse_emdi.R | 19 - R/plot.emdi.R | 514 ++++++++++++++++------------ R/point_emdi.R | 48 +- R/print.emdi.R | 99 +++-- R/spatialcor.R |only R/step.R |only R/summary.emdi.R | 292 +++++++++++---- R/transformation_functions.R | 4 R/variable_selection.R |only R/write.excel.emdi.R | 179 ++++++++- R/write.ods.emdi.R | 82 +++- build/vignette.rds |binary data/eusilcA_popAgg.rda |only data/eusilcA_prox.rda |only data/eusilcA_smpAgg.rda |only inst/COPYRIGHTS | 5 inst/doc/vignette_fh.pdf |only inst/doc/vignette_fh.pdf.asis |only man/benchmark.Rd |only man/combine_data.Rd |only man/compare.Rd |only man/compare.fh.Rd |only man/compare_plot.Rd | 114 ++---- man/compare_plot.emdi.Rd |only man/data_transformation.Rd | 4 man/direct.Rd | 16 man/ebp.Rd | 13 man/emdi.Rd | 41 +- man/emdiObject.Rd | 88 ++-- man/estimators.Rd | 15 man/estimators.emdi.Rd | 35 + man/eusilcA_popAgg.Rd |only man/eusilcA_prox.Rd |only man/eusilcA_smpAgg.Rd |only man/fh.Rd |only man/head.estimators.emdi.Rd | 16 man/map_plot.Rd | 25 - man/plot.emdi.Rd | 148 ++++---- man/print.compare.fh.Rd |only man/print.emdi.Rd | 6 man/print.step.Rd |only man/print.summary.emdi.Rd | 2 man/spatialcor.tests.Rd |only man/step.Rd |only man/step.fh.Rd |only man/subset.estimators.emdi.Rd | 8 man/summary.emdi.Rd | 91 ++-- man/tail.estimators.emdi.Rd | 22 - man/write.excel.Rd | 21 - tests/testthat/FH |only tests/testthat/test_fh_std_spatial_robust.R |only tests/testthat/test_fh_transformation.R |only tests/testthat/test_fh_variance.R |only vignettes/vignette_fh.pdf.asis |only 85 files changed, 1704 insertions(+), 1183 deletions(-)
Title: Tools for Analysing Forensic Genetic DNA Data
Description: Computationally efficient tools for comparing all pairs of profiles
in a DNA database. The expectation and covariance of the summary statistic
is implemented for fast computing. Routines for estimating proportions of
close related individuals are available. The use of wildcards (also called F-
designation) is implemented. Dedicated functions ease plotting the results.
See Tvedebrink et al. (2012) <doi:10.1016/j.fsigen.2011.08.001>.
Compute the distribution of the numbers of alleles in DNA mixtures.
See Tvedebrink (2013) <doi:10.1016/j.fsigss.2013.10.142>.
Author: Torben Tvedebrink [aut],
James Curran [aut],
Mikkel Meyer Andersen [aut, cre]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between DNAtools versions 0.2-2 dated 2020-03-03 and 0.2-3 dated 2020-07-07
DESCRIPTION | 13 ++- MD5 | 16 ++-- NEWS | 3 build/vignette.rds |binary inst/doc/db_vignette.html | 76 +++++++++++----------- inst/doc/dna_vignette.html | 10 +-- inst/doc/noa_vignette.html | 140 +++++++++++++++++++++--------------------- man/dbExample.Rd | 6 + tests/testthat/test-compare.R | 9 +- 9 files changed, 142 insertions(+), 131 deletions(-)
Title: Tools for Creating Automated Courses
Description: Leverages the 'ari' package and other tools to create automated
courses from slides and a script. Also, uploads these to
'YouTube' and other services using 'tuber' package.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between ariExtra versions 0.2.7 dated 2020-07-03 and 0.2.9 dated 2020-07-07
DESCRIPTION | 6 +-- MD5 | 32 ++++++++++------- NEWS.md | 8 ++++ R/gs_ari.R | 59 +++++++++++++++++++++++++++++---- R/make_ari_document.R | 1 R/rmd_to_ari.R | 58 +++++++++++++++++++++++++------- README.md | 8 +--- inst/doc/making_videos.R | 15 +++++++- inst/doc/making_videos.Rmd | 15 +++++++- inst/doc/making_videos.html | 39 +++++++++++++-------- inst/extdata/lucy-demo-noggplot2.Rmd |only inst/extdata/lucy-demo-noggplot2.html |only inst/extdata/lucy-demo-noggplot2_files |only man/gs_to_ari.Rd | 31 +++++++++++++---- man/rmd_to_ari.Rd | 34 ++++++++++++------- tests/testthat/test-rmd_to_ari.R | 23 ++++++++++-- vignettes/making_videos.Rmd | 15 +++++++- 17 files changed, 263 insertions(+), 81 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.9.1 dated 2020-06-03 and 1.9.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 7 +++++++ R/Jointlcmm.R | 7 ++++--- R/lcmm-package.R | 4 ++-- R/mpjlcmm.R | 5 ++++- R/predYmedian.R | 24 +++++++++++++++++------- build/partial.rdb |binary man/Jointlcmm.Rd | 12 ++++++------ man/lcmm-package.Rd | 4 ++-- src/mpjhet.f90 | 11 ++++++++--- 11 files changed, 64 insertions(+), 38 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.4.1 dated 2020-06-09 and 0.4.2 dated 2020-07-07
DESCRIPTION | 8 +- MD5 | 18 ++-- NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting-started.html | 20 ++++- inst/doc/inapplicable.html | 143 ++++++++++++++++++++------------------- inst/doc/profile-scores.html | 20 ++++- inst/doc/profile.html | 26 +++++-- tests/testthat/test-TreeSearch.R | 19 +++-- 10 files changed, 159 insertions(+), 99 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates weights to form equivalent groups in observational studies with point or longitudinal treatments by easing and extending the functionality of the R packages 'twang' for generalized boosted modeling (McCaffrey, Ridgeway & Morral, 2004) <doi:10.1037/1082-989X.9.4.403>, 'CBPS' for covariate balancing propensity score weighting (Imai & Ratkovic, 2014) <doi:10.1111/rssb.12027>, 'ebal' for entropy balancing (Hainmueller, 2012) <doi:10.1093/pan/mpr025>, 'optweight' for optimization-based weights (Zubizarreta, 2015) <doi:10.1080/01621459.2015.1023805>, 'ATE' for empirical balancing calibration weighting (Chan, Yam, & Zhang, 2016) <doi:10.1111/rssb.12129>, and 'SuperLearner' for stacked machine learning-based propensity scores (Pirracchio, Petersen, & van der Laan, 2015) <doi:10.1093/aje/kwu253>. Also allows for assessment of weights and checking of covariate balance by interfacing directly with 'cobalt'.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 0.9.0 dated 2020-02-11 and 0.10.0 dated 2020-07-07
DESCRIPTION | 19 MD5 | 73 +-- NAMESPACE | 7 NEWS.md | 24 + R/SHARED.R | 356 +++++++++++---- R/balance.criteria.R |only R/functions_for_processing.R | 660 ++++++++++++++++++++-------- R/sbps.R | 2 R/trim.R | 116 ++--- R/utilities.R | 73 +-- R/weightit.R | 44 + R/weightit.fit.R | 85 ++- R/weightit2method.R | 829 ++++++++++++++++++++---------------- R/weightitMSM.R | 63 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/WeightIt_A0_basic_use.R | 2 inst/doc/WeightIt_A0_basic_use.Rmd | 2 inst/doc/WeightIt_A0_basic_use.html | 458 ++++++------------- man/ESS.Rd | 2 man/get_w_from_ps.Rd | 14 man/make_full_rank.Rd | 5 man/method-cbps.Rd | 5 man/method-ebal.Rd | 3 man/method-energy.Rd |only man/method-gbm.Rd | 26 - man/method-npcbps.Rd | 3 man/method-optweight.Rd | 17 man/method-ps.Rd | 20 man/method-super.Rd | 14 man/method-twang.Rd | 2 man/ps.cont.Rd | 7 man/sbps.Rd | 7 man/stop.method.Rd |only man/summary.weightit.Rd | 1 man/trim.Rd | 20 man/weightit.Rd | 34 - man/weightitMSM.Rd | 4 vignettes/WeightIt_A0_basic_use.Rmd | 2 39 files changed, 1764 insertions(+), 1235 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>),
Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.0.0 dated 2020-06-08 and 1.1.0 dated 2020-07-07
DESCRIPTION | 12 - MD5 | 97 ++++---- NAMESPACE | 29 ++ NEWS.md | 23 + R/RcppExports.R | 4 R/Splits.R | 12 - R/TreeNumber.R | 24 +- R/helper_functions.R | 48 +++- R/tree_generation.R | 48 +++- R/tree_properties.R | 43 +++ R/tree_rearrangement.R | 138 +++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/filesystem-navigation.html | 20 + inst/doc/load-data.html | 20 + inst/doc/load-trees.Rmd | 2 inst/doc/load-trees.html | 28 +- man/AddTip.Rd | 1 man/CollapseNode.Rd | 1 man/ConsensusWithout.Rd | 2 man/DropTip.Rd | 1 man/EnforceOutgroup.Rd | 1 man/GenerateTree.Rd | 135 +++++------ man/LeafLabelInterchange.Rd | 1 man/MakeTreeBinary.Rd |only man/NSplits.Rd | 2 man/NTip.Rd | 2 man/Renumber.Rd | 1 man/RenumberTips.Rd | 1 man/Reorder.Rd | 1 man/RootTree.Rd | 8 man/SingleTaxonTree.Rd | 1 man/SortTree.Rd | 1 man/SplitsInBinaryTree.Rd |only man/Subtree.Rd | 1 man/TipLabels.Rd | 2 man/TipsInSplits.Rd | 1 man/TreeIsRooted.Rd | 1 man/TreeNumber.Rd | 322 +++++++++++++-------------- man/as.Splits.Rd | 1 man/dot-RandomParent.Rd |only man/match.Rd | 6 man/sapply64.Rd |only src/RcppExports.cpp | 18 + src/TreeTools-init.c | 2 src/int_to_tree.cpp | 43 +++ tests/testthat/test-tree_generation-random.R |only tests/testthat/test-tree_generation.R | 2 tests/testthat/test-tree_properties.R | 6 tests/testthat/test-tree_rearrange.R | 54 ++++ vignettes/load-trees.Rmd | 2 52 files changed, 847 insertions(+), 322 deletions(-)
Title: An Implementation of Isolation Forest
Description: Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Author: Komala Sheshachala Srikanth [aut, cre]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between solitude versions 1.0.0 dated 2020-07-05 and 1.0.1 dated 2020-07-07
DESCRIPTION | 10 +- MD5 | 10 +- NEWS.md | 13 ++- R/isolationForest_r6.R | 157 +++++++++++++++++++++++++------------------ README.md | 176 +++++++++++++++++++++++++------------------------ man/isolationForest.Rd | 46 ++++++------ 6 files changed, 221 insertions(+), 191 deletions(-)
Title: Define and Work with Parameter Spaces for Complex Algorithms
Description: Define parameter spaces, constraints and
dependencies for arbitrary algorithms, to program on such spaces. Also
includes statistical designs and random samplers. Objects are
implemented as 'R6' classes.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Xudong Sun [aut] (<https://orcid.org/0000-0003-3269-2307>),
Martin Binder [aut],
Marc Becker [ctb] (<https://orcid.org/0000-0002-8115-0400>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between paradox versions 0.2.0 dated 2020-04-15 and 0.3.0 dated 2020-07-07
DESCRIPTION | 20 + MD5 | 98 +++---- NEWS.md | 7 R/Condition.R | 51 ++- R/Design.R | 63 ++-- R/Param.R | 138 ++++++---- R/ParamDbl.R | 47 +-- R/ParamFct.R | 47 +-- R/ParamInt.R | 44 +-- R/ParamLgl.R | 42 --- R/ParamSet.R | 296 ++++++++++++++--------- R/ParamSetCollection.R | 42 +-- R/ParamUty.R | 54 +--- R/Sampler.R | 47 +-- R/Sampler1D.R | 157 +++--------- R/SamplerHierarchical.R | 29 -- R/SamplerJointIndep.R | 27 -- R/SamplerUnif.R | 14 - R/asserts.R | 3 R/generate_design_grid.R | 6 R/generate_design_lhs.R | 6 R/generate_design_random.R | 4 R/helper.R |only README.md | 8 man/Condition.Rd | 140 +++++++++- man/Design.Rd | 117 +++++++-- man/Param.Rd | 308 +++++++++++++++++++---- man/ParamDbl.Rd | 169 ++++++++++--- man/ParamFct.Rd | 162 +++++++++--- man/ParamInt.Rd | 168 ++++++++++--- man/ParamLgl.Rd | 150 ++++++++--- man/ParamSet.Rd | 527 +++++++++++++++++++++++++++++++++-------- man/ParamSetCollection.Rd | 138 +++++++++- man/ParamUty.Rd | 161 +++++++++--- man/Sampler.Rd | 132 ++++++++-- man/Sampler1D.Rd | 94 +++++-- man/Sampler1DCateg.Rd | 95 +++++-- man/Sampler1DNormal.Rd | 107 +++++--- man/Sampler1DRfun.Rd | 105 +++++--- man/Sampler1DUnif.Rd | 77 ++++- man/SamplerHierarchical.Rd | 96 +++++-- man/SamplerJointIndep.Rd | 90 ++++--- man/SamplerUnif.Rd | 74 ++++- man/assert_param.Rd | 2 man/generate_design_grid.Rd | 6 man/generate_design_lhs.Rd | 6 man/generate_design_random.Rd | 4 man/paradox-package.Rd | 5 man/transpose.Rd |only tests/testthat/test_ParamSet.R | 31 ++ tests/testthat/test_sampler.R | 6 51 files changed, 2924 insertions(+), 1296 deletions(-)
More information about predReliability at CRAN
Permanent link
Title: Model-Based Clustering of Network Data
Description: Clustering unilayer and multilayer network data by means of finite mixtures is the main utility of 'netClust'.
Author: Shuchismita Sarkar [aut, cre],
Volodymyr Melnykov [aut]
Maintainer: Shuchismita Sarkar <ssarkar@bgsu.edu>
Diff between netClust versions 1.0 dated 2020-07-06 and 1.0.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/netClust.cpp | 38 ++++++++++++++++++++++++-------------- 4 files changed, 30 insertions(+), 20 deletions(-)
More information about DetLifeInsurance at CRAN
Permanent link
Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level
I/O programming that provides developers with a consistent asynchronous model
using a modern C++ approach. It is also included in Boost but requires linking
when used with Boost. Standalone it can be used header-only (provided a recent
compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and
released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between AsioHeaders versions 1.12.2-1 dated 2020-03-11 and 1.16.1-1 dated 2020-07-07
AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/datagram_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/deadline_timer_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/experimental |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/experimental.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/handler_type.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/ip/resolver_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/posix/stream_descriptor_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/raw_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/seq_packet_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/serial_port_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/signal_set_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/socket_acceptor_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/stream_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/waitable_timer_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/basic_handle.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/object_handle_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/random_access_handle_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/stream_handle_service.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/ChangeLog | 20 AsioHeaders-1.16.1-1/AsioHeaders/DESCRIPTION | 8 AsioHeaders-1.16.1-1/AsioHeaders/MD5 | 969 ++-- AsioHeaders-1.16.1-1/AsioHeaders/NAMESPACE | 6 AsioHeaders-1.16.1-1/AsioHeaders/README.md | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/NEWS.Rd | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio.hpp | 29 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/associated_allocator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/associated_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/async_result.hpp | 498 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_datagram_socket.hpp | 690 +-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_deadline_timer.hpp | 295 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_io_object.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_raw_socket.hpp | 692 +-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_seq_packet_socket.hpp | 426 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_serial_port.hpp | 413 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_signal_set.hpp | 309 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket.hpp | 591 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_acceptor.hpp | 1437 ++++-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_iostream.hpp | 65 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_streambuf.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_stream_socket.hpp | 524 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_streambuf.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_streambuf_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_waitable_timer.hpp | 302 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/bind_executor.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffer.hpp | 495 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_read_stream.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_read_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_stream.hpp | 61 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_write_stream.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_write_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffers_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/co_spawn.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/completion_condition.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/compose.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/connect.hpp | 220 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/coroutine.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/deadline_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/defer.hpp | 38 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detached.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/array.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/array_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/assert.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/atomic_count.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/base_from_completion_cond.hpp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/bind_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffer_resize_guard.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffer_sequence_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffered_stream_storage.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/call_stack.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/chrono.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/chrono_time_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/completion_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/concurrency_hint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/config.hpp | 239 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/consuming_buffers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/cstddef.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/cstdint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/date_time_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/deadline_timer_service.hpp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/dependent_type.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_ops.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_read_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_write_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/dev_poll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/epoll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/eventfd_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/executor_function.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/executor_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/functional.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/future.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_arm_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_hppa_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_sync_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_x86_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_alloc_helpers.hpp | 19 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_cont_helpers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_invoke_helpers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_tracking.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_type_requirements.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_work.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/hash_map.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/buffer_sequence_adapter.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/descriptor_ops.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/eventfd_select_interrupter.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/handler_tracking.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/null_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/pipe_select_interrupter.ipp | 17 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_thread.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_tss_ptr.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_descriptor_service.ipp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_serial_port_service.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_socket_service_base.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/resolver_service_base.ipp | 70 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/scheduler.ipp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.ipp | 11 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/signal_set_service.ipp | 42 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/socket_ops.ipp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/socket_select_interrupter.ipp | 21 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/throw_error.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_ptime.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_set.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_handle_service.ipp | 12 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.ipp | 44 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_serial_port_service.ipp | 23 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_socket_service_base.ipp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_object_handle_service.ipp | 35 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_static_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_thread.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_tss_ptr.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_ssocket_service_base.ipp | 39 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.ipp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winsock_init.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_control.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_object_executor.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_object_impl.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/is_buffer_sequence.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/is_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/keyword_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/kqueue_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/local_free_on_block_exit.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/macos_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/memory.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/non_const_lvalue.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/noncopyable.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_socket_service.hpp | 115 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/object_pool.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/old_win_sdk_compat.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/op_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/pipe_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/pop_options.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_event.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/push_options.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_descriptor_service.hpp | 55 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_null_buffers_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_serial_port_service.hpp | 24 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_accept_op.hpp | 51 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_connect_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recv_op.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvfrom_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvmsg_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_send_op.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_sendto_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service.hpp | 117 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service_base.hpp | 85 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_wait_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_op_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/recycling_allocator.hpp | 30 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/regex_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_endpoint_op.hpp | 38 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_query_op.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolver_service.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolver_service_base.hpp | 41 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler_operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler_thread_info.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scoped_lock.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scoped_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/select_interrupter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/select_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/service_registry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_handler.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_set_service.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_holder.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_ops.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_option.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_types.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/solaris_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/strand_executor_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/strand_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/string_view.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_group.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_info_base.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/throw_error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/throw_exception.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_ptime.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_set.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_scheduler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_scheduler_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/type_traits.hpp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/variadic_templates.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wait_handler.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wait_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_global.hpp | 13 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_read_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_service.hpp | 72 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_write_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_io_context.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_null_buffers_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_ptr.hpp | 42 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_serial_port_service.hpp | 24 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_accept_op.hpp | 43 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_connect_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recv_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvfrom_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvmsg_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_send_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service.hpp | 134 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service_base.hpp | 103 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_thread_info.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_wait_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_object_handle_service.hpp | 35 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winapp_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wince_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_async_manager.hpp | 39 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_async_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_resolve_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_resolver_service.hpp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_connect_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_recv_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_send_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service_base.hpp | 69 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_timer_scheduler.hpp | 26 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_utils.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winsock_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/work_dispatcher.hpp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wrapped_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/dispatch.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/error_code.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/execution_context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/executor_work_guard.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/basic_endpoint.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/datagram_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/detail/endpoint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/detail/impl/endpoint.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/raw_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/seq_packet_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/stream_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_alloc_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_continuation_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_invoke_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/high_resolution_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/buffered_read_stream.hpp | 158 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/buffered_write_stream.hpp | 148 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/co_spawn.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/compose.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/connect.hpp | 486 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/defer.hpp | 90 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/detached.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/dispatch.hpp | 91 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/error.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/error_code.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/execution_context.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/execution_context.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/executor.hpp | 31 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/executor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/handler_alloc_hook.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/io_context.hpp | 134 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/io_context.ipp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/post.hpp | 90 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read.hpp | 662 ++ AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read_at.hpp | 211 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read_until.hpp | 2258 ++++++++-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/redirect_error.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/serial_port_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/serial_port_base.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/spawn.hpp | 47 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/src.cpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/src.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_context.ipp | 11 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/thread_pool.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/thread_pool.ipp | 21 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/use_awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/use_future.hpp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/write.hpp | 613 ++ AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/write_at.hpp | 212 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_context.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_context_strand.hpp | 96 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_service_strand.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address.hpp | 62 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4.hpp | 58 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4_range.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6.hpp | 77 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6_range.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/bad_address_cast.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_endpoint.hpp | 47 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver.hpp | 394 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_entry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_query.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_results.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/endpoint.hpp | 40 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/impl/endpoint.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/socket_option.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/host_name.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/icmp.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address.ipp | 41 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.ipp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.ipp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/basic_endpoint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/host_name.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/multicast.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/network_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/network_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/resolver_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/resolver_query_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/tcp.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/udp.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/unicast.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/v6_only.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_read_buffered.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_write_buffered.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/basic_endpoint.hpp | 12 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/connect_pair.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/datagram_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/detail/endpoint.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/detail/impl/endpoint.ipp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/stream_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/packaged_task.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/placeholders.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/basic_descriptor.hpp | 263 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/basic_stream_descriptor.hpp | 252 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/descriptor.hpp | 617 -- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/descriptor_base.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/stream_descriptor.hpp | 329 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/post.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read.hpp | 457 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read_at.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read_until.hpp | 1209 ++++- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/redirect_error.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/serial_port.hpp | 739 --- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/serial_port_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/signal_set.hpp | 425 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/socket_base.hpp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/spawn.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/context_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/buffered_handshake_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/engine.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/handshake_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/impl/engine.ipp | 28 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/impl/openssl_init.ipp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/io.hpp | 17 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_types.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/password_callback.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/read_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/shutdown_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/stream_core.hpp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/verify_callback.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/write_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/error.hpp | 28 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/host_name_verification.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/context.ipp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/error.ipp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/host_name_verification.ipp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/rfc2818_verification.ipp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/src.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/rfc2818_verification.hpp | 10 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/stream.hpp | 319 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/stream_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/verify_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/verify_mode.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/steady_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/strand.hpp | 40 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/streambuf.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/this_coro.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/thread_pool.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/time_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/buffer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/executor.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/internet.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/io_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/net.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/netfwd.hpp | 74 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/socket.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/unyield.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/use_awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/use_future.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/uses_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/version.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/wait_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_object_handle.hpp | 337 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_overlapped_handle.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_random_access_handle.hpp | 258 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_stream_handle.hpp | 261 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/object_handle.hpp | 349 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/overlapped_handle.hpp | 300 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/overlapped_ptr.hpp | 45 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/random_access_handle.hpp | 347 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/stream_handle.hpp | 331 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/write.hpp | 428 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/write_at.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/yield.hpp | 2 502 files changed, 15541 insertions(+), 10399 deletions(-)
Title: Zipf Extended Distributions
Description: Implementation of four extensions of the Zipf distribution: the Marshall-Olkin
Extended Zipf (MOEZipf) Pérez-Casany, M., & Casellas, A. (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Zipf-Poisson Stopped Sum (Zipf-PSS) and the Zipf-Polylog distributions.
In log-log scale, the two first extensions allow for top-concavity
and top-convexity while the third one only allows for top-concavity.
All the extensions maintain the linearity associated with the Zipf model in the tail.
Author: Ariel Duarte-López [aut, cre] (<https://orcid.org/0000-0002-7432-0344>),
Marta Pérez-Casany [aut] (<https://orcid.org/0000-0003-3675-6902>)
Maintainer: Ariel Duarte-López <aduarte@ac.upc.edu>
Diff between zipfextR versions 1.0.1 dated 2019-09-18 and 1.0.2 dated 2020-07-07
DESCRIPTION | 6 +- MD5 | 16 ++++- NAMESPACE | 6 ++ R/zipfPolylog.R | 125 ++++++++++++++++++++++++++++++++++++++++++++-- R/zipfpe.R | 5 + R/zipfpolylogMean.R |only R/zipfpolylogMoments.R |only R/zipfpoylogVariance.R |only man/zipfPolylog.Rd | 24 +++++++- man/zipfpolylogMean.Rd |only man/zipfpolylogMoments.Rd |only man/zipfpoylogVariance.Rd |only 12 files changed, 168 insertions(+), 14 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Provides 'ggplot2' and 'leaflet' wrapper functions designed to simplify the creation of high quality graph and map visualisations. These functions only require inputs of data, variables and titles to provide beautiful interactive or image visualisations. However they allow for more flexibility if required. The intent is that high quality well-designed graphs and maps can be made more consistently with less effort, code and expertise than would otherwise be required.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 1.4.0 dated 2020-06-22 and 1.5.0 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 120 ++++++++---- NEWS.md | 75 ++++---- R/ggplot_box_fun.R | 83 +++++--- R/ggplot_hbar_fun.R | 236 +++++++++++++++++++------ R/ggplot_line_fun.R | 141 ++++++++++++--- R/ggplot_scatter_fun.R | 135 +++++++++++++- R/ggplot_vbar_fun.R | 300 +++++++++++++++++++++++--------- R/leaflet_sf_fun.R | 13 - R/leaflet_stars_fun.R | 2 inst/doc/simplevis.html | 4 inst/shiny/template1/data/data.RDS |only inst/shiny/template1/data/data.zip |only inst/shiny/template1/data/template1.zip |binary inst/shiny/template1/get_app_data.R |only inst/shiny/template1/global.R | 10 - inst/shiny/template1/make_app_vis.R | 24 +- inst/shiny/template1/server.R | 74 +++---- inst/shiny/template1/ui.R | 7 inst/shiny/template1/www/about.Rmd | 4 inst/shiny/template2/data/data.zip |only inst/shiny/template2/data/data1.RDS |only inst/shiny/template2/data/data2.RDS |only inst/shiny/template2/data/template2.zip |binary inst/shiny/template2/get_app_data.R |only inst/shiny/template2/global.R | 17 - inst/shiny/template2/make_app_vis.R | 44 ++-- inst/shiny/template2/server.R | 85 ++++----- inst/shiny/template2/ui.R | 14 - inst/shiny/template2/www/about.Rmd | 4 inst/shiny/zip |only man/ggplot_box.Rd | 7 man/ggplot_box_facet.Rd | 7 man/ggplot_hbar.Rd | 23 +- man/ggplot_hbar_col.Rd | 13 - man/ggplot_hbar_col_facet.Rd | 13 - man/ggplot_hbar_facet.Rd | 23 +- man/ggplot_line.Rd | 17 + man/ggplot_line_col.Rd | 26 +- man/ggplot_line_col_facet.Rd | 15 + man/ggplot_line_facet.Rd | 15 + man/ggplot_scatter.Rd | 9 man/ggplot_scatter_col.Rd | 9 man/ggplot_scatter_col_facet.Rd | 9 man/ggplot_scatter_facet.Rd | 9 man/ggplot_vbar.Rd | 19 +- man/ggplot_vbar_col.Rd | 24 +- man/ggplot_vbar_col_facet.Rd | 25 +- man/ggplot_vbar_facet.Rd | 21 +- man/leaflet_sf.Rd | 2 man/leaflet_sf_col.Rd | 13 - man/leaflet_stars_col.Rd | 2 52 files changed, 1158 insertions(+), 545 deletions(-)
Title: Results for Forest Inventories
Description: The functions return sampling parameters for forest inventories with tables and graphics. Methods used in the
package refers to Pellico e Brena (1997) <https://bit.ly/2BDbHJI>.
Author: Igor Cobelo Ferreira
Maintainer: Igor Cobelo Ferreira <cobelo.igor@gmail.com>
Diff between florestal versions 0.1.0 dated 2020-07-06 and 0.1.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/ace.R | 14 +++++++------- man/ace.Rd | 4 ++-- man/acs.Rd | 4 ++-- man/bit.Rd | 4 ++-- man/fito.Rd | 4 ++-- 7 files changed, 24 insertions(+), 24 deletions(-)
Title: Solvers for Boundary Value Problems of Differential Equations
Description: Functions that solve boundary value problems ('BVP') of systems of ordinary
differential equations ('ODE') and differential algebraic equations ('DAE').
The functions provide an interface to the FORTRAN functions
'twpbvpC', 'colnew/colsys', and an R-implementation of the shooting method.
'Mazzia, F., J.R. Cash and K. Soetaert, 2014. <DOI:10.7494/OpMath.2014.34.2.387>.
Author: Karline Soetaert [aut, cre] (<https://orcid.org/0000-0003-4603-7100>),
Jeff Cash [aut],
Francesca Mazzia [aut],
Uri M. Ascher [ctb] (files colsysR.f, colnewR.f, coldaeR.f),
G. Bader [ctb] (file colnewR.f),
J. Christiansen [ctb] (file colsysR.f),
Robert R. Russell [ctb] (file colsysR.f)
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between bvpSolve versions 1.4 dated 2020-05-26 and 1.4.1 dated 2020-07-07
DESCRIPTION | 23 +++++----- MD5 | 14 +++--- inst/doc/bvpSolve.pdf |binary inst/doc/bvpTests.pdf |binary inst/doc/opuscula_math_3424.pdf |binary src/R_init_bvpSolve.c | 4 - src/bvpSolve.h | 89 +++++++++++++++++++++------------------- src/bvpSolve_utils.c | 2 8 files changed, 70 insertions(+), 62 deletions(-)
Title: Visual Regression Testing and Graphical Diffing
Description: An extension to the 'testthat' package that makes it easy
to add graphical unit tests. It provides a Shiny application to
manage the test cases.
Author: Lionel Henry [cre, aut],
RStudio [cph],
Carl Sutherland [aut] (jg-imagediff library),
Humble Software [cph] (jg-imagediff library),
David Hong [aut] (TwoFace library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery-authors.txt),
T Jake Luciani [aut] (svglite),
Matthieu Decorde [aut] (svglite),
Vaudor Lise [aut] (svglite),
Tony Plate [ctb] (svglite: Early line dashing code),
David Gohel [ctb] (svglite: Line dashing code and raster code),
Yixuan Qiu [ctb] (svglite: Improved styles; polypath implementation),
Håkon Malmedal [ctb] (svglite: Opacity code)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between vdiffr versions 0.3.2.1 dated 2020-06-28 and 0.3.2.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: An 'SVG' Graphics Device
Description: A graphics device for R that produces 'Scalable Vector Graphics'.
'svglite' is a fork of the older 'RSvgDevice' package.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
T Jake Luciani [aut],
Matthieu Decorde [aut],
Vaudor Lise [aut],
Tony Plate [ctb] (Early line dashing code),
David Gohel [ctb] (Line dashing code and raster code),
Yixuan Qiu [ctb] (Improved styles; polypath implementation),
Håkon Malmedal [ctb] (Opacity code),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between svglite versions 1.2.3.1 dated 2020-06-28 and 1.2.3.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Embeddable Cairo Graphics Device Driver
Description: This device uses Cairo and GTK to draw to the screen,
file (png, svg, pdf, and ps) or memory (arbitrary GdkDrawable
or Cairo context). The screen device may be embedded into RGtk2
interfaces and supports all interactive features of other graphics
devices, including getGraphicsEvent().
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between cairoDevice versions 2.28.1 dated 2020-06-28 and 2.28.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: R Graphics Device using Cairo Graphics Library for Creating
High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG,
PostScript) and Display (X11 and Win32) Output
Description: R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Jeffrey Horner <jeff.horner@vanderbilt.edu>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Cairo versions 1.5-12.1 dated 2020-06-28 and 1.5-12.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/cairogd.c | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Japanese Utility Functions and Data
Description: Some data treated by the Japanese R user require
unique operations and processing. These are caused by address, Kanji,
and traditional year representations. 'zipangu' transforms specific
to Japan into something more general one.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>),
Hiroaki Yutani [ctb] (<https://orcid.org/0000-0002-3385-7233>),
Kazuhiro Maeda [ctb]
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between zipangu versions 0.2.0 dated 2020-01-10 and 0.2.1 dated 2020-07-07
zipangu-0.2.0/zipangu/man/is_japanpost_zippath.Rd |only zipangu-0.2.1/zipangu/DESCRIPTION | 32 +- zipangu-0.2.1/zipangu/MD5 | 32 +- zipangu-0.2.1/zipangu/NAMESPACE | 1 zipangu-0.2.1/zipangu/NEWS.md | 12 zipangu-0.2.1/zipangu/R/address.R | 126 +++++----- zipangu-0.2.1/zipangu/R/convert-jyear.R | 15 + zipangu-0.2.1/zipangu/R/jholiday.R | 234 +++++++++---------- zipangu-0.2.1/zipangu/R/zipcode.R | 1 zipangu-0.2.1/zipangu/README.md | 26 +- zipangu-0.2.1/zipangu/build/zipangu.pdf |binary zipangu-0.2.1/zipangu/data/jpnprefs.rda |binary zipangu-0.2.1/zipangu/man/convert_jdate.Rd |only zipangu-0.2.1/zipangu/man/is_jholiday.Rd | 2 zipangu-0.2.1/zipangu/man/jpnprefs.Rd | 6 zipangu-0.2.1/zipangu/tests/testthat/test-address.R | 25 ++ zipangu-0.2.1/zipangu/tests/testthat/test-jholiday.R | 71 ++++- zipangu-0.2.1/zipangu/tests/testthat/test-jyear.R | 7 18 files changed, 371 insertions(+), 219 deletions(-)
Title: Interactive, Complex Heatmaps
Description: Make complex, interactive heatmaps. 'iheatmapr' includes a modular
system for iteratively building up complex heatmaps, as well as the
iheatmap() function for making relatively standard heatmaps.
Author: Alicia Schep [aut, cre] (<https://orcid.org/0000-0002-3915-0618>),
Sarah Kummerfeld [aut] (<https://orcid.org/0000-0002-0089-2358>),
Genentech [cph],
Andee Kaplan [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Carl Ganz [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Alex Johnson [ctb] (plotly.js library),
Étienne Tétreault-Pinard [ctb] (plotly.js library),
Mikola Lysenko [ctb] (plotly.js library),
Ricky Reusser [ctb] (plotly.js library),
Robert Monfera [ctb] (plotly.js library),
Nicolas Riesco [ctb] (plotly.js library),
Miklós Tusz [ctb] (plotly.js library),
Chelsea Douglas [ctb] (plotly.js library),
Ben Postlethwaite [ctb] (plotly.js library),
Chris Parmer [ctb] (plotly.js library),
Alex Vados [ctb] (plotly.js library),
Plotly [cph] (plotly.js library),
Frederick Boehm [ctb] (colorbars & main_heatmap)
Maintainer: Alicia Schep <aschep@gmail.com>
Diff between iheatmapr versions 0.4.12 dated 2019-11-23 and 0.5.0 dated 2020-07-07
DESCRIPTION | 20 MD5 | 250 +++++----- NAMESPACE | 3 NEWS.md | 5 R/AllClasses.R | 18 R/axes.R | 17 R/colorbars.R | 11 R/generic_subplots.R | 12 R/iheatmapr.R | 2 R/list_utils.R |only R/main_heatmap.R | 12 R/signal.R | 16 R/utils.R | 5 build/vignette.rds |binary inst/doc/iheatmapr-minimal.html | 15 man/access_component.Rd | 3 man/add_col_annotation.Rd | 15 man/add_col_barplot.Rd | 21 man/add_col_clustering.Rd | 18 man/add_col_clusters.Rd | 13 man/add_col_dendro.Rd | 15 man/add_col_groups.Rd | 25 - man/add_col_labels.Rd | 17 man/add_col_plot.Rd | 23 man/add_col_signal.Rd | 27 - man/add_col_summary.Rd | 25 - man/add_col_title.Rd | 15 man/add_iheatmap.Rd | 71 ++ man/add_main_heatmap.Rd | 59 +- man/add_row_annotation.Rd | 15 man/add_row_barplot.Rd | 21 man/add_row_clustering.Rd | 18 man/add_row_clusters.Rd | 13 man/add_row_dendro.Rd | 15 man/add_row_groups.Rd | 25 - man/add_row_labels.Rd | 17 man/add_row_plot.Rd | 23 man/add_row_signal.Rd | 27 - man/add_row_summary.Rd | 25 - man/add_row_title.Rd | 16 man/add_subplot.Rd | 13 man/iheatmap.Rd | 48 + man/iheatmap_list_utils.Rd |only man/iheatmapr.Rd | 5 man/iheatmapr_event.Rd | 7 man/main_heatmap.Rd | 35 - man/modify_layout.Rd | 1 man/reexports.Rd | 2 man/reorder_cols.Rd | 4 man/reorder_rows.Rd | 4 man/save_iheatmap.Rd | 1 man/setup_colorbar_grid.Rd | 11 man/setup_tooltip_options.Rd | 13 man/to_widget.Rd | 1 tests/testthat/reference/col_barplot_horizontal.rds |binary tests/testthat/reference/col_barplot_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_vertical.rds |binary tests/testthat/reference/col_clustering_kmeans_horizontal.rds |binary tests/testthat/reference/col_clustering_kmeans_vertical.rds |binary tests/testthat/reference/col_dendro_horizontal.rds |binary tests/testthat/reference/col_dendro_vertical.rds |binary tests/testthat/reference/col_groups_horizontal.rds |binary tests/testthat/reference/col_groups_vertical.rds |binary tests/testthat/reference/col_labels_continuous_horizontal.rds |binary tests/testthat/reference/col_labels_continuous_vertical.rds |binary tests/testthat/reference/col_labels_horizontal.rds |binary tests/testthat/reference/col_labels_vertical.rds |binary tests/testthat/reference/col_plot_horizontal.rds |binary tests/testthat/reference/col_plot_vertical.rds |binary tests/testthat/reference/col_scatter_plot_horizontal.rds |binary tests/testthat/reference/col_scatter_plot_vertical.rds |binary tests/testthat/reference/col_signal_horizontal.rds |binary tests/testthat/reference/col_signal_vertical.rds |binary tests/testthat/reference/col_summary_groups_horizontal.rds |binary tests/testthat/reference/col_summary_groups_vertical.rds |binary tests/testthat/reference/col_summary_horizontal.rds |binary tests/testthat/reference/col_summary_vertical.rds |binary tests/testthat/reference/col_title_horizontal.rds |binary tests/testthat/reference/col_title_vertical.rds |binary tests/testthat/reference/complex_example_horizontal.rds |binary tests/testthat/reference/complex_example_vertical.rds |binary tests/testthat/reference/main_heatmap.rds |binary tests/testthat/reference/main_heatmap_vertical.rds |binary tests/testthat/reference/row_barplot_horizontal.rds |binary tests/testthat/reference/row_barplot_vertical.rds |binary tests/testthat/reference/row_clustering_hclust_horizontal.rds |binary tests/testthat/reference/row_clustering_hclust_k_horizontal.rds |binary tests/testthat/reference/row_clustering_k_vertical.rds |binary tests/testthat/reference/row_clustering_kmeans_horizontal.rds |binary tests/testthat/reference/row_clustering_kmeans_vertical.rds |binary tests/testthat/reference/row_clustering_vertical.rds |binary tests/testthat/reference/row_dendro_horizontal.rds |binary tests/testthat/reference/row_dendro_vertical.rds |binary tests/testthat/reference/row_groups_horizontal.rds |binary tests/testthat/reference/row_groups_vertical.rds |binary tests/testthat/reference/row_labels_continuous_horizontal.rds |binary tests/testthat/reference/row_labels_continuous_vertical.rds |binary tests/testthat/reference/row_labels_custom_ticktext1_horizontal.rds |binary tests/testthat/reference/row_labels_custom_ticktext2_horizontal.rds |binary tests/testthat/reference/row_labels_custom_ticktext_tickvals_horizontal.rds |binary tests/testthat/reference/row_labels_custom_tickvals_horizontal.rds |binary tests/testthat/reference/row_labels_horizontal.rds |binary tests/testthat/reference/row_labels_vertical.rds |binary tests/testthat/reference/row_plot_horizontal.rds |binary tests/testthat/reference/row_plot_vertical.rds |binary tests/testthat/reference/row_scatter_plot_horizontal.rds |binary tests/testthat/reference/row_scatter_plot_vertical.rds |binary tests/testthat/reference/row_signal_horizontal.rds |binary tests/testthat/reference/row_signal_vertical.rds |binary tests/testthat/reference/row_summary_groups_horizontal.rds |binary tests/testthat/reference/row_summary_groups_vertical.rds |binary tests/testthat/reference/row_summary_horizontal.rds |binary tests/testthat/reference/row_summary_vertical.rds |binary tests/testthat/reference/row_title_horizontal.rds |binary tests/testthat/reference/row_title_vertical.rds |binary tests/testthat/reference/shared_axes_gap_bottom_horizontal.rds |binary tests/testthat/reference/shared_axes_gap_left_vertical.rds |binary tests/testthat/reference/shared_axes_gap_right_vertical.rds |binary tests/testthat/reference/shared_axes_gap_top_horizontal.rds |binary tests/testthat/reference/single_col_main_heatmap_horizontal.rds |only tests/testthat/reference/single_row_main_heatmap_horizontal.rds |only tests/testthat/reference/two_main_heatmap_horizontal.rds |binary tests/testthat/reference/two_main_heatmap_vertical.rds |binary tests/testthat/test_list_utils.R |only tests/testthat/test_main_heatmap.R | 10 tests/view_reference.html |only 129 files changed, 703 insertions(+), 400 deletions(-)
Title: Excess Certainty Adjusted Probability Estimate
Description: Implements the Excess Certainty Adjusted Probability adjustment procedure as described in the paper "Irrational Exuberance: Correcting Bias in Probability Estimates" by Gareth James, Peter Radchenko, and Bradley Rava (Journal of the American Statistical Association, 2020; <arXiv:1910.13570>). The package includes a function that preforms the ECAP adjustment and a function that estimates the parameters needed for implementing ECAP. For testing and reproducibility, the ESPN and FiveThirtyEight data used in the paper are also included.
Author: Bradley Rava, Peter Radchenko, and Gareth M. James
Maintainer: Bradley Rava <brava@marshall.usc.edu>
Diff between ecap versions 0.1.0 dated 2020-06-29 and 0.1.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 +++++- R/ecap.R | 6 +++++- man/ecap.Rd | 2 +- 5 files changed, 18 insertions(+), 10 deletions(-)