Title: Forensic Glass Transfer Probabilities
Description: Statistical interpretation of forensic glass transfer (Simulation of the probability distribution of recovered glass fragments).
Author: James Curran and TingYu Huang
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between tfer versions 1.1 dated 2010-11-08 and 1.2 dated 2020-07-09
tfer-1.1/tfer/R/tfer-class.R |only tfer-1.1/tfer/R/tfer-methods.R |only tfer-1.1/tfer/R/tfer-parameters-method.R |only tfer-1.1/tfer/R/tfer-plot-method.R |only tfer-1.1/tfer/R/tfer-tprob-methods.R |only tfer-1.1/tfer/man/Compare-methods.Rd |only tfer-1.1/tfer/man/para.Rd |only tfer-1.1/tfer/man/parameters-methods.Rd |only tfer-1.1/tfer/man/parameters.Rd |only tfer-1.1/tfer/man/plot-methods.Rd |only tfer-1.1/tfer/man/show-methods.Rd |only tfer-1.1/tfer/man/summary-methods.Rd |only tfer-1.1/tfer/man/tfer-package.Rd |only tfer-1.1/tfer/man/tprob-methods.Rd |only tfer-1.1/tfer/man/transfer-class.Rd |only tfer-1.1/tfer/man/values.Rd |only tfer-1.1/tfer/man/z[-methods.Rd |only tfer-1.2/tfer/DESCRIPTION | 18 +- tfer-1.2/tfer/MD5 |only tfer-1.2/tfer/NAMESPACE |only tfer-1.2/tfer/R/getParams.R |only tfer-1.2/tfer/R/getValues.R |only tfer-1.2/tfer/R/plot.transfer.R |only tfer-1.2/tfer/R/print.transfer.R |only tfer-1.2/tfer/R/subset.transfer.R |only tfer-1.2/tfer/R/summary.transfer.R |only tfer-1.2/tfer/R/tferR-package.R |only tfer-1.2/tfer/R/tprob.R |only tfer-1.2/tfer/R/transfer.R |only tfer-1.2/tfer/man/getParams.Rd |only tfer-1.2/tfer/man/getValues.Rd |only tfer-1.2/tfer/man/plot.tfer.Rd |only tfer-1.2/tfer/man/print.transfer.Rd |only tfer-1.2/tfer/man/summary.transfer.Rd |only tfer-1.2/tfer/man/tprob.Rd | 71 ++++---- tfer-1.2/tfer/man/transfer.Rd | 246 ++++++++++++++++--------------- 36 files changed, 173 insertions(+), 162 deletions(-)
Title: Spatio-Temporal Under-Five Mortality Methods for Estimation
Description: Provides methods for spatial and spatio-temporal smoothing of demographic and health indicators using survey data, with particular focus on estimating and projecting under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>
and Li et al. (2019) <doi:10.1371/journal.pone.0210645>.
Author: Zehang R Li [cre, aut],
Bryan D Martin [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
Jon Wakefield [aut],
Samuel J Clark [aut],
Geir-Arne Fuglstad [aut],
Andrea Riebler [aut]
Maintainer: Zehang R Li <lizehang@gmail.com>
Diff between SUMMER versions 0.3.0 dated 2019-10-23 and 1.0.0 dated 2020-07-09
SUMMER-0.3.0/SUMMER/R/read_shape.R |only SUMMER-0.3.0/SUMMER/man/fitGeneric.Rd |only SUMMER-0.3.0/SUMMER/man/fitINLA.Rd |only SUMMER-0.3.0/SUMMER/man/fitINLA2.Rd |only SUMMER-0.3.0/SUMMER/man/read_shape.Rd |only SUMMER-1.0.0/SUMMER/DESCRIPTION | 28 SUMMER-1.0.0/SUMMER/MD5 | 137 +- SUMMER-1.0.0/SUMMER/NAMESPACE | 16 SUMMER-1.0.0/SUMMER/NEWS.md | 22 SUMMER-1.0.0/SUMMER/R/ChangeRegion.R | 3 SUMMER-1.0.0/SUMMER/R/DemoData.R | 4 SUMMER-1.0.0/SUMMER/R/DemoData2.R | 2 SUMMER-1.0.0/SUMMER/R/DemoMap.R | 2 SUMMER-1.0.0/SUMMER/R/DemoMap2.R | 8 SUMMER-1.0.0/SUMMER/R/Kendata.R | 4 SUMMER-1.0.0/SUMMER/R/MalawiData.R |only SUMMER-1.0.0/SUMMER/R/MalawiMap.R |only SUMMER-1.0.0/SUMMER/R/SUMMER.R | 6 SUMMER-1.0.0/SUMMER/R/aggregateSurvey.R | 5 SUMMER-1.0.0/SUMMER/R/countrySummary.R | 13 SUMMER-1.0.0/SUMMER/R/countrySummary_mult.R | 3 SUMMER-1.0.0/SUMMER/R/fitINLA.R | 669 +++++++++---- SUMMER-1.0.0/SUMMER/R/fitINLA2.R | 857 +++++++++++++---- SUMMER-1.0.0/SUMMER/R/fitspace.R | 265 +++-- SUMMER-1.0.0/SUMMER/R/getAdjusted.R | 1 SUMMER-1.0.0/SUMMER/R/getAmat.R | 1 SUMMER-1.0.0/SUMMER/R/getBirths.R | 25 SUMMER-1.0.0/SUMMER/R/getCounts.R | 6 SUMMER-1.0.0/SUMMER/R/getDiag.R | 173 ++- SUMMER-1.0.0/SUMMER/R/getSmoothedDensity.R |only SUMMER-1.0.0/SUMMER/R/hatchPlot.R | 44 SUMMER-1.0.0/SUMMER/R/mapPlot.R | 89 + SUMMER-1.0.0/SUMMER/R/mapPoints.R | 1 SUMMER-1.0.0/SUMMER/R/plot_projINLA.R | 72 - SUMMER-1.0.0/SUMMER/R/projINLA.R | 581 ++++++++--- SUMMER-1.0.0/SUMMER/R/simRandom.R | 7 SUMMER-1.0.0/SUMMER/R/simhyper.R | 3 SUMMER-1.0.0/SUMMER/R/tcpPlot.R |only SUMMER-1.0.0/SUMMER/R/zzz.R |only SUMMER-1.0.0/SUMMER/README.md | 100 + SUMMER-1.0.0/SUMMER/build/vignette.rds |binary SUMMER-1.0.0/SUMMER/data/KingCounty.rda |binary SUMMER-1.0.0/SUMMER/data/MalawiData.rda |only SUMMER-1.0.0/SUMMER/data/MalawiMap.rda |only SUMMER-1.0.0/SUMMER/data/datalist | 2 SUMMER-1.0.0/SUMMER/inst/doc/summer-vignette.html | 310 +++--- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette.html | 432 +++----- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette2.html | 248 ++-- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette2.html.asis | 2 SUMMER-1.0.0/SUMMER/man/ChangeRegion.Rd | 7 SUMMER-1.0.0/SUMMER/man/DemoData.Rd | 4 SUMMER-1.0.0/SUMMER/man/DemoData2.Rd | 2 SUMMER-1.0.0/SUMMER/man/DemoMap.Rd | 2 SUMMER-1.0.0/SUMMER/man/DemoMap2.Rd | 8 SUMMER-1.0.0/SUMMER/man/KenData.Rd | 4 SUMMER-1.0.0/SUMMER/man/MalawiData.Rd |only SUMMER-1.0.0/SUMMER/man/MalawiMap.Rd |only SUMMER-1.0.0/SUMMER/man/SUMMER-package.Rd | 6 SUMMER-1.0.0/SUMMER/man/aggregateSurvey.Rd | 3 SUMMER-1.0.0/SUMMER/man/getAdjusted.Rd | 3 SUMMER-1.0.0/SUMMER/man/getAmat.Rd | 3 SUMMER-1.0.0/SUMMER/man/getBirths.Rd | 20 SUMMER-1.0.0/SUMMER/man/getCounts.Rd | 8 SUMMER-1.0.0/SUMMER/man/getDiag.Rd | 30 SUMMER-1.0.0/SUMMER/man/getDirect.Rd | 8 SUMMER-1.0.0/SUMMER/man/getDirectList.Rd | 8 SUMMER-1.0.0/SUMMER/man/getSmoothed.Rd | 47 SUMMER-1.0.0/SUMMER/man/hatchPlot.Rd | 16 SUMMER-1.0.0/SUMMER/man/mapPlot.Rd | 29 SUMMER-1.0.0/SUMMER/man/mapPoints.Rd | 3 SUMMER-1.0.0/SUMMER/man/plot.SUMMERproj.Rd | 23 SUMMER-1.0.0/SUMMER/man/ridgePlot.Rd |only SUMMER-1.0.0/SUMMER/man/rst.Rd | 7 SUMMER-1.0.0/SUMMER/man/simhyper.Rd | 7 SUMMER-1.0.0/SUMMER/man/smoothCluster.Rd |only SUMMER-1.0.0/SUMMER/man/smoothDirect.Rd |only SUMMER-1.0.0/SUMMER/man/smoothSurvey.Rd |only SUMMER-1.0.0/SUMMER/man/tcpPlot.Rd |only SUMMER-1.0.0/SUMMER/vignettes/u5mr-vignette2.html.asis | 2 79 files changed, 2908 insertions(+), 1483 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are
cumulative probability distributions which are fitted to
toxicity concentrations for different species as described by
Posthuma et al.(2001) <isbn:9781566705783>.
The ssdtools package uses Maximum Likelihood to fit distributions
such as the log-normal, gamma, log-logistic,
log-Gumbel, Gompertz and Weibull.
The user can provide custom distributions.
Multiple distributions can be averaged using Information Criteria.
Confidence intervals on hazard concentrations and proportions are produced by
parametric bootstrapping.
Author: Joe Thorley [aut, cre, ctr] (<https://orcid.org/0000-0002-7683-4592>),
Carl Schwarz [aut, ctr],
Angeline Tillmanns [ctb],
Ali Azizishirazi [ctb],
Rebecca Fisher [ctb],
David Fox [ctb],
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Andy Teucher [ctb],
Emilie Doussantousse [ctb],
Stephanie Hazlitt [ctb],
Nan-Hung Hsieh [ctb],
Sergio Ibarra Espinosa [ctb],
Province of British Columbia [cph]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 0.2.0 dated 2020-04-15 and 0.3.0 dated 2020-07-09
ssdtools-0.2.0/ssdtools/R/burrIII3.R |only ssdtools-0.2.0/ssdtools/R/deprecated.R |only ssdtools-0.2.0/ssdtools/tests/testthat/test-aaa-deprecated.R |only ssdtools-0.2.0/ssdtools/tests/testthat/test-burrrIII3.R |only ssdtools-0.3.0/ssdtools/DESCRIPTION | 19 ssdtools-0.3.0/ssdtools/MD5 | 200 +++++----- ssdtools-0.3.0/ssdtools/NAMESPACE | 7 ssdtools-0.3.0/ssdtools/NEWS.md | 25 + ssdtools-0.3.0/ssdtools/R/RcppExports.R |only ssdtools-0.3.0/ssdtools/R/burrIII2.R | 90 +--- ssdtools-0.3.0/ssdtools/R/burrrIII3.R |only ssdtools-0.3.0/ssdtools/R/data.R | 96 ++-- ssdtools-0.3.0/ssdtools/R/dpqr.R |only ssdtools-0.3.0/ssdtools/R/fit.R | 18 ssdtools-0.3.0/ssdtools/R/gamma.R | 24 - ssdtools-0.3.0/ssdtools/R/ggplot.R | 2 ssdtools-0.3.0/ssdtools/R/ggproto.R | 2 ssdtools-0.3.0/ssdtools/R/gof.R | 4 ssdtools-0.3.0/ssdtools/R/gompertz.R | 40 -- ssdtools-0.3.0/ssdtools/R/hc.R | 10 ssdtools-0.3.0/ssdtools/R/lgumbel.R | 42 -- ssdtools-0.3.0/ssdtools/R/llog.R |only ssdtools-0.3.0/ssdtools/R/llogis.R | 42 -- ssdtools-0.3.0/ssdtools/R/lnorm.R |only ssdtools-0.3.0/ssdtools/R/match-moments.R | 2 ssdtools-0.3.0/ssdtools/R/namespace.R | 2 ssdtools-0.3.0/ssdtools/R/params.R | 6 ssdtools-0.3.0/ssdtools/R/pareto.R | 21 - ssdtools-0.3.0/ssdtools/R/plot-cf.R | 10 ssdtools-0.3.0/ssdtools/R/utils.R | 3 ssdtools-0.3.0/ssdtools/R/weibull.R | 17 ssdtools-0.3.0/ssdtools/R/zzz.R | 5 ssdtools-0.3.0/ssdtools/README.md | 21 - ssdtools-0.3.0/ssdtools/build/vignette.rds |binary ssdtools-0.3.0/ssdtools/data/boron_data.rda |binary ssdtools-0.3.0/ssdtools/data/boron_dists.rda |binary ssdtools-0.3.0/ssdtools/data/boron_hc5.rda |binary ssdtools-0.3.0/ssdtools/data/boron_lnorm.rda |binary ssdtools-0.3.0/ssdtools/data/boron_pred.rda |binary ssdtools-0.3.0/ssdtools/data/ccme_data.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_dists.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_lnorm.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_pred.rda |binary ssdtools-0.3.0/ssdtools/inst/WORDLIST |only ssdtools-0.3.0/ssdtools/inst/doc/distributions.R | 2 ssdtools-0.3.0/ssdtools/inst/doc/distributions.Rmd | 2 ssdtools-0.3.0/ssdtools/inst/doc/distributions.html | 48 +- ssdtools-0.3.0/ssdtools/inst/doc/exposure-plots.html | 52 +- ssdtools-0.3.0/ssdtools/inst/doc/faqs.Rmd | 9 ssdtools-0.3.0/ssdtools/inst/doc/faqs.html | 55 +- ssdtools-0.3.0/ssdtools/inst/doc/small-sample-bias-ref.html | 29 - ssdtools-0.3.0/ssdtools/inst/doc/ssdtools.Rmd | 10 ssdtools-0.3.0/ssdtools/inst/doc/ssdtools.html | 78 ++- ssdtools-0.3.0/ssdtools/man/boron_data.Rd | 19 ssdtools-0.3.0/ssdtools/man/boron_hc5.Rd | 22 - ssdtools-0.3.0/ssdtools/man/boron_pred.Rd | 20 - ssdtools-0.3.0/ssdtools/man/burrIII2.Rd | 38 - ssdtools-0.3.0/ssdtools/man/burrIII3.Rd | 33 - ssdtools-0.3.0/ssdtools/man/ccme_data.Rd | 31 - ssdtools-0.3.0/ssdtools/man/comma_signif.Rd | 2 ssdtools-0.3.0/ssdtools/man/figures/README-unnamed-chunk-10-1.png |binary ssdtools-0.3.0/ssdtools/man/figures/README-unnamed-chunk-5-1.png |binary ssdtools-0.3.0/ssdtools/man/fluazinam_dists.Rd | 2 ssdtools-0.3.0/ssdtools/man/fluazinam_lnorm.Rd | 2 ssdtools-0.3.0/ssdtools/man/fluazinam_pred.Rd | 20 - ssdtools-0.3.0/ssdtools/man/gamma.Rd | 7 ssdtools-0.3.0/ssdtools/man/geom_hcintersect.Rd | 2 ssdtools-0.3.0/ssdtools/man/geom_xribbon.Rd | 4 ssdtools-0.3.0/ssdtools/man/gompertz.Rd | 29 - ssdtools-0.3.0/ssdtools/man/lgumbel.Rd | 30 - ssdtools-0.3.0/ssdtools/man/llogis.Rd | 42 +- ssdtools-0.3.0/ssdtools/man/lnorm.Rd |only ssdtools-0.3.0/ssdtools/man/params.Rd | 10 ssdtools-0.3.0/ssdtools/man/pareto.Rd | 11 ssdtools-0.3.0/ssdtools/man/ssd_fit_dists.Rd | 14 ssdtools-0.3.0/ssdtools/man/ssd_gof.Rd | 20 - ssdtools-0.3.0/ssdtools/man/ssd_match_moments.Rd | 2 ssdtools-0.3.0/ssdtools/man/ssd_plot_cf.Rd | 12 ssdtools-0.3.0/ssdtools/man/ssdtools-ggproto.Rd | 2 ssdtools-0.3.0/ssdtools/man/ssdtools-package.Rd | 2 ssdtools-0.3.0/ssdtools/man/stat_ssd.Rd | 2 ssdtools-0.3.0/ssdtools/man/test_data.Rd | 12 ssdtools-0.3.0/ssdtools/man/weibull.Rd | 8 ssdtools-0.3.0/ssdtools/src |only ssdtools-0.3.0/ssdtools/tests/testthat/test-burrIII2.R | 180 ++++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-burrIII3.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-exposure.R | 12 ssdtools-0.3.0/ssdtools/tests/testthat/test-fit.R | 80 ++-- ssdtools-0.3.0/ssdtools/tests/testthat/test-gamma.R | 140 ++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-gof.R | 12 ssdtools-0.3.0/ssdtools/tests/testthat/test-gompertz.R | 164 +++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-hc.R | 104 ++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-hp.R | 130 ++---- ssdtools-0.3.0/ssdtools/tests/testthat/test-lgumbel.R | 160 ++++++-- ssdtools-0.3.0/ssdtools/tests/testthat/test-llog.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-llogis.R | 16 ssdtools-0.3.0/ssdtools/tests/testthat/test-lnorm.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-match-moments.R | 49 -- ssdtools-0.3.0/ssdtools/tests/testthat/test-pareto.R | 24 - ssdtools-0.3.0/ssdtools/tests/testthat/test-predict.R | 43 -- ssdtools-0.3.0/ssdtools/tests/testthat/test-schwarz-tillmans.R | 34 - ssdtools-0.3.0/ssdtools/tests/testthat/test-test-data.R | 26 - ssdtools-0.3.0/ssdtools/tests/testthat/test-weibull.R |only ssdtools-0.3.0/ssdtools/vignettes/distributions.Rmd | 2 ssdtools-0.3.0/ssdtools/vignettes/faqs.Rmd | 9 ssdtools-0.3.0/ssdtools/vignettes/ssdtools.Rmd | 10 106 files changed, 1409 insertions(+), 1177 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. <https://martin3141.github.io/spant/>.
Author: Martin Wilson [cre, aut],
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 1.6.0 dated 2020-06-05 and 1.7.0 dated 2020-07-09
spant-1.6.0/spant/man/write_mrs_dpt_v2.Rd |only spant-1.6.0/spant/man/write_mrs_lcm_raw.Rd |only spant-1.6.0/spant/man/write_mrs_rds.Rd |only spant-1.7.0/spant/DESCRIPTION | 12 - spant-1.7.0/spant/MD5 | 44 ++-- spant-1.7.0/spant/NAMESPACE | 7 spant-1.7.0/spant/NEWS.md | 10 + spant-1.7.0/spant/R/mrs_data_io.R | 132 +++++++------ spant-1.7.0/spant/R/mrs_data_proc.R | 22 +- spant-1.7.0/spant/R/mrs_read_nifti.R |only spant-1.7.0/spant/R/mrs_write_nifti.R |only spant-1.7.0/spant/R/spant.R | 8 spant-1.7.0/spant/R/utils.R | 12 - spant-1.7.0/spant/build/vignette.rds |binary spant-1.7.0/spant/inst/doc/abfit-baseline-opts.html | 90 +++++---- spant-1.7.0/spant/inst/doc/spant-intro.html | 194 ++++++++++---------- spant-1.7.0/spant/inst/doc/spant-preprocessing.html | 80 +++++--- spant-1.7.0/spant/man/array2mrs_data.Rd |only spant-1.7.0/spant/man/crop_spec.Rd | 4 spant-1.7.0/spant/man/crossprod_3d.Rd |only spant-1.7.0/spant/man/def_nuc.Rd |only spant-1.7.0/spant/man/read_mrs.Rd | 9 spant-1.7.0/spant/man/reexports.Rd | 2 spant-1.7.0/spant/man/sd.Rd | 27 -- spant-1.7.0/spant/man/spant_mpress_drift.Rd | 2 spant-1.7.0/spant/man/write_mrs.Rd |only spant-1.7.0/spant/man/write_mrs_nifti.Rd | 2 spant-1.7.0/spant/tests/testthat/test_nifti.R |only 28 files changed, 374 insertions(+), 283 deletions(-)
Title: Pacific Decadal Oscillation Index Data
Description: Monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to September 2018.
Superseded by 'rsoi' package which includes the historical and
most recent monthly PDO index values together with related climate indices.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.3.0 dated 2020-03-04 and 0.3.1 dated 2020-07-09
DESCRIPTION | 19 +++++++----- MD5 | 28 +++++++++++++------ NEWS.md | 5 +++ R/pdo-download.R | 14 +++++++-- R/zzz.R |only README.md | 44 +++++++++++------------------- build |only inst |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/pdo.Rd | 6 ++-- man/pdo_download.Rd | 8 +++-- tests/testthat/test-pdo-download.R | 5 +++ 21 files changed, 78 insertions(+), 51 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.4.6 dated 2020-05-02 and 0.4.7 dated 2020-07-09
rlang-0.4.6/rlang/R/events.R |only rlang-0.4.6/rlang/tests/testthat/test-events.R |only rlang-0.4.7/rlang/DESCRIPTION | 10 rlang-0.4.7/rlang/MD5 | 282 ++++----- rlang-0.4.7/rlang/NAMESPACE | 10 rlang-0.4.7/rlang/NEWS.md | 65 ++ rlang-0.4.7/rlang/R/arg.R | 76 +- rlang-0.4.7/rlang/R/call.R | 46 + rlang-0.4.7/rlang/R/cnd-abort.R | 87 +- rlang-0.4.7/rlang/R/cnd-error.R | 103 +++ rlang-0.4.7/rlang/R/cnd-handlers.R | 4 rlang-0.4.7/rlang/R/cnd-signal.R | 108 ++- rlang-0.4.7/rlang/R/compat-defer.R |only rlang-0.4.7/rlang/R/compat-lifecycle.R | 11 rlang-0.4.7/rlang/R/deparse.R | 6 rlang-0.4.7/rlang/R/dots.R | 25 rlang-0.4.7/rlang/R/env-binding.R | 285 ++------- rlang-0.4.7/rlang/R/env-special.R | 19 rlang-0.4.7/rlang/R/env.R | 29 rlang-0.4.7/rlang/R/eval-tidy.R | 69 -- rlang-0.4.7/rlang/R/eval.R | 2 rlang-0.4.7/rlang/R/fn.R | 14 rlang-0.4.7/rlang/R/lifecycle-retired.R | 47 + rlang-0.4.7/rlang/R/lifecycle.R | 47 - rlang-0.4.7/rlang/R/nse-defuse.R | 5 rlang-0.4.7/rlang/R/parse.R | 59 + rlang-0.4.7/rlang/R/raw.R |only rlang-0.4.7/rlang/R/s3.R | 2 rlang-0.4.7/rlang/R/sexp.R | 4 rlang-0.4.7/rlang/R/state.R | 3 rlang-0.4.7/rlang/R/trace.R | 115 +++ rlang-0.4.7/rlang/R/types.R | 60 -- rlang-0.4.7/rlang/R/utils.R | 34 + rlang-0.4.7/rlang/README.md | 4 rlang-0.4.7/rlang/build/rlang.pdf |binary rlang-0.4.7/rlang/man/abort.Rd | 70 +- rlang-0.4.7/rlang/man/are_na.Rd | 2 rlang-0.4.7/rlang/man/arg_match.Rd | 34 - rlang-0.4.7/rlang/man/as_data_mask.Rd | 38 - rlang-0.4.7/rlang/man/as_name.Rd | 4 rlang-0.4.7/rlang/man/as_string.Rd | 2 rlang-0.4.7/rlang/man/bare-type-predicates.Rd | 4 rlang-0.4.7/rlang/man/box.Rd | 2 rlang-0.4.7/rlang/man/call2.Rd | 21 rlang-0.4.7/rlang/man/call_name.Rd | 4 rlang-0.4.7/rlang/man/call_parse_type.Rd |only rlang-0.4.7/rlang/man/caller_env.Rd | 4 rlang-0.4.7/rlang/man/cnd_muffle.Rd | 12 rlang-0.4.7/rlang/man/done.Rd | 2 rlang-0.4.7/rlang/man/dots_definitions.Rd | 4 rlang-0.4.7/rlang/man/dyn-dots.Rd | 19 rlang-0.4.7/rlang/man/env_bind.Rd | 5 rlang-0.4.7/rlang/man/env_bury.Rd | 8 rlang-0.4.7/rlang/man/env_parent.Rd | 11 rlang-0.4.7/rlang/man/env_poke.Rd | 13 rlang-0.4.7/rlang/man/env_unbind.Rd | 19 rlang-0.4.7/rlang/man/eval_tidy.Rd | 16 rlang-0.4.7/rlang/man/figures/lifecycle-superseded.svg |only rlang-0.4.7/rlang/man/inherits_any.Rd | 2 rlang-0.4.7/rlang/man/is_function.Rd | 2 rlang-0.4.7/rlang/man/is_installed.Rd | 13 rlang-0.4.7/rlang/man/is_integerish.Rd | 2 rlang-0.4.7/rlang/man/lifecycle.Rd | 44 - rlang-0.4.7/rlang/man/list2.Rd | 5 rlang-0.4.7/rlang/man/missing.Rd | 12 rlang-0.4.7/rlang/man/new_function.Rd | 2 rlang-0.4.7/rlang/man/new_node.Rd | 2 rlang-0.4.7/rlang/man/ns_env.Rd | 2 rlang-0.4.7/rlang/man/nse-defuse.Rd | 4 rlang-0.4.7/rlang/man/parse_expr.Rd | 30 - rlang-0.4.7/rlang/man/parse_quo.Rd |only rlang-0.4.7/rlang/man/parse_quosure.Rd | 5 rlang-0.4.7/rlang/man/raw_deparse_str.Rd |only rlang-0.4.7/rlang/man/return_from.Rd | 2 rlang-0.4.7/rlang/man/rlang_backtrace_on_error.Rd | 2 rlang-0.4.7/rlang/man/scalar-type-predicates.Rd | 4 rlang-0.4.7/rlang/man/stack.Rd | 2 rlang-0.4.7/rlang/man/switch_type.Rd | 2 rlang-0.4.7/rlang/man/tidyeval-data.Rd | 4 rlang-0.4.7/rlang/man/type-predicates.Rd | 4 rlang-0.4.7/rlang/man/vector-coercion.Rd | 2 rlang-0.4.7/rlang/man/with_env.Rd | 2 rlang-0.4.7/rlang/src/Makevars | 6 rlang-0.4.7/rlang/src/export/exported.c | 27 rlang-0.4.7/rlang/src/export/init.c | 34 - rlang-0.4.7/rlang/src/internal.c | 2 rlang-0.4.7/rlang/src/internal/arg.c | 116 +++ rlang-0.4.7/rlang/src/internal/attr.c | 6 rlang-0.4.7/rlang/src/internal/call.c | 2 rlang-0.4.7/rlang/src/internal/dots.c | 63 +- rlang-0.4.7/rlang/src/internal/env-binding.c | 298 +++++++++- rlang-0.4.7/rlang/src/internal/eval-tidy.c | 13 rlang-0.4.7/rlang/src/internal/eval.c | 2 rlang-0.4.7/rlang/src/internal/expr-interp.c | 7 rlang-0.4.7/rlang/src/internal/quo.c | 2 rlang-0.4.7/rlang/src/internal/utils.c | 6 rlang-0.4.7/rlang/src/internal/utils.h | 5 rlang-0.4.7/rlang/src/internal/vec-raw.c |only rlang-0.4.7/rlang/src/lib/attrs.c | 2 rlang-0.4.7/rlang/src/lib/attrs.h | 2 rlang-0.4.7/rlang/src/lib/cnd.c | 2 rlang-0.4.7/rlang/src/lib/cnd.h | 6 rlang-0.4.7/rlang/src/lib/debug.c | 7 rlang-0.4.7/rlang/src/lib/debug.h | 2 rlang-0.4.7/rlang/src/lib/env.c | 106 ++- rlang-0.4.7/rlang/src/lib/env.h | 42 + rlang-0.4.7/rlang/src/lib/node.c | 2 rlang-0.4.7/rlang/src/lib/rlang.c | 4 rlang-0.4.7/rlang/src/lib/rlang.h | 5 rlang-0.4.7/rlang/src/lib/stack.c | 14 rlang-0.4.7/rlang/src/lib/sym-unescape.c | 4 rlang-0.4.7/rlang/src/lib/sym.h | 1 rlang-0.4.7/rlang/src/lib/vec-chr.c | 11 rlang-0.4.7/rlang/src/lib/vec-chr.h | 35 + rlang-0.4.7/rlang/src/lib/vec-lgl.c | 28 rlang-0.4.7/rlang/src/lib/vec-lgl.h | 8 rlang-0.4.7/rlang/src/lib/vec.c | 32 - rlang-0.4.7/rlang/src/lib/vec.h | 35 - rlang-0.4.7/rlang/src/version.c | 2 rlang-0.4.7/rlang/tests/sink.R | 2 rlang-0.4.7/rlang/tests/testthat/helper-c-api.R | 4 rlang-0.4.7/rlang/tests/testthat/output-cnd-abort-parent-trace.txt | 9 rlang-0.4.7/rlang/tests/testthat/output-cnd-abort-trace-reminder.txt | 1 rlang-0.4.7/rlang/tests/testthat/test-arg.R | 62 +- rlang-0.4.7/rlang/tests/testthat/test-c-api.R | 195 +++--- rlang-0.4.7/rlang/tests/testthat/test-cnd-abort.R | 5 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-default.txt | 19 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-full.txt | 20 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-trace.txt | 46 - rlang-0.4.7/rlang/tests/testthat/test-cnd-error-str.txt | 25 rlang-0.4.7/rlang/tests/testthat/test-cnd-handlers.R | 9 rlang-0.4.7/rlang/tests/testthat/test-cnd-signal.R | 97 ++- rlang-0.4.7/rlang/tests/testthat/test-deparse.R | 25 rlang-0.4.7/rlang/tests/testthat/test-dots.R | 39 + rlang-0.4.7/rlang/tests/testthat/test-env-binding.R | 91 ++- rlang-0.4.7/rlang/tests/testthat/test-env-special.R | 4 rlang-0.4.7/rlang/tests/testthat/test-env.R | 25 rlang-0.4.7/rlang/tests/testthat/test-eval-tidy.R | 14 rlang-0.4.7/rlang/tests/testthat/test-fn.R | 4 rlang-0.4.7/rlang/tests/testthat/test-nse-force.R | 5 rlang-0.4.7/rlang/tests/testthat/test-parse.R | 14 rlang-0.4.7/rlang/tests/testthat/test-raw.R |only rlang-0.4.7/rlang/tests/testthat/test-retired.R | 4 rlang-0.4.7/rlang/tests/testthat/test-state.R | 21 rlang-0.4.7/rlang/tests/testthat/test-typo-suggest.txt | 28 rlang-0.4.7/rlang/tests/testthat/test-vec-new.R | 2 rlang-0.4.7/rlang/tests/testthat/test-with-abort.txt | 35 - 147 files changed, 2505 insertions(+), 1313 deletions(-)
Title: The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Description: Utilities for the Pareto, piecewise Pareto and generalized Pareto distribution
that are useful for reinsurance pricing. In particular, the package provides
a non-trivial algorithm that can be used to match the expected losses of a
tower of reinsurance layers with a layer-independent collective risk model.
The theoretical background of the matching algorithm and most other methods
are described in Ulrich Riegel (2018) <doi:10.1007/s13385-018-0177-3>.
Author: Ulrich Riegel [aut, cre]
Maintainer: Ulrich Riegel <ulrich.riegel@gmx.de>
Diff between Pareto versions 2.0.0 dated 2020-05-02 and 2.1.0 dated 2020-07-09
DESCRIPTION | 12 MD5 | 72 +- NAMESPACE | 29 + NEWS.md | 15 R/CollectiveModelMethods.R |only R/Functions.R | 783 +++++++++++++++++++++++++++++- R/PGPModel.R |only R/PPPModel.R | 112 +--- R/ValidationFunctions.R | 26 README.md | 8 build/vignette.rds |binary inst/doc/Pareto.R | 103 ++- inst/doc/Pareto.Rmd | 97 +++ inst/doc/Pareto.html | 175 +++++- man/Example1_AP.Rd | 28 - man/Example1_EL.Rd | 28 - man/Excess_Frequency.PGP_Model.Rd |only man/Excess_Frequency.PPP_Model.Rd |only man/Excess_Frequency.Rd |only man/GenPareto_Layer_Mean.Rd |only man/GenPareto_Layer_SM.Rd |only man/GenPareto_Layer_Var.Rd |only man/GenPareto_ML_Estimator_Alpha.Rd |only man/Layer_Mean.PGP_Model.Rd |only man/Layer_Mean.PPP_Model.Rd |only man/Layer_Mean.Rd |only man/Layer_Sd.PGP_Model.Rd |only man/Layer_Sd.PPP_Model.Rd |only man/Layer_Sd.Rd |only man/Layer_Var.PGP_Model.Rd |only man/Layer_Var.PPP_Model.Rd |only man/Layer_Var.Rd |only man/PGP_Model.Rd |only man/PPP_Model_Excess_Frequency.Rd | 2 man/PPP_Model_Exp_Layer_Loss.Rd | 4 man/PPP_Model_Layer_Sd.Rd | 2 man/PPP_Model_Layer_Var.Rd | 4 man/PPP_Model_Simulate.Rd | 3 man/Simulate_Losses.PGP_Model.Rd |only man/Simulate_Losses.PPP_Model.Rd |only man/Simulate_Losses.Rd |only man/dGenPareto.Rd |only man/is.PGP_Model.Rd |only man/is.valid.PGP_Model.Rd |only man/is.valid.PPP_Model.Rd | 2 man/pGenPareto.Rd |only man/print.PGP_Model.Rd |only man/qGenPareto.Rd |only man/rGenPareto.Rd |only tests/testthat/test_functions_GenPareto.R |only tests/testthat/test_functions_PPP_Model.R | 58 +- vignettes/Pareto.Rmd | 97 +++ 52 files changed, 1402 insertions(+), 258 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.com/>).
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>)
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 1.941 dated 2020-07-01 and 1.946 dated 2020-07-09
DESCRIPTION | 10 +- MD5 | 79 +++++++++-------- NAMESPACE | 3 R/apsim_classic.R | 69 +++++++-------- R/apsim_met.R | 5 - R/apsim_version.R | 10 +- R/apsimx.R | 67 +++++++------- R/apsimx_filetype.R | 6 - R/apsimx_soil_profile.R | 95 +++++++++++++++++++- R/edit_apsim.R | 90 +++++++++---------- R/edit_apsim_replace_soil_profile.R | 5 - R/edit_apsimx_batch.R | 69 +++++++-------- R/edit_apsimx_json.R | 36 +++---- R/edit_apsimx_replace_soil_profile.R | 26 ++--- R/get_iemre_apsim_met.R | 15 +-- R/get_power_apsim_met.R | 30 +++--- R/inspect_apsim_xml.R | 118 +++++++++++++------------ R/inspect_apsimx_json.R | 33 +++---- R/inspect_apsimx_replacement.R | 55 ++++++------ R/ssurgo2sp.R | 30 +++--- R/view_apsimx.R |only R/zzz.R | 19 +++- README.md | 8 + inst/doc/apsimx-scripts.html | 6 - inst/doc/apsimx.R | 61 ++++++------- inst/doc/apsimx.Rmd | 61 ++++++------- inst/doc/apsimx.html | 151 +++++++++++++++++---------------- inst/extdata/Maize.csv |only inst/extdata/Wheat.csv |only man/apsim.Rd | 2 man/apsimx_soil_profile.Rd | 8 + man/edit_apsim_replace_soil_profile.Rd | 17 +++ man/edit_apsimx.Rd | 8 - man/edit_apsimx_batch.Rd | 2 man/get_iem_apsim_met.Rd | 5 - man/view_apsim.Rd |only man/view_apsimx.Rd |only man/write_apsim_met.Rd | 4 tests/test_classic_examples.r | 66 +++++++------- tests/test_edit_batch.R | 2 tests/test_examples.R | 1 tests/test_ssurgo2sp.R | 2 vignettes/apsimx.Rmd | 61 ++++++------- 43 files changed, 750 insertions(+), 585 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.4.4 dated 2020-05-05 and 1.4.5 dated 2020-07-09
pillar-1.4.4/pillar/R/compat-lifecycle.R |only pillar-1.4.4/pillar/R/lengths.R |only pillar-1.4.4/pillar/R/shaft.R |only pillar-1.4.4/pillar/R/strrep.R |only pillar-1.4.4/pillar/build |only pillar-1.4.4/pillar/man/figures/lifecycle-retired.svg |only pillar-1.4.4/pillar/tests/testthat/out-native/deal1.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/deal2.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/deal3.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/utf8.txt |only pillar-1.4.4/pillar/tests/testthat/out/list-one.txt |only pillar-1.4.4/pillar/tests/testthat/out/tibble-all-digits-secs.txt |only pillar-1.4.5/pillar/DESCRIPTION | 22 - pillar-1.4.5/pillar/MD5 | 111 +++++----- pillar-1.4.5/pillar/NAMESPACE | 3 pillar-1.4.5/pillar/NEWS.md | 23 ++ pillar-1.4.5/pillar/R/capital.R | 6 pillar-1.4.5/pillar/R/deprecated.R | 2 pillar-1.4.5/pillar/R/extent.R | 14 + pillar-1.4.5/pillar/R/multi.R | 12 - pillar-1.4.5/pillar/R/pillar-package.R | 6 pillar-1.4.5/pillar/R/pillar.R | 10 pillar-1.4.5/pillar/R/shaft-.R |only pillar-1.4.5/pillar/R/shaft-simple.R | 1 pillar-1.4.5/pillar/R/sigfig.R | 10 pillar-1.4.5/pillar/R/testthat.R | 2 pillar-1.4.5/pillar/R/title.R | 6 pillar-1.4.5/pillar/R/type-sum.R | 14 - pillar-1.4.5/pillar/R/type.R | 16 + pillar-1.4.5/pillar/R/zzz.R | 22 - pillar-1.4.5/pillar/README.md | 25 -- pillar-1.4.5/pillar/man/align.Rd |only pillar-1.4.5/pillar/man/colonnade.Rd | 2 pillar-1.4.5/pillar/man/deprecated.Rd | 2 pillar-1.4.5/pillar/man/extra_cols.Rd | 2 pillar-1.4.5/pillar/man/figures/lifecycle-superseded.svg |only pillar-1.4.5/pillar/man/format_type_sum.Rd | 2 pillar-1.4.5/pillar/man/new_pillar_shaft.Rd | 6 pillar-1.4.5/pillar/man/new_pillar_title.Rd | 2 pillar-1.4.5/pillar/man/new_pillar_type.Rd | 2 pillar-1.4.5/pillar/man/pillar-package.Rd | 6 pillar-1.4.5/pillar/man/pillar.Rd | 8 pillar-1.4.5/pillar/man/pillar_shaft.Rd | 17 - pillar-1.4.5/pillar/man/type_sum.Rd | 6 pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/helper-output.R | 10 pillar-1.4.5/pillar/tests/testthat/out-native/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/test-format_decimal.R | 1 pillar-1.4.5/pillar/tests/testthat/test-format_integer.R | 2 pillar-1.4.5/pillar/tests/testthat/test-format_integer64.R |only pillar-1.4.5/pillar/tests/testthat/test-format_rowid.R | 2 pillar-1.4.5/pillar/tests/testthat/test-format_scientific.R | 4 pillar-1.4.5/pillar/tests/testthat/test-format_time.R | 1 78 files changed, 220 insertions(+), 160 deletions(-)
Title: Regularization Paths for SCAD and MCP Penalized Regression
Models
Description: Fits regularization paths for linear regression, GLM, and Cox
regression models using lasso or nonconvex penalties, in particular the
minimax concave penalty (MCP) and smoothly clipped absolute deviation (SCAD)
penalty, with options for additional L2 penalties (the "elastic net" idea).
Utilities for carrying out cross-validation as well as post-fitting
visualization, summarization, inference, and prediction are also provided.
Author: Patrick Breheny [aut, cre] (<https://orcid.org/0000-0002-0650-1119>)
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between ncvreg versions 3.11.2 dated 2020-02-13 and 3.12.0 dated 2020-07-09
ncvreg-3.11.2/ncvreg/R/ncvreg_fit.R |only ncvreg-3.11.2/ncvreg/inst/testing-functions.R |only ncvreg-3.11.2/ncvreg/inst/tests |only ncvreg-3.11.2/ncvreg/tests/run |only ncvreg-3.12.0/ncvreg/DESCRIPTION | 12 - ncvreg-3.12.0/ncvreg/MD5 | 80 +++++------- ncvreg-3.12.0/ncvreg/NAMESPACE | 1 ncvreg-3.12.0/ncvreg/NEWS.md | 7 + ncvreg-3.12.0/ncvreg/R/ncvfit.R |only ncvreg-3.12.0/ncvreg/R/ncvreg.R | 23 ++- ncvreg-3.12.0/ncvreg/R/ncvsurv.R | 1 ncvreg-3.12.0/ncvreg/R/permres-ncvreg.R | 1 ncvreg-3.12.0/ncvreg/README.md | 8 - ncvreg-3.12.0/ncvreg/build/vignette.rds |binary ncvreg-3.12.0/ncvreg/inst/doc/getting-started.html | 140 ++++++++++++--------- ncvreg-3.12.0/ncvreg/inst/tinytest |only ncvreg-3.12.0/ncvreg/man/auc.Rd | 2 ncvreg-3.12.0/ncvreg/man/ncvfit.Rd |only ncvreg-3.12.0/ncvreg/man/ncvreg-package.Rd | 2 ncvreg-3.12.0/ncvreg/src/cox-dh.c | 6 ncvreg-3.12.0/ncvreg/src/ncvreg_init.c | 2 ncvreg-3.12.0/ncvreg/src/rawfit_gaussian.c |only ncvreg-3.12.0/ncvreg/tests/test.R |only 23 files changed, 165 insertions(+), 120 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut, cre],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr versions 1.3.0 dated 2020-06-27 and 1.3.1 dated 2020-07-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 23 ++++++++++++----------- R/dplyr_hof.R | 2 +- 4 files changed, 19 insertions(+), 18 deletions(-)
Title: 'hms' Based Timer
Description: Tracks elapsed clock time using a `hms::hms()` scalar,
which if running has an attribute named start
that specifies the system time when the timer was started.
The elapsed time is the value of the scalar
plus the difference between the current system time
and the system time when the timer was started.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between hmstimer versions 0.0.2 dated 2019-07-24 and 0.1.0 dated 2020-07-09
hmstimer-0.0.2/hmstimer/R/check.R |only hmstimer-0.1.0/hmstimer/DESCRIPTION | 20 ++- hmstimer-0.1.0/hmstimer/LICENSE | 2 hmstimer-0.1.0/hmstimer/MD5 | 64 ++++++++-- hmstimer-0.1.0/hmstimer/NAMESPACE | 6 + hmstimer-0.1.0/hmstimer/NEWS.md | 9 + hmstimer-0.1.0/hmstimer/R/ceiling.R |only hmstimer-0.1.0/hmstimer/R/chk.R |only hmstimer-0.1.0/hmstimer/R/elapsed.R |only hmstimer-0.1.0/hmstimer/R/floor.R |only hmstimer-0.1.0/hmstimer/R/format.R |only hmstimer-0.1.0/hmstimer/R/hms-timer.R |only hmstimer-0.1.0/hmstimer/R/hmstimer-package.R | 1 hmstimer-0.1.0/hmstimer/R/is-started.R |only hmstimer-0.1.0/hmstimer/R/is-stopped.R |only hmstimer-0.1.0/hmstimer/R/namespace.R |only hmstimer-0.1.0/hmstimer/R/params.R |only hmstimer-0.1.0/hmstimer/R/reset.R |only hmstimer-0.1.0/hmstimer/R/round.R |only hmstimer-0.1.0/hmstimer/R/start.R |only hmstimer-0.1.0/hmstimer/R/stop.R |only hmstimer-0.1.0/hmstimer/R/timer.R | 102 ++--------------- hmstimer-0.1.0/hmstimer/R/utils.R | 4 hmstimer-0.1.0/hmstimer/README.md | 77 +++++-------- hmstimer-0.1.0/hmstimer/inst |only hmstimer-0.1.0/hmstimer/man/figures |only hmstimer-0.1.0/hmstimer/man/hms-timer.Rd |only hmstimer-0.1.0/hmstimer/man/hmstimer-package.Rd | 10 + hmstimer-0.1.0/hmstimer/man/params.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_ceiling.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_elapsed.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_floor.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_format.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_is_started.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_is_stopped.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_reset.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_round.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_start.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_stop.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_timer.Rd | 84 +++----------- hmstimer-0.1.0/hmstimer/tests/testthat/test-ceiling.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-floor.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-format.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-reset.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-round.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-timer.R | 106 +++++++++--------- 46 files changed, 210 insertions(+), 275 deletions(-)
Title: Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Description: Constructs D-optimal or near D-optimal treatment and block designs for linear
treatment models with crossed or nested block factors. The treatment design can be any
arbitrary linear model defined by a treatment model formula and the block design can be
any feasible combination of crossed or nested block factors. The block design factors
are optimized sequentially and the levels of each successive block factor are optimized
within the levels of each preceding block factor. Crossed block designs with non-singular
interaction effects are optimized using a weighting scheme that allows for differential
weighting of first and second-order block effects. Outputs include a table showing the
allocation of treatments to blocks and tables showing the achieved D-efficiency factors
for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 4.2 dated 2020-06-11 and 4.3 dated 2020-07-09
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/blocks.r | 1 - R/design.r | 12 +++++------- 4 files changed, 13 insertions(+), 16 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii)
Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v)
Matrix functions, (vi) Projector and canonical efficiency functions, and (vii)
Miscellaneous functions. There is a vignette describing how to use the
design functions for randomizing and assessing designs available as a
vignette called 'DesignNotes'. The ANOVA functions facilitate the extraction of
information when the 'Error' function has been used in the call to 'aov'.
The package 'dae' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between dae versions 3.1-23 dated 2020-03-16 and 3.1-27 dated 2020-07-09
DESCRIPTION | 12 +-- MD5 | 33 ++++----- NAMESPACE | 1 R/designGGPlot.v1.r | 14 ++- R/mat.functions.r | 150 ++++++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 18 ++++ inst/doc/DesignNotes.pdf |binary inst/doc/dae-manual.pdf |binary man/dae-package.Rd | 7 + man/designAmeasures.Rd | 9 +- man/designGGPlot.Rd | 4 - man/designRandomize.Rd | 7 + man/mat.Vpredicts.Rd | 16 ++-- man/mat.random.Rd |only tests/testthat.R | 2 tests/testthat/testAmeasures.r | 8 +- 18 files changed, 170 insertions(+), 111 deletions(-)
More information about ActivePathways at CRAN
Permanent link
Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.rsp versions 0.43.2 dated 2019-10-17 and 0.44.0 dated 2020-07-09
R.rsp-0.43.2/R.rsp/inst/doc/incl |only R.rsp-0.43.2/R.rsp/inst/doc/templates |only R.rsp-0.44.0/R.rsp/DESCRIPTION | 10 R.rsp-0.44.0/R.rsp/MD5 | 70 ++-- R.rsp-0.44.0/R.rsp/NAMESPACE | 3 R.rsp-0.44.0/R.rsp/NEWS | 24 + R.rsp-0.44.0/R.rsp/R/000-rsp-brackets.R |only R.rsp-0.44.0/R.rsp/R/RspCode.R | 4 R.rsp-0.44.0/R.rsp/R/RspComment.R | 5 R.rsp-0.44.0/R.rsp/R/RspDirective.R | 6 R.rsp-0.44.0/R.rsp/R/RspDocument.toR.R | 11 R.rsp-0.44.0/R.rsp/R/RspParser.R | 26 - R.rsp-0.44.0/R.rsp/R/RspRSourceCodeFactory.R | 2 R.rsp-0.44.0/R.rsp/R/RspShSourceCode.R | 2 R.rsp-0.44.0/R.rsp/R/RspShSourceCodeFactory.R | 10 R.rsp-0.44.0/R.rsp/R/RspString.R | 2 R.rsp-0.44.0/R.rsp/R/buildVignette.R | 2 R.rsp-0.44.0/R.rsp/R/parseInternetMediaType.R | 8 R.rsp-0.44.0/R.rsp/R/rcat.R | 7 R.rsp-0.44.0/R.rsp/R/rfile.R | 142 +++++++++- R.rsp-0.44.0/R.rsp/R/rstring.R | 3 R.rsp-0.44.0/R.rsp/R/utils.R | 4 R.rsp-0.44.0/R.rsp/build/vignette.rds |binary R.rsp-0.44.0/R.rsp/inst/doc/Dynamic_document_creation_using_RSP.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/RSP_intro.html | 14 R.rsp-0.44.0/R.rsp/inst/doc/RSP_refcard.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/R_packages-LaTeX_vignettes.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/R_packages-Vignettes_prior_to_R300.pdf |binary R.rsp-0.44.0/R.rsp/inst/rsp_tests_experimental/birth-sh.txt | 12 R.rsp-0.44.0/R.rsp/inst/rsp_tests_experimental/birth-sh.txt.rsp | 7 R.rsp-0.44.0/R.rsp/man/R.rsp-package.Rd | 4 R.rsp-0.44.0/R.rsp/man/RspShSourceCode.Rd | 3 R.rsp-0.44.0/R.rsp/man/rcat.Rd | 3 R.rsp-0.44.0/R.rsp/man/rfile.Rd | 6 R.rsp-0.44.0/R.rsp/man/toR.RspDocument.Rd | 2 35 files changed, 303 insertions(+), 89 deletions(-)
Title: Sensitivity Analysis for Publication Bias in Meta-Analyses
Description: Performs sensitivity analysis for publication bias in meta-analyses (per Mathur & VanderWeele, 2020 [<https://osf.io/s9dp6>]).
These analyses enable statements such as: "For publication bias to shift the observed point estimate to the null,
'significant' results would need to be at least 30-fold more likely to be published than negative or 'nonsignificant'
results." Comparable statements can be made regarding shifting to a chosen non-null value or shifting the confidence
interval. Provides a worst-case meta-analytic point estimate under maximal publication bias obtained simply by conducting
a standard meta-analysis of only the negative and "nonsignificant" studies.
Author: Maya B. Mathur, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between PublicationBias versions 2.0.0 dated 2020-03-30 and 2.1.0 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/functions.R | 42 ++++++++++++++++++++++++++---------------- man/corrected_meta.Rd | 17 +++++++++++++---- man/significance_funnel.Rd | 20 +++++++++++++++----- man/svalue.Rd | 15 ++++++++++++--- 6 files changed, 75 insertions(+), 37 deletions(-)
More information about PublicationBias at CRAN
Permanent link
Title: Estimate Parameters in the Generalized SBM
Description: Given an adjacency matrix drawn from a Generalized Stochastic Block Model with missing observations, this package robustly estimates the probabilities of connection between nodes and detects outliers nodes, as describes in Gaucher, Klopp and Robin (2019) <arXiv:1911.13122>.
Author: Genevieve Robin [aut],
Solenne Gaucher [aut, cre]
Maintainer: Solenne Gaucher <solenne.gaucher@math.u-psud.fr>
Diff between gsbm versions 0.1.0 dated 2020-02-28 and 0.1.1 dated 2020-07-09
DESCRIPTION | 12 +- MD5 | 36 +++--- NAMESPACE | 1 NEWS.md |only R/PrimarySchool.R |only R/blogosphere.R | 4 R/cross_validation.R | 6 - R/gsbm_mcgd.R | 28 ++--- build/vignette.rds |binary data/PrimarySchool.RData |only inst/doc/PrimarySchool.R |only inst/doc/PrimarySchool.Rmd |only inst/doc/PrimarySchool.html |only inst/doc/blogosphere.R | 8 - inst/doc/blogosphere.html | 109 ++++++++----------- inst/doc/les_miserables.R | 10 - inst/doc/les_miserables.html | 240 +++++++++++++++++++++---------------------- man/PrimarySchool.Rd |only man/blogosphere.Rd | 10 + man/crossval.Rd | 6 - man/gsbm_mcgd.Rd | 2 man/les_miserables.Rd | 6 - vignettes/PrimarySchool.Rmd |only 23 files changed, 242 insertions(+), 236 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 3.0 dated 2020-04-09 and 3.1 dated 2020-07-09
tmap-3.0/tmap/R/add_data_to_gps.R |only tmap-3.0/tmap/R/add_leaflet_titles.R |only tmap-3.0/tmap/R/cat2pal.R |only tmap-3.0/tmap/R/cat2shape.R |only tmap-3.0/tmap/R/check_shape.R |only tmap-3.0/tmap/R/determine_asp_ratios.R |only tmap-3.0/tmap/R/facet_functions.R |only tmap-3.0/tmap/R/gather_shape_info.R |only tmap-3.0/tmap/R/get_sepia_col.R |only tmap-3.0/tmap/R/gridplot.R |only tmap-3.0/tmap/R/grob_mod.R |only tmap-3.0/tmap/R/is_num_string.R |only tmap-3.0/tmap/R/legend_hist.R |only tmap-3.0/tmap/R/legend_prepare.R |only tmap-3.0/tmap/R/lines_midpoints.R |only tmap-3.0/tmap/R/meta_plot.R |only tmap-3.0/tmap/R/meta_plot_items.R |only tmap-3.0/tmap/R/num2pal.R |only tmap-3.0/tmap/R/num2shape.R |only tmap-3.0/tmap/R/order_x.R |only tmap-3.0/tmap/R/plot_all.R |only tmap-3.0/tmap/R/plot_misc_functions.R |only tmap-3.0/tmap/R/pointLabelGrid.R |only tmap-3.0/tmap/R/prearrange_element_order.R |only tmap-3.0/tmap/R/prepare_vp.R |only tmap-3.0/tmap/R/preprocess_facet_layout.R |only tmap-3.0/tmap/R/preprocess_gt.R |only tmap-3.0/tmap/R/preprocess_shapes.R |only tmap-3.0/tmap/R/sf_functions.R |only tmap-3.0/tmap/R/split_g.R |only tmap-3.0/tmap/R/stars_misc.R |only tmap-3.0/tmap/R/symbol_functions.R |only tmap-3.0/tmap/R/text_functions.R |only tmap-3.1/tmap/DESCRIPTION | 18 tmap-3.1/tmap/MD5 | 214 +++---- tmap-3.1/tmap/NAMESPACE | 6 tmap-3.1/tmap/NEWS | 10 tmap-3.1/tmap/R/grid_shp.R | 89 --- tmap-3.1/tmap/R/map_cat2pal.R |only tmap-3.1/tmap/R/map_cat2shape.R |only tmap-3.1/tmap/R/map_num2pal.R |only tmap-3.1/tmap/R/map_num2shape.R |only tmap-3.1/tmap/R/misc_grid.R |only tmap-3.1/tmap/R/misc_sf.R |only tmap-3.1/tmap/R/misc_stars.R |only tmap-3.1/tmap/R/misc_text.R |only tmap-3.1/tmap/R/pkg.R | 4 tmap-3.1/tmap/R/plot_1.R |only tmap-3.1/tmap/R/plot_attributes.R |only tmap-3.1/tmap/R/plot_grid.R |only tmap-3.1/tmap/R/plot_legend.R |only tmap-3.1/tmap/R/plot_legend_hist.R |only tmap-3.1/tmap/R/plot_legend_prepare.R |only tmap-3.1/tmap/R/plot_map.R | 6 tmap-3.1/tmap/R/plot_meta.R |only tmap-3.1/tmap/R/plot_n.R |only tmap-3.1/tmap/R/plot_symbol_misc.R |only tmap-3.1/tmap/R/plot_symbols.R |only tmap-3.1/tmap/R/plot_text.R |only tmap-3.1/tmap/R/plot_text_pointLabelGrid.R |only tmap-3.1/tmap/R/pre_check_shape.R |only tmap-3.1/tmap/R/pre_gather_shape_info.R |only tmap-3.1/tmap/R/pre_order_x.R |only tmap-3.1/tmap/R/pre_prepare_vp.R |only tmap-3.1/tmap/R/pre_process_facet_layout.R |only tmap-3.1/tmap/R/pre_process_gt.R |only tmap-3.1/tmap/R/pre_process_shapes.R |only tmap-3.1/tmap/R/pre_split_x.R |only tmap-3.1/tmap/R/print.R | 3 tmap-3.1/tmap/R/print_shortcut.R | 10 tmap-3.1/tmap/R/print_tmap.R | 75 +- tmap-3.1/tmap/R/process_add_data_to_gps.R |only tmap-3.1/tmap/R/process_aes.R | 32 - tmap-3.1/tmap/R/process_breaks.R |only tmap-3.1/tmap/R/process_determine_asp_ratios.R |only tmap-3.1/tmap/R/process_fill.R | 9 tmap-3.1/tmap/R/process_get_arrangement.R |only tmap-3.1/tmap/R/process_gps.R | 9 tmap-3.1/tmap/R/process_layers.R | 11 tmap-3.1/tmap/R/process_limit_nx.R |only tmap-3.1/tmap/R/process_lwd_aes.R | 3 tmap-3.1/tmap/R/process_meta.R | 7 tmap-3.1/tmap/R/process_raster.R | 12 tmap-3.1/tmap/R/process_shape_aes.R | 4 tmap-3.1/tmap/R/process_shapes.R | 37 - tmap-3.1/tmap/R/process_size_aes.R | 2 tmap-3.1/tmap/R/process_split_g.R |only tmap-3.1/tmap/R/process_symbols.R | 8 tmap-3.1/tmap/R/process_tm.R | 15 tmap-3.1/tmap/R/qtm.R | 39 - tmap-3.1/tmap/R/tm_add_legend.R | 11 tmap-3.1/tmap/R/tm_layers.R | 23 tmap-3.1/tmap/R/tm_layout.R | 5 tmap-3.1/tmap/R/tm_misc_elements.R | 29 - tmap-3.1/tmap/R/tm_shape.R | 10 tmap-3.1/tmap/R/tm_view.R | 2 tmap-3.1/tmap/R/tmap_arrange.R | 10 tmap-3.1/tmap/R/tmap_icons.R | 2 tmap-3.1/tmap/R/tmap_mode.R | 22 tmap-3.1/tmap/R/tmap_options.R | 16 tmap-3.1/tmap/R/tmap_save.R | 25 tmap-3.1/tmap/R/tmap_tip.R | 69 +- tmap-3.1/tmap/R/view_add_leaflet_titles.R |only tmap-3.1/tmap/R/view_add_legend.R |only tmap-3.1/tmap/R/view_format_popups.R |only tmap-3.1/tmap/R/view_functions.R |only tmap-3.1/tmap/R/view_set_bounds.R |only tmap-3.1/tmap/R/view_tmap.R | 594 +++----------------- tmap-3.1/tmap/R/xxx_scales.R | 225 ------- tmap-3.1/tmap/build/create_rivers.R | 14 tmap-3.1/tmap/build/create_world.R | 1 tmap-3.1/tmap/build/vignette.rds |binary tmap-3.1/tmap/data/rivers.rda |binary tmap-3.1/tmap/inst/doc/tmap-JSS-code.Rmd | 4 tmap-3.1/tmap/inst/doc/tmap-JSS-code.html | 722 +++++++++++++------------ tmap-3.1/tmap/inst/doc/tmap-changes.Rmd | 2 tmap-3.1/tmap/inst/doc/tmap-changes.html | 174 +++--- tmap-3.1/tmap/inst/doc/tmap-getstarted.R | 7 tmap-3.1/tmap/inst/doc/tmap-getstarted.Rmd | 36 - tmap-3.1/tmap/inst/doc/tmap-getstarted.html | 316 +++++----- tmap-3.1/tmap/inst/tips.txt | 42 + tmap-3.1/tmap/man/land.Rd | 2 tmap-3.1/tmap/man/qtm.Rd | 2 tmap-3.1/tmap/man/tm_add_legend.Rd | 47 + tmap-3.1/tmap/man/tm_compass.Rd | 6 tmap-3.1/tmap/man/tm_facets.Rd | 2 tmap-3.1/tmap/man/tm_layout.Rd | 4 tmap-3.1/tmap/man/tm_lines.Rd | 5 tmap-3.1/tmap/man/tm_mouse_coordinates.Rd |only tmap-3.1/tmap/man/tm_polygons.Rd | 12 tmap-3.1/tmap/man/tm_raster.Rd | 2 tmap-3.1/tmap/man/tm_scale_bar.Rd | 6 tmap-3.1/tmap/man/tm_shape.Rd | 12 tmap-3.1/tmap/man/tm_symbols.Rd | 10 tmap-3.1/tmap/man/tm_text.Rd | 2 tmap-3.1/tmap/man/tm_view.Rd | 5 tmap-3.1/tmap/man/tmap-package.Rd | 2 tmap-3.1/tmap/man/tmap_design_mode.Rd |only tmap-3.1/tmap/man/tmap_mode.Rd | 5 tmap-3.1/tmap/man/tmap_options.Rd | 13 tmap-3.1/tmap/man/tmap_save.Rd | 10 tmap-3.1/tmap/man/tmap_tip.Rd | 7 tmap-3.1/tmap/vignettes/tmap-JSS-code.Rmd | 4 tmap-3.1/tmap/vignettes/tmap-changes.Rmd | 2 tmap-3.1/tmap/vignettes/tmap-getstarted.Rmd | 36 - 145 files changed, 1479 insertions(+), 1701 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs B-splines and its integral, M-splines
and its integral (I-splines), convex splines (C-splines),
generalized Bernstein polynomials, and their derivatives.
It also contains a C++ head-only library integrated with Rcpp.
See De Boor (1978) <doi:10.1002/zamm.19800600129>,
Ramsay (1988) <doi:10.1214/ss/1177012761>, and
Meyer (2008) <doi:10.1214/08-AOAS167>
for more information about the spline basis.
Author: Wenjie Wang [aut, cre] (<https://orcid.org/0000-0003-0363-3180>),
Jun Yan [aut] (<https://orcid.org/0000-0003-4401-7296>)
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between splines2 versions 0.2.8 dated 2018-06-14 and 0.3.0 dated 2020-07-09
splines2-0.2.8/splines2/man/print.Rd |only splines2-0.2.8/splines2/tests/testthat |only splines2-0.2.8/splines2/tests/testthat.R |only splines2-0.3.0/splines2/DESCRIPTION | 41 +- splines2-0.3.0/splines2/MD5 | 117 +++-- splines2-0.3.0/splines2/NAMESPACE | 9 splines2-0.3.0/splines2/NEWS.md | 36 + splines2-0.3.0/splines2/R/RcppExports.R |only splines2-0.3.0/splines2/R/bSpline.R | 317 ++++----------- splines2-0.3.0/splines2/R/bernsteinPoly.R |only splines2-0.3.0/splines2/R/cSpline.R | 337 +++++++--------- splines2-0.3.0/splines2/R/dbs.R | 266 ++++--------- splines2-0.3.0/splines2/R/deriv.R | 194 +++------ splines2-0.3.0/splines2/R/iSpline.R | 271 +++++-------- splines2-0.3.0/splines2/R/ibs.R | 194 ++++----- splines2-0.3.0/splines2/R/mSpline.R | 214 +++++----- splines2-0.3.0/splines2/R/misc.R | 88 +--- splines2-0.3.0/splines2/R/predict.R | 94 +--- splines2-0.3.0/splines2/R/print.R | 54 -- splines2-0.3.0/splines2/R/splines2-package.R | 56 +- splines2-0.3.0/splines2/README.md | 196 +++++++-- splines2-0.3.0/splines2/build/vignette.rds |binary splines2-0.3.0/splines2/inst/CITATION | 23 - splines2-0.3.0/splines2/inst/bib/splines2.bib | 43 ++ splines2-0.3.0/splines2/inst/doc/splines2-intro.R | 145 ++++--- splines2-0.3.0/splines2/inst/doc/splines2-intro.Rmd | 338 +++++++++-------- splines2-0.3.0/splines2/inst/doc/splines2-intro.html | 321 ++++++++++------ splines2-0.3.0/splines2/inst/doc/splines2-wi-rcpp.Rmd |only splines2-0.3.0/splines2/inst/doc/splines2-wi-rcpp.html |only splines2-0.3.0/splines2/inst/examples |only splines2-0.3.0/splines2/inst/include |only splines2-0.3.0/splines2/inst/tinytest |only splines2-0.3.0/splines2/inst/v0.2.8.R |only splines2-0.3.0/splines2/man/bSpline.Rd | 92 ++-- splines2-0.3.0/splines2/man/bernsteinPoly.Rd |only splines2-0.3.0/splines2/man/cSpline.Rd | 87 ++-- splines2-0.3.0/splines2/man/dbs.Rd | 94 ++-- splines2-0.3.0/splines2/man/deriv.Rd | 70 +-- splines2-0.3.0/splines2/man/iSpline.Rd | 80 ++-- splines2-0.3.0/splines2/man/ibs.Rd | 90 ++-- splines2-0.3.0/splines2/man/mSpline.Rd | 78 ++- splines2-0.3.0/splines2/man/predict.Rd | 24 - splines2-0.3.0/splines2/man/splines2.Rd | 29 + splines2-0.3.0/splines2/src |only splines2-0.3.0/splines2/tests/tinytest.R |only splines2-0.3.0/splines2/vignettes/splines2-intro.Rmd | 338 +++++++++-------- splines2-0.3.0/splines2/vignettes/splines2-wi-rcpp.Rmd |only 47 files changed, 2167 insertions(+), 2169 deletions(-)
Title: Client for OGC Sensor Observation Services
Description: A client for Sensor Observation Services (SOS, see
<https://www.opengeospatial.org/standards/sos>) as specified by the
Open Geospatial Consortium (OGC). With the package users can
retrieve (meta)data from SOS instances and interactively
create requests for near real-time observation
data based on the available sensors, phenomena, observations etc.
using thematic, temporal, and spatial filtering.
Author: Daniel Nuest [cre, aut] (<https://orcid.org/0000-0002-0024-5046>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Ben Graeler [aut] (<https://orcid.org/0000-0001-5443-4304>),
Benjamin Pross [aut],
Eike Hinderk Juerrens [aut],
52°North Initiative for Geospatial Open Source Software GmbH [cph]
Maintainer: Daniel Nuest <daniel.nuest@uni-muenster.de>
Diff between sos4R versions 0.4.1 dated 2020-06-10 and 0.4.2 dated 2020-07-09
DESCRIPTION | 8 - MD5 | 38 ++--- NEWS.md | 4 build/vignette.rds |binary inst/doc/sos4R-vignette-02-ogc-sos.html | 20 ++ inst/doc/sos4R-vignette-03-sos-operations.html | 167 +++++++++++----------- inst/doc/sos4R-vignette-04-extensions.html | 55 +++++-- inst/doc/sos4R-vignette-05-wrapper-functions.html | 64 +++++--- inst/doc/sos4R.pdf |binary man/Coercion.Rd | 2 man/DescribeSensor.Rd | 3 man/SML.Rd | 2 man/SOS.Rd | 2 man/SosObservationOffering.Rd | 2 man/getData.Rd | 2 man/phenomena.Rd | 2 man/sites.Rd | 4 man/sos4R-package.Rd | 6 tests/testthat/test_getobservation.R | 1 vignettes/sos4R.html | 44 +++-- 20 files changed, 264 insertions(+), 162 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.6.0 dated 2020-04-18 and 0.6.1 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/politenessPlot.R | 15 +++++++++++---- build/vignette.rds |binary inst/doc/politeness.html | 16 ++++++++-------- man/bowl_offers.Rd | 6 ++++-- man/feature_table.Rd | 4 +++- man/hedge_list.Rd | 4 +++- man/negative_list.Rd | 4 +++- man/phone_offers.Rd | 6 ++++-- man/polite_dicts.Rd | 4 +++- man/politenessPlot.Rd | 5 ++++- man/positive_list.Rd | 4 +++- man/receptive_model.Rd | 4 +++- 14 files changed, 66 insertions(+), 40 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.4.2 dated 2020-07-07 and 0.4.3 dated 2020-07-09
DESCRIPTION | 6 +- MD5 | 23 ++++---- NEWS.md | 5 + build/partial.rdb |binary inst/doc/getting-started.html | 28 ++------- inst/doc/inapplicable.html | 112 ++++++++++++++++----------------------- inst/doc/profile-scores.html | 20 ------ inst/doc/profile.html | 98 ++++++++++++++-------------------- src/RMorphy.c | 27 +++++++-- src/RMorphy.h | 2 tests/testthat/test-RMorphy.R |only tests/testthat/test-TreeSearch.R | 102 +++++++++++++++++++---------------- tests/testthat/test-pp-ICS.R | 28 ++++++--- 13 files changed, 216 insertions(+), 235 deletions(-)
Title: Find All TODO Comments and More
Description: This is a simple addin to 'RStudio' that finds all 'TODO', 'FIX ME', 'CHANGED' etc. comments in your project and shows them as a markers list.
Author: Dominik Krzemiński [aut, cre]
Maintainer: Dominik Krzemiński <raymon92@gmail.com>
Diff between todor versions 0.1.0 dated 2020-03-03 and 0.1.1 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 1 + R/todor.R | 25 +++++++++++++++++++++---- inst/rstudio/addins.dcf | 5 +++++ man/todor_file_addin.Rd |only 6 files changed, 36 insertions(+), 12 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable and performant 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2),
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash
code)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.13.2 dated 2020-07-08 and 0.13.3 dated 2020-07-09
stringfish-0.13.2/stringfish/src/xxhash/xxh3.h |only stringfish-0.13.3/stringfish/ChangeLog | 3 +++ stringfish-0.13.3/stringfish/DESCRIPTION | 8 ++++---- stringfish-0.13.3/stringfish/MD5 | 15 +++++++-------- stringfish-0.13.3/stringfish/configure | 1 + stringfish-0.13.3/stringfish/configure.ac | 1 + stringfish-0.13.3/stringfish/inst/doc/vignette.html | 2 +- stringfish-0.13.3/stringfish/src/sf_functions.cpp | 4 ++-- stringfish-0.13.3/stringfish/src/xxhash/xxhash.h | 2 +- 9 files changed, 20 insertions(+), 16 deletions(-)
Title: Optimal Stratification in Stratified Sampling
Description: An Optimization Algorithm Applied to
Stratification Problem.This function aims
at constructing optimal strata with an optimization algorithm
based on a global optimisation technique called vns.
Author: Leonardo de Lima, Jose Brito, Pedro Gonzalez and Breno Oliveira
Maintainer: Jose Brito <jambrito@gmail.com>
Diff between stratvns versions 1.0 dated 2017-05-27 and 1.1 dated 2020-07-09
stratvns-1.0/stratvns/R/EVP.R |only stratvns-1.0/stratvns/man/EVP.Rd |only stratvns-1.1/stratvns/DESCRIPTION | 28 +++++++++++----------------- stratvns-1.1/stratvns/MD5 | 19 +++++++++++++++---- stratvns-1.1/stratvns/NAMESPACE | 14 +++++++------- stratvns-1.1/stratvns/R/STRATENUM.R |only stratvns-1.1/stratvns/R/STRATVNS.R |only stratvns-1.1/stratvns/R/U1.R |only stratvns-1.1/stratvns/R/U15.R |only stratvns-1.1/stratvns/R/U21.R |only stratvns-1.1/stratvns/data |only stratvns-1.1/stratvns/man/STRATENUM.Rd |only stratvns-1.1/stratvns/man/STRATVNS.Rd |only stratvns-1.1/stratvns/man/U1.Rd |only stratvns-1.1/stratvns/man/U15.Rd |only stratvns-1.1/stratvns/man/U21.Rd |only 16 files changed, 33 insertions(+), 28 deletions(-)
Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators. It allows for robust parameter estimation and prediction using Gaussian stochastic process emulator. It also implements the parallel partial Gaussian stochastic process emulator for computer model with massive outputs See the reference: Mengyang Gu and Jim Berger, 2016, Annals of Applied Statistics; Mengyang Gu, Xiaojing Wang and Jim Berger, 2018, Annals of Statistics.
Author: Mengyang Gu [aut, cre],
Jesus Palomo [aut],
James Berger [aut]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between RobustGaSP versions 0.5.7 dated 2019-06-05 and 0.6.0 dated 2020-07-09
CHANGELOG | 11 DESCRIPTION | 10 MD5 | 69 +- NAMESPACE | 7 R/RcppExports.R | 56 + R/functions.R | 106 +++ R/ppgasp.R | 369 +++++++++++-- R/predict.R | 153 ++++- R/rgasp.R | 395 +++++++++++-- R/simulate.R | 110 +++ R/structure.R | 28 build/partial.rdb |binary man/RobustGaSP-package.Rd | 6 man/Sample.rgasp.Rd | 14 man/euclidean_distance.Rd |only man/generate_predictive_mean_cov.Rd | 12 man/log_marginal_lik.Rd | 3 man/log_marginal_lik_deriv.Rd | 4 man/log_marginal_lik_deriv_ppgasp.Rd | 4 man/log_profile_lik.Rd |only man/log_profile_lik_deriv.Rd |only man/log_profile_lik_deriv_ppgasp.Rd |only man/log_profile_lik_ppgasp.Rd |only man/periodic_exp_deriv.Rd |only man/periodic_exp_funct.Rd |only man/periodic_gauss_deriv.Rd |only man/periodic_gauss_funct.Rd |only man/pow_exp_funct.Rd | 6 man/ppgasp-class.Rd | 2 man/ppgasp.Rd | 34 + man/pred_rgasp.Rd | 14 man/predict.ppgasp.Rd | 27 man/predict.rgasp.Rd | 36 + man/rgasp-class.Rd | 2 man/rgasp.Rd | 72 ++ man/separable_kernel.Rd | 3 man/simulate.rgasp.Rd | 13 src/RcppExports.cpp | 196 ++++++ src/functions.cpp | 988 ++++++++++++++++++++++++++++++++--- src/init.c | 70 +- 40 files changed, 2441 insertions(+), 379 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Blaise Melly [ctb] (Contributions to preprocessing code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Cleve Moler [ctb] (author of several linpack routines),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.55 dated 2020-04-01 and 5.61 dated 2020-07-09
DESCRIPTION | 11 +- MD5 | 25 +++--- NAMESPACE | 5 - R/boot.R | 87 +++++++++++++++++++++ R/quantreg.R | 198 +++++++++++++++++++++++++++++++++++++++----------- R/rqss.R | 5 - build/vignette.rds |binary inst/ChangeLog | 25 ++++++ man/boot.rq.pxy.Rd |only man/plot.rqs.Rd | 2 man/rq.Rd | 54 +++++++++---- man/rq.fit.conquer.Rd |only man/rq.fit.pfn.Rd | 4 - man/rq.fit.ppro.Rd |only man/summary.rq.Rd | 7 + 15 files changed, 344 insertions(+), 79 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'IRIS DMC MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISMustangMetrics versions 2.3.0 dated 2019-11-15 and 2.4.0 dated 2020-07-09
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++++----- NAMESPACE | 3 +++ R/ISPAQUtils.R | 33 +++++++++++++++++++++++++++++++++ R/maxRangeMetric.R |only R/sampleRateChannelMetric.R |only R/sampleRateRespMetric.R |only man/IRISMustangMetrics-package.Rd | 7 ++++++- man/getSingleValueMetrics.Rd | 2 +- man/maxRangeMetric.Rd |only man/sampleRateChannelMetric.Rd |only man/sampleRateRespMetric.Rd |only 12 files changed, 60 insertions(+), 12 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: Plotting, Smoothing and Growth Trait Extraction for Longitudinal
Data
Description: Assists in producing longitudinal or profile plots of measured
traits. These allow checks to be made for anomalous data and growth patterns
in the data to be explored. Smoothing of growth trends for individual plants
using smoothing splines is available for removing transient effects. There
are tools for diagnosing the adequacy of trait smoothing, either using this
package or other packages, such as those that fit nonlinear growth models.
A range of per-unit (pot, plant, plot) growth traits can be extracted from
longitudinal data, including single time-point smoothed trait values and
their growth rates, interval growth rates and other growth statistics, such
as maximum growth. The package is particularly suited to preparing data from
high-throughput phenotyping facilities, such as imaging data from a Lemna-Tec Scananalyzer 3D
(see <https://www.youtube.com/watch?v=MRAF_mAEa7E/> for more
information). The package 'growthPheno' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between growthPheno versions 1.0-22 dated 2020-03-18 and 1.0-26 dated 2020-07-09
DESCRIPTION | 20 ++++++------ MD5 | 44 ++++++++++++++------------- NAMESPACE | 1 R/dataCart_v2.r | 36 +++++++++++++--------- R/dataLongi_v9.r | 12 ++++--- build/partial.rdb |binary build/vignette.rds |binary data/RiceRaw.dat.rda |binary data/cart.dat.rda |binary data/exampleData.rda |binary data/tomato.dat.rda |binary inst/News.Rd | 18 +++++++++++ inst/doc/Rice.pdf |binary inst/doc/Rice.pdf.asis | 2 - inst/doc/Tomato.pdf |binary inst/doc/growthPheno-manual.pdf |binary man/growthPheno-pkg.Rd | 2 - man/plotMedianDeviations.Rd | 11 +++--- tests/testthat.R | 1 tests/testthat/data/0498_Rice_Plett_test.csv |only tests/testthat/testImportXL.r | 31 +++++++++++++++++++ tests/testthat/testProbeSmooth.r | 42 +++++++++++++++++++++++++ tests/testthat/testRiceNoPlots.r |only vignettes/Rice.pdf.asis | 2 - 24 files changed, 164 insertions(+), 58 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.5.6 dated 2020-04-20 and 0.7.0 dated 2020-07-09
broom-0.5.6/broom/R/base-data-frame-tidiers.R |only broom-0.5.6/broom/R/base-matrix-tidiers.R |only broom-0.5.6/broom/R/base-summary-tidiers.R |only broom-0.5.6/broom/R/base-vector-tidiers.R |only broom-0.5.6/broom/R/bootstrap.R |only broom-0.5.6/broom/R/brms-tidiers.R |only broom-0.5.6/broom/R/data-argument-glossary.R |only broom-0.5.6/broom/R/data-column-glossary.R |only broom-0.5.6/broom/R/dplyr-rowwise-df-tidiers.R |only broom-0.5.6/broom/R/lme4-tidiers.R |only broom-0.5.6/broom/R/mcmc-tidiers.R |only broom-0.5.6/broom/R/nlme-tidiers.R |only broom-0.5.6/broom/R/ordinal-tidiers.R |only broom-0.5.6/broom/R/rstanarm-tidiers.R |only broom-0.5.6/broom/R/speedglm-tidiers.R |only broom-0.5.6/broom/R/stats-tidiers.R |only broom-0.5.6/broom/data |only broom-0.5.6/broom/inst/doc/adding-tidiers.R |only broom-0.5.6/broom/inst/doc/kmeans.R |only broom-0.5.6/broom/inst/extdata |only broom-0.5.6/broom/man/argument_glossary.Rd |only broom-0.5.6/broom/man/brms_tidiers.Rd |only broom-0.5.6/broom/man/column_glossary.Rd |only broom-0.5.6/broom/man/emmeans_tidiers.Rd |only broom-0.5.6/broom/man/geeglm_tidiers.Rd |only broom-0.5.6/broom/man/insert_NAs.Rd |only broom-0.5.6/broom/man/lme4_tidiers.Rd |only broom-0.5.6/broom/man/matrix_tidiers.Rd |only broom-0.5.6/broom/man/mcmc_tidiers.Rd |only broom-0.5.6/broom/man/mgcv_glance_gam.Rd |only broom-0.5.6/broom/man/mgcv_tidy_gam.Rd |only broom-0.5.6/broom/man/nlme_tidiers.Rd |only broom-0.5.6/broom/man/ordinal_tidiers.Rd |only broom-0.5.6/broom/man/rowwise_df_tidiers.Rd |only broom-0.5.6/broom/man/rstanarm_tidiers.Rd |only broom-0.5.6/broom/tests/testthat/helper-tests.R |only broom-0.5.6/broom/tests/testthat/test-base.R |only broom-0.5.6/broom/tests/testthat/test-deprecating.R |only broom-0.5.6/broom/tests/testthat/test-speedglm.R |only broom-0.5.6/broom/tests/testthat/test-stats.R |only broom-0.7.0/broom/DESCRIPTION | 547 ++ broom-0.7.0/broom/LICENSE | 4 broom-0.7.0/broom/MD5 | 838 ++-- broom-0.7.0/broom/NAMESPACE | 561 +- broom-0.7.0/broom/NEWS.md | 996 +++-- broom-0.7.0/broom/R/aaa-documentation-helper.R |only broom-0.7.0/broom/R/aer-tidiers.R | 291 - broom-0.7.0/broom/R/auc-tidiers.R | 93 broom-0.7.0/broom/R/base-tidiers.R | 46 broom-0.7.0/broom/R/bbmle-tidiers.R | 88 broom-0.7.0/broom/R/betareg-tidiers.R | 219 - broom-0.7.0/broom/R/biglm-tidiers.R | 168 broom-0.7.0/broom/R/bingroup-tidiers.R | 224 - broom-0.7.0/broom/R/boot-tidiers.R | 239 - broom-0.7.0/broom/R/broom-package.R |only broom-0.7.0/broom/R/broom.R | 79 broom-0.7.0/broom/R/btergm-tidiers.R | 162 broom-0.7.0/broom/R/car-tidiers.R | 71 broom-0.7.0/broom/R/caret-tidiers.R | 255 - broom-0.7.0/broom/R/data-frame-tidiers.R |only broom-0.7.0/broom/R/deprecated-0-7-0.R |only broom-0.7.0/broom/R/drc-tidiers.R |only broom-0.7.0/broom/R/emmeans-tidiers.R | 362 + broom-0.7.0/broom/R/epiR-tidiers.R |only broom-0.7.0/broom/R/ergm-tidiers.R | 329 - broom-0.7.0/broom/R/fixest-tidiers.R |only broom-0.7.0/broom/R/gam-tidiers.R | 116 broom-0.7.0/broom/R/gamlss-tidiers.R | 97 broom-0.7.0/broom/R/gee.R |only broom-0.7.0/broom/R/geepack-tidiers.R | 246 - broom-0.7.0/broom/R/glmnet-cv-glmnet-tidiers.R | 208 - broom-0.7.0/broom/R/glmnet-glmnet-tidiers.R | 230 - broom-0.7.0/broom/R/gmm-tidiers.R | 266 - broom-0.7.0/broom/R/hmisc-tidiers.R | 128 broom-0.7.0/broom/R/joinerml-tidiers.R |only broom-0.7.0/broom/R/kendall-tidiers.R | 91 broom-0.7.0/broom/R/ks-tidiers.R | 128 broom-0.7.0/broom/R/lavaan-tidiers.R | 302 - broom-0.7.0/broom/R/leaps.R |only broom-0.7.0/broom/R/lfe-tidiers.R | 335 - broom-0.7.0/broom/R/list-irlba.R | 35 broom-0.7.0/broom/R/list-optim-tidiers.R | 121 broom-0.7.0/broom/R/list-svd-tidiers.R | 145 broom-0.7.0/broom/R/list-tidiers.R | 102 broom-0.7.0/broom/R/list-xyz-tidiers.R | 96 broom-0.7.0/broom/R/lm-beta-tidiers.R |only broom-0.7.0/broom/R/lmodel2-tidiers.R | 202 - broom-0.7.0/broom/R/lmtest-tidiers.R | 70 broom-0.7.0/broom/R/maps-tidiers.R | 81 broom-0.7.0/broom/R/mass-fitdistr-tidiers.R | 105 broom-0.7.0/broom/R/mass-polr-tidiers.R | 195 broom-0.7.0/broom/R/mass-ridgelm-tidiers.R | 185 broom-0.7.0/broom/R/mass-rlm-tidiers.R | 157 broom-0.7.0/broom/R/matrix-tidiers.R | 107 broom-0.7.0/broom/R/mclogit.R |only broom-0.7.0/broom/R/mclust-tidiers.R | 261 - broom-0.7.0/broom/R/mediate-tidiers.R |only broom-0.7.0/broom/R/mfx-tidiers.R |only broom-0.7.0/broom/R/mgcv-tidiers.R | 156 broom-0.7.0/broom/R/muhaz-tidiers.R | 104 broom-0.7.0/broom/R/multcomp-tidiers.R | 276 - broom-0.7.0/broom/R/nnet-tidiers.R | 239 - broom-0.7.0/broom/R/nobs.R |only broom-0.7.0/broom/R/null-and-default-tidiers.R | 86 broom-0.7.0/broom/R/orcutt-tidiers.R | 136 broom-0.7.0/broom/R/ordinal-clm-tidiers.R |only broom-0.7.0/broom/R/ordinal-clmm-tidiers.R |only broom-0.7.0/broom/R/pam-tidiers.R |only broom-0.7.0/broom/R/plm-tidiers.R | 191 broom-0.7.0/broom/R/polca-tidiers.R | 369 - broom-0.7.0/broom/R/psych-tidiers.R | 92 broom-0.7.0/broom/R/quantreg-nlrq-tidiers.R | 146 broom-0.7.0/broom/R/quantreg-rq-tidiers.R | 321 - broom-0.7.0/broom/R/quantreg-rqs-tidiers.R | 195 broom-0.7.0/broom/R/rma-tidiers.R |only broom-0.7.0/broom/R/robust-glmrob-tidiers.R |only broom-0.7.0/broom/R/robust-lmrob-tidiers.R |only broom-0.7.0/broom/R/robustbase-glmrob-tidiers.R |only broom-0.7.0/broom/R/robustbase-lmrob-tidiers.R |only broom-0.7.0/broom/R/scam-tidiers.R |only broom-0.7.0/broom/R/sp-tidiers.R | 220 - broom-0.7.0/broom/R/spdep-tidiers.R |only broom-0.7.0/broom/R/speedglm-speedglm-tidiers.R |only broom-0.7.0/broom/R/speedglm-speedlm-tidiers.R |only broom-0.7.0/broom/R/stats-anova-tidiers.R | 513 +- broom-0.7.0/broom/R/stats-arima-tidiers.R | 139 broom-0.7.0/broom/R/stats-decompose-tidiers.R | 232 - broom-0.7.0/broom/R/stats-factanal-tidiers.R | 319 - broom-0.7.0/broom/R/stats-glm-tidiers.R | 196 broom-0.7.0/broom/R/stats-htest-tidiers.R | 461 +- broom-0.7.0/broom/R/stats-kmeans-tidiers.R | 153 broom-0.7.0/broom/R/stats-lm-tidiers.R | 471 -- broom-0.7.0/broom/R/stats-loess-tidiers.R | 82 broom-0.7.0/broom/R/stats-mlm-tidiers.R |only broom-0.7.0/broom/R/stats-nls-tidiers.R | 227 - broom-0.7.0/broom/R/stats-prcomp-tidiers.R | 346 - broom-0.7.0/broom/R/stats-smooth.spline-tidiers.R | 112 broom-0.7.0/broom/R/stats-time-series-tidiers.R | 177 broom-0.7.0/broom/R/survey-tidiers.R | 163 broom-0.7.0/broom/R/survival-aareg-tidiers.R | 149 broom-0.7.0/broom/R/survival-cch-tidiers.R | 163 broom-0.7.0/broom/R/survival-coxph-tidiers.R | 352 - broom-0.7.0/broom/R/survival-pyears-tidiers.R | 155 broom-0.7.0/broom/R/survival-survdiff-tidiers.R | 168 broom-0.7.0/broom/R/survival-survexp-tidiers.R | 117 broom-0.7.0/broom/R/survival-survfit-tidiers.R | 262 - broom-0.7.0/broom/R/survival-survreg-tidiers.R | 230 - broom-0.7.0/broom/R/sysdata.rda |binary broom-0.7.0/broom/R/systemfit-tidiers.R |only broom-0.7.0/broom/R/tseries-tidiers.R | 156 broom-0.7.0/broom/R/utilities.R | 1041 ++--- broom-0.7.0/broom/R/zoo-tidiers.R | 95 broom-0.7.0/broom/R/zzz.R | 6 broom-0.7.0/broom/README.md | 254 - broom-0.7.0/broom/build/vignette.rds |binary broom-0.7.0/broom/inst/WORDLIST |only broom-0.7.0/broom/inst/doc/adding-tidiers.Rmd | 225 - broom-0.7.0/broom/inst/doc/adding-tidiers.html | 771 +-- broom-0.7.0/broom/inst/doc/available-methods.R | 46 broom-0.7.0/broom/inst/doc/available-methods.Rmd | 76 broom-0.7.0/broom/inst/doc/available-methods.html | 1981 +++++----- broom-0.7.0/broom/inst/doc/bootstrapping.R | 98 broom-0.7.0/broom/inst/doc/bootstrapping.Rmd | 162 broom-0.7.0/broom/inst/doc/bootstrapping.html | 731 +-- broom-0.7.0/broom/inst/doc/broom.R | 97 broom-0.7.0/broom/inst/doc/broom.Rmd | 353 - broom-0.7.0/broom/inst/doc/broom.html | 1184 +++-- broom-0.7.0/broom/inst/doc/broom_and_dplyr.R | 220 - broom-0.7.0/broom/inst/doc/broom_and_dplyr.Rmd | 355 - broom-0.7.0/broom/inst/doc/broom_and_dplyr.html | 1181 +++-- broom-0.7.0/broom/inst/doc/kmeans.Rmd | 157 broom-0.7.0/broom/inst/doc/kmeans.html | 744 +-- broom-0.7.0/broom/man/augment.Mclust.Rd | 54 broom-0.7.0/broom/man/augment.betamfx.Rd |only broom-0.7.0/broom/man/augment.betareg.Rd | 50 broom-0.7.0/broom/man/augment.clm.Rd |only broom-0.7.0/broom/man/augment.coxph.Rd | 72 broom-0.7.0/broom/man/augment.decomposed.ts.Rd | 59 broom-0.7.0/broom/man/augment.drc.Rd |only broom-0.7.0/broom/man/augment.factanal.Rd | 16 broom-0.7.0/broom/man/augment.felm.Rd | 60 broom-0.7.0/broom/man/augment.fixest.Rd |only broom-0.7.0/broom/man/augment.glm.Rd | 133 broom-0.7.0/broom/man/augment.glmRob.Rd |only broom-0.7.0/broom/man/augment.htest.Rd | 52 broom-0.7.0/broom/man/augment.ivreg.Rd | 36 broom-0.7.0/broom/man/augment.kmeans.Rd | 40 broom-0.7.0/broom/man/augment.lm.Rd | 131 broom-0.7.0/broom/man/augment.lmRob.Rd |only broom-0.7.0/broom/man/augment.loess.Rd | 62 broom-0.7.0/broom/man/augment.mfx.Rd |only broom-0.7.0/broom/man/augment.mjoint.Rd |only broom-0.7.0/broom/man/augment.nlrq.Rd | 48 broom-0.7.0/broom/man/augment.nls.Rd | 49 broom-0.7.0/broom/man/augment.pam.Rd |only broom-0.7.0/broom/man/augment.plm.Rd | 44 broom-0.7.0/broom/man/augment.poLCA.Rd | 102 broom-0.7.0/broom/man/augment.polr.Rd |only broom-0.7.0/broom/man/augment.prcomp.Rd | 14 broom-0.7.0/broom/man/augment.rlm.Rd | 114 broom-0.7.0/broom/man/augment.rma.Rd |only broom-0.7.0/broom/man/augment.robustbase.glmrob.Rd |only broom-0.7.0/broom/man/augment.robustbase.lmrob.Rd |only broom-0.7.0/broom/man/augment.rq.Rd | 43 broom-0.7.0/broom/man/augment.rqs.Rd | 49 broom-0.7.0/broom/man/augment.sarlm.Rd |only broom-0.7.0/broom/man/augment.smooth.spline.Rd | 24 broom-0.7.0/broom/man/augment.speedlm.Rd | 38 broom-0.7.0/broom/man/augment.stl.Rd | 14 broom-0.7.0/broom/man/augment.survreg.Rd | 60 broom-0.7.0/broom/man/augment_columns.Rd | 2 broom-0.7.0/broom/man/bootstrap.Rd | 28 broom-0.7.0/broom/man/broom.Rd | 151 broom-0.7.0/broom/man/confint_tidy.Rd | 25 broom-0.7.0/broom/man/data.frame_tidiers.Rd | 44 broom-0.7.0/broom/man/durbinWatsonTest_tidiers.Rd | 20 broom-0.7.0/broom/man/finish_glance.Rd | 31 broom-0.7.0/broom/man/fix_data_frame.Rd | 18 broom-0.7.0/broom/man/glance.Arima.Rd | 35 broom-0.7.0/broom/man/glance.Gam.Rd | 61 broom-0.7.0/broom/man/glance.Mclust.Rd | 62 broom-0.7.0/broom/man/glance.aareg.Rd | 38 broom-0.7.0/broom/man/glance.aov.Rd |only broom-0.7.0/broom/man/glance.betamfx.Rd |only broom-0.7.0/broom/man/glance.betareg.Rd | 33 broom-0.7.0/broom/man/glance.biglm.Rd | 51 broom-0.7.0/broom/man/glance.binDesign.Rd | 51 broom-0.7.0/broom/man/glance.cch.Rd | 60 broom-0.7.0/broom/man/glance.clm.Rd |only broom-0.7.0/broom/man/glance.clmm.Rd |only broom-0.7.0/broom/man/glance.coxph.Rd | 66 broom-0.7.0/broom/man/glance.cv.glmnet.Rd | 79 broom-0.7.0/broom/man/glance.drc.Rd |only broom-0.7.0/broom/man/glance.ergm.Rd | 17 broom-0.7.0/broom/man/glance.factanal.Rd | 72 broom-0.7.0/broom/man/glance.felm.Rd | 66 broom-0.7.0/broom/man/glance.fitdistr.Rd | 37 broom-0.7.0/broom/man/glance.fixest.Rd |only broom-0.7.0/broom/man/glance.garch.Rd | 27 broom-0.7.0/broom/man/glance.geeglm.Rd |only broom-0.7.0/broom/man/glance.glm.Rd | 40 broom-0.7.0/broom/man/glance.glmRob.Rd |only broom-0.7.0/broom/man/glance.glmnet.Rd | 54 broom-0.7.0/broom/man/glance.gmm.Rd | 92 broom-0.7.0/broom/man/glance.ivreg.Rd | 59 broom-0.7.0/broom/man/glance.kmeans.Rd | 45 broom-0.7.0/broom/man/glance.lavaan.Rd | 40 broom-0.7.0/broom/man/glance.lm.Rd | 106 broom-0.7.0/broom/man/glance.lmRob.Rd |only broom-0.7.0/broom/man/glance.lmodel2.Rd | 47 broom-0.7.0/broom/man/glance.mfx.Rd |only broom-0.7.0/broom/man/glance.mjoint.Rd |only broom-0.7.0/broom/man/glance.muhaz.Rd | 38 broom-0.7.0/broom/man/glance.multinom.Rd | 44 broom-0.7.0/broom/man/glance.nlrq.Rd | 29 broom-0.7.0/broom/man/glance.nls.Rd | 53 broom-0.7.0/broom/man/glance.orcutt.Rd | 49 broom-0.7.0/broom/man/glance.pam.Rd |only broom-0.7.0/broom/man/glance.plm.Rd | 51 broom-0.7.0/broom/man/glance.poLCA.Rd | 130 broom-0.7.0/broom/man/glance.polr.Rd |only broom-0.7.0/broom/man/glance.pyears.Rd | 44 broom-0.7.0/broom/man/glance.ridgelm.Rd | 50 broom-0.7.0/broom/man/glance.rlm.Rd | 34 broom-0.7.0/broom/man/glance.rma.Rd |only broom-0.7.0/broom/man/glance.robustbase.lmrob.Rd |only broom-0.7.0/broom/man/glance.rq.Rd | 29 broom-0.7.0/broom/man/glance.sarlm.Rd |only broom-0.7.0/broom/man/glance.smooth.spline.Rd | 34 broom-0.7.0/broom/man/glance.speedglm.Rd |only broom-0.7.0/broom/man/glance.speedlm.Rd | 53 broom-0.7.0/broom/man/glance.survdiff.Rd | 37 broom-0.7.0/broom/man/glance.survexp.Rd | 42 broom-0.7.0/broom/man/glance.survfit.Rd | 63 broom-0.7.0/broom/man/glance.survreg.Rd | 58 broom-0.7.0/broom/man/glance.svyglm.Rd |only broom-0.7.0/broom/man/glance.svyolr.Rd |only broom-0.7.0/broom/man/glance_optim.Rd | 29 broom-0.7.0/broom/man/list_tidiers.Rd | 2 broom-0.7.0/broom/man/metafor_tidiers.Rd |only broom-0.7.0/broom/man/null_tidiers.Rd | 2 broom-0.7.0/broom/man/reexports.Rd | 10 broom-0.7.0/broom/man/sp_tidiers.Rd | 2 broom-0.7.0/broom/man/sparse_tidiers.Rd | 21 broom-0.7.0/broom/man/summary_tidiers.Rd | 32 broom-0.7.0/broom/man/tidy.Arima.Rd | 24 broom-0.7.0/broom/man/tidy.Gam.Rd | 64 broom-0.7.0/broom/man/tidy.Kendall.Rd | 25 broom-0.7.0/broom/man/tidy.Mclust.Rd | 45 broom-0.7.0/broom/man/tidy.TukeyHSD.Rd | 25 broom-0.7.0/broom/man/tidy.aareg.Rd | 32 broom-0.7.0/broom/man/tidy.acf.Rd | 21 broom-0.7.0/broom/man/tidy.anova.Rd | 29 broom-0.7.0/broom/man/tidy.aov.Rd | 16 broom-0.7.0/broom/man/tidy.aovlist.Rd | 26 broom-0.7.0/broom/man/tidy.betamfx.Rd |only broom-0.7.0/broom/man/tidy.betareg.Rd | 46 broom-0.7.0/broom/man/tidy.biglm.Rd | 77 broom-0.7.0/broom/man/tidy.binDesign.Rd | 35 broom-0.7.0/broom/man/tidy.binWidth.Rd | 42 broom-0.7.0/broom/man/tidy.boot.Rd | 74 broom-0.7.0/broom/man/tidy.btergm.Rd | 39 broom-0.7.0/broom/man/tidy.cch.Rd | 46 broom-0.7.0/broom/man/tidy.cld.Rd | 38 broom-0.7.0/broom/man/tidy.clm.Rd |only broom-0.7.0/broom/man/tidy.clmm.Rd |only broom-0.7.0/broom/man/tidy.coeftest.Rd | 41 broom-0.7.0/broom/man/tidy.confint.glht.Rd | 40 broom-0.7.0/broom/man/tidy.confusionMatrix.Rd | 75 broom-0.7.0/broom/man/tidy.coxph.Rd | 32 broom-0.7.0/broom/man/tidy.cv.glmnet.Rd | 124 broom-0.7.0/broom/man/tidy.density.Rd | 26 broom-0.7.0/broom/man/tidy.dist.Rd | 36 broom-0.7.0/broom/man/tidy.drc.Rd |only broom-0.7.0/broom/man/tidy.emmGrid.Rd |only broom-0.7.0/broom/man/tidy.epi.2by2.Rd |only broom-0.7.0/broom/man/tidy.ergm.Rd | 7 broom-0.7.0/broom/man/tidy.factanal.Rd | 51 broom-0.7.0/broom/man/tidy.felm.Rd | 92 broom-0.7.0/broom/man/tidy.fitdistr.Rd | 18 broom-0.7.0/broom/man/tidy.fixest.Rd |only broom-0.7.0/broom/man/tidy.ftable.Rd | 31 broom-0.7.0/broom/man/tidy.gamlss.Rd | 30 broom-0.7.0/broom/man/tidy.garch.Rd | 23 broom-0.7.0/broom/man/tidy.geeglm.Rd |only broom-0.7.0/broom/man/tidy.glht.Rd | 61 broom-0.7.0/broom/man/tidy.glm.Rd | 61 broom-0.7.0/broom/man/tidy.glmRob.Rd |only broom-0.7.0/broom/man/tidy.glmnet.Rd | 76 broom-0.7.0/broom/man/tidy.gmm.Rd | 168 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broom-0.7.0/broom/tests/testthat/test-betareg.R | 103 broom-0.7.0/broom/tests/testthat/test-biglm.R | 72 broom-0.7.0/broom/tests/testthat/test-bingroup.R | 67 broom-0.7.0/broom/tests/testthat/test-boot.R | 104 broom-0.7.0/broom/tests/testthat/test-btergm.R | 91 broom-0.7.0/broom/tests/testthat/test-car.R | 93 broom-0.7.0/broom/tests/testthat/test-caret.R | 79 broom-0.7.0/broom/tests/testthat/test-cluster.R |only broom-0.7.0/broom/tests/testthat/test-drc.R |only broom-0.7.0/broom/tests/testthat/test-emmeans.R | 185 broom-0.7.0/broom/tests/testthat/test-epiR.R |only broom-0.7.0/broom/tests/testthat/test-ergm.R | 86 broom-0.7.0/broom/tests/testthat/test-fixest.R |only broom-0.7.0/broom/tests/testthat/test-gam.R | 58 broom-0.7.0/broom/tests/testthat/test-gamlss.R | 70 broom-0.7.0/broom/tests/testthat/test-gee.R |only broom-0.7.0/broom/tests/testthat/test-geepack.R | 73 broom-0.7.0/broom/tests/testthat/test-glmnet.R | 172 broom-0.7.0/broom/tests/testthat/test-glmnetUtils.R |only 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broom-0.7.0/broom/tests/testthat/test-mass-polr.R | 98 broom-0.7.0/broom/tests/testthat/test-mass-ridgelm.R | 58 broom-0.7.0/broom/tests/testthat/test-mass-rlm.R | 84 broom-0.7.0/broom/tests/testthat/test-mclogit.R |only broom-0.7.0/broom/tests/testthat/test-mclust.R | 143 broom-0.7.0/broom/tests/testthat/test-mediate.R |only broom-0.7.0/broom/tests/testthat/test-mfx.R |only broom-0.7.0/broom/tests/testthat/test-mgcv.R | 53 broom-0.7.0/broom/tests/testthat/test-muhaz.R | 58 broom-0.7.0/broom/tests/testthat/test-multcomp.R | 102 broom-0.7.0/broom/tests/testthat/test-nnet.R | 51 broom-0.7.0/broom/tests/testthat/test-null-and-default.R | 97 broom-0.7.0/broom/tests/testthat/test-orcutt.R | 69 broom-0.7.0/broom/tests/testthat/test-ordinal.R | 158 broom-0.7.0/broom/tests/testthat/test-pam.R |only broom-0.7.0/broom/tests/testthat/test-plm.R | 86 broom-0.7.0/broom/tests/testthat/test-polca.R | 81 broom-0.7.0/broom/tests/testthat/test-psych.R | 44 broom-0.7.0/broom/tests/testthat/test-quantreg-nlrq.R | 109 broom-0.7.0/broom/tests/testthat/test-quantreg-rq.R | 131 broom-0.7.0/broom/tests/testthat/test-quantreg-rqs.R | 114 broom-0.7.0/broom/tests/testthat/test-rma.R |only broom-0.7.0/broom/tests/testthat/test-robust.R |only broom-0.7.0/broom/tests/testthat/test-robustbase.R |only broom-0.7.0/broom/tests/testthat/test-sp.R | 196 broom-0.7.0/broom/tests/testthat/test-spdep.R |only broom-0.7.0/broom/tests/testthat/test-speedglm-speedglm.R |only broom-0.7.0/broom/tests/testthat/test-speedglm-speedlm.R |only broom-0.7.0/broom/tests/testthat/test-stats-anova.R | 161 broom-0.7.0/broom/tests/testthat/test-stats-arima.R | 71 broom-0.7.0/broom/tests/testthat/test-stats-decompose.R | 49 broom-0.7.0/broom/tests/testthat/test-stats-factanal.R | 186 broom-0.7.0/broom/tests/testthat/test-stats-glm.R | 128 broom-0.7.0/broom/tests/testthat/test-stats-htest.R | 233 - broom-0.7.0/broom/tests/testthat/test-stats-kmeans.R | 99 broom-0.7.0/broom/tests/testthat/test-stats-lm.R | 211 - broom-0.7.0/broom/tests/testthat/test-stats-loess.R | 31 broom-0.7.0/broom/tests/testthat/test-stats-mlm.R |only broom-0.7.0/broom/tests/testthat/test-stats-nls.R | 100 broom-0.7.0/broom/tests/testthat/test-stats-prcomp.R | 145 broom-0.7.0/broom/tests/testthat/test-stats-smooth.spline.R | 46 broom-0.7.0/broom/tests/testthat/test-stats-time-series.R | 71 broom-0.7.0/broom/tests/testthat/test-survey.R | 81 broom-0.7.0/broom/tests/testthat/test-survival-aareg.R | 90 broom-0.7.0/broom/tests/testthat/test-survival-cch.R | 73 broom-0.7.0/broom/tests/testthat/test-survival-coxph.R | 111 broom-0.7.0/broom/tests/testthat/test-survival-pyears.R | 83 broom-0.7.0/broom/tests/testthat/test-survival-survdiff.R | 120 broom-0.7.0/broom/tests/testthat/test-survival-survexp.R | 66 broom-0.7.0/broom/tests/testthat/test-survival-survfit.R | 95 broom-0.7.0/broom/tests/testthat/test-survival-survreg.R | 108 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Title: Gathering Metadata About Publications, Grants, Clinical Trials
from 'PubMed' Database
Description: A set of tools to extract bibliographic content from 'PubMed' database using 'NCBI' REST API <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
Author: Massimo Aria [aut, cre] (<https://orcid.org/0000-0002-8517-9411>)
Maintainer: Massimo Aria <massimo.aria@gmail.com>
Diff between pubmedR versions 0.0.2 dated 2020-04-03 and 0.0.3 dated 2020-07-09
DESCRIPTION | 8 MD5 | 12 R/pmApi2df.R | 377 +++++++------- build/vignette.rds |binary inst/doc/A_Brief_Example.Rmd | 782 ++++++++++++++--------------- inst/doc/A_Brief_Example.html | 1096 +++++++++++++++++++++--------------------- vignettes/A_Brief_Example.Rmd | 782 ++++++++++++++--------------- 7 files changed, 1531 insertions(+), 1526 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrGraph versions 1.0.1 dated 2020-06-02 and 1.0.2 dated 2020-07-09
wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.R |only wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.Rmd |only wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.html |only wrGraph-1.0.1/wrGraph/vignettes/wrGraphVignette1.Rmd |only wrGraph-1.0.2/wrGraph/DESCRIPTION | 10 wrGraph-1.0.2/wrGraph/MD5 | 50 +-- wrGraph-1.0.2/wrGraph/NAMESPACE | 1 wrGraph-1.0.2/wrGraph/R/MAplotW.R | 266 +++++++++---------- wrGraph-1.0.2/wrGraph/R/checkForLegLoc.R | 106 +++++-- wrGraph-1.0.2/wrGraph/R/convertPlotCoordPix.R | 7 wrGraph-1.0.2/wrGraph/R/cumFrqPlot.R | 6 wrGraph-1.0.2/wrGraph/R/legendHist.R | 3 wrGraph-1.0.2/wrGraph/R/plotBy2Groups.R | 7 wrGraph-1.0.2/wrGraph/R/plotLinReg.R |only wrGraph-1.0.2/wrGraph/R/plotPCAw.R | 66 ++-- wrGraph-1.0.2/wrGraph/R/staggerdCountsPlot.R | 4 wrGraph-1.0.2/wrGraph/R/vioplotW.R | 240 +++++++++-------- wrGraph-1.0.2/wrGraph/build/vignette.rds |binary wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.R |only wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.Rmd |only wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.html |only wrGraph-1.0.2/wrGraph/man/MAplotW.Rd | 23 - wrGraph-1.0.2/wrGraph/man/checkForLegLoc.Rd | 32 +- wrGraph-1.0.2/wrGraph/man/convertPlotCoordPix.Rd | 7 wrGraph-1.0.2/wrGraph/man/cumFrqPlot.Rd | 6 wrGraph-1.0.2/wrGraph/man/legendHist.Rd | 3 wrGraph-1.0.2/wrGraph/man/plotLinReg.Rd |only wrGraph-1.0.2/wrGraph/man/plotPCAw.Rd | 19 - wrGraph-1.0.2/wrGraph/man/staggerdCountsPlot.Rd | 4 wrGraph-1.0.2/wrGraph/man/vioplotW.Rd | 57 +--- wrGraph-1.0.2/wrGraph/vignettes/wrGraphVignette2.Rmd |only 31 files changed, 509 insertions(+), 408 deletions(-)
Title: Tools for Handling and Scraping Instant Weather Forecast Feeds
Description: Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Author: Stan Yip [aut, cre]
Maintainer: Stan Yip <stanyip101@gmail.com>
Diff between weatherr versions 0.1.2 dated 2015-09-08 and 0.1.3 dated 2020-07-09
DESCRIPTION | 10 +++++----- INDEX |only MD5 | 11 ++++++----- R/ggele.R | 4 ++-- R/locationforecast.R | 8 ++++---- man/ggele.Rd | 4 +++- man/locationforecast.Rd | 5 ++++- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.0.8 dated 2020-06-04 and 1.1.0 dated 2020-07-09
jsmodule-1.0.8/jsmodule/man/logisticModule.Rd |only jsmodule-1.0.8/jsmodule/man/regressModule.Rd |only jsmodule-1.1.0/jsmodule/DESCRIPTION | 10 jsmodule-1.1.0/jsmodule/MD5 | 35 - jsmodule-1.1.0/jsmodule/NAMESPACE | 4 jsmodule-1.1.0/jsmodule/NEWS.md | 6 jsmodule-1.1.0/jsmodule/R/coxph.R | 61 + jsmodule-1.1.0/jsmodule/R/jsPropensityGadget.R | 2 jsmodule-1.1.0/jsmodule/R/regress.R | 598 +++---------------- jsmodule-1.1.0/jsmodule/R/roc.R | 16 jsmodule-1.1.0/jsmodule/R/timeroc.R | 4 jsmodule-1.1.0/jsmodule/build/vignette.rds |binary jsmodule-1.1.0/jsmodule/inst/doc/jsmodule.html | 20 jsmodule-1.1.0/jsmodule/man/ROC_table.Rd | 2 jsmodule-1.1.0/jsmodule/man/jsPropensityExtAddin.Rd | 2 jsmodule-1.1.0/jsmodule/man/rocModule.Rd | 62 - jsmodule-1.1.0/jsmodule/man/rocModule2.Rd |only jsmodule-1.1.0/jsmodule/man/survIDINRI_helper.Rd | 2 jsmodule-1.1.0/jsmodule/man/timeROC_table.Rd | 2 jsmodule-1.1.0/jsmodule/tests/testthat/test-module.R | 12 20 files changed, 244 insertions(+), 594 deletions(-)
Title: Generalized Linear Mixed Models with Robust Random Fields for
Spatiotemporal Modeling
Description: Implements Bayesian spatial and spatiotemporal
models that optionally allow for extreme spatial deviations through
time. 'glmmfields' uses a predictive process approach with random
fields implemented through a multivariate-t distribution instead of
the usual multivariate normal. Sampling is conducted with 'Stan'.
References: Anderson and Ward (2019) <doi:10.1002/ecy.2403>.
Author: Sean C. Anderson [aut, cre],
Eric J. Ward [aut],
Trustees of Columbia University [cph]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Diff between glmmfields versions 0.1.3 dated 2019-05-18 and 0.1.4 dated 2020-07-09
DESCRIPTION | 56 ++--- MD5 | 44 ++-- NEWS.md | 4 R/fitting.R | 4 R/glmmfields-package.R | 4 R/methods.R | 2 R/predict.R | 4 R/sim.R | 2 build/vignette.rds |binary inst/doc/spatial-glms.R | 26 +- inst/doc/spatial-glms.html | 284 +++++++++++++++------------ man/format_data.Rd | 17 + man/glmmfields.Rd | 44 ++-- man/loo.Rd | 2 man/plot.glmmfields.Rd | 8 man/predict.Rd | 15 + man/sim_glmmfields.Rd | 24 +- man/stan_pars.Rd | 10 tests/testthat/test-fit-ar-processes.R | 56 ++--- tests/testthat/test-fit-basic.R | 26 +- tests/testthat/test-fit-observation-models.R | 24 +- tests/testthat/test-fit-with-predictors.R | 8 tests/testthat/test-stations.R | 2 23 files changed, 387 insertions(+), 279 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.17.0 dated 2020-04-18 and 1.18.0 dated 2020-07-09
DESCRIPTION | 8 MD5 | 135 ++++++------- NAMESPACE | 5 NEWS | 94 +++++++-- R/ClusterFuture-class.R | 77 +++++-- R/ConstantFuture-class.R | 10 R/Future-class.R | 10 R/FutureCondition-class.R | 8 R/FutureResult-class.R | 6 R/MulticoreFuture-class.R | 24 +- R/MultiprocessFuture-class.R | 5 R/MultisessionFuture-class.R | 12 - R/UniprocessFuture-class.R | 5 R/availableCores.R | 3 R/future.R | 33 +-- R/futureAssign.R | 3 R/globals.R | 33 ++- R/makeClusterMPI.R | 13 - R/makeClusterPSOCK.R | 109 ++++++++-- R/multiprocess.R | 10 R/multisession.R | 1 R/options.R | 26 +- R/signalConditions.R | 6 R/utils.R | 2 R/zzz.plan.R | 45 ++-- build/vignette.rds |binary demo/mandelbrot.R | 2 inst/WORDLIST | 126 +++++++++++- inst/doc/future-1-overview.html | 115 +++++------ inst/doc/future-1-overview.md.rsp | 115 +++++------ inst/doc/future-2-output.html | 12 - inst/doc/future-2-output.md.rsp | 12 - inst/doc/future-3-topologies.html | 38 +-- inst/doc/future-3-topologies.md.rsp | 38 +-- inst/doc/future-4-issues.html | 4 inst/doc/future-4-issues.md.rsp | 4 inst/doc/future-4-non-exportable-objects.html | 33 +++ inst/doc/future-4-non-exportable-objects.md.rsp | 31 ++ inst/doc/future-5-startup.html | 12 - inst/doc/future-5-startup.md.rsp | 12 - inst/doc/future-6-future-api-backend-specification.html |only inst/doc/future-6-future-api-backend-specification.md.rsp |only inst/vignettes-static/future-1-overview.md.rsp.rsp | 49 ++-- man/Future-class.Rd | 2 man/FutureResult.Rd | 6 man/MulticoreFuture-class.Rd | 4 man/autoStopCluster.Rd | 2 man/availableCores.Rd | 3 man/future.Rd | 5 man/future.options.Rd | 26 +- man/getExpression.Rd | 2 man/getGlobalsAndPackages.Rd | 7 man/makeClusterMPI.Rd | 7 man/makeClusterPSOCK.Rd | 30 ++ man/multiprocess.Rd | 11 - man/nbrOfWorkers.Rd | 2 man/nullcon.Rd | 2 man/signalConditions.Rd | 6 tests/cluster-missing-future-pkg.R | 18 - tests/cluster.R | 27 ++ tests/future.R | 14 - tests/incl/start,load-only.R | 2 tests/whichIndex.R | 2 vignettes/future-1-overview.md.rsp | 115 +++++------ vignettes/future-2-output.md.rsp | 12 - vignettes/future-3-topologies.md.rsp | 38 +-- vignettes/future-4-issues.md.rsp | 4 vignettes/future-4-non-exportable-objects.md.rsp | 31 ++ vignettes/future-5-startup.md.rsp | 12 - vignettes/future-6-future-api-backend-specification.md.rsp |only 70 files changed, 1105 insertions(+), 571 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z (2007) <doi:10.1177/1536867X0700700203> ). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between chest versions 0.3.1 dated 2020-01-29 and 0.3.2 dated 2020-07-09
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- NEWS.md | 5 ++++- R/chest_cox.R | 2 +- build/vignette.rds |binary inst/doc/chest-vignette.html | 16 ++++++++++++++++ man/diab_df.Rd | 6 ++++-- 8 files changed, 38 insertions(+), 17 deletions(-)
Title: Effect Estimates from All Models
Description: Estimates and plots effect estimates from models with all possible
combinations of a list of variables. It can be used for assessing treatment
effects in clinical trials or risk factors in bio-medical and epidemiological
research. Like Stata command 'confall' (Wang Z (2007) <doi:10.1177/1536867X0700700203> ),
'allestimates' calculates and stores all effect estimates, and plots them against p values or
Akaike information criterion (AIC) values. It currently has functions for linear
regression: all_lm(), logistic and Poisson regression: all_glm() and all_speedglm(),
and Cox proportional hazards regression: all_cox().
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between allestimates versions 0.1.6 dated 2020-02-05 and 0.1.7 dated 2020-07-09
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 3 +++ R/all_cox.R | 2 +- build/vignette.rds |binary inst/doc/allestimates-vignette.html | 16 ++++++++++++++++ man/diab_df.Rd | 6 ++++-- 7 files changed, 36 insertions(+), 15 deletions(-)
Title: A 'shiny' Module for Reading Excel Sheets
Description: This is a shiny module that presents a file picker user interface to get an Excel file name, and reads the Excel sheets using 'readxl' package and returns the resulting sheet(s) as a vector and data in dataframe(s).
Author: Yadu Balehosur <yadu@vizualytics.com>
Maintainer: Yadu Balehosur <yadu@vizualytics.com>
Diff between modgetxl versions 0.3 dated 2020-06-28 and 0.4 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 5 ++--- R/xl.R | 18 +++++++----------- R/xlex.R | 3 ++- man/xlex.Rd | 3 ++- 6 files changed, 22 insertions(+), 25 deletions(-)
Title: Accelerated Bayesian Analytics with DAGs
Description: Accelerate Bayesian analytics workflows in 'R' through interactive modelling,
visualization, and inference. Define probabilistic graphical models using directed
acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians,
and programmers. This package relies on the sleek and elegant 'greta' package for
Bayesian inference. 'greta', in turn, is an interface into 'TensorFlow' from 'R'.
Install 'greta' using instructions available here: <http://causact.com/install-greta.html>.
See <http://github.com/flyaflya/causact> or <http://causact.com> for more documentation.
Author: Adam Fleischhacker [aut, cre, cph],
Daniela Dapena [ctb],
Rose Nguyen [ctb],
Jared Sharpe [ctb]
Maintainer: Adam Fleischhacker <ajf@udel.edu>
Diff between causact versions 0.3.1 dated 2020-06-24 and 0.3.2 dated 2020-07-09
DESCRIPTION | 17 +++++++++-------- MD5 | 18 +++++++++++++----- NEWS.md | 16 +++++++--------- R/dag_diagrammer.R | 5 ++--- R/dag_greta.R | 16 ++++++++++++++-- README.md | 49 ++++++++++++++++++++++++++++--------------------- man/figures |only 7 files changed, 73 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-25 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-25 0.0.2.0
2020-01-17 0.0.1.1
2019-07-06 0.0.1.0
2019-02-08 0.0.0.9