Title: Keyword Assisted Topic Model
Description: Fits keyword assisted topic models (keyATM) using collapsed Gibbs samplers. The keyATM combines the latent dirichlet allocation (LDA) models with a small number of keywords selected by researchers in order to improve the interpretability and topic classification of the LDA. The keyATM can also incorporate covariates and directly model time trends. The keyATM is proposed in Eshima, Imai, and Sasaki (2020) <arXiv:2004.05964>.
Author: Shusei Eshima [aut, cre] (<https://orcid.org/0000-0003-3613-4046>),
Tomoya Sasaki [aut],
William Lowe [ctb],
Kosuke Imai [aut],
Chung-hong Chan [ctb] (<https://orcid.org/0000-0002-6232-7530>)
Maintainer: Shusei Eshima <shuseieshima@g.harvard.edu>
Diff between keyATM versions 0.2.2 dated 2020-06-02 and 0.3.0 dated 2020-07-12
keyATM-0.2.2/keyATM/tests/testthat/test-keyATM.R |only keyATM-0.3.0/keyATM/DESCRIPTION | 14 keyATM-0.3.0/keyATM/MD5 | 84 +- keyATM-0.3.0/keyATM/NAMESPACE | 4 keyATM-0.3.0/keyATM/NEWS.md | 30 - keyATM-0.3.0/keyATM/R/RcppExports.R | 5 keyATM-0.3.0/keyATM/R/data.R | 2 keyATM-0.3.0/keyATM/R/keyATM-package.R | 2 keyATM-0.3.0/keyATM/R/keyATM.R | 80 -- keyATM-0.3.0/keyATM/R/keyATMvb.R | 20 keyATM-0.3.0/keyATM/R/model.R | 43 - keyATM-0.3.0/keyATM/R/plots.R | 109 ++- keyATM-0.3.0/keyATM/R/posterior.R | 291 ++++------ keyATM-0.3.0/keyATM/R/predict.R |only keyATM-0.3.0/keyATM/R/utils.R | 102 +++ keyATM-0.3.0/keyATM/man/by_strata_DocTopic.Rd | 23 keyATM-0.3.0/keyATM/man/by_strata_TopicWord.Rd | 8 keyATM-0.3.0/keyATM/man/covariates_info.Rd | 2 keyATM-0.3.0/keyATM/man/keyATM-package.Rd | 1 keyATM-0.3.0/keyATM/man/keyATM.Rd | 14 keyATM-0.3.0/keyATM/man/keyATM_output.Rd | 2 keyATM-0.3.0/keyATM/man/keyATM_read.Rd | 4 keyATM-0.3.0/keyATM/man/plot.strata_doctopic.Rd | 20 keyATM-0.3.0/keyATM/man/plot_alpha.Rd | 2 keyATM-0.3.0/keyATM/man/plot_modelfit.Rd | 4 keyATM-0.3.0/keyATM/man/plot_pi.Rd | 19 keyATM-0.3.0/keyATM/man/plot_timetrend.Rd | 20 keyATM-0.3.0/keyATM/man/predict.keyATM_output.Rd |only keyATM-0.3.0/keyATM/man/read_dfm_cpp.Rd | 4 keyATM-0.3.0/keyATM/man/read_keywords.Rd |only keyATM-0.3.0/keyATM/man/save.keyATM_output.Rd | 4 keyATM-0.3.0/keyATM/man/save_fig.Rd | 6 keyATM-0.3.0/keyATM/man/top_docs.Rd | 4 keyATM-0.3.0/keyATM/man/top_topics.Rd | 4 keyATM-0.3.0/keyATM/man/top_words.Rd | 2 keyATM-0.3.0/keyATM/man/values_fig.Rd | 2 keyATM-0.3.0/keyATM/man/weightedLDA.Rd | 14 keyATM-0.3.0/keyATM/src/RcppExports.cpp | 9 keyATM-0.3.0/keyATM/src/read.cpp | 11 keyATM-0.3.0/keyATM/tests/testthat/test-Initialization.R | 68 ++ keyATM-0.3.0/keyATM/tests/testthat/test-keyATMBase.R |only keyATM-0.3.0/keyATM/tests/testthat/test-keyATMCov.R |only keyATM-0.3.0/keyATM/tests/testthat/test-keyATMDynamic.R |only keyATM-0.3.0/keyATM/tests/testthat/test-keyATMHeterogeneity.R | 9 keyATM-0.3.0/keyATM/tests/testthat/test-plot.R | 46 + keyATM-0.3.0/keyATM/tests/testthat/test-read_keywords.R |only keyATM-0.3.0/keyATM/tests/testthat/test-weightedLDA.R | 2 47 files changed, 628 insertions(+), 462 deletions(-)
Title: Spatial Data Framework for ggplot2
Description: Spatial data plus the power of the ggplot2 framework means easier mapping when input
data are already in the form of spatial objects.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Brent Thorne [ctb] (<https://orcid.org/0000-0002-1099-3857>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between ggspatial versions 1.1.3 dated 2020-06-09 and 1.1.4 dated 2020-07-12
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/layer-spatial-raster.R | 30 +++++++++++++++++++----------- R/layer-spatial-stars.R | 11 ++++++++--- man/annotation_map_tile.Rd | 2 +- man/fixed_plot_aspect.Rd | 2 +- man/geom_spatial_rect.Rd | 4 ++-- man/geom_spatial_segment.Rd | 4 ++-- man/layer_spatial.Raster.Rd | 4 ++-- man/layer_spatial.Rd | 2 +- man/layer_spatial.bbox.Rd | 4 ++-- man/layer_spatial.stars.Rd | 2 +- man/reexports.Rd | 2 +- man/stat_spatial_identity.Rd | 2 +- 14 files changed, 58 insertions(+), 45 deletions(-)
Title: React Helpers
Description: Make it easy to use 'React' in R with 'htmlwidget' scaffolds,
helper dependency functions, an embedded 'Babel' 'transpiler',
and examples.
Author: Facebook Inc [aut, cph] (React library in lib,
https://facebook.github.io/react; see AUTHORS for full list of
contributors),
Michel Weststrate [aut, cph] (mobx library in lib,
https://github.com/mobxjs),
Kent Russell [aut, cre] (R interface),
Alan Dipert [aut] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.4.2 dated 2020-01-24 and 0.4.3 dated 2020-07-12
DESCRIPTION | 10 - MD5 | 34 ++-- NAMESPACE | 2 NEWS.md | 8 inst/doc/intro_htmlwidgets.R | 22 +- inst/doc/intro_htmlwidgets.html | 271 +++++++++++++++++--------------- inst/doc/intro_inputs.R | 10 - inst/doc/intro_inputs.html | 163 ++++++++++--------- inst/doc/intro_reactR.R | 2 inst/doc/intro_reactR.html | 97 ++++++----- inst/examples/office-fabric.R | 6 inst/www/react-tools/react-tools.js | 179 ++++++++++++--------- inst/www/react-tools/react-tools.js.map | 2 man/React.Rd | 4 man/babel_transform.Rd | 46 ++--- man/createReactShinyInput.Rd | 110 ++++++------ man/html_dependency_corejs.Rd | 26 +-- man/html_dependency_reacttools.Rd | 26 +-- 18 files changed, 554 insertions(+), 464 deletions(-)
Title: Loading Screen for 'Shiny'
Description: Full screen and partial loading screens for 'Shiny' with spinners, progress bars, and notifications.
Author: John Coene [aut, cre],
Jinhwan Kim [ctb]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between waiter versions 0.1.0 dated 2020-01-14 and 0.1.2 dated 2020-07-12
DESCRIPTION | 28 + MD5 | 70 ++- NAMESPACE | 9 NEWS.md | 26 + R/hostess.R | 8 R/spinners.R | 692 ++++++++++++++++++++++++------------- R/utils-pipe.R | 2 R/utils.R | 83 ++++ R/waiter.R | 212 +++++++++-- R/waitress.R | 2 R/zzz.R | 24 + README.md | 32 - build |only inst/assets/waiter/custom.css |only inst/assets/waiter/custom.js | 4 inst/assets/waiter/devloop.css | 14 inst/assets/waiter/please-wait.css | 12 inst/assets/waiter/waiter.js | 17 inst/doc |only man/butler.Rd | 10 man/butlerClass.Rd | 7 man/construct.Rd |only man/dot-check_session.Rd |only man/dot-random_name.Rd | 5 man/dot-theme_or_value.Rd |only man/garcon.Rd | 17 man/get_spinner_dependencies.Rd |only man/hostess.Rd | 23 - man/hostessLoader.Rd | 24 - man/kit.Rd |only man/pipe.Rd | 2 man/preview_spinner.Rd |only man/spinners.Rd | 15 man/themes_to_js.Rd |only man/transparent.Rd |only man/waiter.Rd | 37 + man/waiterClass.Rd | 12 man/waiterOptionInternal.Rd |only man/waiterTheme.Rd |only man/waitress.Rd | 6 man/waitressClass.Rd | 21 - vignettes |only 42 files changed, 1004 insertions(+), 410 deletions(-)
Title: Meta-Analysis of Significance Values
Description: The canonical way to perform meta-analysis involves using effect sizes.
When they are not available this package provides a number of methods for
meta-analysis of significance values including the methods of Edgington, Fisher,
Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results;
and a routine for graphical display.
Author: Michael Dewey [aut, cre] (<https://orcid.org/0000-0002-7522-3677>)
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between metap versions 1.3 dated 2020-01-23 and 1.4 dated 2020-07-12
DESCRIPTION | 12 +++++----- MD5 | 57 +++++++++++++++++++++++++------------------------- NAMESPACE | 1 NEWS | 9 +++++++ R/votep.R | 15 +++++++++---- build/metap.pdf |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/compare.Rnw | 4 +-- inst/doc/compare.pdf |binary inst/doc/metap.pdf |binary man/allmetap.Rd | 4 +-- man/invchisq.Rd | 10 ++++---- man/invt.Rd | 8 +++---- man/logitp.Rd | 12 +++++----- man/macros/macros.Rd | 8 +++---- man/meanp.Rd | 9 ++++--- man/meanz.Rd | 22 +++++++++---------- man/metap-package.Rd | 13 +++++------ man/package-data.Rd | 16 +++++++------- man/plotp.Rd | 8 +++---- man/schweder.Rd | 16 +++++++------- man/sumlog.Rd | 10 ++++---- man/sump.Rd | 17 +++++++------- man/sumz.Rd | 17 +++++++------- man/truncated.Rd | 20 +++++++---------- man/two2one.Rd | 13 ++++++----- man/votep.Rd | 24 +++++++++------------ man/wilkinsonp.Rd | 22 +++++++++---------- vignettes/compare.Rnw | 4 +-- 30 files changed, 183 insertions(+), 168 deletions(-)
Title: Historical Retail Data from the 'Trundler' API
Description: A wrapper around the 'Trundler' API, which gives access to
historical retail product and pricing data, and can be found at
<https://api.trundler.dev/>.
Author: Andrew B. Collier [aut, cre],
Megan Beckett [aut, pbl]
Maintainer: Andrew B. Collier <andrew@exegetic.biz>
Diff between trundler versions 0.1.15 dated 2020-07-11 and 0.1.16 dated 2020-07-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/product.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z (2007) <doi:10.1177/1536867X0700700203> ). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between chest versions 0.3.2 dated 2020-07-09 and 0.3.3 dated 2020-07-12
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 3 +++ R/chest_clogit.R | 8 ++++---- R/chest_cox.R | 8 ++++---- R/chest_plot.R | 2 ++ inst/doc/chest-vignette.html | 40 ++++++++++++++++++++-------------------- 7 files changed, 42 insertions(+), 37 deletions(-)
Title: Effect Estimates from All Models
Description: Estimates and plots effect estimates from models with all possible
combinations of a list of variables. It can be used for assessing treatment
effects in clinical trials or risk factors in bio-medical and epidemiological
research. Like Stata command 'confall' (Wang Z (2007) <doi:10.1177/1536867X0700700203> ),
'allestimates' calculates and stores all effect estimates, and plots them against p values or
Akaike information criterion (AIC) values. It currently has functions for linear
regression: all_lm(), logistic and Poisson regression: all_glm() and all_speedglm(),
and Cox proportional hazards regression: all_cox().
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between allestimates versions 0.1.7 dated 2020-07-09 and 0.1.8 dated 2020-07-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ R/all_cox.R | 6 +++--- inst/doc/allestimates-vignette.html | 10 ++++++---- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: A Class for Working with Time Series Based on 'data.table' and
'R6' with Largely Optional Reference Semantics
Description: Basic time series functionalities such as listing of missing
values, application of arbitrary aggregation as well as rolling (asymmetric)
window functions and automatic detection of periodicity. As it is mainly
based on 'data.table', it is fast and - in combination with the 'R6'
package - offers reference semantics. In addition to its native R6
interface, it provides an S3 interface inclusive an S3 wrapper method
generator for those who prefer the latter. Finally yet importantly, its
functional approach allows incorporating functionalities from many other
packages.
Author: Gerold Hepp [aut, cre]
Maintainer: Gerold Hepp <ghepp@iwag.tuwien.ac.at>
Diff between DTSg versions 0.5.0 dated 2020-06-09 and 0.6.0 dated 2020-07-12
DESCRIPTION | 14 LICENSE | 4 MD5 | 91 - NAMESPACE | 123 - NEWS.md | 142 - R/ClassDTSg.R | 2628 +++++++++++++++++--------------- R/S3WrapperGenerator.R | 118 - R/Swrappers.R | 1615 +++++++++++-------- R/aaa.R | 18 R/assertives.R | 117 - R/data.R | 27 R/funby.R | 557 +++--- R/funinterpolate.R | 173 +- R/rollback.R | 158 - README.md | 42 build/vignette.rds |binary inst/doc/a_basicUsage.R | 182 +- inst/doc/a_basicUsage.Rmd | 391 ++-- inst/doc/a_basicUsage.html | 1304 +++++++-------- inst/doc/b_advancedUsage.R | 168 +- inst/doc/b_advancedUsage.Rmd | 280 +-- inst/doc/b_advancedUsage.html | 1066 +++++------- inst/tinytest/data.R | 236 +- inst/tinytest/test_DTSg.R | 1570 ++++++++++--------- inst/tinytest/test_S3WrapperGenerator.R | 28 inst/tinytest/test_assertives.R | 102 - inst/tinytest/test_funby.R | 554 +++--- inst/tinytest/test_funinterpolate.R | 16 inst/tinytest/test_rollback.R | 72 man/DTSg.Rd | 15 man/S3WrapperGenerator.Rd | 11 man/TALFs.Rd | 17 man/aggregate.DTSg.Rd | 31 man/alter.DTSg.Rd | 11 man/colapply.DTSg.Rd | 64 man/cols.DTSg.Rd | 3 man/flow.Rd | 3 man/getCol.DTSg.Rd | 24 man/interpolateLinear.Rd | 10 man/merge.DTSg.Rd | 2 man/print.DTSg.Rd |only man/rollapply.DTSg.Rd | 9 man/setCols.DTSg.Rd |only man/subset.DTSg.Rd |only man/values.DTSg.Rd | 4 tests/tinytest.R | 6 vignettes/a_basicUsage.Rmd | 391 ++-- vignettes/b_advancedUsage.Rmd | 280 +-- 48 files changed, 6664 insertions(+), 6013 deletions(-)
Title: Fast Gaussian Process Computation Using Vecchia's Approximation
Description: Functions for fitting and doing predictions with
Gaussian process models using Vecchia's (1988) approximation.
Package also includes functions for reordering input locations,
finding ordered nearest neighbors (with help from 'FNN' package),
grouping operations, and conditional simulations.
Covariance functions for spatial and spatial-temporal data
on Euclidean domains and spheres are provided. The original
approximation is due to Vecchia (1988)
<http://www.jstor.org/stable/2345768>, and the reordering and
grouping methods are from Guinness (2018)
<doi:10.1080/00401706.2018.1437476>.
Model fitting employs a Fisher scoring algorithm described
in Guinness (2019) <arXiv:1905.08374>.
Author: Joseph Guinness [aut, cre],
Matthias Katzfuss [aut]
Maintainer: Joseph Guinness <joeguinness@gmail.com>
Diff between GpGp versions 0.2.1 dated 2019-07-09 and 0.2.2 dated 2020-07-12
GpGp-0.2.1/GpGp/data/datalist |only GpGp-0.2.2/GpGp/DESCRIPTION | 10 GpGp-0.2.2/GpGp/MD5 | 63 +- GpGp-0.2.2/GpGp/NEWS.md | 19 GpGp-0.2.2/GpGp/R/RcppExports.R | 238 ++++++++ GpGp-0.2.2/GpGp/R/fisher_scoring.R | 39 - GpGp-0.2.2/GpGp/R/fit_model.R | 290 +++++++--- GpGp-0.2.2/GpGp/R/penalties.R | 22 GpGp-0.2.2/GpGp/R/predictions.R | 7 GpGp-0.2.2/GpGp/man/GpGp.Rd | 1 GpGp-0.2.2/GpGp/man/argo2016.Rd | 6 GpGp-0.2.2/GpGp/man/cond_sim.Rd | 19 GpGp-0.2.2/GpGp/man/exponential_isotropic.Rd | 12 GpGp-0.2.2/GpGp/man/fisher_scoring.Rd | 12 GpGp-0.2.2/GpGp/man/fit_model.Rd | 101 ++- GpGp-0.2.2/GpGp/man/jason3.Rd | 6 GpGp-0.2.2/GpGp/man/matern15_isotropic.Rd |only GpGp-0.2.2/GpGp/man/matern15_scaledim.Rd |only GpGp-0.2.2/GpGp/man/matern25_isotropic.Rd |only GpGp-0.2.2/GpGp/man/matern25_scaledim.Rd |only GpGp-0.2.2/GpGp/man/matern35_isotropic.Rd |only GpGp-0.2.2/GpGp/man/matern35_scaledim.Rd |only GpGp-0.2.2/GpGp/man/matern45_isotropic.Rd |only GpGp-0.2.2/GpGp/man/matern45_scaledim.Rd |only GpGp-0.2.2/GpGp/man/order_maxmin.Rd | 3 GpGp-0.2.2/GpGp/man/predictions.Rd | 18 GpGp-0.2.2/GpGp/man/summary.GpGp_fit.Rd | 2 GpGp-0.2.2/GpGp/man/vecchia_Linv.Rd | 5 GpGp-0.2.2/GpGp/man/vecchia_grouped_profbeta_loglik_grad_info.Rd | 10 GpGp-0.2.2/GpGp/man/vecchia_profbeta_loglik_grad_info.Rd | 3 GpGp-0.2.2/GpGp/src/RcppExports.cpp | 217 +++++++ GpGp-0.2.2/GpGp/src/covmatrix_funs.h | 49 + GpGp-0.2.2/GpGp/src/covmatrix_funs_01.h | 109 +++ GpGp-0.2.2/GpGp/src/covmatrix_funs_09.h |only GpGp-0.2.2/GpGp/src/covmatrix_funs_10.h |only GpGp-0.2.2/GpGp/src/covmatrix_funs_11.h |only GpGp-0.2.2/GpGp/src/covmatrix_funs_12.h |only GpGp-0.2.2/GpGp/src/onepass.h | 7 GpGp-0.2.2/GpGp/tests/testthat/test_covfuns.R | 24 39 files changed, 1092 insertions(+), 200 deletions(-)
Title: Visualizations of Distributions and Uncertainty
Description: Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals,
eye plots (Spiegelhalter D., 1999) <doi:10.1111/1467-985X.00120>,
density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>,
quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>,
complementary cumulative distribution function
barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>,
and fit curves with multiple uncertainty ribbons.
Author: Matthew Kay [aut, cre]
Maintainer: Matthew Kay <mjskay@umich.edu>
Diff between ggdist versions 2.1.1 dated 2020-06-14 and 2.2.0 dated 2020-07-12
DESCRIPTION | 23 MD5 | 172 +- NAMESPACE | 6 NEWS.md | 9 R/geom_dotsinterval.R | 12 R/geom_interval.R | 254 +-- R/geom_lineribbon.R | 7 R/geom_pointinterval.R | 252 +-- R/geom_slabinterval.R | 15 R/lkjcorr_marginal.R | 378 ++-- R/parse_dist.R | 386 ++-- R/point_interval.R | 810 +++++----- R/scales.R | 622 +++---- R/stat.R | 58 R/stat_dist_slabinterval.R | 148 + R/stat_dotsinterval.R | 568 +++---- R/stat_interval.R | 4 R/stat_lineribbon.R | 3 R/stat_pointinterval.R | 4 R/stat_sample_slabinterval.R | 810 +++++----- R/stat_slabinterval.R | 762 ++++----- R/student_t.R | 162 +- R/theme_ggdist.R | 138 - R/tidy_format_translators.R | 242 +- R/util.R | 167 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/freq-uncertainty-vis.R | 10 inst/doc/freq-uncertainty-vis.Rmd | 12 inst/doc/freq-uncertainty-vis.html | 32 inst/doc/slabinterval.R | 34 inst/doc/slabinterval.Rmd | 54 inst/doc/slabinterval.html | 409 ++--- man/geom_dotsinterval.Rd | 10 man/geom_interval.Rd | 6 man/geom_lineribbon.Rd | 2 man/geom_pointinterval.Rd | 6 man/geom_slabinterval.Rd | 6 man/scales.Rd | 2 man/stat_dist_slabinterval.Rd | 51 man/stat_interval.Rd | 10 man/stat_lineribbon.Rd | 5 man/stat_pointinterval.Rd | 10 man/stat_sample_slabinterval.Rd | 6 man/stat_slabinterval.Rd | 4 man/theme_ggdist.Rd | 4 tests/figs/deps.txt | 2 tests/figs/geom-dotsinterval/stat-dist-dots-with-na-rm-false.svg |only tests/figs/geom-dotsinterval/stat-dist-dots-with-na-rm-true.svg |only tests/figs/geom-interval/grouped-intervals-h-stat-mode-hdi.svg | 134 - tests/figs/geom-interval/grouped-intervals-h-stat-reverse-order.svg | 134 - tests/figs/geom-interval/grouped-intervals-h-stat.svg | 134 - tests/figs/geom-lineribbon/basic-stat-dist-lineribbon.svg | 128 - tests/figs/geom-lineribbon/lineribbon-with-step-hv-works.svg | 148 - tests/figs/geom-lineribbon/lineribbon-with-step-mid-works.svg | 148 - tests/figs/geom-lineribbon/lineribbon-with-step-true-works.svg | 148 - tests/figs/geom-lineribbon/lineribbon-with-step-vh-works.svg | 148 - tests/figs/geom-lineribbon/one-group-geom-lineribbon-horizontal.svg | 130 - tests/figs/geom-lineribbon/one-group-geom-lineribbon-manual-aes-in-ggplot-call.svg | 130 - tests/figs/geom-lineribbon/one-group-geom-lineribbon-reverse-order.svg | 130 - tests/figs/geom-lineribbon/one-group-geom-lineribbon.svg | 130 - tests/figs/geom-lineribbon/one-group-stat-lineribbon-horizontal.svg | 132 - tests/figs/geom-lineribbon/one-group-stat-lineribbon-reverse-order-mean-qi.svg | 132 - tests/figs/geom-lineribbon/one-group-stat-lineribbon.svg | 132 - tests/figs/geom-lineribbon/two-group-stat-dist-lineribbon.svg | 138 - tests/figs/geom-lineribbon/two-group-stat-lineribbons-grouped-by-color-and-linetype.svg | 156 - tests/figs/geom-lineribbon/two-group-stat-lineribbons-grouped-by-group.svg | 140 - tests/figs/geom-pointinterval/geom-pointinterval-na-rm-false.svg |only tests/figs/geom-pointinterval/geom-pointinterval-na-rm-true.svg |only tests/figs/geom-pointinterval/grouped-pointintervals-h-stat-mode-hdi.svg | 126 - tests/figs/geom-pointinterval/grouped-pointintervals-h-stat-reverse-order.svg | 122 - tests/figs/geom-pointinterval/grouped-pointintervals-h-stat.svg | 122 - tests/figs/geom-slabinterval/halfeye-with-normalize-all.svg | 6 tests/figs/geom-slabinterval/halfeye-with-normalize-groups.svg | 2 tests/figs/geom-slabinterval/halfeye-with-normalize-none.svg | 6 tests/figs/geom-slabinterval/halfeye-with-normalize-panels.svg | 6 tests/figs/geom-slabinterval/halfeye-with-normalize-xy.svg | 2 tests/figs/stat-dist/distributional-objects-in-stat-dist-ccdfinterval.svg |only tests/figs/stat-dist/distributional-objects-in-stat-dist-halfeye.svg |only tests/figs/stat-dist/pdf-and-cdf-on-a-slabinterval.svg |only tests/figs/stat-dist/stat-dist-with-no-grouping.svg |only tests/figs/stat-eye/two-parameter-numeric-horizontal-eye.svg | 104 - tests/figs/stat-eye/two-parameter-numeric-horizontal-half-eye-fill.svg | 140 - tests/testthat/test.geom_dotsinterval.R | 193 +- tests/testthat/test.geom_interval.R | 6 tests/testthat/test.geom_pointinterval.R | 239 +- tests/testthat/test.point_interval.R | 670 ++++---- tests/testthat/test.stat_dist_slabinterval.R | 414 ++--- tests/testthat/test.stat_eye.R | 10 vignettes/freq-uncertainty-vis.Rmd | 12 vignettes/slabinterval.Rmd | 54 91 files changed, 5868 insertions(+), 5525 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Wesley Gardiner [ctb] (Unit tests),
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <jdahlke@humrro.org>
Diff between psychmeta versions 2.3.10 dated 2020-06-07 and 2.4.0 dated 2020-07-12
psychmeta-2.3.10/psychmeta/inst/doc/overview.R |only psychmeta-2.3.10/psychmeta/inst/doc/overview.Rmd |only psychmeta-2.3.10/psychmeta/inst/doc/overview.html |only psychmeta-2.3.10/psychmeta/vignettes/overview.Rmd |only psychmeta-2.4.0/psychmeta/DESCRIPTION | 14 psychmeta-2.4.0/psychmeta/MD5 | 53 psychmeta-2.4.0/psychmeta/NAMESPACE | 1 psychmeta-2.4.0/psychmeta/NEWS | 37 psychmeta-2.4.0/psychmeta/R/adjust_n.R | 22 psychmeta-2.4.0/psychmeta/R/compute_dmod.R | 18 psychmeta-2.4.0/psychmeta/R/convert_es.R | 1258 ++++------ psychmeta-2.4.0/psychmeta/R/filters.R | 37 psychmeta-2.4.0/psychmeta/R/get_stuff.R | 281 +- psychmeta-2.4.0/psychmeta/R/ma_r.R | 20 psychmeta-2.4.0/psychmeta/R/ma_r_order2.R | 48 psychmeta-2.4.0/psychmeta/R/methods_print.R | 6 psychmeta-2.4.0/psychmeta/R/reshape.R | 47 psychmeta-2.4.0/psychmeta/R/simulate_r.R | 12 psychmeta-2.4.0/psychmeta/R/simulate_r_legacy.R | 12 psychmeta-2.4.0/psychmeta/R/tmvtnorm.R |only psychmeta-2.4.0/psychmeta/R/wrangle_data.R | 73 psychmeta-2.4.0/psychmeta/R/zzz.R | 4 psychmeta-2.4.0/psychmeta/README.md | 2 psychmeta-2.4.0/psychmeta/build/vignette.rds |binary psychmeta-2.4.0/psychmeta/inst/doc/barebones_correlation.html | 4 psychmeta-2.4.0/psychmeta/man/convert_es.Rd | 44 psychmeta-2.4.0/psychmeta/man/filter_r_bar.Rd |only psychmeta-2.4.0/psychmeta/man/psychmeta-package.Rd | 1 psychmeta-2.4.0/psychmeta/man/reshape_mat2dat.Rd | 10 psychmeta-2.4.0/psychmeta/tests |only 30 files changed, 1098 insertions(+), 906 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-03 1.0