Title: Pattern-Based Zoneless Method for Analysis and Visualization of
Racial Topography
Description: Implements a computational framework for a pattern-based,
zoneless analysis, and visualization of (ethno)racial topography
(Dmowska, Stepinski, and Nowosad (2020) <doi:10.1016/j.apgeog.2020.102239>).
It is a reimagined
approach for analyzing residential segregation and racial diversity based on
the concept of 'landscape’ used in the domain of landscape ecology.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Anna Dmowska [aut],
Tomasz Stepinski [aut]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between raceland versions 1.0.8 dated 2020-04-02 and 1.1.0 dated 2020-07-29
raceland-1.0.8/raceland/vignettes/raceland-intro.html |only raceland-1.1.0/raceland/DESCRIPTION | 12 raceland-1.1.0/raceland/MD5 | 32 raceland-1.1.0/raceland/NAMESPACE | 1 raceland-1.1.0/raceland/R/calculate_metrics.R | 2 raceland-1.1.0/raceland/R/quantify_raceland.R |only raceland-1.1.0/raceland/README.md | 55 raceland-1.1.0/raceland/build/vignette.rds |binary raceland-1.1.0/raceland/inst/CITATION |only raceland-1.1.0/raceland/inst/doc/raceland-intro1.html | 257 ++- raceland-1.1.0/raceland/inst/doc/raceland-intro2.html | 417 +++--- raceland-1.1.0/raceland/inst/doc/raceland-intro3.html | 662 +++++----- raceland-1.1.0/raceland/man/calculate_metrics.Rd | 2 raceland-1.1.0/raceland/man/figures/README-unnamed-chunk-3-1.png |binary raceland-1.1.0/raceland/man/figures/README-unnamed-chunk-4-1.png |binary raceland-1.1.0/raceland/man/figures/README-unnamed-chunk-5-1.png |binary raceland-1.1.0/raceland/man/figures/README-unnamed-chunk-6-1.png |binary raceland-1.1.0/raceland/man/quanfity_raceland.Rd |only raceland-1.1.0/raceland/man/raceland-package.Rd | 4 19 files changed, 792 insertions(+), 652 deletions(-)
Title: Polytomous Logit-Normit (Graded Logistic) Model Estimation
Description: Performs bivariate composite likelihood and full
information maximum likelihood estimation for polytomous
logit-normit (graded logistic) item response theory (IRT)
models.
Author: Carl F. Falk and Harry Joe
Maintainer: Carl F. Falk <cffalk@gmail.com>
Diff between pln versions 0.2-1 dated 2013-01-25 and 0.2-2 dated 2020-07-29
pln-0.2-1/pln/TODO |only pln-0.2-2/pln/DESCRIPTION | 12 - pln-0.2-2/pln/MD5 | 26 +-- pln-0.2-2/pln/NAMESPACE | 17 +- pln-0.2-2/pln/NEWS.md |only pln-0.2-2/pln/R/nrbcpln.R | 1 pln-0.2-2/pln/R/nrmlepln.R | 138 ++++++++++++++++ pln-0.2-2/pln/R/nrmlerasch.R | 1 pln-0.2-2/pln/R/simulpln.R | 46 +++++ pln-0.2-2/pln/R/startvals.R | 59 +++++++ pln-0.2-2/pln/README.md |only pln-0.2-2/pln/man/nrmlepln.Rd | 328 ++++++++++++++++++++------------------- pln-0.2-2/pln/man/pln-package.Rd | 110 ++++++------- pln-0.2-2/pln/man/simulpln.Rd | 129 +++++++-------- pln-0.2-2/pln/man/startalphas.Rd | 93 ++++------- pln-0.2-2/pln/src/pln_init.c |only 16 files changed, 603 insertions(+), 357 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.1.5 dated 2020-07-03 and 0.1.6 dated 2020-07-29
dm-0.1.5/dm/build/dm.pdf |only dm-0.1.5/dm/vignettes/abstracts |only dm-0.1.6/dm/DESCRIPTION | 11 dm-0.1.6/dm/MD5 | 147 ++--- dm-0.1.6/dm/NAMESPACE | 2 dm-0.1.6/dm/NEWS.md | 28 + dm-0.1.6/dm/R/add-tbl.R | 2 dm-0.1.6/dm/R/bind.R |only dm-0.1.6/dm/R/db-helpers.R | 18 dm-0.1.6/dm/R/db-interface.R | 101 ++- dm-0.1.6/dm/R/dm-from-src.R | 24 dm-0.1.6/dm/R/dm.R | 162 +++--- dm-0.1.6/dm/R/dplyr.R | 10 dm-0.1.6/dm/R/error-helpers.R | 12 dm-0.1.6/dm/R/filter-dm.R | 2 dm-0.1.6/dm/R/financial.R | 21 dm-0.1.6/dm/R/foreign-keys.R | 2 dm-0.1.6/dm/R/format.R | 7 dm-0.1.6/dm/R/learn.R | 15 dm-0.1.6/dm/R/nest.R | 2 dm-0.1.6/dm/R/primary-keys.R | 2 dm-0.1.6/dm/R/ptype.R | 4 dm-0.1.6/dm/R/rows-db.R | 2 dm-0.1.6/dm/R/rows-dm.R | 38 - dm-0.1.6/dm/R/table-surgery.R | 4 dm-0.1.6/dm/R/tidyselect.R | 10 dm-0.1.6/dm/R/utils.R | 4 dm-0.1.6/dm/R/zzx-deprecated.R | 13 dm-0.1.6/dm/build/vignette.rds |binary dm-0.1.6/dm/inst/doc/dm.html | 122 ++-- dm-0.1.6/dm/inst/doc/howto-dm-db.html | 189 +++---- dm-0.1.6/dm/inst/doc/howto-dm-df.html | 188 +++---- dm-0.1.6/dm/inst/doc/howto-dm-theory.html | 232 ++++----- dm-0.1.6/dm/inst/doc/tech-dm-cdm.html | 136 ++--- dm-0.1.6/dm/inst/doc/tech-dm-class.R | 19 dm-0.1.6/dm/inst/doc/tech-dm-class.Rmd | 47 + dm-0.1.6/dm/inst/doc/tech-dm-class.html | 335 +++++++------ dm-0.1.6/dm/inst/doc/tech-dm-draw.html | 24 dm-0.1.6/dm/inst/doc/tech-dm-filter.html | 176 +++--- dm-0.1.6/dm/inst/doc/tech-dm-join.html | 148 +++-- dm-0.1.6/dm/inst/doc/tech-dm-low-level.html | 140 +++-- dm-0.1.6/dm/inst/doc/tech-dm-naming.html | 16 dm-0.1.6/dm/inst/doc/tech-dm-zoom.html | 222 ++++---- dm-0.1.6/dm/man/copy_dm_to.Rd | 16 dm-0.1.6/dm/man/decompose_table.Rd | 2 dm-0.1.6/dm/man/dm.Rd | 3 dm-0.1.6/dm/man/dm_bind.Rd |only dm-0.1.6/dm/man/dm_enum_fk_candidates.Rd | 2 dm-0.1.6/dm/man/dm_filter.Rd | 2 dm-0.1.6/dm/man/dm_financial.Rd | 4 dm-0.1.6/dm/man/dm_from_src.Rd | 6 dm-0.1.6/dm/man/dm_ptype.Rd | 4 dm-0.1.6/dm/man/enum_pk_candidates.Rd | 2 dm-0.1.6/dm/man/reunite_parent_child.Rd | 2 dm-0.1.6/dm/man/rows-db.Rd | 2 dm-0.1.6/dm/man/rows-dm.Rd | 2 dm-0.1.6/dm/tests/testthat/helper-config-db.R | 2 dm-0.1.6/dm/tests/testthat/helper-skip.R | 5 dm-0.1.6/dm/tests/testthat/helper-src.R | 11 dm-0.1.6/dm/tests/testthat/out/bind.txt |only dm-0.1.6/dm/tests/testthat/out/bind_src_mismatch_error.txt |only dm-0.1.6/dm/tests/testthat/out/output.txt | 4 dm-0.1.6/dm/tests/testthat/out/rows-db.txt | 27 + dm-0.1.6/dm/tests/testthat/out/rows-dm-truncate.txt |only dm-0.1.6/dm/tests/testthat/out/rows-dm-update.txt |only dm-0.1.6/dm/tests/testthat/out/tidyselect.txt |only dm-0.1.6/dm/tests/testthat/test-bind.R |only dm-0.1.6/dm/tests/testthat/test-db-interface.R | 93 ++- dm-0.1.6/dm/tests/testthat/test-dm-from-src.R |only dm-0.1.6/dm/tests/testthat/test-dm.R | 12 dm-0.1.6/dm/tests/testthat/test-dplyr.R | 1 dm-0.1.6/dm/tests/testthat/test-flatten.R | 8 dm-0.1.6/dm/tests/testthat/test-format.R | 4 dm-0.1.6/dm/tests/testthat/test-rows-db.R | 4 dm-0.1.6/dm/tests/testthat/test-rows-dm.R | 113 ++++ dm-0.1.6/dm/tests/testthat/test-tidyselect.R | 8 dm-0.1.6/dm/tests/testthat/test-zoom.R | 4 dm-0.1.6/dm/tests/testthat/test-zzx-deprecated.R | 44 + dm-0.1.6/dm/vignettes/tech-dm-class.Rmd | 47 + 79 files changed, 1843 insertions(+), 1228 deletions(-)
Title: Graphical Interaction Models
Description: Provides the following types of models: Models for contingency
tables (i.e. log-linear models) Graphical Gaussian models for multivariate
normal data (i.e. covariance selection models) Mixed interaction models.
Documentation about 'gRim' is provided by vignettes included in this
package and the book by Højsgaard, Edwards and Lauritzen (2012,
<doi:10.1007/978-1-4614-2299-0>); see 'citation("gRim")' for details.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRim versions 0.2.4 dated 2020-06-26 and 0.2.5 dated 2020-07-29
DESCRIPTION | 8 ++--- MD5 | 44 ++++++++++++++--------------- NEWS | 6 +++ R/getEdges.R | 4 +- R/grim-utilities.R | 11 +++++-- R/imodel-dmod.R | 2 - R/imodel-general.R | 5 +-- R/imodel-update.R | 13 ++++---- R/loglin-dim.R | 2 - R/mi-comparemodels.R | 10 +++--- R/mi-dimension.R | 2 - R/mi-weakdata.R | 2 - R/mi-weakmodel.R | 2 - R/parse-gm-formula.R | 4 +- R/test-all-edges.R | 4 +- R/test-single-edges.R | 10 +++--- inst/doc/grim.pdf |binary vignettes/figures/GRIM-011.pdf |binary vignettes/figures/GRIM-013.pdf |binary vignettes/figures/GRIM-015.pdf |binary vignettes/figures/GRIM-034.pdf |binary vignettes/figures/GRIM-035.pdf |binary vignettes/figures/GRIM-fundamentalfig1.pdf |binary 23 files changed, 73 insertions(+), 56 deletions(-)
Title: Fast Data Aggregation, Modification, and Filtering with Pipes
and 'data.table'
Description: Provides pipe-style interface for 'data.table'. Package preserves all 'data.table' features without
significant impact on performance. 'let' and 'take' functions are simplified interfaces for most common data
manipulation tasks. For example, you can write 'take(mtcars, mean(mpg), by = am)' for aggregation or
'let(mtcars, hp_wt = hp/wt, hp_wt_mpg = hp_wt/mpg)' for modification. Use 'take_if/let_if' for conditional
aggregation/modification. 'query_if' function translates its arguments one-to-one to '[.data.table' method.
Additionally there are some conveniences such as automatic 'data.frame' conversion to 'data.table'.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between maditr versions 0.7.3 dated 2020-07-22 and 0.7.4 dated 2020-07-29
DESCRIPTION | 6 - MD5 | 54 +++++------ NEWS | 5 + R/coalesce.R | 2 R/dcast.R | 14 +- R/dt_utils.R | 203 +++++++++++++++++++++---------------------- R/join.R | 2 R/let.R | 80 ++++++++-------- R/maditr.R | 76 ++++++++-------- R/query.R | 54 +++++------ R/to_list.R | 23 ++-- R/verbs.R | 42 ++++---- R/vlookup.R | 29 +++--- inst/doc/Introduction.R | 8 + inst/doc/Introduction.Rmd | 8 + inst/doc/Introduction.html | 16 +-- inst/tinytest/test_vlookup.R | 4 man/coalesce.Rd | 4 man/dcast.Rd | 20 ++-- man/dt_count.Rd | 6 - man/dt_left_join.Rd | 2 man/dt_mutate.Rd | 30 +++--- man/let_if.Rd | 55 +++++------ man/maditr.Rd | 60 +++++++----- man/query_if.Rd | 48 ++++------ man/to_list.Rd | 19 ++-- man/vlookup.Rd | 6 - vignettes/Introduction.Rmd | 8 + 28 files changed, 456 insertions(+), 428 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
and fair-cut forest (Cortes (2019) <arXiv:1911.06646>),
for isolation-based outlier detection, clustered outlier detection, distance or similarity
approximation (Cortes (2019) <arXiv:1910.12362>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting. Provides simple heuristics for fitting the model to
categorical columns and handling missing data, and offers options for varying between random and guided
splits, and for using different splitting criteria.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.1.17 dated 2020-07-20 and 0.1.18 dated 2020-07-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/serialize.cpp | 9 ++++++++- 3 files changed, 14 insertions(+), 7 deletions(-)
Title: Analyzing Gastric Emptying from MRI or Scintigraphy
Description: Fits gastric emptying time series from MRI or scintigraphic measurements
using nonlinear mixed-model population fits with 'nlme' and Bayesian methods with
Stan; computes derived parameters such as t50 and AUC.
Author: Dieter Menne [aut, cre]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between gastempt versions 0.5.0 dated 2020-05-01 and 0.5.1 dated 2020-07-29
DESCRIPTION | 19 ++++++++++--------- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 1 + R/fitnlme.R | 1 + README.md | 2 +- build/vignette.rds |binary inst/doc/gastempt.html | 20 ++++++++++++++++++-- inst/shiny/server.R | 1 + src/Makevars | 10 ++-------- src/Makevars.win | 11 +++-------- src/stanExports_linexp_gastro_1b.h | 20 +++++++++++++++----- src/stanExports_linexp_gastro_2b.h | 20 +++++++++++++++----- src/stanExports_powexp_gastro_1b.h | 20 +++++++++++++++----- src/stanExports_powexp_gastro_2c.h | 20 +++++++++++++++----- tests/figs |only tests/testthat/test-graphics.R |only 16 files changed, 113 insertions(+), 61 deletions(-)
Title: Beautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds
Description: Creates bubbles within 'shiny' and 'rmarkdown' backgrounds using the 'bubbly-bg' 'JavaScript' library.
Author: Mohamed El Fodil Ihaddaden [aut, cre],
David Åse [cph] (bubbly-bg library)
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between bubblyr versions 0.1.1 dated 2020-07-10 and 0.1.2 dated 2020-07-29
DESCRIPTION | 10 ++-- MD5 | 20 ++++---- NEWS.md | 5 ++ R/bubbly.R | 101 ++++++++++++++++++++++++++++++++++++++++++++- README.md | 17 +++++-- build/vignette.rds |binary inst/doc/Introduction.R | 3 - inst/doc/Introduction.Rmd | 6 +- inst/doc/Introduction.html | 23 ++++++++-- man/bubbly.Rd | 82 ++++++++++++++++++------------------ vignettes/Introduction.Rmd | 6 +- 11 files changed, 203 insertions(+), 70 deletions(-)
Title: Economics and Pricing Tools
Description: Functions to aid in micro and macro economic analysis and handling of price and
currency data. Includes extraction of relevant inflation and exchange rate data from World Bank
API, data cleaning/parsing, and standardisation. Inflation adjustment
calculations as found in Principles of Macroeconomics by Gregory Mankiw et al (2014). Current
and historical end of day exchange rates for 171 currencies from the European Central Bank
Statistical Data Warehouse (2020) <https://sdw.ecb.europa.eu/curConverter.do>.
Author: Steve Condylios [aut, cre] (<https://orcid.org/0000-0003-0599-844X>)
Maintainer: Steve Condylios <steve.condylios@gmail.com>
Diff between priceR versions 0.1.3 dated 2020-06-21 and 0.1.4 dated 2020-07-29
DESCRIPTION | 19 +++++++++++-------- MD5 | 11 +++++++++-- NAMESPACE | 5 +++++ R/currencies.R |only man/currencies.Rd |only man/display_api_info.Rd |only man/exchange_rate_latest.Rd |only man/historical_exchange_rates.Rd |only man/make_dates.Rd |only man/retrieve_historical_rates.Rd |only 10 files changed, 25 insertions(+), 10 deletions(-)
Title: Scrape and Analyze the J! Archive
Description: Scrape the fan-made J! Archive <https://www.j-archive.com/>
for Jeopardy episode contestants, categories, clues, answers, and scores.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between whatr versions 1.0.0 dated 2020-03-19 and 1.0.1 dated 2020-07-29
whatr-1.0.0/whatr/man/figures/README-unnamed-chunk-3-1.png |only whatr-1.0.1/whatr/DESCRIPTION | 18 +-- whatr-1.0.1/whatr/MD5 | 65 ++++++------- whatr-1.0.1/whatr/NEWS.md | 2 whatr-1.0.1/whatr/README.md | 3 whatr-1.0.1/whatr/man/boards.Rd | 6 - whatr-1.0.1/whatr/man/episodes.Rd | 6 - whatr-1.0.1/whatr/man/figures/README-usage-1.png |binary whatr-1.0.1/whatr/man/players.Rd | 6 - whatr-1.0.1/whatr/man/scores.Rd | 6 - whatr-1.0.1/whatr/man/synopses.Rd | 6 - whatr-1.0.1/whatr/man/whatr_airdate.Rd | 6 - whatr-1.0.1/whatr/man/whatr_answers.Rd | 6 - whatr-1.0.1/whatr/man/whatr_board.Rd | 6 - whatr-1.0.1/whatr/man/whatr_categories.Rd | 6 - whatr-1.0.1/whatr/man/whatr_clues.Rd | 6 - whatr-1.0.1/whatr/man/whatr_doubles.Rd | 6 - whatr-1.0.1/whatr/man/whatr_order.Rd | 6 - whatr-1.0.1/whatr/man/whatr_players.Rd | 6 - whatr-1.0.1/whatr/man/whatr_scores.Rd | 6 - whatr-1.0.1/whatr/man/whatr_synopsis.Rd | 6 - whatr-1.0.1/whatr/tests/testthat/test-airdate.R | 2 whatr-1.0.1/whatr/tests/testthat/test-answers.R | 2 whatr-1.0.1/whatr/tests/testthat/test-board.R | 2 whatr-1.0.1/whatr/tests/testthat/test-categories.R | 2 whatr-1.0.1/whatr/tests/testthat/test-clues.R | 2 whatr-1.0.1/whatr/tests/testthat/test-convert.R | 11 ++ whatr-1.0.1/whatr/tests/testthat/test-data.R | 1 whatr-1.0.1/whatr/tests/testthat/test-doubles.R | 2 whatr-1.0.1/whatr/tests/testthat/test-order.R | 2 whatr-1.0.1/whatr/tests/testthat/test-players.R | 2 whatr-1.0.1/whatr/tests/testthat/test-plot.R | 2 whatr-1.0.1/whatr/tests/testthat/test-scores.R | 2 whatr-1.0.1/whatr/tests/testthat/test-synopsis.R | 2 34 files changed, 139 insertions(+), 73 deletions(-)
Title: Effects and Importances of Model Ingredients
Description: Collection of tools for assessment of feature importance and feature effects.
Key functions are:
feature_importance() for assessment of global level feature importance,
ceteris_paribus() for calculation of the what-if plots,
partial_dependence() for partial dependence plots,
conditional_dependence() for conditional dependence plots,
accumulated_dependence() for accumulated local effects plots,
aggregate_profiles() and cluster_profiles() for aggregation of ceteris paribus profiles,
generic print() and plot() for better usability of selected explainers,
generic plotD3() for interactive, D3 based explanations, and
generic describe() for explanations in natural language.
The package 'ingredients' is a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>),
Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>),
Adam Izdebski [aut]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between ingredients versions 1.3.0 dated 2020-07-01 and 1.3.1 dated 2020-07-29
DESCRIPTION | 8 +- MD5 | 38 ++++++------- NEWS.md | 10 +++ R/aggregate_profiles.R | 24 +++++--- R/calculate_variable_profile.R | 27 +++++++-- R/ceteris_paribus.R | 10 +++ R/cluster_profiles.R | 10 +++ R/plot_aggregated_profiles.R | 6 +- R/plot_ceteris_paribus.R | 14 ++++- R/plot_ceteris_paribus_oscillations.R | 2 R/plot_feature_importance.R | 6 +- build/vignette.rds |binary inst/doc/vignette_describe.html | 84 +++++++++++++++++------------- inst/doc/vignette_simulated.html | 30 +++++----- inst/doc/vignette_titanic.html | 34 ++++++------ man/calculate_variable_split.Rd | 20 ++++++- man/ceteris_paribus.Rd | 7 ++ man/plot.aggregated_profiles_explainer.Rd | 2 man/plot.ceteris_paribus_oscillations.Rd | 2 man/plot.feature_importance_explainer.Rd | 4 - 20 files changed, 217 insertions(+), 121 deletions(-)
Title: Model Agnostic Instance Level Variable Attributions
Description: Model agnostic tool for decomposition of predictions from black boxes.
Supports additive attributions and attributions with interactions.
The Break Down Table shows contributions of every variable to a final prediction.
The Break Down Plot presents variable contributions in a concise graphical way.
This package works for classification and regression models.
It is an extension of the 'breakDown' package (Staniak and Biecek 2018) <doi:10.32614/RJ-2018-072>,
with new and faster strategies for orderings.
It supports interactions in explanations and has interactive visuals (implemented with 'D3.js' library).
The methodology behind is described in the 'iBreakDown' article (Gosiewska and Biecek 2019) <arXiv:1903.11420>
This package is a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>),
Alicja Gosiewska [aut] (<https://orcid.org/0000-0001-6563-5742>),
Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>),
Adam Izdebski [aut],
Dariusz Komosinski [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between iBreakDown versions 1.2.0 dated 2020-04-20 and 1.3.1 dated 2020-07-29
DESCRIPTION | 8 MD5 | 38 +- NEWS.md | 12 R/plotD3_break_down.R | 12 R/plotD3_shap.R | 10 R/plot_break_down.R | 51 ++- R/plot_break_down_uncertainty.R | 9 build/vignette.rds |binary inst/doc/vignette_iBreakDown_classification.html | 74 +++-- inst/doc/vignette_iBreakDown_description.Rmd | 296 +++++++++++------------ inst/doc/vignette_iBreakDown_description.html | 78 +++--- inst/doc/vignette_iBreakDown_regression.html | 68 +++-- inst/doc/vignette_iBreakDown_titanic.Rmd | 230 ++++++++--------- inst/doc/vignette_iBreakDown_titanic.html | 62 +++- man/plot.break_down.Rd | 10 man/plot.break_down_uncertainty.Rd | 5 man/plotD3_break_down.Rd | 7 man/plotD3_shap.Rd | 5 vignettes/vignette_iBreakDown_description.Rmd | 296 +++++++++++------------ vignettes/vignette_iBreakDown_titanic.Rmd | 230 ++++++++--------- 20 files changed, 812 insertions(+), 689 deletions(-)
Title: A Test Environment for Database Requests
Description: Testing and documenting code that communicates with remote
databases can be painful. Although the interaction with R is usually relatively
simple (e.g. data(frames) passed to and from a database), because they rely on
a separate service and the data there, testing them can be difficult to set up,
unsustainable in a continuous integration environment, or impossible without
replicating an entire production cluster. This package addresses that by
allowing you to make recordings from your database interactions and then play
them back while testing (or in other contexts) all without needing to spin up
or have access to the database your code would typically connect to.
Author: Jonathan Keane [aut, cre] (<https://orcid.org/0000-0001-7087-9776>),
Mauricio Vargas [aut] (<https://orcid.org/0000-0003-1017-7574>),
Helen Miller [rev] (reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/366),
Etienne Racine [rev] (reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/366)
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between dittodb versions 0.1.0 dated 2020-07-24 and 0.1.1 dated 2020-07-29
DESCRIPTION | 6 - MD5 | 51 ++++---- NAMESPACE | 1 NEWS.md | 5 R/capture-requests.R | 50 ++++---- R/mock-db.R | 58 +++++----- R/mock-paths.R | 41 +++---- R/nycflights13-sql.R | 41 ++++--- R/redact.R | 24 ++-- R/utils.R | 41 +++++-- README.md | 20 +-- inst/WORDLIST | 4 inst/doc/developing-dittodb.Rmd | 12 +- inst/doc/developing-dittodb.html | 32 +---- inst/doc/dittodb.html | 220 +++++++++++++++++--------------------- inst/doc/nycflights.html | 20 --- inst/doc/travelling.html | 130 +++++++++------------- man/capture_requests.Rd | 50 ++++---- man/check_for_pkg.Rd |only man/mockdb.Rd | 58 +++++----- man/nycflights13_create_sql.Rd | 16 +- man/nycflights13_create_sqlite.Rd | 14 +- man/nycflights_sqlite.Rd | 10 + man/redact_columns.Rd | 24 ++-- man/with_mock_path.Rd | 41 +++---- tests/testthat/test-utils.R | 26 ++++ vignettes/developing-dittodb.Rmd | 12 +- 27 files changed, 508 insertions(+), 499 deletions(-)
Title: Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap data in wildlife studies. The package provides a workflow for storing and sorting camera trap photos (and videos), tabulates records of species and individuals, and creates detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it can visualise species activity data and provides simple mapping functions with GIS export.
Author: Juergen Niedballa [aut, cre] (<https://orcid.org/0000-0002-9187-2116>),
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
Rahel Sollmann [aut] (<https://orcid.org/0000-0002-1607-2039>),
John Mathai [ctb],
Seth Timothy Wong [ctb],
An The Truong Nguyen [ctb],
Azlan bin Mohamed [ctb] (<https://orcid.org/0000-0003-3788-4383>),
Andrew Tilker [ctb] (<https://orcid.org/0000-0003-3630-8691>),
Andreas Wilting [ctb, ths] (<https://orcid.org/0000-0001-5073-9186>)
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between camtrapR versions 2.0.2 dated 2020-04-22 and 2.0.3 dated 2020-07-29
DESCRIPTION | 8 - MD5 | 57 ++++--- NEWS.md | 13 + R/cameraOperation.R | 29 ++-- R/detectionHistory.R | 95 +++++++------ R/imageRename.R | 27 ++- R/recordTable.R | 15 +- R/recordTableIndividual.R | 18 +- R/spatialDetectionHistory.R | 79 +++++------ R/variousOtherHelperFunctions.R | 237 +++++++++++++++++---------------- README.md | 2 build/vignette.rds |binary inst/doc/camtrapr1.R | 4 inst/doc/camtrapr1.Rmd | 8 - inst/doc/camtrapr1.html | 66 ++++----- inst/doc/camtrapr2.Rmd | 14 + inst/doc/camtrapr2.html | 94 ++++++------- inst/doc/camtrapr3.html | 73 +++++----- inst/doc/camtrapr4.html | 21 +- man/camtrapR-package.Rd | 4 man/detectionHistory.Rd | 2 man/exifTagNames.Rd | 2 man/imageRename.Rd | 4 man/recordTable.Rd | 2 man/recordTableIndividual.Rd | 2 man/timeShiftImages.Rd | 2 tests/testthat/test_detectionHistory.R | 16 ++ tests/testthat/test_surveyReport.R |only vignettes/camtrapr1.Rmd | 8 - vignettes/camtrapr2.Rmd | 14 + 30 files changed, 498 insertions(+), 418 deletions(-)
Title: Tests for Rotational Symmetry on the Hypersphere
Description: Implementation of the tests for rotational symmetry on the hypersphere
proposed in García-Portugués, Paindaveine and Verdebout (2020)
<doi:10.1080/01621459.2019.1665527>. The package also implements the
proposed distributions on the hypersphere, based on the tangent-normal
decomposition, and allows for the replication of the data application
considered in the paper.
Author: Eduardo García-Portugués [aut, cre],
Davy Paindaveine [aut],
Thomas Verdebout [aut]
Maintainer: Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>
Diff between rotasym versions 1.0.7 dated 2020-03-09 and 1.0.8 dated 2020-07-29
DESCRIPTION | 22 +++++++++++----------- MD5 | 16 ++++++++-------- NEWS.md | 11 +++++++++-- R/ACG.R | 1 + R/data.R | 10 +++++----- R/vMF.R | 11 ++++++----- man/ACG.Rd | 1 + man/sunspots_births.Rd | 16 +++++++++------- man/vMF.Rd | 3 ++- 9 files changed, 52 insertions(+), 39 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Munich, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.9.18 dated 2020-05-03 and 0.9.19 dated 2020-07-29
DESCRIPTION | 21 ++++++------ MD5 | 70 +++++++++++++++++++++--------------------- NAMESPACE | 3 + R/hmi_imp_binary_multi.R | 6 +-- R/hmi_imp_cat_multi.R | 7 ++-- R/hmi_imp_catordered_multi.R | 7 ++-- R/hmi_imp_catordered_single.R | 7 ++-- R/hmi_imp_count_multi.R | 6 +-- R/hmi_imp_roundedcont.R | 4 +- R/hmi_smallfunctions.R | 1 R/hmi_wrapper.R | 4 +- inst/doc/myvignette.html | 4 +- man/Gcsemv.Rd | 6 ++- man/Mode.Rd | 40 ++++++++++++------------ man/ceiling.interval.Rd | 30 +++++++++--------- man/center_interval.Rd | 36 ++++++++++----------- man/exp.interval.Rd | 30 +++++++++--------- man/factors.Rd | 40 ++++++++++++------------ man/floor.interval.Rd | 34 ++++++++++---------- man/head.interval.Rd | 30 +++++++++--------- man/interval-add.Rd | 36 ++++++++++----------- man/interval-divide.Rd | 36 ++++++++++----------- man/interval-multiply.Rd | 36 ++++++++++----------- man/interval-power.Rd | 36 ++++++++++----------- man/interval-subtract.Rd | 36 ++++++++++----------- man/interval2idf.Rd | 32 +++++++++---------- man/is_interval.Rd | 34 ++++++++++---------- man/log.interval.Rd | 30 +++++++++--------- man/nhanes_imp.Rd | 6 ++- man/nhanes_mod.Rd | 6 ++- man/nhanes_sub.Rd | 6 ++- man/round.interval.Rd | 30 +++++++++--------- man/sqrt.interval.Rd | 30 +++++++++--------- man/sub-.interval.Rd | 30 +++++++++--------- man/subset-.interval.Rd | 34 ++++++++++---------- man/tail.interval.Rd | 30 +++++++++--------- 36 files changed, 426 insertions(+), 408 deletions(-)
Title: Model Averaging for Multivariate GLM with Null Models
Description: Tools for univariate and multivariate generalized linear models with model averaging and null model technique.
Author: Masatoshi Katabuchi and Akihiro Nakamura
Maintainer: Masatoshi Katabuchi <mattocci27@gmail.com>
Diff between mglmn versions 0.0.2 dated 2015-05-11 and 0.1.0 dated 2020-07-29
DESCRIPTION | 17 +++-- LICENSE |only MD5 | 35 ++++++---- NAMESPACE | 22 ++++-- R/best.vars.R | 41 +++++++++--- R/maglm.R | 163 +++++++++++++++++++++++++++++-------------------- R/make.formula.R | 42 +++++++++--- R/mamglm.R | 169 +++++++++++++++++++++++++++++++-------------------- R/mglmn.R |only R/ses.maglm.R | 108 ++++++++++++++++++++++---------- R/ses.mamglm.R | 128 +++++++++++++++++++++++++++----------- inst |only man/best.vars.Rd | 42 +++--------- man/maglm.Rd | 80 ++++++++---------------- man/make.formula.Rd | 47 ++++---------- man/mamglm.Rd | 87 ++++++++------------------ man/mglmn-package.Rd | 39 +++++------ man/ses.maglm.Rd | 112 +++++++++++++++------------------ man/ses.mamglm.Rd | 113 ++++++++++++++-------------------- tests |only 20 files changed, 677 insertions(+), 568 deletions(-)
Title: Hypothesis Matrix Translation
Description: Translation between experimental null hypotheses, hypothesis matrices, and contrast matrices as used in linear regression models. The package is based on the method described in Schad, Vasishth, Hohenstein, and Kliegl (2019) <doi:10.1016/j.jml.2019.104038> and Rabe, Vasishth, Hohenstein, Kliegl, and Schad (2020) <doi:10.21105/joss.02134>.
Author: Maximilian M. Rabe [aut, cre] (<https://orcid.org/0000-0002-2556-5644>),
Shravan Vasishth [aut] (<https://orcid.org/0000-0003-2027-1994>),
Sven Hohenstein [aut] (<https://orcid.org/0000-0002-9708-1593>),
Reinhold Kliegl [aut] (<https://orcid.org/0000-0002-0180-8488>),
Daniel J. Schad [aut] (<https://orcid.org/0000-0003-2586-6823>)
Maintainer: Maximilian M. Rabe <maximilian.rabe@uni-potsdam.de>
Diff between hypr versions 0.1.8 dated 2020-05-27 and 0.1.9 dated 2020-07-29
DESCRIPTION | 28 ++++++++++++++-------------- MD5 | 14 +++++++------- NAMESPACE | 1 + R/hypr.R | 34 ++++++++++++++++++++++++++++++---- README.md | 6 +++++- inst/doc/hypr-intro.html | 20 ++++++++++++++------ man/cmat.Rd | 12 ++++++++++++ man/ginv2.Rd | 2 +- 8 files changed, 84 insertions(+), 33 deletions(-)
Title: Geographically Weighted Non-Negative Principal Components
Analysis
Description: Implements a geographically weighted non-negative principal components analysis, which consists of the fusion of geographically weighted and sparse non-negative principal components analyses (Tsutsumida N. et al., (2019) <doi:10.17608/k6.auckland.9850826.v1>).
Author: Narumasa Tsutsumida [aut, cre]
(<https://orcid.org/0000-0002-6333-0301>)
Maintainer: Narumasa Tsutsumida <rsnaru.jp@gmail.com>
Diff between GWnnegPCA versions 0.0.1 dated 2020-03-24 and 0.0.2 dated 2020-07-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/gw_nsprcomp.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Mesh Topology and Visualization for Spatial Data
Description: Gives direct access to generic 3D tools and provides a full suite
of mesh-creation and 3D plotting functions. By extending the 'rgl' package
conversion and visualization functions for the 'mesh3d' class a wide variety of
complex spatial data can be brought into 3D scenes. These tools allow for
spatial raster, polygons, and lines that are common in 'GIS' contexts to be
converted into mesh forms with high flexibility and the ability to integrate
disparate data types. Vector and raster data can be seamlessly combined as
meshes, and surfaces can be set to have material properties based on data
values or with image textures. Textures and other data combinations use
projection transformations to map between coordinate systems, and objects can
be easily visualized in an interactive scene at any stage. This package relies
on the 'RTriangle' package for high-quality triangular meshing which is
licensed restrictively under 'CC BY-NC-SA 4.0'.
Author: Michael D. Sumner [aut, cre],
Miles McBain [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between anglr versions 0.6.0 dated 2020-05-13 and 0.7.0 dated 2020-07-29
DESCRIPTION | 12 MD5 | 45 - NAMESPACE | 2 NEWS.md | 23 R/DEL-model.R | 489 ++++++++++---------- R/anglr-package.R | 31 + R/as.mesh3d.R | 6 R/copy_down.R | 2 R/de-normalize.R | 7 R/mesh_plot.R | 25 - R/plot3d.R | 12 R/texture_mesh3d.R |only R/utils.R | 7 README.md | 62 -- build/vignette.rds |binary data/cst10.rda |only man/anglr-package.Rd | 10 man/as.mesh3d.Rd | 24 man/cst10.Rd |only man/dot3d.Rd | 8 man/mesh_plot.Rd | 11 man/persp3d.Rd | 2 man/shade3d.Rd | 4 man/wire3d.Rd | 4 tests/testthat/Rplots.pdf | 1112 ++++++++++++++++++++++++++-------------------- 25 files changed, 1054 insertions(+), 844 deletions(-)
Title: Access Reactive Data Interactively
Description: Troubleshooting reactive data in 'shiny' can be difficult. These functions will convert reactive data frames into functions and load all assigned objects into your local environment. If you create a dummy input object, as the function will suggest, you will be able to test your server and ui functions interactively.
Author: Jake Riley [aut, cre]
Maintainer: Jake Riley <rjake@sas.upenn.edu>
Diff between shinyobjects versions 0.1.1 dated 2020-06-26 and 0.2.0 dated 2020-07-29
shinyobjects-0.1.1/shinyobjects/R/for_server_files.R |only shinyobjects-0.1.1/shinyobjects/R/helper_functions.R |only shinyobjects-0.1.1/shinyobjects/R/load_reactive_objects.R |only shinyobjects-0.1.1/shinyobjects/R/runapp_shinyapp_innards.R |only shinyobjects-0.1.1/shinyobjects/R/source_editor_context.R |only shinyobjects-0.1.1/shinyobjects/R/utils-pipe.R |only shinyobjects-0.1.1/shinyobjects/tests/testthat/demo-r-runapp-full.R |only shinyobjects-0.1.1/shinyobjects/tests/testthat/test-char-between.R |only shinyobjects-0.1.1/shinyobjects/tests/testthat/test-runapp-shinyapp-innards.R |only shinyobjects-0.2.0/shinyobjects/DESCRIPTION | 12 shinyobjects-0.2.0/shinyobjects/MD5 | 79 +++--- shinyobjects-0.2.0/shinyobjects/NAMESPACE | 5 shinyobjects-0.2.0/shinyobjects/NEWS.md | 23 + shinyobjects-0.2.0/shinyobjects/R/convert-selection.R |only shinyobjects-0.2.0/shinyobjects/R/load-reactive-objects.R |only shinyobjects-0.2.0/shinyobjects/R/utilites-find-server-code.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-constants.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-evaluation.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-find-and-convert.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-input-code.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-pipe.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-prompts.R |only shinyobjects-0.2.0/shinyobjects/R/utilities-restart-session.R |only shinyobjects-0.2.0/shinyobjects/R/view_ui.R | 8 shinyobjects-0.2.0/shinyobjects/README.md | 127 ++++++---- shinyobjects-0.2.0/shinyobjects/build/vignette.rds |binary shinyobjects-0.2.0/shinyobjects/inst/Rmd/flexdashboard_demo.Rmd | 2 shinyobjects-0.2.0/shinyobjects/inst/WORDLIST | 1 shinyobjects-0.2.0/shinyobjects/man/convert_selection.Rd | 2 shinyobjects-0.2.0/shinyobjects/man/figures/convert_selection.png |only shinyobjects-0.2.0/shinyobjects/man/figures/load_reactive_objects.png |only shinyobjects-0.2.0/shinyobjects/man/figures/view_ui_after_output.png |only shinyobjects-0.2.0/shinyobjects/man/figures/view_ui_selection.png |only shinyobjects-0.2.0/shinyobjects/man/figures/youtube_thumbnail.png |only shinyobjects-0.2.0/shinyobjects/man/load_reactive_objects.Rd | 2 shinyobjects-0.2.0/shinyobjects/man/pipe.Rd | 2 shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-runapp-list.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-runapp-shinyapp_assigned.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-runapp-shinyapp_embedded.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-server-full.R | 20 + shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-server-no-input-list.R | 17 + shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-r-server-some-inputs.R | 17 + shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-rmd-full.Rmd | 11 shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-rmd-no-input-list.Rmd | 6 shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-rmd-not-reactive.Rmd | 1 shinyobjects-0.2.0/shinyobjects/tests/testthat/demo-rmd-some-inputs.Rmd | 8 shinyobjects-0.2.0/shinyobjects/tests/testthat/test-breakout-server-code.R | 33 +- shinyobjects-0.2.0/shinyobjects/tests/testthat/test-clean-code.R | 40 +-- shinyobjects-0.2.0/shinyobjects/tests/testthat/test-confirm-function.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/test-convert-selection.R | 19 - shinyobjects-0.2.0/shinyobjects/tests/testthat/test-load-reactive-objects.R | 8 shinyobjects-0.2.0/shinyobjects/tests/testthat/test-return-inner-expression.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/test-update-code.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/test-update-expression.R |only shinyobjects-0.2.0/shinyobjects/tests/testthat/test-validate-input.R | 22 + shinyobjects-0.2.0/shinyobjects/tests/testthat/test-view-ui.R | 18 + 56 files changed, 304 insertions(+), 179 deletions(-)
Title: Extracts Environmental Data from 'ERDDAP' Web Services
Description: Contains three functions that access
environmental data from any 'ERDDAP' data web service. The rxtracto() function extracts
data along a trajectory for a given "radius" around the point. The
rxtracto_3D() function extracts data in a box. The rxtractogon() function
extracts data in a polygon. All of those three function use the 'rerddap' package
to extract the data, and should work with any 'ERDDAP' server.
There are also two functions, plotBBox() and plotTrack() that use the 'plotdap'
package to simplify the creation of maps of the data.
Author: Roy Mendelssohn [aut, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapXtracto versions 0.4.8 dated 2020-06-12 and 1.0.0 dated 2020-07-29
DESCRIPTION | 12 MD5 | 20 - NEWS.md | 8 R/rxtracto.R | 461 +++++++++++++++++++++----------------- README.md | 39 +-- build/vignette.rds |binary inst/doc/UsingrerddapXtracto.R | 18 - inst/doc/UsingrerddapXtracto.Rmd | 93 ++----- inst/doc/UsingrerddapXtracto.html | 142 ++++------- man/rxtracto.Rd | 2 vignettes/UsingrerddapXtracto.Rmd | 93 ++----- 11 files changed, 410 insertions(+), 478 deletions(-)
More information about rerddapXtracto at CRAN
Permanent link
Title: Keyword Assisted Topic Model
Description: Fits keyword assisted topic models (keyATM) using collapsed Gibbs samplers. The keyATM combines the latent dirichlet allocation (LDA) models with a small number of keywords selected by researchers in order to improve the interpretability and topic classification of the LDA. The keyATM can also incorporate covariates and directly model time trends. The keyATM is proposed in Eshima, Imai, and Sasaki (2020) <arXiv:2004.05964>.
Author: Shusei Eshima [aut, cre] (<https://orcid.org/0000-0003-3613-4046>),
Tomoya Sasaki [aut],
William Lowe [ctb],
Kosuke Imai [aut],
Chung-hong Chan [ctb] (<https://orcid.org/0000-0002-6232-7530>),
Romain François [ctb] (<https://orcid.org/0000-0002-2444-4226>)
Maintainer: Shusei Eshima <shuseieshima@g.harvard.edu>
Diff between keyATM versions 0.3.0 dated 2020-07-12 and 0.3.1 dated 2020-07-29
DESCRIPTION | 16 ++- MD5 | 10 +- NEWS.md | 5 + R/posterior.R | 148 +++++++++++++++++++---------------- man/keyATM-package.Rd | 1 tests/testthat/test-Initialization.R | 7 - 6 files changed, 105 insertions(+), 82 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] (<https://orcid.org/0000-0002-7815-6318>),
Christoph Knopf [ctb],
Akshay Gupta [ctb],
Owen Jin [ctb] (Tidyverse variable/data manipulation functions),
Lushi Cai [ctb],
Yiwen He [ctb] (Dates/times and dataset manipulation),
Daniel Barnett [ctb] (Data validation)
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 1.8.5 dated 2020-05-19 and 1.9.0 dated 2020-07-29
iNZightTools-1.8.5/iNZightTools/tests/testthat/text_read_text.R |only iNZightTools-1.9.0/iNZightTools/DESCRIPTION | 10 +-- iNZightTools-1.9.0/iNZightTools/MD5 | 33 ++++++---- iNZightTools-1.9.0/iNZightTools/NAMESPACE | 5 + iNZightTools-1.9.0/iNZightTools/R/helpers.R | 13 +++ iNZightTools-1.9.0/iNZightTools/R/import_data.R | 25 +++++++ iNZightTools-1.9.0/iNZightTools/R/import_survey.R |only iNZightTools-1.9.0/iNZightTools/R/modelfitting.R | 15 ++++ iNZightTools-1.9.0/iNZightTools/R/read_text.R | 3 iNZightTools-1.9.0/iNZightTools/R/select_vars.R |only iNZightTools-1.9.0/iNZightTools/man/fitModel.Rd | 3 iNZightTools-1.9.0/iNZightTools/man/grapes-notin-grapes.Rd |only iNZightTools-1.9.0/iNZightTools/man/import_survey.Rd |only iNZightTools-1.9.0/iNZightTools/man/make_survey.Rd |only iNZightTools-1.9.0/iNZightTools/man/print.inzsvyspec.Rd |only iNZightTools-1.9.0/iNZightTools/man/selectVars.Rd |only iNZightTools-1.9.0/iNZightTools/man/smart_read.Rd | 12 +++ iNZightTools-1.9.0/iNZightTools/tests/testthat/test-read_text.R |only iNZightTools-1.9.0/iNZightTools/tests/testthat/test_helpers.R | 5 + iNZightTools-1.9.0/iNZightTools/tests/testthat/test_model_fitting.R | 26 +++++++ iNZightTools-1.9.0/iNZightTools/tests/testthat/test_select_vars.R |only iNZightTools-1.9.0/iNZightTools/tests/testthat/test_smart_read.R | 11 +++ iNZightTools-1.9.0/iNZightTools/tests/testthat/test_survey_design.R |only 23 files changed, 141 insertions(+), 20 deletions(-)
Title: Work with 'GitHub' 'Gists'
Description: Work with 'GitHub' 'gists' from 'R' (e.g.,
<https://en.wikipedia.org/wiki/GitHub#Gist>,
<https://docs.github.com/en/github/writing-on-github/creating-gists/>). A 'gist'
is simply one or more files with code/text/images/etc. This package allows
the user to create new 'gists', update 'gists' with new files, rename files,
delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists',
open a 'gist' in your default browser, get embed code for a 'gist', list
'gist' 'commits', and get rate limit information when 'authenticated'. Some
requests require authentication and some do not. 'Gists' website:
<https://gist.github.com/>.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Ramnath Vaidyanathan [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between gistr versions 0.5.0 dated 2020-01-09 and 0.9.0 dated 2020-07-29
gistr-0.5.0/gistr/inst/vign |only gistr-0.9.0/gistr/DESCRIPTION | 16 gistr-0.9.0/gistr/MD5 | 88 - gistr-0.9.0/gistr/NAMESPACE | 14 gistr-0.9.0/gistr/NEWS.md | 10 gistr-0.9.0/gistr/R/commits.R | 2 gistr-0.9.0/gistr/R/delete.R | 2 gistr-0.9.0/gistr/R/forks.R | 13 gistr-0.9.0/gistr/R/gist.R | 1 gistr-0.9.0/gistr/R/gist_auth.R | 6 gistr-0.9.0/gistr/R/gist_create.R | 6 gistr-0.9.0/gistr/R/gist_create_git.R | 28 gistr-0.9.0/gistr/R/gist_create_obj.R | 2 gistr-0.9.0/gistr/R/gistr-package.R | 8 gistr-0.9.0/gistr/R/gists.R | 3 gistr-0.9.0/gistr/R/rate_limit.R | 2 gistr-0.9.0/gistr/R/run.R | 10 gistr-0.9.0/gistr/R/star.R | 17 gistr-0.9.0/gistr/R/zzz.R | 63 gistr-0.9.0/gistr/README.md | 479 ------ gistr-0.9.0/gistr/build/vignette.rds |binary gistr-0.9.0/gistr/inst/doc/gistr.Rmd | 363 ++-- gistr-0.9.0/gistr/inst/doc/gistr.html | 1194 ++++++++-------- gistr-0.9.0/gistr/inst/examples/plots_imgur.md | 6 gistr-0.9.0/gistr/man/commits.Rd | 2 gistr-0.9.0/gistr/man/delete.Rd | 2 gistr-0.9.0/gistr/man/files.Rd | 2 gistr-0.9.0/gistr/man/fork.Rd | 11 gistr-0.9.0/gistr/man/forks.Rd | 2 gistr-0.9.0/gistr/man/gist.Rd | 3 gistr-0.9.0/gistr/man/gist_create.Rd | 14 gistr-0.9.0/gistr/man/gist_create_git.Rd | 8 gistr-0.9.0/gistr/man/gist_create_obj.Rd | 2 gistr-0.9.0/gistr/man/gistr-package.Rd | 2 gistr-0.9.0/gistr/man/gists.Rd | 5 gistr-0.9.0/gistr/man/rate_limit.Rd | 2 gistr-0.9.0/gistr/man/star.Rd | 2 gistr-0.9.0/gistr/man/update.Rd | 2 gistr-0.9.0/gistr/tests/testthat/test-commits.R | 5 gistr-0.9.0/gistr/tests/testthat/test-fork.R | 1 gistr-0.9.0/gistr/tests/testthat/test-gist.R | 5 gistr-0.9.0/gistr/tests/testthat/test-gist_create_git.R | 2 gistr-0.9.0/gistr/tests/testthat/test-gists.R | 5 gistr-0.9.0/gistr/vignettes/gistr.Rmd | 363 ++-- gistr-0.9.0/gistr/vignettes/gistr.Rmd.og |only 45 files changed, 1147 insertions(+), 1626 deletions(-)
Title: Functional Data Analysis and Empirical Dynamics
Description: A versatile package that provides implementation of various
methods of Functional Data Analysis (FDA) and Empirical Dynamics. The core of this
package is Functional Principal Component Analysis (FPCA), a key technique for
functional data analysis, for sparsely or densely sampled random trajectories
and time courses, via the Principal Analysis by Conditional Estimation
(PACE) algorithm. This core algorithm yields covariance and mean functions,
eigenfunctions and principal component (scores), for both functional data and
derivatives, for both dense (functional) and sparse (longitudinal) sampling designs.
For sparse designs, it provides fitted continuous trajectories with confidence bands,
even for subjects with very few longitudinal observations. PACE is a viable and
flexible alternative to random effects modeling of longitudinal data. There is also a
Matlab version (PACE) that contains some methods not available on fdapace and vice
versa. Updates to fdapace were supported by grants from NIH Echo and NSF DMS-1712864 and DMS-2014626. Please cite our package if you use it (You may run the command citation("fdapace") to get the citation format and bibtex entry).
References: Wang, J.L., Chiou, J., Müller, H.G. (2016) <doi:10.1146/annurev-statistics-041715-033624>;
Chen, K., Zhang, X., Petersen, A., Müller, H.G. (2017) <doi:10.1007/s12561-015-9137-5>.
Author: Cody Carroll [aut, cre] (<https://orcid.org/0000-0003-3525-8653>),
Alvaro Gajardo [aut],
Yaqing Chen [aut],
Xiongtao Dai [aut],
Jianing Fan [aut],
Pantelis Z. Hadjipantelis [aut],
Kyunghee Han [aut],
Hao Ji [aut],
Shu-Chin Lin [ctb],
Paromita Dubey [ctb],
Hans-Georg Mueller [cph, ths, aut],
Jane-Ling Wang [cph, ths, aut]
Maintainer: Cody Carroll <cjcarroll@ucdavis.edu>
Diff between fdapace versions 0.5.4 dated 2020-06-19 and 0.5.5 dated 2020-07-29
DESCRIPTION | 17 ++++++++--------- MD5 | 38 ++++++++++++++++++++++---------------- NAMESPACE | 3 +++ NEWS | 10 ++++++++++ R/DynCorr.R | 2 +- R/FAM.R | 3 ++- R/FLM.R | 3 ++- R/FPCA.R | 6 +++--- R/FPCquantile.R | 3 ++- R/GetCovSurface.R |only R/GetMeanCI.R |only R/GetMeanCurve.R |only R/MakeFPCAInputs.R | 27 ++++++++++++++++++++++++--- R/MultiFAM.R | 4 +++- R/predict.FPCA.R | 23 ++++++++++++++++------- man/DynCorr.Rd | 2 +- man/FPCA.Rd | 6 +++--- man/GetCovSurface.Rd |only man/GetMeanCI.Rd |only man/GetMeanCurve.Rd |only man/MakeFPCAInputs.Rd | 13 +++++++++++-- man/fdapace.Rd | 7 +++---- man/predict.FPCA.Rd | 11 +++++++---- 23 files changed, 121 insertions(+), 57 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut] (<https://orcid.org/0000-0002-7672-0712>)
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between BiodiversityR versions 2.11-3 dated 2019-10-03 and 2.12-1 dated 2020-07-29
DESCRIPTION | 14 - MD5 | 44 ++--- NAMESPACE | 1 R/BiodiversityRGUI.R | 1 R/accumcomp.R | 8 R/ensemble.PET.season.R |only R/ensemble.batch.R | 21 +- R/ensemble.calibrate.models.R | 26 ++- R/ensemble.calibrate.weights.R | 128 ++++++++++++++- R/ensemble.chull.R | 137 +++++++++++++++- R/ensemble.raster.R | 3 R/evaluation.strip.data.R | 9 - R/evaluation.strip.plot.R | 14 - R/ordisymbol.R | 5 R/rankabuncomp.R | 2 R/renyiplot.R | 2 inst/ChangeLog | 68 ++++++++ inst/etc/BiodiversityGUI.R | 341 ++++++++++++++++++++++++++++++++--------- man/ensemble.PET.season.Rd |only man/ensemble.Rd | 3 man/ensemble.ecocrop.Rd | 2 man/ensemble.red.Rd | 131 +++++++++++++++ man/evaluation.strip.Rd | 4 man/ordisymbol.Rd | 4 24 files changed, 816 insertions(+), 152 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-18 1.1.0
2016-09-07 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-30 0.9.8