Title: Hydrological Codes
Description: Pfafstetter Hydrological Codes
as cited in Verdin and Verdin (1999) <doi: 10.1016/S0022-1694(99)00011-6>
are decoded for upstream or downstream queries.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between HydroCode versions 1.0.1 dated 2020-01-24 and 1.0.2 dated 2020-08-31
HydroCode-1.0.1/HydroCode/data/datalist |only HydroCode-1.0.2/HydroCode/DESCRIPTION | 10 +++++----- HydroCode-1.0.2/HydroCode/MD5 | 15 +++++++-------- HydroCode-1.0.2/HydroCode/build/partial.rdb |binary HydroCode-1.0.2/HydroCode/data/rhineCCM2.rda |binary HydroCode-1.0.2/HydroCode/data/rhineHYBASlev08.rda |binary HydroCode-1.0.2/HydroCode/inst/NEWS.Rd | 6 ++++++ HydroCode-1.0.2/HydroCode/man/rhineCCM2.Rd | 6 ++++-- HydroCode-1.0.2/HydroCode/man/rhineHYBASlev08.Rd | 6 ++++-- 9 files changed, 26 insertions(+), 17 deletions(-)
Title: Automated Deconvolution Augmentation of Profiles for Tissue
Specific Cells
Description: Tools to construct (or add to) cell-type signature matrices using flow sorted or single cell samples and deconvolve bulk gene expression data.
Useful for assessing the quality of single cell RNAseq experiments, estimating the accuracy of signature matrices, and determining cell-type spillover.
Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1371/journal.pone.0224693>.
Author: Samuel A Danziger
Maintainer: Samuel A Danziger <sam.danziger@gmail.com>
Diff between ADAPTS versions 1.0.3 dated 2020-08-05 and 1.0.5 dated 2020-08-31
DESCRIPTION | 25 ++++++------------- LICENSE | 2 - MD5 | 24 ++++++++++++------ NAMESPACE | 2 + R/MakeSigMatrix.R | 46 ----------------------------------- R/onlyDeconAlgorithms.R | 7 ++++- R/runLoops.R |only README.md | 2 - build/vignette.rds |binary inst/doc/ADAPTS5.vignette.html |only inst/doc/ADAPTS5.vignette.html.asis |only man/buildSeed.Rd | 13 ++++++--- man/findConvergenceIter.Rd |only man/loopTillConvergence.Rd |only man/meanResults.Rd |only man/testAllSigMatrices.Rd |only vignettes/ADAPTS5.vignette.html.asis |only 17 files changed, 44 insertions(+), 77 deletions(-)
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 1.1.0 dated 2020-05-16 and 1.2.0 dated 2020-08-31
DESCRIPTION | 6 +- MD5 | 84 +++++++++++++++++----------------- NAMESPACE | 1 R/render-shiny-material-from-server.R |only R/shiny-material-button.R | 4 - R/shiny-material-card.R | 2 R/shiny-material-checkbox.R | 2 R/shiny-material-date-picker.R | 9 ++- R/shiny-material-dropdown.R | 2 R/shiny-material-file-input.R | 2 R/shiny-material-floating-button.R | 4 - R/shiny-material-modal.R | 4 - R/shiny-material-number-box.R | 2 R/shiny-material-page.R | 10 ++-- R/shiny-material-password-box.R | 2 R/shiny-material-radio-button.R | 2 R/shiny-material-side-nav-tabs.R | 6 +- R/shiny-material-side-nav.R | 2 R/shiny-material-slider.R | 2 R/shiny-material-switch.R | 2 R/shiny-material-text-box.R | 10 ++-- R/update-shiny-material-date-picker.R | 4 - R/update-shiny-material-dropdown.R | 2 inst/doc |only man/material_button.Rd | 4 - man/material_card.Rd | 2 man/material_checkbox.Rd | 2 man/material_date_picker.Rd | 9 ++- man/material_dropdown.Rd | 2 man/material_file_input.Rd | 2 man/material_floating_button.Rd | 4 - man/material_modal.Rd | 4 - man/material_number_box.Rd | 2 man/material_page.Rd | 10 ++-- man/material_password_box.Rd | 2 man/material_radio_button.Rd | 2 man/material_side_nav.Rd | 2 man/material_side_nav_tabs.Rd | 6 +- man/material_slider.Rd | 2 man/material_switch.Rd | 2 man/material_text_box.Rd | 8 ++- man/render_material_from_server.Rd |only man/update_material_date_picker.Rd | 4 - tests/app.R | 29 +++++++++-- tests/renderUI |only 45 files changed, 147 insertions(+), 115 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <gschneidz@gmail.com>
Diff between NSM3 versions 1.14 dated 2020-04-19 and 1.15 dated 2020-08-31
DESCRIPTION | 8 ++--- MD5 | 4 +- R/pUmbrPK.R | 84 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 48 insertions(+), 48 deletions(-)
Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and
regression tests for package mlt.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt.docreg versions 1.0-6 dated 2020-08-27 and 1.0-7 dated 2020-08-31
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS.Rd | 7 +++++++ inst/doc/mlt.R | 2 +- inst/doc/mlt.Rnw | 9 ++++++--- inst/doc/mlt.pdf |binary vignettes/mlt.Rnw | 9 ++++++--- 7 files changed, 30 insertions(+), 17 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Hothorn, 2019, <arxiv:1910.09219>).
Multivariate conditional transformation models (<arxiv:1906.03151>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Luisa Barbanti [aut],
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 0.4-0 dated 2020-05-13 and 0.5-0 dated 2020-08-31
DESCRIPTION | 13 ++++++++----- MD5 | 43 +++++++++++++++++++++++++------------------ NAMESPACE | 11 +++++++++-- R/methods.R | 21 +++++++++++++++++---- R/mmlt.R |only R/models.R | 35 +++++++++++++++++++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary demo/00Index | 1 + demo/undernutrition.R |only inst/NEWS.Rd | 18 ++++++++++++++++++ inst/doc/mtram.R | 13 +++++++++++-- inst/doc/mtram.Rnw | 14 ++++++++++++-- inst/doc/mtram.pdf |binary inst/doc/tram.R | 16 ++++++++++++---- inst/doc/tram.Rnw | 17 +++++++++++++---- inst/doc/tram.pdf |binary inst/simulations |only inst/undernutrition.RData |only man/Lehmann.Rd | 5 +++-- man/mmlt.Rd |only man/perm_test.Rd | 2 +- vignettes/mtram.Rnw | 14 ++++++++++++-- vignettes/tram.Rnw | 17 +++++++++++++---- 24 files changed, 186 insertions(+), 54 deletions(-)
Title: 'quadprog' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
by registering the 'quadprog' solver. It allows for solving quadratic programming (QP)
problems.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.quadprog versions 0.2-5 dated 2017-05-17 and 1.0-0 dated 2020-08-31
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- man/Example_01.Rd | 1 + 3 files changed, 12 insertions(+), 11 deletions(-)
More information about ROI.plugin.quadprog at CRAN
Permanent link
Title: Deep Time Redox Analysis of the Geobiology Ontology Network
Description: Create, visualize, manipulate, and analyze bipartite mineral-chemistry
networks for set of focal element(s) across deep-time on Earth. The method is
described in Spielman and Moore (2020) <doi:10.31223/osf.io/z7k9q>.
Author: Stephanie J. Spielman [aut, cre]
(<https://orcid.org/0000-0002-9090-4788>)
Maintainer: Stephanie J. Spielman <spielman@rowan.edu>
Diff between dragon versions 1.0.1 dated 2020-07-18 and 1.0.2 dated 2020-08-31
dragon-1.0.1/dragon/inst/dragon |only dragon-1.0.2/dragon/DESCRIPTION | 11 +-- dragon-1.0.2/dragon/MD5 | 23 +++---- dragon-1.0.2/dragon/NAMESPACE | 4 + dragon-1.0.2/dragon/R/app_ui.R | 2 dragon-1.0.2/dragon/R/fct_timeline.R | 13 ++-- dragon-1.0.2/dragon/R/utils_definitions.R | 42 +++++++++---- dragon-1.0.2/dragon/R/utils_names.R | 1 dragon-1.0.2/dragon/README.md | 27 ++++++-- dragon-1.0.2/dragon/build/vignette.rds |binary dragon-1.0.2/dragon/inst/doc/dragon.html | 10 +-- dragon-1.0.2/dragon/tests/testthat/test_prepare-med-data.R | 2 dragon-1.0.2/dragon/vignettes/dragon.bib | 2 13 files changed, 90 insertions(+), 47 deletions(-)
Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 1.1 dated 2020-05-16 and 1.2 dated 2020-08-31
DESCRIPTION | 10 MD5 | 81 +-- NAMESPACE | 4 R/RcppExports.R | 52 +- R/class_carcomp.R | 71 ++ R/class_plottest.R |only R/rand_compRand.R | 300 +++++------- R/rand_completeData.R | 12 R/rand_evalRand.R | 8 R/rand_generatingData.R | 26 - R/test_Rfunction.R | 371 +++++++-------- inst/NEWS.Rd | 12 man/AdjBCD.Rd | 3 man/AdjBCD.sim.Rd | 3 man/AdjBCD.ui.Rd | 3 man/CompPower.Rd | 96 +-- man/DoptBCD.Rd | 3 man/DoptBCD.sim.Rd | 3 man/DoptBCD.ui.Rd | 3 man/HuHuCAR.Rd | 3 man/HuHuCAR.sim.Rd | 3 man/HuHuCAR.ui.Rd | 3 man/PocSimMIN.Rd | 3 man/PocSimMIN.sim.Rd | 3 man/PocSimMIN.ui.Rd | 3 man/StrBCD.Rd | 3 man/StrBCD.sim.Rd | 3 man/StrBCD.ui.Rd | 3 man/StrPBR.Rd | 3 man/StrPBR.sim.Rd | 3 man/StrPBR.ui.Rd | 3 man/boot.test.Rd | 8 man/compRand.Rd | 161 +++--- man/corr.test.Rd | 2 man/evalPower.Rd | 128 ++--- man/evalRand.Rd | 3 man/evalRand.sim.Rd | 3 man/getData.Rd | 9 man/print.carandom.Rd | 12 man/rand.test.Rd | 14 src/All.cpp | 1171 +++++++++++++++++++++++++++++++----------------- src/RcppExports.cpp | 66 +- 42 files changed, 1541 insertions(+), 1133 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 1.2.0
2017-03-17 0.2.2
2017-01-10 0.2.0
2016-12-16 0.1.0
Title: Stationary Linear Models
Description: Provides statistical procedures for linear regression in the general context where the errors are assumed to be correlated. Different ways to estimate the asymptotic covariance matrix of the least squares estimators are available. Starting from this estimation of the covariance matrix, the confidence intervals and the usual tests on the parameters are modified. The functions of this package are very similar to those of 'lm': it contains methods such as summary(), plot(), confint() and predict(). The 'slm' package is described in the paper by E. Caron, J. Dedecker and B. Michel (2019), "Linear regression with stationary errors: the R package slm", arXiv preprint <arXiv:1906.06583>.
Author: Emmanuel Caron, Jérôme Dedecker, Bertrand Michel
Maintainer: Emmanuel Caron <emmanuelcaron3@gmail.com>
Diff between slm versions 1.1.0 dated 2019-10-24 and 1.2.0 dated 2020-08-31
DESCRIPTION | 6 +-- MD5 | 38 +++++++++++------------ R/auxiliary-fun.R | 12 +++---- R/generative.R | 6 +-- R/slm-main.R | 74 ++++++++++++++++++++++++++-------------------- R/slm-method.R | 12 +++---- man/Rboot.Rd | 12 +++---- man/confint.slm.Rd | 6 +-- man/cov_AR.Rd | 7 ++-- man/cov_efromovich.Rd | 2 - man/cov_kernel.Rd | 12 +++---- man/cov_method.Rd | 16 +++++---- man/cov_select.Rd | 2 - man/cov_spectralproj.Rd | 8 ++-- man/generative_model.Rd | 4 +- man/generative_process.Rd | 2 - man/predict.slm.Rd | 2 - man/slm-class.Rd | 6 ++- man/slm.Rd | 14 ++++---- man/summary.slm.Rd | 4 +- 20 files changed, 130 insertions(+), 115 deletions(-)
Title: 'SYMPHONY' Plug-in for the 'R' Optimization Interface
Description: Enhances the R Optimization Infrastructure ('ROI') package by registering
the 'SYMPHONY' open-source solver from the COIN-OR suite. It allows for
solving mixed integer linear programming (MILP) problems as well as all
variants/combinations of LP, IP.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.symphony versions 0.2-5 dated 2017-05-17 and 1.0-0 dated 2020-08-31
ROI.plugin.symphony-0.2-5/ROI.plugin.symphony/man |only ROI.plugin.symphony-1.0-0/ROI.plugin.symphony/DESCRIPTION | 15 ++++++-------- ROI.plugin.symphony-1.0-0/ROI.plugin.symphony/MD5 | 3 -- 3 files changed, 8 insertions(+), 10 deletions(-)
More information about ROI.plugin.symphony at CRAN
Permanent link
Title: Generic Coordinate System Transformations Using 'PROJ'
Description: A wrapper around the generic coordinate transformation software 'PROJ'
that transforms geospatial coordinates from one coordinate reference system ('CRS')
to another. This includes cartographic projections as well as geodetic transformations.
Version 7.1.0-1 or higher of the R package 'libproj' is required. The intention is for this
package to be used by user-packages such as 'reproj', and that the older 'PROJ.4' and version 5
pathways be provided by the 'proj4' package. Separating this disruptive version
change (from 4.0 and 5.0, to 6.0 and above) allows the use of existing and
stable code in 'proj4' alongside the new idioms and requirements of modern 'PROJ'. For control
of metadata files for the 'PROJ' library, see tools in the 'libproj' package.
Author: Michael D. Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>),
Jeroen Ooms [ctb] (provided PROJ library support on Windows, and
assistance with Windows configuration),
Simon Urbanek [cph, ctb] (wrote original code versions for PROJ version
6),
Dewey Dunnington [ctb] (key code contributions, and provided libproj to
improve things a lot)
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between PROJ versions 0.1.6 dated 2020-04-15 and 0.3.1 dated 2020-08-31
PROJ-0.1.6/PROJ/R/proj_create.R |only PROJ-0.1.6/PROJ/R/proj_trans_generic.R |only PROJ-0.1.6/PROJ/R/reproj_PROJ.R |only PROJ-0.1.6/PROJ/cleanup |only PROJ-0.1.6/PROJ/configure |only PROJ-0.1.6/PROJ/configure.ac |only PROJ-0.1.6/PROJ/man/proj_create.Rd |only PROJ-0.1.6/PROJ/man/proj_trans_generic.Rd |only PROJ-0.1.6/PROJ/src/C_proj_create.c |only PROJ-0.1.6/PROJ/src/C_proj_trans_generic.c |only PROJ-0.1.6/PROJ/src/C_set_data_dir.c |only PROJ-0.1.6/PROJ/src/Makevars.in |only PROJ-0.1.6/PROJ/src/Makevars.win |only PROJ-0.3.1/PROJ/DESCRIPTION | 34 - PROJ-0.3.1/PROJ/MD5 | 66 -- PROJ-0.3.1/PROJ/NAMESPACE | 15 PROJ-0.3.1/PROJ/NEWS.md | 42 + PROJ-0.3.1/PROJ/R/PROJ-package.R | 14 PROJ-0.3.1/PROJ/R/ok_proj6.R | 33 - PROJ-0.3.1/PROJ/R/proj_crs_text.R |only PROJ-0.3.1/PROJ/R/proj_trans.R |only PROJ-0.3.1/PROJ/R/zzz.R | 21 PROJ-0.3.1/PROJ/README.md | 644 +++++++++----------- PROJ-0.3.1/PROJ/build/vignette.rds |binary PROJ-0.3.1/PROJ/inst/WORDLIST | 25 PROJ-0.3.1/PROJ/inst/doc/PROJ.Rmd | 28 PROJ-0.3.1/PROJ/inst/doc/PROJ.html | 60 + PROJ-0.3.1/PROJ/man/PROJ-package.Rd | 12 PROJ-0.3.1/PROJ/man/figures/README-example-1.png |binary PROJ-0.3.1/PROJ/man/figures/README-example-2.png |binary PROJ-0.3.1/PROJ/man/figures/README-geocentric-1.png |binary PROJ-0.3.1/PROJ/man/proj_crs_text.Rd |only PROJ-0.3.1/PROJ/man/proj_trans.Rd |only PROJ-0.3.1/PROJ/src/C_proj_crs_text.c |only PROJ-0.3.1/PROJ/src/C_proj_trans.c |only PROJ-0.3.1/PROJ/src/init.c | 38 - PROJ-0.3.1/PROJ/src/libproj-impl.c |only PROJ-0.3.1/PROJ/tests/testthat/test-PROJ.R | 14 PROJ-0.3.1/PROJ/tests/testthat/test-create.R | 26 PROJ-0.3.1/PROJ/tests/testthat/test-no-crash.R | 20 PROJ-0.3.1/PROJ/tests/testthat/test-sanity-inputs.R | 58 - PROJ-0.3.1/PROJ/tools/winlibs.R | 2 PROJ-0.3.1/PROJ/vignettes/PROJ.Rmd | 28 PROJ-0.3.1/PROJ/vignettes/PROJ.Rmd.orig | 24 44 files changed, 575 insertions(+), 629 deletions(-)
Title: A Graphical EDA Tool
Description: An automated graphical exploratory data analysis (EDA) tool that introduces:
a.) wideplot() graphics for exploring the structure of a dataset through a grid of variables
and graphic types.
b.) longplot() graphics, which present the entire catalog of available graphics for representing
a particular variable using a grid of graphic types and variations on these types.
c.) plotup() function, which presents a particular graphic for a specific variable of a dataset.
The plotup() function also makes it possible to obtain the code used to generate the graphic,
meaning that the user can adjust its properties as needed.
Author: Pere Millán-Martínez [aut, cre],
Ramon Oller Piqué [ctb]
Maintainer: Pere Millán-Martínez <info@sciencegraph.org>
Diff between brinton versions 0.2.0 dated 2020-06-30 and 0.2.1 dated 2020-08-31
DESCRIPTION | 6 MD5 | 40 +-- NAMESPACE | 3 R/20_basic_plots.R | 14 - R/40_outputs.R | 92 ++++++ R/50_longplot.R | 21 - R/60_wideplot.R | 3 R/70_plotup.R | 26 + R/80_matrixplot.R |only README.md | 29 ++ build/vignette.rds |binary inst/doc/brinton.R | 22 - inst/doc/brinton.html | 44 +-- inst/doc/specimen.R | 112 ++++---- inst/doc/specimen.html | 143 +++++----- man/figures/README-plotup1-1.png |binary man/figures/README-plotup2-1.png |binary man/longplot.Rd | 81 +++--- man/matrixplot.Rd |only man/plotup.Rd | 92 +++--- man/wideplot.Rd | 487 ++++++++++++++++++------------------- vignettes/figures/fac-num_08-1.png |binary 22 files changed, 660 insertions(+), 555 deletions(-)
More information about shinyChakraSlider at CRAN
Permanent link
Title: Subroutines to Estimate Rolling Window Multiple Correlation
Description: Rolling Window Multiple Correlation ('RolWinMulCor') estimates the rolling (running) window correlation for the bi- and multi-variate cases between regular (sampled on identical time points) time series, with especial emphasis to ecological data (although this can be applied to other kinds of data sets). 'RolWinMulCor' is based on the concept of rolling, running or sliding window and is useful to evaluate the evolution of correlation through time and time-scales. 'RolWinMulCor' contains six functions. The first two focus on the bi-variate case: (1) rolwincor_1win() and (2) rolwincor_heatmap(), estimate the correlation coefficients and the their respective p-values for only one window-length (time-scale) and considering all possible window-lengths or a band of window-lengths, respectively. The second two functions: (3) rolwinmulcor_1win() and (4) rolwinmulcor_heatmap() are designed to analyze the multi-variate case, following the bi-variate case to visually display the results, but these two approaches are methodologically different: the multi-variate case estimates the adjusted coefficients of determination instead of the correlation coefficients. The last two functions: (5) plot_1win() and (6) plot_heatmap(), are used to represent graphically the outputs of the four aforementioned functions as simple plots or as heat maps. The functions contained in 'RolWinMulCor' are highly flexible since this contains several parameters to control the estimation of correlation and the features of the plot output, e.g. to remove the (linear) trend contained in the time series under analysis, to choose different p-value correction methods (which are used to address the multiple comparison problem) or to personalise the plot outputs. The 'RolWinMulCor' package also provides examples with synthetic and real-life ecological time series to exemplify its use. Methods derived from H. Abdi. (2007) <https://personal.utdallas.edu/~herve/Abdi-MCC2007-pretty.pdf>, J. M. Polanco-Martinez (2019) <doi:10.1007/s11071-019-04974-y>, and R. Telford (2013) <https://quantpalaeo.wordpress.com/2013/01/04/running-correlations-running-into-problems/>.
Author: Josue M. Polanco-Martinez [aut, cph, cre]
Maintainer: Josue M. Polanco-Martinez <josue.m.polanco@gmail.com>
Diff between RolWinMulCor versions 0.4.0 dated 2020-05-22 and 1.0.0 dated 2020-08-31
RolWinMulCor-0.4.0/RolWinMulCor/data/synthetic_data.rda |only RolWinMulCor-0.4.0/RolWinMulCor/man/synthetic_data.Rd |only RolWinMulCor-1.0.0/RolWinMulCor/DESCRIPTION | 10 RolWinMulCor-1.0.0/RolWinMulCor/MD5 | 32 RolWinMulCor-1.0.0/RolWinMulCor/NAMESPACE | 1 RolWinMulCor-1.0.0/RolWinMulCor/R/plot_1win.R |only RolWinMulCor-1.0.0/RolWinMulCor/R/plot_heatmap.R |only RolWinMulCor-1.0.0/RolWinMulCor/R/rolwincor_1win.R | 253 ++----- RolWinMulCor-1.0.0/RolWinMulCor/R/rolwincor_heatmap.R | 370 ++++------- RolWinMulCor-1.0.0/RolWinMulCor/R/rolwinmulcor_1win.R | 261 ++----- RolWinMulCor-1.0.0/RolWinMulCor/R/rolwinmulcor_heatmap.R | 402 ++++-------- RolWinMulCor-1.0.0/RolWinMulCor/data/syntDATA.rda |only RolWinMulCor-1.0.0/RolWinMulCor/man/RolWinMulCor-package.Rd | 64 - RolWinMulCor-1.0.0/RolWinMulCor/man/YX_ecological_data.Rd | 4 RolWinMulCor-1.0.0/RolWinMulCor/man/plot_1win.Rd |only RolWinMulCor-1.0.0/RolWinMulCor/man/plot_heatmap.Rd |only RolWinMulCor-1.0.0/RolWinMulCor/man/rolwincor_1win.Rd | 100 -- RolWinMulCor-1.0.0/RolWinMulCor/man/rolwincor_heatmap.Rd | 103 --- RolWinMulCor-1.0.0/RolWinMulCor/man/rolwinmulcor_1win.Rd | 98 -- RolWinMulCor-1.0.0/RolWinMulCor/man/rolwinmulcor_heatmap.Rd | 103 --- RolWinMulCor-1.0.0/RolWinMulCor/man/syntDATA.Rd |only 21 files changed, 609 insertions(+), 1192 deletions(-)
More information about RankAggregator at CRAN
Permanent link
Title: Many Objective Evolutionary Algorithm
Description: A set of evolutionary algorithms to solve many-objective optimization.
Hybridization between the algorithms are also facilitated. Available algorithms are:
'SMS-EMOA' <doi:10.1016/j.ejor.2006.08.008>
'NSGA-III' <doi:10.1109/TEVC.2013.2281535>
'MO-CMA-ES' <doi:10.1145/1830483.1830573>
The following many-objective benchmark problems are also provided:
'DTLZ1'-'DTLZ4' from Deb, et al. (2001) <doi:10.1007/1-84628-137-7_6> and
'WFG4'-'WFG9' from Huband, et al. (2005) <doi:10.1109/TEVC.2005.861417>.
Author: Dani Irawan [aut, cre] (<https://orcid.org/0000-0002-4213-941X>)
Maintainer: Dani Irawan <irawan_dani@yahoo.com>
Diff between MaOEA versions 0.5.2 dated 2019-10-28 and 0.6.2 dated 2020-08-31
DESCRIPTION | 12 MD5 | 76 +-- R/CMAES_main.R | 14 R/CMAES_steady.R | 6 R/NSGA3.r | 2 R/R2mtch.R | 5 R/SMSEMOA.r | 87 ++- R/WFG.R | 954 ++++++++++++++++++++-------------------- R/WFG_base.R | 54 +- R/cmaes_gen.R | 4 R/functions.R | 259 ++++++---- R/maoea.R | 70 ++ R/pygmo.R | 176 ++++++- README.md | 2 man/DTLZ1.Rd | 4 man/DTLZ2.Rd | 4 man/DTLZ3.Rd | 4 man/DTLZ4.Rd | 4 man/GetHVContribution.Rd | 15 man/GetHypervolume.Rd | 16 man/GetLeastContribution.Rd | 15 man/GetLeastContributor.Rd | 17 man/InitializePopulationLHS.Rd | 13 man/MOCMAES.Rd | 4 man/NSGA3.Rd | 2 man/SMOCMAES.Rd | 4 man/SMSEMOA.Rd | 14 man/WFG1.Rd | 2 man/WFG2.Rd | 2 man/WFG4.Rd | 2 man/WFG5.Rd | 2 man/WFG6.Rd | 2 man/WFG7.Rd | 2 man/WFG8.Rd | 2 man/WFG9.Rd | 2 man/cmaes_gen.Rd | 12 man/compute_R2HVC.Rd | 10 man/optimMaOEA.Rd | 21 tests/testthat/test.benchmark.R | 88 ++- 39 files changed, 1219 insertions(+), 765 deletions(-)
Title: Error Handling Made Easy
Description: Set of tools to facilitate package development and make R a more user-friendly place. Mostly for developers (or anyone who writes/shares functions). Provides a simple, powerful and flexible way to check the arguments passed to functions.
The developer can easily describe the type of argument needed. If the user provides a wrong argument, then an informative error message is prompted with the requested type and the problem clearly stated--saving the user a lot of time in debugging.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between dreamerr versions 1.2.0 dated 2020-06-08 and 1.2.1 dated 2020-08-31
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NEWS.md | 15 ++++++++++++++- R/check_arg.R | 26 ++++++++++++++------------ R/misc_funs.R | 7 ++----- build/vignette.rds |binary inst/doc/dreamerr_introduction.Rmd | 2 +- inst/doc/dreamerr_introduction.html | 23 +++++------------------ tests |only vignettes/dreamerr_introduction.Rmd | 2 +- 10 files changed, 51 insertions(+), 51 deletions(-)
Title: Automated Cleaning of Occurrence Records from Biological
Collections
Description: Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) doi:10.1111/2041-210X.13152.
Author: Alexander Zizka [aut, cre],
Daniele Silvestro [ctb],
Tobias Andermann [ctb],
Josue Azevedo [ctb],
Camila Duarte Ritter [ctb],
Daniel Edler [ctb],
Harith Farooq [ctb],
Andrei Herdean [ctb],
Maria Ariza [ctb],
Ruud Scharn [ctb],
Sten Svanteson [ctb],
Niklas Wengstrom [ctb],
Vera Zizka [ctb],
Alexandre Antonelli [ctb],
Irene Steves [rev] (Irene reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/210>),
Francisco Rodriguez-Sanchez [rev] (Francisco reviewed the package for
ropensci, see <https://github.com/ropensci/onboarding/issues/210>)
Maintainer: Alexander Zizka <alexander.zizka@idiv.de>
Diff between CoordinateCleaner versions 2.0-15 dated 2020-05-11 and 2.0-17 dated 2020-08-31
DESCRIPTION | 17 ++++++---- MD5 | 67 +++++++++++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 17 ++++++++++ R/CoordinateCleaner-package.R | 13 +++++--- R/cc_coun.R | 2 - R/cc_dupl.R | 3 - R/cc_equ.R | 3 - R/cc_gbif.R | 3 - R/cc_inst.R | 3 - R/cc_outl.R | 4 +- R/cc_sea.R | 3 - R/cd_round.R | 2 - R/clean_coordinates.R | 4 +- R/methods.spatialvalid.R | 13 ++++++-- README.md | 12 +++---- build |only data/countryref.rda |binary inst/doc |only man/cc_dupl.Rd | 4 -- man/cc_equ.Rd | 4 -- man/cc_gbif.Rd | 4 -- man/cc_inst.Rd | 4 -- man/cc_outl.Rd | 2 - man/cc_sea.Rd | 1 man/cd_round.Rd | 2 - man/clean_coordinates.Rd | 2 - man/countryref.Rd | 12 +++++-- man/plot.spatialvalid.Rd | 5 +++ vignettes |only 30 files changed, 117 insertions(+), 90 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt', 'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.2.2 dated 2020-06-26 and 4.2.3 dated 2020-08-31
cobalt-4.2.2/cobalt/inst/doc/cobalt_A0_basic_use.R |only cobalt-4.2.2/cobalt/inst/doc/cobalt_A0_basic_use.Rmd |only cobalt-4.2.2/cobalt/inst/doc/cobalt_A0_basic_use.html |only cobalt-4.2.2/cobalt/inst/figures |only cobalt-4.2.2/cobalt/vignettes/cobalt_A0_basic_use.Rmd |only cobalt-4.2.3/cobalt/DESCRIPTION | 9 cobalt-4.2.3/cobalt/MD5 | 111 +-- cobalt-4.2.3/cobalt/NEWS.md | 66 + cobalt-4.2.3/cobalt/R/SHARED.R | 104 +-- cobalt-4.2.3/cobalt/R/bal.sum.R | 8 cobalt-4.2.3/cobalt/R/base.bal.tab.R | 2 cobalt-4.2.3/cobalt/R/functions_for_processing.R | 332 +++++++-- cobalt-4.2.3/cobalt/R/get.w.R | 19 cobalt-4.2.3/cobalt/R/print.bal.tab.R | 24 cobalt-4.2.3/cobalt/R/utilities.R | 2 cobalt-4.2.3/cobalt/R/x2base.R | 58 - cobalt-4.2.3/cobalt/README.md | 52 - cobalt-4.2.3/cobalt/build/partial.rdb |binary cobalt-4.2.3/cobalt/build/vignette.rds |binary cobalt-4.2.3/cobalt/inst/doc/cobalt.R |only cobalt-4.2.3/cobalt/inst/doc/cobalt.Rmd |only cobalt-4.2.3/cobalt/inst/doc/cobalt.html |only cobalt-4.2.3/cobalt/inst/doc/cobalt_A1_other_packages.R | 18 cobalt-4.2.3/cobalt/inst/doc/cobalt_A1_other_packages.Rmd | 2 cobalt-4.2.3/cobalt/inst/doc/cobalt_A1_other_packages.html | 343 +++++----- cobalt-4.2.3/cobalt/inst/doc/cobalt_A2_segmented_data.html | 166 ++-- cobalt-4.2.3/cobalt/inst/doc/cobalt_A3_longitudinal_treat.html | 32 cobalt-4.2.3/cobalt/inst/doc/cobalt_A4_love.plot.Rmd | 2 cobalt-4.2.3/cobalt/inst/doc/cobalt_A4_love.plot.html | 10 cobalt-4.2.3/cobalt/man/bal.plot.Rd | 2 cobalt-4.2.3/cobalt/man/bal.tab.CBPS.Rd | 20 cobalt-4.2.3/cobalt/man/bal.tab.Match.Rd | 6 cobalt-4.2.3/cobalt/man/bal.tab.Rd | 19 cobalt-4.2.3/cobalt/man/bal.tab.cem.match.Rd | 14 cobalt-4.2.3/cobalt/man/bal.tab.default.Rd | 14 cobalt-4.2.3/cobalt/man/bal.tab.df.formula.Rd | 22 cobalt-4.2.3/cobalt/man/bal.tab.df.formula.list.Rd | 12 cobalt-4.2.3/cobalt/man/bal.tab.matchit.Rd | 12 cobalt-4.2.3/cobalt/man/bal.tab.mimids.Rd | 8 cobalt-4.2.3/cobalt/man/bal.tab.ps.Rd | 18 cobalt-4.2.3/cobalt/man/bal.tab.sbw.Rd | 8 cobalt-4.2.3/cobalt/man/bal.tab.weightit.Rd | 16 cobalt-4.2.3/cobalt/man/balance.summary.Rd | 2 cobalt-4.2.3/cobalt/man/class-bal.tab.cluster.Rd | 1 cobalt-4.2.3/cobalt/man/class-bal.tab.imp.Rd | 1 cobalt-4.2.3/cobalt/man/class-bal.tab.msm.Rd | 1 cobalt-4.2.3/cobalt/man/class-bal.tab.multi.Rd | 1 cobalt-4.2.3/cobalt/man/class-bal.tab.subclass.Rd | 1 cobalt-4.2.3/cobalt/man/display_options.Rd | 24 cobalt-4.2.3/cobalt/man/figures |only cobalt-4.2.3/cobalt/man/get.w.Rd | 13 cobalt-4.2.3/cobalt/man/lalonde.Rd | 4 cobalt-4.2.3/cobalt/man/love.plot.Rd | 4 cobalt-4.2.3/cobalt/man/print.bal.tab.Rd | 8 cobalt-4.2.3/cobalt/man/set.cobalt.options.Rd | 2 cobalt-4.2.3/cobalt/vignettes/cobalt.Rmd |only cobalt-4.2.3/cobalt/vignettes/cobalt_A1_other_packages.Rmd | 2 cobalt-4.2.3/cobalt/vignettes/cobalt_A4_love.plot.Rmd | 2 58 files changed, 918 insertions(+), 679 deletions(-)
Title: Parse Data of 'R' Code as an 'XML' Tree
Description: Convert the output of 'utils::getParseData()' to an 'XML'
tree, that one can search via 'XPath', and easier to manipulate in
general.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between xmlparsedata versions 1.0.3 dated 2019-09-27 and 1.0.4 dated 2020-08-31
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/package.R | 11 +++++++---- README.md | 6 +++--- tests/testthat/test.R | 12 ++++++++++++ 6 files changed, 38 insertions(+), 15 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou, Kleanthi Lakiotaki and Christina Chatzipantsiou.
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast versions 1.9.9 dated 2020-03-08 and 2.0.0 dated 2020-08-31
Rfast-1.9.9/Rfast/man/Rfast-package.Rd |only Rfast-2.0.0/Rfast/DESCRIPTION | 8 Rfast-2.0.0/Rfast/MD5 | 189 +++++----- Rfast-2.0.0/Rfast/NAMESPACE | 2 Rfast-2.0.0/Rfast/NEWS.md | 44 ++ Rfast-2.0.0/Rfast/R/col_mle.R | 9 Rfast-2.0.0/Rfast/R/directional_mle.R | 6 Rfast-2.0.0/Rfast/R/dirknn.cv.R | 33 + Rfast-2.0.0/Rfast/R/knn.cv.R | 39 +- Rfast-2.0.0/Rfast/R/many_regression_models_correlations.R | 2 Rfast-2.0.0/Rfast/R/matrix.R | 12 Rfast-2.0.0/Rfast/R/nth.R | 12 Rfast-2.0.0/Rfast/R/positive_mle.R | 2 Rfast-2.0.0/Rfast/R/random_values_simulation.R | 19 - Rfast-2.0.0/Rfast/R/variable_selection.R | 58 ++- Rfast-2.0.0/Rfast/R/vartest.R | 2 Rfast-2.0.0/Rfast/README.md | 2 Rfast-2.0.0/Rfast/inst/include/Rfast/matrix.hpp | 132 +++++-- Rfast-2.0.0/Rfast/inst/include/Rfast/templates.h | 62 +++ Rfast-2.0.0/Rfast/inst/include/Rfast/vector.hpp | 46 +- Rfast-2.0.0/Rfast/man/AddToNamespace.Rd | 2 Rfast-2.0.0/Rfast/man/colVars.Rd | 3 Rfast-2.0.0/Rfast/man/colnormal.mle.Rd | 2 Rfast-2.0.0/Rfast/man/colnth.Rd | 11 Rfast-2.0.0/Rfast/man/mat.mult.Rd | 19 - Rfast-2.0.0/Rfast/man/multinom.reg.Rd | 2 Rfast-2.0.0/Rfast/man/odds.Rd | 12 Rfast-2.0.0/Rfast/man/ompr.Rd | 20 - Rfast-2.0.0/Rfast/src/Diag.cpp | 8 Rfast-2.0.0/Rfast/src/Norm.cpp | 2 Rfast-2.0.0/Rfast/src/Rank.cpp | 2 Rfast-2.0.0/Rfast/src/Sort.cpp | 10 Rfast-2.0.0/Rfast/src/Table.cpp | 10 Rfast-2.0.0/Rfast/src/add_to_namespace.cpp | 12 Rfast-2.0.0/Rfast/src/apply_condition.cpp | 2 Rfast-2.0.0/Rfast/src/as_integer.cpp | 2 Rfast-2.0.0/Rfast/src/binarysearch.cpp | 4 Rfast-2.0.0/Rfast/src/bincomb.cpp | 2 Rfast-2.0.0/Rfast/src/check.cpp | 12 Rfast-2.0.0/Rfast/src/cholesky.cpp | 4 Rfast-2.0.0/Rfast/src/col_row_utilities.cpp | 227 +++++++----- Rfast-2.0.0/Rfast/src/col_row_utilities_p.cpp | 30 - Rfast-2.0.0/Rfast/src/col_statistical.cpp | 4 Rfast-2.0.0/Rfast/src/colrint_mle.cpp | 2 Rfast-2.0.0/Rfast/src/colweibull_mle.cpp | 2 Rfast-2.0.0/Rfast/src/design_matrix.cpp | 4 Rfast-2.0.0/Rfast/src/dir_knn.cpp | 2 Rfast-2.0.0/Rfast/src/diri_nr_type2.cpp | 2 Rfast-2.0.0/Rfast/src/dista.cpp | 6 Rfast-2.0.0/Rfast/src/dists.cpp | 2 Rfast-2.0.0/Rfast/src/dists_vec.cpp | 2 Rfast-2.0.0/Rfast/src/each.cpp | 40 +- Rfast-2.0.0/Rfast/src/eigs_sym_c.cpp | 2 Rfast-2.0.0/Rfast/src/energy.cpp | 2 Rfast-2.0.0/Rfast/src/floyd_john.cpp | 2 Rfast-2.0.0/Rfast/src/frame_to_matrix.cpp | 2 Rfast-2.0.0/Rfast/src/g2_export.cpp | 18 Rfast-2.0.0/Rfast/src/gamma.cpp | 12 Rfast-2.0.0/Rfast/src/geom_regs.cpp | 2 Rfast-2.0.0/Rfast/src/glm.cpp | 10 Rfast-2.0.0/Rfast/src/group.cpp | 40 +- Rfast-2.0.0/Rfast/src/hash.cpp | 8 Rfast-2.0.0/Rfast/src/init.c | 18 Rfast-2.0.0/Rfast/src/is.cpp | 6 Rfast-2.0.0/Rfast/src/logistic_only.cpp | 255 +++++++------- Rfast-2.0.0/Rfast/src/lower_upper_tri.cpp | 16 Rfast-2.0.0/Rfast/src/matrices.cpp | 18 Rfast-2.0.0/Rfast/src/multinom_regs.cpp | 2 Rfast-2.0.0/Rfast/src/normlog_reg.cpp | 2 Rfast-2.0.0/Rfast/src/normlog_regs.cpp | 2 Rfast-2.0.0/Rfast/src/odds_helper.cpp | 4 Rfast-2.0.0/Rfast/src/partial_sort.cpp | 4 Rfast-2.0.0/Rfast/src/permutation.cpp | 6 Rfast-2.0.0/Rfast/src/positive_negative.cpp | 6 Rfast-2.0.0/Rfast/src/prop.cpp | 4 Rfast-2.0.0/Rfast/src/qpois.cpp | 4 Rfast-2.0.0/Rfast/src/rbing.cpp | 2 Rfast-2.0.0/Rfast/src/read.cpp | 4 Rfast-2.0.0/Rfast/src/rep.cpp | 4 Rfast-2.0.0/Rfast/src/rint.cpp | 6 Rfast-2.0.0/Rfast/src/rmdp.cpp | 2 Rfast-2.0.0/Rfast/src/rvmf_h.cpp | 2 Rfast-2.0.0/Rfast/src/sort_mat.cpp | 2 Rfast-2.0.0/Rfast/src/sort_unique.cpp | 6 Rfast-2.0.0/Rfast/src/spat_med.cpp | 2 Rfast-2.0.0/Rfast/src/spml.cpp | 6 Rfast-2.0.0/Rfast/src/system_files.cpp | 7 Rfast-2.0.0/Rfast/src/system_files.h | 4 Rfast-2.0.0/Rfast/src/topological_sort.cpp | 4 Rfast-2.0.0/Rfast/src/total_dista.cpp | 2 Rfast-2.0.0/Rfast/src/total_dists.cpp | 2 Rfast-2.0.0/Rfast/src/utilities.cpp | 79 ++-- Rfast-2.0.0/Rfast/src/varcomps_mle.cpp | 2 Rfast-2.0.0/Rfast/src/vecdist.cpp | 2 Rfast-2.0.0/Rfast/src/weib_reg.cpp | 2 Rfast-2.0.0/Rfast/src/weibull_mle.cpp | 2 96 files changed, 1046 insertions(+), 684 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 3,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.51 dated 2020-07-21 and 1.52 dated 2020-08-31
DESCRIPTION | 10 MD5 | 27 NEWS | 8 R/EZR.R | 944 +++++++++++++---- inst/CHANGES | 8 inst/CITATION | 2 inst/doc/ezr.htm | 10 inst/doc/ezr.pdf |binary inst/etc/menus.txt | 26 inst/etc/menus.txt.262 |only inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 15 man/IPTW.ATE.Rd | 4 man/Mantel.Byar.Rd | 6 po/R-RcmdrPlugin.EZR.po | 1549 +++++++++++++++++++++++----- 15 files changed, 2160 insertions(+), 449 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
François Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between questionr versions 0.7.1 dated 2020-05-26 and 0.7.2 dated 2020-08-31
questionr-0.7.1/questionr/man/lookfor.Rd |only questionr-0.7.2/questionr/DESCRIPTION | 20 - questionr-0.7.2/questionr/MD5 | 44 +-- questionr-0.7.2/questionr/NEWS.md | 6 questionr-0.7.2/questionr/R/addNAstr.R | 2 questionr-0.7.2/questionr/R/datasets.R | 6 questionr-0.7.2/questionr/R/describe.R | 13 - questionr-0.7.2/questionr/R/lookfor.R | 48 ---- questionr-0.7.2/questionr/R/odds.ratio.R | 4 questionr-0.7.2/questionr/build/vignette.rds |binary questionr-0.7.2/questionr/data/fecondite.RData |binary questionr-0.7.2/questionr/data/fertility.RData |binary questionr-0.7.2/questionr/data/happy.RData |binary questionr-0.7.2/questionr/data/hdv2003.RData |binary questionr-0.7.2/questionr/data/rp2012.RData |binary questionr-0.7.2/questionr/data/rp99.RData |binary questionr-0.7.2/questionr/inst/doc/recoding_addins.html | 186 +++++++++++++++- questionr-0.7.2/questionr/man/addNAstr.Rd | 2 questionr-0.7.2/questionr/man/describe.Rd | 9 questionr-0.7.2/questionr/man/hdv2003.Rd | 2 questionr-0.7.2/questionr/man/odds.ratio.Rd | 2 questionr-0.7.2/questionr/man/reexports.Rd |only questionr-0.7.2/questionr/man/rp2012.Rd | 2 questionr-0.7.2/questionr/man/rp99.Rd | 2 24 files changed, 249 insertions(+), 99 deletions(-)
Title: Monitoring Convergence of EU Countries
Description: Indicators and measures by country and time describe
what happens at economic and social levels. This package provides
functions to calculate several measures of convergence after imputing
missing values. The automated downloading of Eurostat data,
followed by the production of country fiches and indicator fiches,
makes possible to produce automated reports.
The Eurofound report (<doi:10.2806/68012>)
"Upward convergence in the EU: Concepts, measurements and indicators",
2018, is a detailed presentation of convergence.
Author: Federico M. Stefanini [arc, aut, cre],
Massimiliano Mascherini [arc],
Eleonora Peruffo [ctb],
Nedka Nikiforova [ctb],
Chiara Litardi [ctb]
Maintainer: Federico M. Stefanini <federico.stefanini@unifi.it>
Diff between convergEU versions 0.4.7 dated 2020-06-11 and 0.5.0 dated 2020-08-31
DESCRIPTION | 19 +++++--- MD5 | 22 +++++----- NEWS.md | 17 +++++++ R/beta_conv.R | 14 +++--- build/vignette.rds |binary inst/doc/PATTERNS-CONV.html | 18 +++++++- inst/doc/measuring-convergence.html | 18 +++++++- inst/extdata/country_fi_2.Rmd | 36 ++++++++-------- inst/extdata/indica_fi_2.Rmd | 39 ++++++++++-------- inst/extdata/indica_fi_2_delta.Rmd | 10 +--- tests/testthat/test_convergence.R | 78 ++++++++++++++++++++++++++++++++++++ tests/testthat/test_go_indica_fi.R | 66 ++++++++++++++++++++++++++++++ 12 files changed, 268 insertions(+), 69 deletions(-)
Title: Bayesian "Now-Cast" Estimation of Event Probabilities in
Multi-Party Democracies
Description: An implementation of a Bayesian framework for the opinion poll
based estimation of event probabilities in multi-party electoral systems
(Bender and Bauer (2018) <doi:10.21105/joss.00606>).
Author: Andreas Bender [aut, cre] (<https://orcid.org/0000-0001-5628-8611>),
Alexander Bauer [aut] (<https://orcid.org/0000-0003-3495-5131>)
Maintainer: Andreas Bender <bender.at.R@gmail.com>
Diff between coalitions versions 0.6.12 dated 2020-02-06 and 0.6.15 dated 2020-08-31
coalitions-0.6.12/coalitions/build |only coalitions-0.6.12/coalitions/inst/doc |only coalitions-0.6.12/coalitions/vignettes |only coalitions-0.6.15/coalitions/DESCRIPTION | 16 +-- coalitions-0.6.15/coalitions/MD5 | 53 ++++-------- coalitions-0.6.15/coalitions/NAMESPACE | 2 coalitions-0.6.15/coalitions/NEWS.md | 7 + coalitions-0.6.15/coalitions/R/coalition-probability.R | 11 +- coalitions-0.6.15/coalitions/R/draw-from-posterior.R | 4 coalitions-0.6.15/coalitions/R/scrapers.R | 15 +++ coalitions-0.6.15/coalitions/R/utils-pipe.R | 2 coalitions-0.6.15/coalitions/README.md | 4 coalitions-0.6.15/coalitions/inst/CITATION | 2 coalitions-0.6.15/coalitions/man/get_superior.Rd | 20 ---- coalitions-0.6.15/coalitions/man/get_surveys.Rd | 15 +++ coalitions-0.6.15/coalitions/man/have_majority.Rd | 3 coalitions-0.6.15/coalitions/man/party_colors_de.Rd | 6 - coalitions-0.6.15/coalitions/man/party_labels_de.Rd | 6 - coalitions-0.6.15/coalitions/man/paste_coalitions.Rd | 3 coalitions-0.6.15/coalitions/man/pipe.Rd | 2 coalitions-0.6.15/coalitions/man/pool_austria.Rd | 4 coalitions-0.6.15/coalitions/man/scrape.Rd | 2 coalitions-0.6.15/coalitions/man/surveys_sample.Rd | 6 - coalitions-0.6.15/coalitions/tests/testthat/test-scrapers.R | 2 24 files changed, 99 insertions(+), 86 deletions(-)
Title: Miscellaneous Functions for Working with 'stars' Rasters
Description: Miscellaneous functions for working with 'stars' objects, mainly single-band rasters. Currently includes functions for: (1) focal filtering, (2) detrending of Digital Elevation Models, (3) calculating flow length, (4) calculating the Convergence Index, (5) calculating topographic aspect and topographic slope.
Author: Michael Dorman [aut, cre]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between starsExtra versions 0.1.0 dated 2020-06-25 and 0.1.2 dated 2020-08-31
DESCRIPTION | 6 +++--- MD5 | 42 ++++++++++++++++++++++++------------------ NAMESPACE | 2 ++ NEWS.md | 13 +++++++++---- R/CI.R | 4 ++++ R/aspect.R | 3 +-- R/checks.R | 36 ++++++++++++++++++++++++------------ R/data.R | 11 +++++++++++ R/detrend.R | 4 ++-- R/flowlength.R | 6 ++---- R/focal2.R | 3 +-- R/layer_to_matrix.R | 3 +-- R/layer_to_vector.R | 3 +-- R/slope.R | 3 +-- R/st_normalize_2d.R |only R/st_normalize_3d.R |only R/trim.R | 2 +- data/landsat.rda |only inst/doc/intro.R | 3 ++- inst/doc/intro.Rmd | 3 ++- inst/doc/intro.html | 10 +++++----- man/landsat.Rd |only man/normalize_2d.Rd |only man/normalize_3d.Rd |only vignettes/intro.Rmd | 3 ++- 25 files changed, 98 insertions(+), 62 deletions(-)
Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') <doi:10.18637/jss.v094.i15>
is a sophisticated framework for handling optimization problems in R.
Additional information can be found on the 'ROI' homepage <http://roi.r-forge.r-project.org/>.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI versions 0.3-3 dated 2020-03-01 and 1.0-0 dated 2020-08-31
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- R/OP.R | 3 +++ R/constraints.R | 11 +++++++++-- R/doc_data.R | 2 +- R/roi.R | 3 +++ inst |only 7 files changed, 28 insertions(+), 14 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. Also provided
are functions for making inferences about the extremal index, using
the K-gaps model of Suveges and Davison (2010) <doi:10.1214/09-AOAS292>.
Also provided are d,p,q,r functions for the Generalised Extreme Value
('GEV') and Generalised Pareto ('GP') distributions that deal
appropriately with cases where the shape parameter is very close to zero.
Author: Paul J. Northrop [aut, cre, cph],
Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.3.7 dated 2020-06-26 and 1.3.8 dated 2020-08-31
DESCRIPTION | 20 +++--- MD5 | 37 ++++++----- NAMESPACE | 3 NEWS.md | 8 ++ R/frequentist.R | 81 ++++++++++++++++++++++++-- R/init.R | 2 R/priors.R | 3 R/rprior.R | 2 R/sample_diagnostics.R | 4 - inst/doc/revdbayes-a-vignette.html | 12 +-- inst/doc/revdbayes-b-using-rcpp-vignette.Rmd | 4 - inst/doc/revdbayes-b-using-rcpp-vignette.html | 44 +++++++------- inst/doc/revdbayes-c-predictive-vignette.html | 6 - inst/doc/revdbayes-d-kgaps-vignette.html | 4 - man/gp_lrs.Rd |only man/gp_pwm.Rd |only man/grimshaw_gp_mle.Rd |only man/rprior_prob.Rd | 2 man/set_prior.Rd | 3 vignettes/revdbayes-b-using-rcpp-vignette.Rmd | 4 - vignettes/revdbayes.bib | 4 - 21 files changed, 165 insertions(+), 78 deletions(-)
Title: An Interface for Content-Based Identifiers
Description: An interface for creating, registering, and resolving content-based
identifiers for data management. Content-based identifiers rely on
the 'cryptographic' hashes to refer to the files they identify, thus,
anyone possessing the file can compute the identifier using a
well-known standard algorithm, such as 'SHA256'. By registering
a URL at which the content is accessible to a public archive, such
as <https://hash-archive.org>, the content identifier can serve
many functions typically associated with A Digital Object Identifier
('DOI'). Unlike location-based identifiers like 'DOIs', content-based
identifiers permit the same content to be registered in many locations.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>),
Jorrit Poelen [aut] (<https://orcid.org/0000-0003-3138-4118>),
NSF OAC 1839201 [fnd]
(https://www.nsf.gov/awardsearch/showAward?AWD_ID=1839201)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between contentid versions 0.0.5 dated 2020-08-27 and 0.0.6 dated 2020-08-31
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/store.R | 2 ++ man/store.Rd | 2 ++ tests/testthat/test-lmdb_registry.R | 7 +++++-- 6 files changed, 21 insertions(+), 10 deletions(-)
Title: Basic R Input Output
Description: Functions to handle basic input output, these functions always
read and write UTF-8 (8-bit Unicode Transformation Format) files and provide
more explicit control over line endings.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between brio versions 1.0.0 dated 2020-03-26 and 1.1.0 dated 2020-08-31
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++++--------- NAMESPACE | 1 + NEWS.md |only R/read_lines.R | 2 ++ R/write_file.R |only R/write_lines.R | 13 +++++++++++++ man/read_lines.Rd | 3 +++ man/write_file.Rd |only man/write_lines.Rd | 9 +++++++++ src/init.c | 2 ++ src/read_file.c | 3 +++ src/read_lines.c | 29 ++++++++++++++++------------- src/write_file.c |only tests/testthat/test-write_file.R |only 15 files changed, 67 insertions(+), 26 deletions(-)
Title: Calculate Concentration and Dispersion in Ordered Rating Scales
Description: Calculates concentration and dispersion in ordered rating scales. It implements various measures of concentration and dispersion to describe what researchers variably call agreement, concentration, consensus, dispersion, or polarization among respondents in ordered data. It also implements other related measures to classify distributions. In addition to a generic city-block based concentration measure and a generic dispersion measure, the package implements various measures, including van der Eijk's (2001) <DOI: 10.1023/A:1010374114305> measure of agreement A, measures of concentration by Leik, Tatsle and Wierman, Blair and Lacy, Kvalseth, Berry and Mielke, Reardon, and Garcia-Montalvo and Reynal-Querol. Furthermore, the package provides an implementation of Galtungs AJUS-system to classify distributions, as well as a function to identify the position of multiple modes.
Author: Didier Ruedin [aut, cre]
Clem Aeppli [ctb]
Maintainer: Didier Ruedin <didier.ruedin@unine.ch>
Diff between agrmt versions 1.40.4 dated 2016-04-02 and 1.42.4 dated 2020-08-31
DESCRIPTION | 23 - LICENSE |only MD5 | 63 +++- NEWS | 62 ++++ R/D.variance.R |only R/Reardon.R |only R/agreementError.R | 2 R/censor.R |only R/collapse.R | 25 + R/compareAgreement.R | 2 R/concentration.R |only R/consensus.variance.R |only R/disper.R |only R/dispersion.R |only R/l.variance.R |only R/lsquared.R | 6 R/lsquared.variance.R |only R/sd.variance.R |only R/truncatevector.R |only R/var.variance.R |only build/vignette.rds |binary inst/doc/agrmt.R | 34 +- inst/doc/agrmt.Rnw | 642 +++++++++++++++++++++++----------------------- inst/doc/agrmt.pdf |binary man/D.variance.Rd |only man/Reardon.Rd |only man/agreement.Rd | 10 man/agreementError.Rd | 14 - man/agrmt-package.Rd | 14 - man/ajus.Rd | 6 man/ajusCheck.Rd | 2 man/ajusPlot.Rd | 2 man/censor.Rd |only man/concentration.Rd |only man/consensus.variance.Rd |only man/disper.Rd |only man/dispersion.Rd |only man/l.variance.Rd |only man/lsquared.variance.Rd |only man/polarization.Rd | 2 man/sd.variance.Rd |only man/truncatevector.Rd |only man/var.variance.Rd |only vignettes/agrmt.Rnw | 642 +++++++++++++++++++++++----------------------- vignettes/agrmt.bib | 13 45 files changed, 854 insertions(+), 710 deletions(-)
Title: Utilities for Sampling
Description: Interactive tools for generating random samples. Users select an
.xlsx or .csv file with population data and are walked through selecting the
sample type (Simple Random Sample or Stratified), the number of backups
desired, and a "stratify_on" value (if desired). An .xlsx file is created
with the sample and key metadata for reference. It is menu-driven and lets
users pick an output directory. See vignettes for a detailed walk-through.
Author: Paul West [aut, cre]
Maintainer: Paul West <fp8049@gmail.com>
Diff between whSample versions 0.8.9 dated 2020-08-28 and 0.9.0 dated 2020-08-31
DESCRIPTION | 9 ++---- MD5 | 20 ++++++------- NAMESPACE | 8 +++-- R/sampler.R | 50 +++++++++++++++------------------- README.md | 9 +++--- inst/doc/Using_sampler.R | 2 - inst/doc/Using_sampler.Rmd | 12 +++----- inst/doc/Using_sampler.html | 11 +++---- man/sampler.Rd | 64 ++++++++++++++++++++++---------------------- man/ssize.Rd | 64 ++++++++++++++++++++++---------------------- vignettes/Using_sampler.Rmd | 12 +++----- 11 files changed, 127 insertions(+), 134 deletions(-)
Title: Interface to 'typeform' Results
Description: An R interface to the 'typeform'
<https://typeform.com> application program interface. Also provides
functions for downloading your results.
Author: Colin Gillespie [aut, cre],
Jamie Owen [aut]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between rtypeform versions 2.0.1 dated 2020-03-23 and 2.1.0 dated 2020-08-31
DESCRIPTION | 27 ++++++++++++++++----------- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS.md | 28 +++++++++++++++++----------- R/get_forms.R | 20 +++++++++++--------- R/get_responses.R | 19 +++++++++---------- R/rest_argument_formatting.R | 3 +-- R/themes.R | 5 ++--- R/workspaces.R | 7 ++++--- README.md | 12 ++++++------ man/get_responses.Rd | 2 +- tests/testthat/test_get_responses.R | 15 ++++++++++++++- 12 files changed, 93 insertions(+), 68 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data
econometrics, as described in Baltagi (2013) Econometric Analysis of Panel Data, ISBN-13:978-1-118-67232-7,
Hsiao (2014) Analysis of Panel Data <doi:10.1017/CBO9781139839327> and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN:978-1-118-94918-4.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 2.2-3 dated 2020-02-28 and 2.2-4 dated 2020-08-31
plm-2.2-3/plm/tests/test_R2_adj_R2.Rout.save |only plm-2.2-3/plm/tests/test_as.data.frame_as.matrix.Rout.save |only plm-2.2-3/plm/tests/test_as.list.pdata.frame.Rout.save |only plm-2.2-3/plm/tests/test_clubSandwich_interoperability.Rout.save |only plm-2.2-3/plm/tests/test_detect_lin_dep_alias.Rout.save |only plm-2.2-3/plm/tests/test_fitted.plm.Rout.save |only plm-2.2-3/plm/tests/test_fixef.Rout.save |only plm-2.2-3/plm/tests/test_fixef_comp_lm_plm.Rout.save |only plm-2.2-3/plm/tests/test_is.pconsecutive.Rout.save |only plm-2.2-3/plm/tests/test_make.pconsecutive_pbalanced.Rout.save |only plm-2.2-3/plm/tests/test_misc.Rout.save |only plm-2.2-3/plm/tests/test_model.frame.Rout.save |only plm-2.2-3/plm/tests/test_model.matrix_effects.Rout.save |only plm-2.2-3/plm/tests/test_model.matrix_pmodel.response.Rout.save |only plm-2.2-3/plm/tests/test_pbgtest.Rout.save |only plm-2.2-3/plm/tests/test_pcdtest.Rout.save |only plm-2.2-3/plm/tests/test_pdata.frame_const_allNA_nonfinite.Rout.save |only plm-2.2-3/plm/tests/test_pdata.frame_extract_class_est_mod.Rout.save |only plm-2.2-3/plm/tests/test_pdata.frame_print_duplicated_rownames.Rout.save |only plm-2.2-3/plm/tests/test_pdata.frame_unused_levels.Rout.save |only plm-2.2-3/plm/tests/test_pdiff_fd.Rout.save |only plm-2.2-3/plm/tests/test_pdwtest.Rout.save |only plm-2.2-3/plm/tests/test_pggls.Rout.save |only plm-2.2-3/plm/tests/test_plm.data.Rout.save |only plm-2.2-3/plm/tests/test_plm_na.action.Rout.save |only plm-2.2-3/plm/tests/test_preserve_rownames.Rout.save |only plm-2.2-3/plm/tests/test_pseries_subsetting.Rout.save |only plm-2.2-3/plm/tests/test_punbalancedness.Rout.save |only plm-2.2-3/plm/tests/test_pwfdtest_pwartest.Rout.save |only plm-2.2-3/plm/tests/test_pwtest.Rout.save |only plm-2.2-3/plm/tests/test_residuals_overall_fitted_exp.Rout.save |only plm-2.2-3/plm/tests/test_summary.plm_vcov.Rout.save |only plm-2.2-3/plm/tests/test_summary.pseries_character_logical_factor.Rout.save |only plm-2.2-3/plm/tests/test_vcovG_lin_dep.Rout.save |only plm-2.2-4/plm/DESCRIPTION | 21 plm-2.2-4/plm/MD5 | 200 plm-2.2-4/plm/NAMESPACE | 8 plm-2.2-4/plm/NEWS.md | 41 plm-2.2-4/plm/R/deprecated.R | 1456 plm-2.2-4/plm/R/detect_lin_dep_alias.R | 620 plm-2.2-4/plm/R/est_gmm.R | 67 plm-2.2-4/plm/R/est_pi.R | 53 plm-2.2-4/plm/R/est_plm.R | 1354 plm-2.2-4/plm/R/est_vcm.R | 690 plm-2.2-4/plm/R/experimental.R | 268 plm-2.2-4/plm/R/groupGenerics_pseries.R | 13 plm-2.2-4/plm/R/is.pconsecutive_pbalanced.R | 782 plm-2.2-4/plm/R/make.pconsecutive_pbalanced.R | 1397 plm-2.2-4/plm/R/plm-package.R | 20 plm-2.2-4/plm/R/test_cd.R | 1153 plm-2.2-4/plm/R/test_general.R | 238 plm-2.2-4/plm/R/test_uroot.R | 14 plm-2.2-4/plm/R/tool_misc.R | 1197 plm-2.2-4/plm/R/tool_model.extract.R | 677 plm-2.2-4/plm/R/tool_pdata.frame.R | 2 plm-2.2-4/plm/R/tool_ranfixef.R | 2 plm-2.2-4/plm/R/tool_transformations.R | 5 plm-2.2-4/plm/R/tool_vcovG.R | 6 plm-2.2-4/plm/build/partial.rdb |binary plm-2.2-4/plm/build/vignette.rds |binary plm-2.2-4/plm/data/Cigar.rda |binary plm-2.2-4/plm/data/Crime.rda |binary plm-2.2-4/plm/data/EmplUK.rda |binary plm-2.2-4/plm/data/Gasoline.rda |binary plm-2.2-4/plm/data/Grunfeld.rda |binary plm-2.2-4/plm/data/Hedonic.rda |binary plm-2.2-4/plm/data/LaborSupply.rda |binary plm-2.2-4/plm/data/Males.rda |binary plm-2.2-4/plm/data/Parity.rda |binary plm-2.2-4/plm/data/Produc.rda |binary plm-2.2-4/plm/data/RiceFarms.rda |binary plm-2.2-4/plm/data/Snmesp.rda |binary plm-2.2-4/plm/data/SumHes.rda |binary plm-2.2-4/plm/data/Wages.rda |binary plm-2.2-4/plm/inst/REFERENCES.bib | 32 plm-2.2-4/plm/inst/doc/plmFunction.html | 531 plm-2.2-4/plm/inst/doc/plmModelComponents.Rmd | 384 plm-2.2-4/plm/inst/doc/plmModelComponents.html | 405 plm-2.2-4/plm/inst/doc/plmPackage.html | 1017 plm-2.2-4/plm/man/Cigar.Rd | 8 plm-2.2-4/plm/man/Crime.Rd | 8 plm-2.2-4/plm/man/EmplUK.Rd | 6 plm-2.2-4/plm/man/Gasoline.Rd | 8 plm-2.2-4/plm/man/Grunfeld.Rd | 10 plm-2.2-4/plm/man/Hedonic.Rd | 8 plm-2.2-4/plm/man/LaborSupply.Rd | 8 plm-2.2-4/plm/man/Males.Rd | 6 plm-2.2-4/plm/man/Parity.Rd | 6 plm-2.2-4/plm/man/Produc.Rd | 8 plm-2.2-4/plm/man/RiceFarms.Rd | 6 plm-2.2-4/plm/man/Snmesp.Rd | 8 plm-2.2-4/plm/man/SumHes.Rd | 6 plm-2.2-4/plm/man/Wages.Rd | 8 plm-2.2-4/plm/man/aneweytest.Rd | 2 plm-2.2-4/plm/man/detect.lindep.Rd | 4 plm-2.2-4/plm/man/fixef.plm.Rd | 9 plm-2.2-4/plm/man/is.pconsecutive.Rd | 6 plm-2.2-4/plm/man/is.pseries.Rd | 2 plm-2.2-4/plm/man/mtest.Rd | 2 plm-2.2-4/plm/man/pdata.frame.Rd | 2 plm-2.2-4/plm/man/plm-deprecated.Rd | 6 plm-2.2-4/plm/man/purtest.Rd | 9 plm-2.2-4/plm/man/pvcm.Rd | 6 plm-2.2-4/plm/man/pwaldtest.Rd | 27 plm-2.2-4/plm/man/vcovNW.Rd | 3 plm-2.2-4/plm/man/vcovSCC.Rd | 3 plm-2.2-4/plm/tests/Examples/plm-Ex.Rout.save |27390 +++++----- plm-2.2-4/plm/tests/test_Estimators.Rout.save | 2966 - plm-2.2-4/plm/tests/test_FD_models.Rout.save | 342 plm-2.2-4/plm/tests/test_clubSandwich_interoperability.R | 172 plm-2.2-4/plm/tests/test_groupGenerics_pseries.R |only plm-2.2-4/plm/tests/test_groupGenerics_pseries.Rout.save |only plm-2.2-4/plm/tests/test_nested.Rout.save | 294 plm-2.2-4/plm/tests/test_pvar.R | 3 plm-2.2-4/plm/tests/test_pvar.Rout.save | 325 plm-2.2-4/plm/tests/test_pwaldtest.Rout.save | 1074 plm-2.2-4/plm/tests/test_pwaldtest_vcovG_attr_cluster.Rout.save | 784 plm-2.2-4/plm/tests/test_ranef.Rout.save | 828 plm-2.2-4/plm/vignettes/plmModelComponents.Rmd | 384 119 files changed, 24199 insertions(+), 23201 deletions(-)
Title: Miscellaneous Utilities and Functions
Description: Miscellaneous tools and functions,
including: generate descriptive statistics tables,
format output, visualize relations among variables or check
distributions, and generic functions for residual and
model diagnostics.
Author: Joshua F. Wiley [aut, cre] (<https://orcid.org/0000-0002-0271-6702>)
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between JWileymisc versions 1.1.1 dated 2020-04-28 and 1.2.0 dated 2020-08-31
DESCRIPTION | 12 +- MD5 | 65 +++++------ NAMESPACE | 10 + NEWS.md | 22 +++ R/descriptives.R | 41 ++++++- R/diagnostics.R | 135 ++++++++++++++++-------- R/models.R | 42 +------ R/plotting.R | 155 ++++++++++++++++++--------- R/utils.R | 2 build/vignette.rds |binary inst/doc/diagnostics-vignette.html | 34 ++++-- inst/doc/exploratory-vignette.R | 4 inst/doc/exploratory-vignette.Rmd | 11 + inst/doc/exploratory-vignette.html | 205 ++++++++++++++++++++----------------- inst/doc/model-test-vignette.html | 20 +++ man/SEMSummary.Rd | 11 + man/corplot.Rd | 26 +++- man/dot-quantilePercentiles.Rd | 7 + man/gglikert.Rd | 3 man/lm2.Rd | 3 man/meanCircular.Rd | 5 man/modelDiagnostics.Rd | 2 man/plot.SEMSummary.list.Rd | 5 man/plot.residualDiagnostics.Rd | 3 man/plot.testDistribution.Rd | 3 man/residualDiagnostics.Rd | 6 + man/testDistribution.Rd | 14 +- tests/testthat/test-compareIVs.R | 1 tests/testthat/test-descriptives.R | 41 +++++++ tests/testthat/test-lm2.R |only tests/testthat/test-modelTest.R | 6 - tests/testthat/test-styler.R | 33 +++++ tests/testthat/test-utils.R | 37 ++++++ vignettes/exploratory-vignette.Rmd | 11 + 34 files changed, 670 insertions(+), 305 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Joint analysis and imputation of incomplete data in the Bayesian
framework, using (generalized) linear (mixed) models and extensions there of,
survival models, or joint models for longitudinal and survival data.
Incomplete covariates, if present, are automatically imputed.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<http://mcmc-jags.sourceforge.net/> with the help of
the package 'rjags'.
Author: Nicole S. Erler [aut, cre] (<https://orcid.org/0000-0002-9370-6832>)
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 0.6.1 dated 2020-02-12 and 1.0.0 dated 2020-08-31
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Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating long memory-seasonal/cyclical Gegenbauer univariate time series processes. See for example (2018) <doi:10.1214/18-STS649>.
Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>
Diff between garma versions 0.9.2 dated 2020-08-06 and 0.9.3 dated 2020-08-31
DESCRIPTION | 7 +-- MD5 | 22 +++++----- R/css.R | 10 ---- R/gg_raw_pgram.R | 5 +- R/main.R | 85 +++++++++++++++++------------------------ R/semipara.R | 19 +++++++-- README.md | 12 ++--- inst/doc/introduction.Rmd | 2 inst/doc/introduction.pdf |binary inst/vignette_introduction.pdf |binary vignettes/introduction.Rmd | 2 vignettes/introduction.html | 2 12 files changed, 81 insertions(+), 85 deletions(-)
Title: Boltzmann Entropy of a Landscape Gradient
Description: Calculates the Boltzmann entropy of a landscape gradient.
This package uses the analytical method created by Gao, P., Zhang, H.
and Li, Z., 2018 (<doi:10.1111/tgis.12315>) and by Gao, P. and Li, Z., 2019
(<doi:10.1007/s10980-019-00854-3>). It also extend the original ideas by
allowing calculations on data with missing values.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between belg versions 1.4.0 dated 2020-07-19 and 1.4.1 dated 2020-08-31
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ README.md | 14 ++++++++++---- build/vignette.rds |binary inst/CITATION | 19 +++++++++++-------- inst/doc/belg1.html | 4 ++-- man/figures/README-unnamed-chunk-1-1.png |binary 7 files changed, 32 insertions(+), 23 deletions(-)
Title: Formats Spatial Data for Use in Htmlwidgets
Description: Many packages use 'htmlwidgets' <https://CRAN.R-project.org/package=htmlwidgets>
for interactive plotting of spatial data.
This package provides functions for converting R objects, such as simple features,
into structures suitable for use in 'htmlwidgets' mapping libraries.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between spatialwidget versions 0.2.2 dated 2020-03-21 and 0.2.3 dated 2020-08-31
DESCRIPTION | 15 ++++++----- MD5 | 24 +++++++++---------- NEWS.md | 5 +++ R/data.R | 4 +-- build/vignette.rds |binary inst/doc/spatialwidget.html | 16 ++++++++---- inst/include/spatialwidget/geojson/geojson.hpp | 2 - inst/include/spatialwidget/parameters/parameters.hpp | 3 -- inst/include/spatialwidget/spatialwidget.hpp | 2 - man/widget_arcs.Rd | 6 +++- man/widget_capitals.Rd | 6 +++- man/widget_melbourne.Rd | 8 +++--- man/widget_roads.Rd | 6 +++- 13 files changed, 56 insertions(+), 41 deletions(-)
Title: Modelling and Quantitative Methods in Fisheries
Description: Complements the book "Using R for Modelling and
Quantitative Methods in Fisheries" ISBN: 9780367469894, being
published in September 2020 by Chapman & Hall in their "Using R series".
There are numerous functions and data-sets that are used in the
book's many practical examples.
Author: Malcolm Haddon [aut, cre]
Maintainer: Malcolm Haddon <malcolm.haddon@gmail.com>
Diff between MQMF versions 0.1.0 dated 2020-03-19 and 0.1.1 dated 2020-08-31
DESCRIPTION | 19 - MD5 | 204 +++++++++---------- NAMESPACE | 3 NEWS.md |only R/MQMF.r | 37 +-- R/ch_chunks.R | 513 +++++++++++++++++++++++++----------------------- R/datasets.r | 54 ++--- R/fisheries.r | 87 ++++---- R/mcmc.R | 34 +-- R/mqmf_utils.r | 151 +++++++------- R/plotfuns.R | 109 +++++----- R/spm.r | 126 ++++++----- README.md | 24 +- inst |only man/Gz.Rd | 2 man/LatA.Rd | 6 man/MQMF.Rd | 35 +-- man/abdat.Rd | 8 man/addcontours.Rd | 6 man/addlnorm.Rd | 2 man/aicbic.Rd | 8 man/bce.Rd | 5 man/bh.Rd | 2 man/blackisland.Rd | 14 - man/bracket.Rd | 2 man/calcprior.Rd | 7 man/chapter2.Rd | 35 +-- man/chapter3.Rd | 60 +++-- man/chapter4.Rd | 106 +++++---- man/chapter5.Rd | 49 ++-- man/chapter6.Rd | 112 +++++----- man/chapter7.Rd | 151 +++++++------- man/countNAs.Rd | 3 man/countgtone.Rd | 5 man/countgtzero.Rd | 9 man/countones.Rd | 3 man/countzeros.Rd | 3 man/dataspm.Rd | 25 +- man/discretelogistic.Rd | 13 - man/do_MCMC.Rd | 27 +- man/domed.Rd | 5 man/fabens.Rd | 2 man/facttonum.Rd | 4 man/fitSPM.Rd | 10 man/getMSY.Rd | 6 man/getlag.Rd | 2 man/getmax.Rd | 2 man/getmin.Rd | 7 man/getrmse.Rd | 15 - man/getseed.Rd | 4 man/getsingle.Rd | 6 man/gettime.Rd | 4 man/getvector.Rd | 12 - man/halftable.Rd | 6 man/inthist.Rd | 10 man/invl.Rd | 4 man/iscol.Rd | 6 man/likeratio.Rd | 2 man/logist.Rd | 2 man/magnitude.Rd | 2 man/makelabel.Rd | 1 man/minnow.Rd | 10 man/mm.Rd | 2 man/mnnegLL.Rd | 2 man/negLL.Rd | 4 man/negLL1.Rd | 6 man/negLLM.Rd | 11 - man/negLLP.Rd | 5 man/negNLL.Rd | 4 man/negnormL.Rd | 3 man/npf.Rd | 10 man/outfit.Rd | 2 man/panel.cor.Rd | 2 man/parasympt.Rd | 5 man/parset.Rd | 15 - man/penalty1.Rd | 2 man/plot.dynpop.Rd | 4 man/plot1.Rd | 12 - man/plotlag.Rd | 2 man/plotprep.Rd | 15 - man/plotprofile.Rd | 2 man/plotproj.Rd | 4 man/predfreq.Rd | 4 man/properties.Rd | 19 - man/pttuna.Rd | 15 - man/quants.Rd | 3 man/removeEmpty.Rd | 8 man/ricker.Rd | 4 man/robustSPM.Rd | 8 man/schaef.Rd | 6 man/setpalette.Rd | 21 + man/simpspm.Rd | 12 - man/simpspmM.Rd | 7 man/spm.Rd | 10 man/spmCE.Rd | 27 +- man/spmboot.Rd | 14 - man/spmproj.Rd | 2 man/spmprojDet.Rd | 2 man/srug.Rd | 7 man/tasab.Rd | 6 man/tigers.Rd | 8 man/twoindex.Rd | 12 - man/uphist.Rd | 4 man/which.closest.Rd | 8 104 files changed, 1336 insertions(+), 1164 deletions(-)
Title: Tools for Matrix Algebra, Optimization and Inference
Description: Matrix is an universal and sometimes primary object/unit in applied mathematics and statistics. We provide a number of algorithms for selected problems in optimization and statistical inference. For general exposition to the topic with focus on statistical context, see the book by Banerjee and Roy (2014, ISBN:9781420095388).
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between maotai versions 0.1.6 dated 2020-05-17 and 0.1.7 dated 2020-08-31
maotai-0.1.6/maotai/man/hidden_geigen.Rd |only maotai-0.1.7/maotai/DESCRIPTION | 14 +++++----- maotai-0.1.7/maotai/MD5 | 26 ++++++++++++------- maotai-0.1.7/maotai/NAMESPACE | 3 ++ maotai-0.1.7/maotai/NEWS.md | 8 ++++- maotai-0.1.7/maotai/R/aux_hiddenDAS.R | 42 +++++++++++++++++++++++++++++++ maotai-0.1.7/maotai/R/aux_hiddenR.R | 8 +++++ maotai-0.1.7/maotai/R/later_findmed.R |only maotai-0.1.7/maotai/R/later_matrix1F1.R |only maotai-0.1.7/maotai/R/later_matrix2F1.R |only maotai-0.1.7/maotai/R/later_mbeta.R |only maotai-0.1.7/maotai/R/later_mgamma.R |only maotai-0.1.7/maotai/R/later_scalar0F1.R |only maotai-0.1.7/maotai/R/later_scalar1F1.R |only maotai-0.1.7/maotai/R/later_scalar2F1.R |only maotai-0.1.7/maotai/R/later_scalarpFq.R |only maotai-0.1.7/maotai/R/package-maotai.R | 4 ++ maotai-0.1.7/maotai/build/partial.rdb |binary maotai-0.1.7/maotai/inst/REFERENCES.bib | 20 +++++++++++--- 19 files changed, 102 insertions(+), 23 deletions(-)
Title: Exploratory Chemometrics for 2D Spectroscopy
Description: A collection of functions for exploratory chemometrics of 2D spectroscopic data sets such as COSY (correlated spectroscopy) and HSQC (heteronuclear single quantum coherence) 2D NMR (nuclear magnetic resonance) spectra. 'ChemoSpec2D' deploys methods aimed primarily at classification of samples and the identification of spectral features which are important in distinguishing samples from each other. Each 2D spectrum (a matrix) is treated as the unit of observation, and thus the physical sample in the spectrometer corresponds to the sample from a statistical perspective. In addition to chemometric tools, a few tools are provided for plotting 2D spectra, but these are not intended to replace the functionality typically available on the spectrometer. 'ChemoSpec2D' takes many of its cues from 'ChemoSpec' and tries to create consistent graphical output and to be very user friendly.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec2D versions 0.4.147 dated 2020-02-19 and 0.4.176 dated 2020-08-31
ChemoSpec2D-0.4.147/ChemoSpec2D/inst/doc/ChemoSpec2D.pdf |only ChemoSpec2D-0.4.147/ChemoSpec2D/vignettes/3Darray.pdf |only ChemoSpec2D-0.4.176/ChemoSpec2D/DESCRIPTION | 12 - ChemoSpec2D-0.4.176/ChemoSpec2D/MD5 | 31 +- ChemoSpec2D-0.4.176/ChemoSpec2D/NEWS.md | 9 ChemoSpec2D-0.4.176/ChemoSpec2D/R/AlignArraysMBO.R | 6 ChemoSpec2D-0.4.176/ChemoSpec2D/R/files2Spectra2DObject.R | 2 ChemoSpec2D-0.4.176/ChemoSpec2D/R/hats_alignSpectra2D.R | 5 ChemoSpec2D-0.4.176/ChemoSpec2D/build/vignette.rds |binary ChemoSpec2D-0.4.176/ChemoSpec2D/data/MUD1.RData |binary ChemoSpec2D-0.4.176/ChemoSpec2D/data/MUD2.RData |binary ChemoSpec2D-0.4.176/ChemoSpec2D/inst/doc/ChemoSpec2D.R | 6 ChemoSpec2D-0.4.176/ChemoSpec2D/inst/doc/ChemoSpec2D.Rmd | 149 +++----------- ChemoSpec2D-0.4.176/ChemoSpec2D/inst/doc/ChemoSpec2D.html |only ChemoSpec2D-0.4.176/ChemoSpec2D/man/MUD.Rd | 4 ChemoSpec2D-0.4.176/ChemoSpec2D/man/figures |only ChemoSpec2D-0.4.176/ChemoSpec2D/vignettes/3Darray.png |only ChemoSpec2D-0.4.176/ChemoSpec2D/vignettes/ChemoSpec2D.Rmd | 149 +++----------- ChemoSpec2D-0.4.176/ChemoSpec2D/vignettes/ChemoSpec2D.bib | 6 19 files changed, 121 insertions(+), 258 deletions(-)
Title: Taking the Pain Out of Catching and Handling Conditions
Description: R has a unique way of dealing with warnings, errors, messages,
and other conditions, but it can often be troublesome to users coming
from different programming backgrounds. The purpose of this package is
to provide flexible and useful tools for handling R conditions with
less hassle. In order to lower the barrier of entry, keep code clean
and readable, and reduce the amount of typing required, `catchr` uses
a very simple domain-specific language that simplifies things on the
front-end.
This package aims to maintain a continuous learning curve that lets new
users jump straight in to condition-handling, while simultaneously
offering depth and complexity for more advanced users.
Author: Zachary Burchill [aut, cre, cph]
Maintainer: Zachary Burchill <zach.burchill.code@gmail.com>
Diff between catchr versions 0.2.2 dated 2020-01-09 and 0.2.3 dated 2020-08-31
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 9 ++++++++- R/catching-n-plans.R | 8 ++------ R/check-n-clean.R | 2 +- inst/doc/welcome-to-catchr.R | 34 +++++++++++++++++----------------- inst/doc/welcome-to-catchr.html | 4 ++-- tests/testthat/test-testing.R | 29 +++++++++++++++++++++++++++-- 8 files changed, 67 insertions(+), 39 deletions(-)