Title: Miscellaneous Tools for Chinese Text Mining and More
Description: Efforts are made to make Chinese text mining easier, faster, and robust to errors.
Document term matrix can be generated by only one line of code; detecting encoding,
segmenting and removing stop words are done automatically.
Some convenient tools are also supplied.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between chinese.misc versions 0.2.2 dated 2020-05-09 and 0.2.3 dated 2020-09-11
chinese.misc-0.2.2/chinese.misc/R/CQUOTE.R |only chinese.misc-0.2.2/chinese.misc/R/UsEstrIngI.R |only chinese.misc-0.2.2/chinese.misc/R/tryscAn.R |only chinese.misc-0.2.2/chinese.misc/man/CQUOTE.Rd |only chinese.misc-0.2.3/chinese.misc/DESCRIPTION | 10 +++++----- chinese.misc-0.2.3/chinese.misc/MD5 | 18 +++++++----------- chinese.misc-0.2.3/chinese.misc/NAMESPACE | 1 - chinese.misc-0.2.3/chinese.misc/R/gEtthEEnc.R | 6 ------ chinese.misc-0.2.3/chinese.misc/R/make_stoplist.R | 3 ++- chinese.misc-0.2.3/chinese.misc/R/scancn.R | 9 +++------ chinese.misc-0.2.3/chinese.misc/R/zzz.r | 18 +++++++++--------- chinese.misc-0.2.3/chinese.misc/man/scancn.Rd | 5 +---- 12 files changed, 27 insertions(+), 43 deletions(-)
Title: Tools to Match Financial Portfolios with Climate Data
Description: These tools implement in R a fundamental part of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
portfolios and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. This package matches data from
financial portfolios to asset level data from market-intelligence
databases (e.g. power plant capacities, emission factors, etc.). This
is the first step to assess if a financial portfolio aligns with
climate goals.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.match versions 0.0.4 dated 2020-08-13 and 0.0.5 dated 2020-09-11
DESCRIPTION | 8 +-- LICENSE |only MD5 | 13 +++--- NEWS.md | 8 +++ README.md | 81 +++++++++++++++++++++++++++++---------- inst/WORDLIST | 8 +++ man/prioritize.Rd | 11 +++-- tests/testthat/test-match_name.R | 8 --- 8 files changed, 97 insertions(+), 40 deletions(-)
Title: Testing Infrastructure for Broom Model Generics
Description: Provides a number of testthat tests that can be
used to verify that tidy(), glance() and augment() methods meet
consistent specifications. This allows methods for the same generic to
be spread across multiple packages, since all of those packages can
make the same guarantees to users about returned objects.
Author: Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between modeltests versions 0.1.2 dated 2020-06-03 and 0.1.3 dated 2020-09-11
DESCRIPTION | 8 LICENSE | 4 MD5 | 104 +++--- NAMESPACE | 34 +- NEWS.md | 29 + R/augment_data_helper.R | 86 ++--- R/check_arguments.R | 204 ++++++------ R/check_augment_data_specification.R | 198 ++++++------ R/check_augment_function.R | 222 ++++++------- R/check_augment_newdata_precedence.R | 82 ++--- R/check_augment_no_data.R | 102 +++--- R/check_dims.R | 44 +- R/check_glance_outputs.R | 80 ++-- R/check_single_augment_output.R | 108 +++--- R/check_tibble.R | 102 +++--- R/check_tidy_output.R | 26 - R/data-argument-glossary.R | 22 - R/data-column-glossary.R | 22 - R/modeltests-package.R | 34 +- R/utils.R | 126 +++---- README.md | 30 - data/argument_glossary.rda |binary data/column_glossary.rda |binary man/acceptable_augment_colnames.Rd | 52 +-- man/argument_glossary.Rd | 48 +- man/augment_data_helper.Rd | 70 ++-- man/check_arguments.Rd | 78 ++-- man/check_augment_data_specification.Rd | 106 +++--- man/check_augment_function.Rd | 102 +++--- man/check_augment_newdata_precedence.Rd | 50 +-- man/check_augment_no_data.Rd | 90 ++--- man/check_dims.Rd | 46 +- man/check_glance_outputs.Rd | 70 ++-- man/check_single_augment_output.Rd | 74 ++-- man/check_tibble.Rd | 86 ++--- man/check_tidy_output.Rd | 46 +- man/column_glossary.Rd | 48 +- man/has_rownames.Rd | 40 +- man/modeltests-package.Rd | 59 +-- tests/testthat.R | 8 tests/testthat/test-augment_data_helper.R | 150 ++++----- tests/testthat/test-check_arguments.R | 186 +++++------ tests/testthat/test-check_augment_data_specification.R | 276 ++++++++--------- tests/testthat/test-check_augment_function.R | 142 ++++---- tests/testthat/test-check_augment_newdata_precedence.R | 64 +-- tests/testthat/test-check_augment_no_data.R | 120 +++---- tests/testthat/test-check_augment_resid_presence.R | 16 tests/testthat/test-check_augment_se_fit.R | 24 - tests/testthat/test-check_dims.R | 22 - tests/testthat/test-check_glance_outputs.R | 84 ++--- tests/testthat/test-check_single_augment_output.R | 102 +++--- tests/testthat/test-check_tibble.R | 72 ++-- tests/testthat/test-utils.R | 42 +- 53 files changed, 2025 insertions(+), 2015 deletions(-)
Title: Detection of Low-Quality Peaks in Untargeted Metabolomics Data
Description: Utilizes 11 peak quality metrics and 8 diverse machine learning algorithms to build a classifier for the automatic
assessment of peak integration quality of peaks from untargeted metabolomics analyses.
The 12 peak quality metrics were adapted from those defined in the following references:
Zhang, W., & Zhao, P.X. (2014) <doi:10.1186/1471-2105-15-S11-S5>
Toghi Eshghi, S., Auger, P., & Mathews, W.R. (2018) <doi:10.1186/s12014-018-9209-x>.
Author: Kelsey Chetnik
Maintainer: Kelsey Chetnik <kchetnik73@gmail.com>
Diff between MetaClean versions 0.1.0 dated 2020-06-14 and 1.0.0 dated 2020-09-11
MetaClean-0.1.0/MetaClean/R/calculatePeakSignificanceLevel.R |only MetaClean-0.1.0/MetaClean/R/makeBarPlots.R |only MetaClean-0.1.0/MetaClean/R/trainClassifiers.R |only MetaClean-0.1.0/MetaClean/data/pqMetrics_development.rda |only MetaClean-0.1.0/MetaClean/data/pqMetrics_test.rda |only MetaClean-0.1.0/MetaClean/man/calculatePeakSignificanceLevel.Rd |only MetaClean-0.1.0/MetaClean/man/makeBarPlots.Rd |only MetaClean-0.1.0/MetaClean/man/pqMetrics_development.Rd |only MetaClean-0.1.0/MetaClean/man/pqMetrics_test.Rd |only MetaClean-0.1.0/MetaClean/man/trainClassifiers.Rd |only MetaClean-1.0.0/MetaClean/DESCRIPTION | 17 MetaClean-1.0.0/MetaClean/MD5 | 74 MetaClean-1.0.0/MetaClean/NAMESPACE | 9 MetaClean-1.0.0/MetaClean/R/calculateApexMaxBoundary.R | 12 MetaClean-1.0.0/MetaClean/R/calculateElutionShift.R | 36 MetaClean-1.0.0/MetaClean/R/calculateEvaluationMeasures.R | 104 - MetaClean-1.0.0/MetaClean/R/calculateFWHM.R | 61 MetaClean-1.0.0/MetaClean/R/calculateGaussianSimilarity.R | 3 MetaClean-1.0.0/MetaClean/R/calculateJaggedness.R | 20 MetaClean-1.0.0/MetaClean/R/calculateModality.R | 44 MetaClean-1.0.0/MetaClean/R/calculateRetentionTimeConsistency.R | 18 MetaClean-1.0.0/MetaClean/R/calculateSharpness.R | 33 MetaClean-1.0.0/MetaClean/R/calculateSymmetry.R | 15 MetaClean-1.0.0/MetaClean/R/calculateTPASR.R | 58 MetaClean-1.0.0/MetaClean/R/calculateZigZagIndex.R | 22 MetaClean-1.0.0/MetaClean/R/data.R | 16 MetaClean-1.0.0/MetaClean/R/getBarPlots.R |only MetaClean-1.0.0/MetaClean/R/getEvalObj.R | 105 - MetaClean-1.0.0/MetaClean/R/getEvaluationMeasures.R | 88 MetaClean-1.0.0/MetaClean/R/getPeakQualityMetrics.R | 201 +- MetaClean-1.0.0/MetaClean/R/getPredictions.R |only MetaClean-1.0.0/MetaClean/R/rsdFilter.R |only MetaClean-1.0.0/MetaClean/R/runCrossValidation.R |only MetaClean-1.0.0/MetaClean/R/summaryStats.R | 78 MetaClean-1.0.0/MetaClean/R/trainClassifier.R |only MetaClean-1.0.0/MetaClean/build/vignette.rds |binary MetaClean-1.0.0/MetaClean/data/pqm_development.rda |only MetaClean-1.0.0/MetaClean/data/pqm_test.rda |only MetaClean-1.0.0/MetaClean/inst/doc/MetaClean_WalkThrough.R | 306 +-- MetaClean-1.0.0/MetaClean/inst/doc/MetaClean_WalkThrough.Rmd | 642 +++--- MetaClean-1.0.0/MetaClean/inst/doc/MetaClean_WalkThrough.html | 985 +++++----- MetaClean-1.0.0/MetaClean/man/getBarPlots.Rd |only MetaClean-1.0.0/MetaClean/man/getEvaluationMeasures.Rd | 4 MetaClean-1.0.0/MetaClean/man/getPredicitons.Rd |only MetaClean-1.0.0/MetaClean/man/pqm_development.Rd |only MetaClean-1.0.0/MetaClean/man/pqm_test.Rd |only MetaClean-1.0.0/MetaClean/man/rsdFilter.Rd |only MetaClean-1.0.0/MetaClean/man/runCrossValidation.Rd |only MetaClean-1.0.0/MetaClean/man/trainClassifier.Rd |only MetaClean-1.0.0/MetaClean/vignettes/MetaClean_WalkThrough.Rmd | 642 +++--- 50 files changed, 1896 insertions(+), 1697 deletions(-)
Title: Acoustic Telemetry Data Analysis
Description: Designed for studies where animals tagged with acoustic tags are expected
to move through receiver arrays. This package combines the advantages of automatic sorting and checking
of animal movements with the possibility for user intervention on tags that deviate from expected
behaviour. The three analysis functions (explore(), migration() and residency())
allow the users to analyse their data in a systematic way, making it easy to compare results from
different studies.
CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.
Author: Hugo Flávio [aut, cre] (<https://orcid.org/0000-0002-5174-1197>)
Maintainer: Hugo Flávio <hdmfla@aqua.dtu.dk>
Diff between actel versions 1.1.0 dated 2020-08-01 and 1.1.1 dated 2020-09-11
actel-1.1.0/actel/man/dailyPositions.Rd |only actel-1.1.0/actel/man/dailyRatios.Rd |only actel-1.1.0/actel/man/dailyRatiosIndOut.Rd |only actel-1.1.0/actel/tests/testthat/aux_dailyRatios.RData |only actel-1.1.1/actel/DESCRIPTION | 10 actel-1.1.1/actel/MD5 | 345 ++-- actel-1.1.1/actel/NAMESPACE | 5 actel-1.1.1/actel/NEWS.md | 48 actel-1.1.1/actel/R/CJS.R | 80 actel-1.1.1/actel/R/actel.R | 16 actel-1.1.1/actel/R/check.R | 243 +- actel-1.1.1/actel/R/explore.R | 100 - actel-1.1.1/actel/R/get.R | 34 actel-1.1.1/actel/R/helper.R | 52 actel-1.1.1/actel/R/load.R | 158 + actel-1.1.1/actel/R/migration.R | 208 +- actel-1.1.1/actel/R/movements.R | 71 actel-1.1.1/actel/R/plot.R | 821 +++++++++- actel-1.1.1/actel/R/preload.R | 15 actel-1.1.1/actel/R/print.R | 358 ++-- actel-1.1.1/actel/R/residency.R | 454 +++-- actel-1.1.1/actel/R/sysdata.rda |binary actel-1.1.1/actel/R/z_examples.R | 19 actel-1.1.1/actel/README.md | 22 actel-1.1.1/actel/data/additional.residency.results.rda |only actel-1.1.1/actel/data/example.results.rda |binary actel-1.1.1/actel/inst/doc/a-0_workspace_requirements.Rmd | 36 actel-1.1.1/actel/inst/doc/a-0_workspace_requirements.html | 36 actel-1.1.1/actel/inst/doc/a-1_study_area.Rmd | 28 actel-1.1.1/actel/inst/doc/a-1_study_area.html | 32 actel-1.1.1/actel/inst/doc/a-2_distances_matrix.Rmd | 6 actel-1.1.1/actel/inst/doc/a-2_distances_matrix.html | 10 actel-1.1.1/actel/inst/doc/a-3_preload.html | 4 actel-1.1.1/actel/inst/doc/b-0_explore.Rmd | 54 actel-1.1.1/actel/inst/doc/b-0_explore.html | 82 actel-1.1.1/actel/inst/doc/b-1_explore_processes.Rmd | 62 actel-1.1.1/actel/inst/doc/b-1_explore_processes.html | 80 actel-1.1.1/actel/inst/doc/b-2_explore_results.Rmd | 34 actel-1.1.1/actel/inst/doc/b-2_explore_results.html | 52 actel-1.1.1/actel/inst/doc/c-0_migration.Rmd | 14 actel-1.1.1/actel/inst/doc/c-0_migration.html | 18 actel-1.1.1/actel/inst/doc/c-1_migration_processes.Rmd | 26 actel-1.1.1/actel/inst/doc/c-1_migration_processes.html | 30 actel-1.1.1/actel/inst/doc/c-2_migration_results.Rmd | 29 actel-1.1.1/actel/inst/doc/c-2_migration_results.html | 38 actel-1.1.1/actel/inst/doc/c-3_migration_efficiency.Rmd | 20 actel-1.1.1/actel/inst/doc/c-3_migration_efficiency.html | 24 actel-1.1.1/actel/inst/doc/d-0_residency.Rmd | 17 actel-1.1.1/actel/inst/doc/d-0_residency.html | 23 actel-1.1.1/actel/inst/doc/d-1_residency_processes.Rmd | 20 actel-1.1.1/actel/inst/doc/d-1_residency_processes.html | 26 actel-1.1.1/actel/inst/doc/d-2_residency_results.Rmd | 37 actel-1.1.1/actel/inst/doc/d-2_residency_results.html | 46 actel-1.1.1/actel/inst/doc/d-3_residency_efficiency.Rmd | 26 actel-1.1.1/actel/inst/doc/d-3_residency_efficiency.html | 30 actel-1.1.1/actel/inst/doc/e-0_manual_mode.Rmd | 8 actel-1.1.1/actel/inst/doc/e-0_manual_mode.html | 14 actel-1.1.1/actel/inst/doc/f-0_post_functions.Rmd | 184 +- actel-1.1.1/actel/inst/doc/f-0_post_functions.html | 258 ++- actel-1.1.1/actel/man/actel.Rd | 16 actel-1.1.1/actel/man/additional.residency.results.Rd |only actel-1.1.1/actel/man/appendTo.Rd | 4 actel-1.1.1/actel/man/assembleOutput.Rd | 4 actel-1.1.1/actel/man/assembleSectionOverview.Rd | 4 actel-1.1.1/actel/man/assembleTimetable.Rd | 10 actel-1.1.1/actel/man/blameArrays.Rd | 4 actel-1.1.1/actel/man/checkArguments.Rd | 23 actel-1.1.1/actel/man/checkDetectionsBeforeRelease.Rd | 2 actel-1.1.1/actel/man/checkDupSignals.Rd | 2 actel-1.1.1/actel/man/checkImpassables.Rd | 8 actel-1.1.1/actel/man/checkInactiveness.Rd | 12 actel-1.1.1/actel/man/checkJumpDistance.Rd | 14 actel-1.1.1/actel/man/checkLinearity.Rd | 8 actel-1.1.1/actel/man/checkMinimumN.Rd | 8 actel-1.1.1/actel/man/checkNoDetections.Rd | 2 actel-1.1.1/actel/man/checkSMovesN.Rd | 6 actel-1.1.1/actel/man/checkSpeeds.Rd | 12 actel-1.1.1/actel/man/checkTagsInUnknownReceivers.Rd | 2 actel-1.1.1/actel/man/checkUpstream.Rd | 8 actel-1.1.1/actel/man/check_args.Rd | 6 actel-1.1.1/actel/man/countArrayFailures.Rd | 4 actel-1.1.1/actel/man/darken.Rd |only actel-1.1.1/actel/man/dualMatrix.Rd | 2 actel-1.1.1/actel/man/efficiencyMatrix.Rd | 2 actel-1.1.1/actel/man/example.detections.Rd | 2 actel-1.1.1/actel/man/example.results.Rd | 2 actel-1.1.1/actel/man/explore.Rd | 24 actel-1.1.1/actel/man/findSecondsPerSection.Rd | 10 actel-1.1.1/actel/man/firstArrayFailure.Rd | 6 actel-1.1.1/actel/man/getResidency.Rd | 6 actel-1.1.1/actel/man/getSpeeds.Rd | 12 actel-1.1.1/actel/man/getTimes.Rd | 4 actel-1.1.1/actel/man/globalRatios.Rd | 12 actel-1.1.1/actel/man/graphicalInvalidate.Rd | 6 actel-1.1.1/actel/man/groupMovements.Rd | 6 actel-1.1.1/actel/man/includeMissing.Rd | 6 actel-1.1.1/actel/man/invalidateEvents.Rd | 6 actel-1.1.1/actel/man/loadStudyData.Rd | 4 actel-1.1.1/actel/man/match.POSIXt.Rd |only actel-1.1.1/actel/man/migration.Rd | 64 actel-1.1.1/actel/man/movementSpeeds.Rd | 2 actel-1.1.1/actel/man/movementTimes.Rd | 2 actel-1.1.1/actel/man/oneWayMoves.Rd | 2 actel-1.1.1/actel/man/overrideValidityChecks.Rd | 10 actel-1.1.1/actel/man/plotArray.Rd |only actel-1.1.1/actel/man/plotDetections.Rd |only actel-1.1.1/actel/man/plotMoves.Rd | 16 actel-1.1.1/actel/man/plotRatios.Rd |only actel-1.1.1/actel/man/plotResidency.Rd |only actel-1.1.1/actel/man/plotSensors.Rd |only actel-1.1.1/actel/man/plotTimes.Rd | 4 actel-1.1.1/actel/man/preload.Rd | 2 actel-1.1.1/actel/man/printBiometrics.Rd | 4 actel-1.1.1/actel/man/printCircular.Rd | 2 actel-1.1.1/actel/man/printGlobalRatios.Rd | 8 actel-1.1.1/actel/man/printIndividualResidency.Rd | 4 actel-1.1.1/actel/man/printIndividuals.Rd | 2 actel-1.1.1/actel/man/printLastArray.Rd | 4 actel-1.1.1/actel/man/printLastSection.Rd | 4 actel-1.1.1/actel/man/printMigrationRmd.Rd | 2 actel-1.1.1/actel/man/printSectionTimes.Rd | 2 actel-1.1.1/actel/man/printSensorData.Rd | 8 actel-1.1.1/actel/man/printSurvivalGraphic.Rd | 4 actel-1.1.1/actel/man/resPositions.Rd |only actel-1.1.1/actel/man/resRatios.Rd |only actel-1.1.1/actel/man/resRatiosIndOut.Rd |only actel-1.1.1/actel/man/res_assembleOutput.Rd | 4 actel-1.1.1/actel/man/res_efficiency.Rd | 10 actel-1.1.1/actel/man/residency.Rd | 66 actel-1.1.1/actel/man/roseMean.Rd | 7 actel-1.1.1/actel/man/sectionMovements.Rd | 2 actel-1.1.1/actel/man/simplifyMovements.Rd | 6 actel-1.1.1/actel/man/speedReleaseToFirst.Rd | 6 actel-1.1.1/actel/man/splitDetections.Rd | 2 actel-1.1.1/actel/man/tableInteraction.Rd | 4 actel-1.1.1/actel/man/transferValidity.Rd | 2 actel-1.1.1/actel/man/transformSpatial.Rd | 2 actel-1.1.1/actel/man/updateValidity.Rd | 2 actel-1.1.1/actel/man/validateDetections.Rd | 4 actel-1.1.1/actel/tests/testthat/aux_globalRatios_day.RData |only actel-1.1.1/actel/tests/testthat/aux_globalRatios_hour.RData |only actel-1.1.1/actel/tests/testthat/aux_includeIntraArrayEstimates.RData |binary actel-1.1.1/actel/tests/testthat/aux_resRatios_day.RData |only actel-1.1.1/actel/tests/testthat/aux_resRatios_hour.RData |only actel-1.1.1/actel/tests/testthat/aux_res_efficiency.RData |binary actel-1.1.1/actel/tests/testthat/test_CJS_functions.R | 16 actel-1.1.1/actel/tests/testthat/test_CJS_functions_2_releases.R | 22 actel-1.1.1/actel/tests/testthat/test_array_movement_checks.R | 72 actel-1.1.1/actel/tests/testthat/test_distancesMatrix_functions.R | 15 actel-1.1.1/actel/tests/testthat/test_explore.R | 6 actel-1.1.1/actel/tests/testthat/test_getSpeeds.R | 62 actel-1.1.1/actel/tests/testthat/test_groupMovements.R | 18 actel-1.1.1/actel/tests/testthat/test_helpers.R | 7 actel-1.1.1/actel/tests/testthat/test_loadBio.R | 18 actel-1.1.1/actel/tests/testthat/test_loadDetections.R | 8 actel-1.1.1/actel/tests/testthat/test_loadStudyData.R | 2 actel-1.1.1/actel/tests/testthat/test_migration_helpers.R | 28 actel-1.1.1/actel/tests/testthat/test_plotArray.R |only actel-1.1.1/actel/tests/testthat/test_plotDetections.R |only actel-1.1.1/actel/tests/testthat/test_plotMoves.R | 47 actel-1.1.1/actel/tests/testthat/test_plotRatios.R |only actel-1.1.1/actel/tests/testthat/test_plotResidency.R |only actel-1.1.1/actel/tests/testthat/test_plotSensors.R |only actel-1.1.1/actel/tests/testthat/test_preload.R | 49 actel-1.1.1/actel/tests/testthat/test_print_extremes.R | 59 actel-1.1.1/actel/tests/testthat/test_residency.R | 25 actel-1.1.1/actel/tests/testthat/test_residency_helpers.R | 73 actel-1.1.1/actel/tests/testthat/test_sectionMovements.R | 24 actel-1.1.1/actel/tests/testthat/test_splitDetections.R | 14 actel-1.1.1/actel/tests/testthat/test_transformSpatial.R | 10 actel-1.1.1/actel/vignettes/a-0_workspace_requirements.Rmd | 36 actel-1.1.1/actel/vignettes/a-1_study_area.Rmd | 28 actel-1.1.1/actel/vignettes/a-2_distances_matrix.Rmd | 6 actel-1.1.1/actel/vignettes/b-0_explore.Rmd | 54 actel-1.1.1/actel/vignettes/b-1_explore_processes.Rmd | 62 actel-1.1.1/actel/vignettes/b-2_explore_results.Rmd | 34 actel-1.1.1/actel/vignettes/c-0_migration.Rmd | 14 actel-1.1.1/actel/vignettes/c-1_migration_processes.Rmd | 26 actel-1.1.1/actel/vignettes/c-2_migration_results.Rmd | 29 actel-1.1.1/actel/vignettes/c-3_migration_efficiency.Rmd | 20 actel-1.1.1/actel/vignettes/d-0_residency.Rmd | 17 actel-1.1.1/actel/vignettes/d-1_residency_processes.Rmd | 20 actel-1.1.1/actel/vignettes/d-2_residency_results.Rmd | 37 actel-1.1.1/actel/vignettes/d-3_residency_efficiency.Rmd | 26 actel-1.1.1/actel/vignettes/e-0_manual_mode.Rmd | 8 actel-1.1.1/actel/vignettes/f-0_post_functions.Rmd | 184 +- 186 files changed, 3909 insertions(+), 2262 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
Diff between MatTransMix versions 0.1.11 dated 2020-08-26 and 0.1.12 dated 2020-09-11
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS | 4 ++++ demo/EMdemoCrime1.R | 19 +++++++++++++++++-- demo/EMdemoCrime2.R | 12 ++++++++++-- demo/EMdemoCrime3.R | 10 +++++++++- demo/EMdemoCrime4.R | 21 +++++++++++++++++++-- demo/EMdemoIMDb1.R | 14 ++++++++++++-- demo/EMdemoIMDb2.R | 16 ++++++++++++---- demo/EMdemoIMDb3.R | 15 ++++++++++++--- demo/EMdemoIris.R | 10 +++++++--- demo/Initdemo.R | 4 +++- 12 files changed, 120 insertions(+), 35 deletions(-)
Title: Short Sprints
Description: Create short sprint (<6sec) profiles using the split times or the radar gun data.
Mono-exponential equation is used to estimate maximal sprinting speed (MSS), relative acceleration (TAU),
and other parameters such us maximal acceleration (MAC) and maximal relative power (PMAX). These parameters
can be used to predict kinematic and kinetics variables and to compare individuals. The modeling method utilized
in this package is based on the works of Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>, and
Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>.
Author: Mladen Jovanovic [aut, cre],
Jason D. Vescovi [dtc]
Maintainer: Mladen Jovanovic <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 1.1.0 dated 2020-07-28 and 1.1.1 dated 2020-09-11
DESCRIPTION | 17 +++++++++----- MD5 | 35 ++++++++++++++++-------------- NEWS.md | 7 ++++++ R/vescovi.R |only data/vescovi.rda |only inst/CITATION | 4 +-- inst/doc/sprint-corrections.R | 2 - inst/doc/sprint-corrections.Rmd | 2 - inst/doc/sprint-corrections.html | 28 ++++++++++++------------ man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-22-1.png |binary man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/vescovi.Rd |only vignettes/sprint-corrections.Rmd | 2 - 20 files changed, 56 insertions(+), 41 deletions(-)
Title: Dave Armstrong's Miscellaneous Functions
Description: Miscellaneous set of functions I use in my teaching either at the University of Western Ontario or the Inter-university Consortium for Political and Social Research (ICPSR) Summer Program in Quantitative Methods. Broadly, the functions help with presentation and interpretation of LMs and GLMs, but also implement some new tools like Alternating Least Squares Optimal Scaling for dependent variables, a Bayesian analog to the ALSOS algorithm. There are also tools to help understand interactions in both LMs and binary GLMs.
Author: Dave Armstrong [aut, cre]
Maintainer: Dave Armstrong <dave@quantoid.net>
Diff between DAMisc versions 1.5.4 dated 2020-04-23 and 1.6.1 dated 2020-09-11
DESCRIPTION | 16 MD5 | 48 + NAMESPACE | 80 ++ R/DAMisc_functions.R | 1442 ++++++++++++++++++++++++++++++++++++++++++------ R/damisc-package.R | 24 README.md |only build |only inst |only man/DAintfun2.Rd | 3 man/InteractionEx.Rd | 6 man/aclp.Rd | 6 man/alsos.Rd |only man/alsosDV.Rd | 16 man/binVar.Rd |only man/boot.alsos.Rd |only man/cv.lo2.Rd | 2 man/describe_data.Rd |only man/france.Rd | 6 man/ggpie.Rd |only man/impCoef.Rd |only man/inspect.Rd | 4 man/make_assoc_stats.Rd |only man/plot.alsos.Rd |only man/plot.balsos.Rd | 4 man/probci.Rd | 6 man/pwCorrMat.Rd |only man/sumStats.Rd |only man/tTest.Rd |only man/xt.Rd |only vignettes |only 30 files changed, 1444 insertions(+), 219 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre] (<https://orcid.org/0000-0003-4731-4640>)
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.7 dated 2019-04-01 and 0.1.8 dated 2020-09-11
DESCRIPTION | 10 ++-- MD5 | 14 ++--- NAMESPACE | 2 NEWS.md | 1 R/get_alfred_series.R | 39 +++++++++------- build/vignette.rds |binary inst/doc/alfred.R | 12 ++--- inst/doc/alfred.html | 118 +++++++++++++++++++++++++++++--------------------- 8 files changed, 114 insertions(+), 82 deletions(-)
Title: The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Description: Utilities for the Pareto, piecewise Pareto and generalized Pareto distribution
that are useful for reinsurance pricing. In particular, the package provides
a non-trivial algorithm that can be used to match the expected losses of a
tower of reinsurance layers with a layer-independent collective risk model.
The theoretical background of the matching algorithm and most other methods
are described in Ulrich Riegel (2018) <doi:10.1007/s13385-018-0177-3>.
Author: Ulrich Riegel [aut, cre]
Maintainer: Ulrich Riegel <ulrich.riegel@gmx.de>
Diff between Pareto versions 2.2.0 dated 2020-08-03 and 2.2.1 dated 2020-09-11
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 7 + R/Functions.R | 89 +++++++++++++++++++----- build/vignette.rds |binary inst/doc/Pareto.html | 70 +++++++++--------- man/GenPareto_ML_Estimator_Alpha.Rd | 10 ++ man/Pareto_ML_Estimator_Alpha.Rd | 10 ++ man/PiecewisePareto_ML_Estimator_Alpha.Rd | 9 ++ tests/testthat/test_functions_GenPareto.R | 7 + tests/testthat/test_functions_Pareto.R | 16 ++++ tests/testthat/test_functions_PiecewisePareto.R | 10 ++ 12 files changed, 190 insertions(+), 66 deletions(-)
Title: The Full Bayesian Significance Test and the e-Value
Description: Provides access to a range of functions for computing and visualising the Full Bayesian Significance Test (FBST) and the e-value for testing a sharp hypothesis against its alternative. The methods are widely applicable as long as a posterior MCMC sample is available. For details on the computation and theory of the FBST see <arXiv:2005.13181>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>
Diff between fbst versions 1.2 dated 2020-09-04 and 1.3 dated 2020-09-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/fbst.R | 3 +-- build/partial.rdb |binary 4 files changed, 8 insertions(+), 9 deletions(-)
Title: Probability Distribution Functions
Description: Calculates expected values, variance, different moments (kth
moment, truncated mean), stop-loss, mean excess loss, Value-at-Risk (VaR)
and Tail Value-at-Risk (TVaR) as well as some density and cumulative
(survival) functions of continuous, discrete and compound distributions.
This package also includes a visual 'Shiny' component to enable students
to visualize distributions and understand the impact of their parameters.
This package is intended to expand the 'stats' package so as
to enable students to develop an intuition for probability.
Author: Alec James van Rassel [aut, cre, cph],
Gabriel Crépeault-Cauchon [aut, ccp],
Étienne Marceau [tch, sad],
Hélène Cossette [tch, sad],
Laboratoire Act & Risk [fnd, sht],
École d'actuariat de l'Université Laval [fnd, his, uvp],
Natural Sciences and Engineering Research Council of Canada [fnd],
Marc-André Devost [ccp]
Maintainer: Alec James van Rassel <alec.van-rassel.1@ulaval.ca>
Diff between Distributacalcul versions 0.2.2 dated 2020-06-13 and 0.3.0 dated 2020-09-11
Distributacalcul-0.2.2/Distributacalcul/R/BINCOMP.R |only Distributacalcul-0.2.2/Distributacalcul/R/BNCOMP.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_binom.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_hyper.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_logarithmic.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_negbinom.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_pois.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_unif.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_unifD.R |only Distributacalcul-0.2.2/Distributacalcul/R/E_weibull.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_unif.R |only Distributacalcul-0.2.2/Distributacalcul/R/Elim_weibull.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_binom.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_pois.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_unif.R |only Distributacalcul-0.2.2/Distributacalcul/R/Etronq_weibull.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_binom.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_logarithmic.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_negbinom.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/MGF_pois.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_unif.R |only Distributacalcul-0.2.2/Distributacalcul/R/Mexcess_weibull.R |only Distributacalcul-0.2.2/Distributacalcul/R/PCOMP.R |only Distributacalcul-0.2.2/Distributacalcul/R/PGF_binom.R |only Distributacalcul-0.2.2/Distributacalcul/R/PGF_logarithmic.R |only Distributacalcul-0.2.2/Distributacalcul/R/PGF_negbinom.R |only Distributacalcul-0.2.2/Distributacalcul/R/PGF_pois.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_unif.R |only Distributacalcul-0.2.2/Distributacalcul/R/SL_weibull.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_IG.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_beta.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_binom.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_burr.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_erlang.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_exp.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_gamma.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_llogis.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_lnorm.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_norm.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_pareto.R |only Distributacalcul-0.2.2/Distributacalcul/R/TVaR_pois.R |only 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Distributacalcul-0.3.0/Distributacalcul/R/CompBinom.R |only Distributacalcul-0.3.0/Distributacalcul/R/CompNBinom.R |only Distributacalcul-0.3.0/Distributacalcul/R/CompPois.R |only Distributacalcul-0.3.0/Distributacalcul/R/Distributacalcul-package.R |only Distributacalcul-0.3.0/Distributacalcul/R/IG.R |only Distributacalcul-0.3.0/Distributacalcul/R/beta.R |only Distributacalcul-0.3.0/Distributacalcul/R/binom.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateAMHCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateCACopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateClaytonCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateEFGMCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateFrankCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateGumbelCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/bivariateMOCopula.R |only Distributacalcul-0.3.0/Distributacalcul/R/copulaVis.R |only 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Distributacalcul-0.3.0/Distributacalcul/R/nbinom.R |only Distributacalcul-0.3.0/Distributacalcul/R/norm.R |only Distributacalcul-0.3.0/Distributacalcul/R/parametersBox.R |only Distributacalcul-0.3.0/Distributacalcul/R/parametersBoxCopulas.R |only Distributacalcul-0.3.0/Distributacalcul/R/pareto.R |only Distributacalcul-0.3.0/Distributacalcul/R/pois.R |only Distributacalcul-0.3.0/Distributacalcul/R/riskMeasuresBox.R |only Distributacalcul-0.3.0/Distributacalcul/R/simulatedCopulaHexPlot.R |only Distributacalcul-0.3.0/Distributacalcul/R/simulationsPlotBoxCopulas.R |only Distributacalcul-0.3.0/Distributacalcul/R/unif.R |only Distributacalcul-0.3.0/Distributacalcul/R/unifDiscr.R |only Distributacalcul-0.3.0/Distributacalcul/R/weibull.R |only Distributacalcul-0.3.0/Distributacalcul/README.md | 79 + Distributacalcul-0.3.0/Distributacalcul/build |only Distributacalcul-0.3.0/Distributacalcul/inst/CITATION |only Distributacalcul-0.3.0/Distributacalcul/inst/WORDLIST | 134 ++- Distributacalcul-0.3.0/Distributacalcul/inst/doc |only Distributacalcul-0.3.0/Distributacalcul/man/Beta.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/CompBinom.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/CompNBinom.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/CompPois.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Distributacalcul-package.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Erl.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Exp.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Gamma.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/IG.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Lnorm.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Logarithmic.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/NBinom.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Norm.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Pareto.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Pois.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Unif.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/Weibull.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/binom.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateAMH.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateCA.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateClayton.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateEFGM.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateFrank.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateGumbel.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/bivariateMO.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/copulaVis.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/distributacalculVis.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/distributionPlotBoxCopulas.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/distributionPlotBoxCopulasUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/erlang.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/frechet.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/frechetLowerBound.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/frechetUpperBound.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/functionsBox.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/functionsBoxUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/independent.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/llogis.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/momentsBox.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/momentsBoxUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/parametersBox.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/parametersBoxCopulas.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/parametersBoxCopulasUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/parametersBoxUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/riskMeasuresBox.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/riskMeasuresBoxUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/simulatedCopulaHexPlot.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/simulationsPlotBoxCopulas.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/simulationsPlotBoxCopulasUI.Rd |only Distributacalcul-0.3.0/Distributacalcul/man/unifDiscr.Rd |only Distributacalcul-0.3.0/Distributacalcul/tests/testthat |only Distributacalcul-0.3.0/Distributacalcul/tests/testthat.R |only Distributacalcul-0.3.0/Distributacalcul/vignettes |only 399 files changed, 411 insertions(+), 356 deletions(-)
More information about Distributacalcul at CRAN
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More information about SimSurvNMarker at CRAN
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Title: Normalize NanoString miRNA and mRNA Data
Description: A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data.
Author: Daryl M. Waggott
Maintainer: ORPHANED
Diff between NanoStringNorm versions 1.2.1 dated 2017-12-12 and 1.2.1.1 dated 2020-09-11
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
More information about NanoStringNorm at CRAN
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Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to R
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.0.1 dated 2020-08-07 and 1.1.0 dated 2020-09-11
DESCRIPTION | 8 +++---- MD5 | 30 +++++++++++++++++---------- NAMESPACE | 7 ++++++ R/fdata.R | 2 - R/fmt.R | 30 +++++++++++++++++++++++---- R/helpers.R |only README.md | 28 +++++++++++++++++++++---- build/vignette.rds |binary inst/doc/fmtr-vignette.Rmd | 26 +++++++++++++++++++++-- inst/doc/fmtr-vignette.html | 33 +++++++++++++++--------------- man/condition.Rd | 9 +++++++- man/fmt_cnt_pct.Rd |only man/fmt_mean_sd.Rd |only man/fmt_median.Rd |only man/fmt_n.Rd |only man/fmt_quantile_range.Rd |only man/fmt_range.Rd |only tests/testthat/test-fmt.R | 46 +++++++++++++++++++++++++++++++++++++++++- tests/testthat/test-helpers.R |only vignettes/fmtr-vignette.Rmd | 26 +++++++++++++++++++++-- 20 files changed, 197 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-30 1.1
2014-01-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-15 0.9.62
2017-05-04 0.9.58
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-06 1.3.3
2015-07-17 1.3
2014-11-20 1.2
2014-09-11 1.1
2014-06-06 1.0
Title: Quantile Regression for Binary Longitudinal Data
Description: Implements the Bayesian quantile regression model for binary longitudinal data
(QBLD) developed in Rahman and Vossmeyer (2019) <DOI:10.1108/S0731-90532019000040B009>.
The model handles both fixed and random effects and implements both a blocked
and an unblocked Gibbs sampler for posterior inference.
Author: Ayush Agarwal [aut, cre], Dootika Vats [ctb]
Maintainer: Ayush Agarwal<ayush.agarwal50@gmail.com>
Diff between qbld versions 1.0 dated 2020-09-10 and 1.0.1 dated 2020-09-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/partial.rdb |binary inst/doc/qbld.pdf |binary src/rgigcpp.cpp | 2 +- src/sampleZcpp.cpp | 8 ++++---- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Genetic Analysis of Multi-Parent Recombinant Inbred Lines
Description: Constructing linkage maps, reconstructing haplotypes,
estimating linkage disequilibrium and quantitative trait loci
(QTL) mapping in multi-parent Recombinant Inbred Lines designs.
Author: Rohan Shah [aut, cre],
Emma Huang [aut],
Matthew Morell [ctb],
Alex Whan [ctb],
Colin Cavanagh [ctb]
Maintainer: Rohan Shah <cran@bookshah.com>
Diff between mpMap2 versions 1.0.3 dated 2020-04-23 and 1.0.4 dated 2020-09-11
mpMap2-1.0.3/mpMap2/README.md |only mpMap2-1.0.4/mpMap2/DESCRIPTION | 10 - mpMap2-1.0.4/mpMap2/MD5 | 89 +++++----- mpMap2-1.0.4/mpMap2/R/eightWayPedigreeImproperFunnels.R | 2 mpMap2-1.0.4/mpMap2/R/eightWayPedigreeRandomFunnels.R | 2 mpMap2-1.0.4/mpMap2/R/eightWayPedigreeSingleFunnel.R | 2 mpMap2-1.0.4/mpMap2/inst/doc/mpMap2.pdf |binary mpMap2-1.0.4/mpMap2/man/eightParentPedigreeSingleFunnel.Rd | 2 mpMap2-1.0.4/mpMap2/src/arsaRaw.cpp | 1 mpMap2-1.0.4/mpMap2/src/computeAllEpistaticChiSquared.cpp | 3 mpMap2-1.0.4/mpMap2/src/computeGenotypeProbabilities.cpp | 1 mpMap2-1.0.4/mpMap2/src/estimateRF.cpp | 32 ++- mpMap2-1.0.4/mpMap2/src/estimateRFSingleDesign.cpp | 2 mpMap2-1.0.4/mpMap2/src/estimateRFSingleDesignInternal.cpp | 5 mpMap2-1.0.4/mpMap2/src/estimateRFSingleDesignInternal.h | 2 mpMap2-1.0.4/mpMap2/src/estimateRFSpecificDesign.cpp | 47 ++--- mpMap2-1.0.4/mpMap2/src/estimateRFSpecificDesign.h | 11 - mpMap2-1.0.4/mpMap2/src/forwardsBackwardsFiniteSelfing.h | 3 mpMap2-1.0.4/mpMap2/src/forwardsBackwardsFiniteSelfingApplyFunnel.h | 4 mpMap2-1.0.4/mpMap2/src/forwardsBackwardsFiniteSelfingApplyIntercrossing.h | 4 mpMap2-1.0.4/mpMap2/src/forwardsBackwardsInfiniteSelfing.h | 3 mpMap2-1.0.4/mpMap2/src/forwardsBackwardsInfiniteSelfingApplyFunnel.h | 4 mpMap2-1.0.4/mpMap2/src/forwardsBackwardsInfiniteSelfingApplyIntercrossing.h | 4 mpMap2-1.0.4/mpMap2/src/getAllFunnelsIncAIC.cpp | 3 mpMap2-1.0.4/mpMap2/src/impute.cpp | 3 mpMap2-1.0.4/mpMap2/src/imputeFounders.cpp | 1 mpMap2-1.0.4/mpMap2/src/matrixChunks.cpp | 5 mpMap2-1.0.4/mpMap2/src/order.cpp | 3 mpMap2-1.0.4/mpMap2/src/parsePurdy.cpp | 3 mpMap2-1.0.4/mpMap2/src/probabilities16.cpp | 3 mpMap2-1.0.4/mpMap2/src/probabilities4.cpp | 3 mpMap2-1.0.4/mpMap2/src/probabilities8.cpp | 5 mpMap2-1.0.4/mpMap2/src/recodeFoundersFinalsHets.cpp | 3 mpMap2-1.0.4/mpMap2/src/reorderPedigree.cpp | 4 mpMap2-1.0.4/mpMap2/src/sixteenParentPedigreeRandomFunnels.cpp | 3 mpMap2-1.0.4/mpMap2/src/stripPedigree.cpp | 13 - mpMap2-1.0.4/mpMap2/src/throwInternal.cpp |only mpMap2-1.0.4/mpMap2/src/throwInternal.h |only mpMap2-1.0.4/mpMap2/src/viterbiFiniteSelfing.h | 3 mpMap2-1.0.4/mpMap2/src/viterbiFiniteSelfingApplyFunnel.h | 12 - mpMap2-1.0.4/mpMap2/src/viterbiFiniteSelfingApplyIntercrossing.h | 4 mpMap2-1.0.4/mpMap2/src/viterbiInfiniteSelfing.h | 3 mpMap2-1.0.4/mpMap2/src/viterbiInfiniteSelfingApplyFunnel.h | 4 mpMap2-1.0.4/mpMap2/src/viterbiInfiniteSelfingApplyIntercrossing.h | 4 mpMap2-1.0.4/mpMap2/tests/slow/test-arsaRaw.R | 2 mpMap2-1.0.4/mpMap2/tests/slow/test-imputeTheta.R | 6 mpMap2-1.0.4/mpMap2/tests/slow/test-openmp.R | 4 47 files changed, 171 insertions(+), 156 deletions(-)
Title: Effect + Residual Modelling
Description: Multivariate modeling of data after deflation of interfering effects (EF Mosleth et al. (2020) <doi:10.1016/B978-0-12-409547-2.14882-6>). The effects can be estimates from designed experiments, non-overlapping clusters or continuous effects.
Author: Kristian Hovde Liland [aut, cre],
Ellen Færgestad Mosleth [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between ER versions 1.0.0 dated 2020-08-17 and 1.0.2 dated 2020-09-11
ER-1.0.0/ER/data/MS.rda |only ER-1.0.0/ER/man/MS.Rd |only ER-1.0.2/ER/DESCRIPTION | 16 ++++++++-------- ER-1.0.2/ER/MD5 | 24 +++++++++++------------- ER-1.0.2/ER/R/ER.R | 27 --------------------------- ER-1.0.2/ER/R/confints.R | 11 +---------- ER-1.0.2/ER/R/datasets.R | 31 ------------------------------- ER-1.0.2/ER/R/elastic.R | 9 +-------- ER-1.0.2/ER/R/pls.R | 22 ---------------------- ER-1.0.2/ER/man/ER.Rd | 27 --------------------------- ER-1.0.2/ER/man/confints.Rd | 11 +---------- ER-1.0.2/ER/man/elastic.Rd | 12 ++---------- ER-1.0.2/ER/man/pls.Rd | 23 ----------------------- ER-1.0.2/ER/man/reexports.Rd | 4 ++-- 14 files changed, 26 insertions(+), 191 deletions(-)
Title: A Generalized Multiclass Support Vector Machine
Description: The GenSVM classifier is a generalized multiclass support vector
machine (SVM). This classifier aims to find decision boundaries that
separate the classes with as wide a margin as possible. In GenSVM, the
loss function is very flexible in the way that misclassifications are
penalized. This allows the user to tune the classifier to the dataset
at hand and potentially obtain higher classification accuracy than
alternative multiclass SVMs. Moreover, this flexibility means that
GenSVM has a number of other multiclass SVMs as special cases. One of
the other advantages of GenSVM is that it is trained in the primal
space, allowing the use of warm starts during optimization. This
means that for common tasks such as cross validation or repeated model
fitting, GenSVM can be trained very quickly. Based on: G.J.J. van den
Burg and P.J.F. Groenen (2018) <https://www.jmlr.org/papers/v17/14-526.html>.
Author: Gertjan van den Burg [aut, cre],
Patrick Groenen [ctb]
Maintainer: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Diff between gensvm versions 0.1.4 dated 2020-09-07 and 0.1.5 dated 2020-09-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/gensvm/src/gensvm_kernel.c | 27 +++++++++++++++------------ 4 files changed, 25 insertions(+), 18 deletions(-)
Title: Association Analysis of Bivariate Survival Data Based on Copulas
Description: Perform association analysis of bivariate survival data based on copula models.
Two different ways to estimate the association parameter in copula models are implemented.
A goodness-of-fit test for a given copula model is implemented.
See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
A more general reference for the copula-based analysis of bivariate survival data is
Emura, Matsui, and Rondeau (2019) <doi:10.1007/978-981-13-3516-7>.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.surv versions 1.0 dated 2018-12-03 and 1.1 dated 2020-09-11
DESCRIPTION | 13 ++++++++----- MD5 | 28 +++++++++++++++++++--------- NAMESPACE | 3 ++- R/Test.Clayton.R | 22 ++++++++++++---------- R/Test.Gumbel.R |only R/U1.Clayton.R | 30 +++++++++++++++++++----------- R/U1.Gumbel.R |only R/U2.Clayton.R | 10 +++++----- R/U2.Gumbel.R |only R/simu.Clayton.R |only R/simu.Gumbel.R |only man/Copula.surv-package.Rd | 9 ++++++--- man/Test.Clayton.Rd | 32 +++++++++++--------------------- man/Test.Gumbel.Rd |only man/U1.Clayton.Rd | 35 +++++++++++------------------------ man/U1.Gumbel.Rd |only man/U2.Clayton.Rd | 32 +++++++++----------------------- man/U2.Gumbel.Rd |only man/simu.Clayton.Rd |only man/simu.Gumbel.Rd |only 20 files changed, 102 insertions(+), 112 deletions(-)
Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex. This package is described in Fong et al. (2013) <DOI:10.1093/bioinformatics/btt456>.
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between nCal versions 2020.5-21 dated 2020-05-21 and 2020.9-10 dated 2020-09-11
nCal-2020.5-21/nCal/inst/doc/desktop.ini |only nCal-2020.5-21/nCal/man/read.luminex.xls.Rd |only nCal-2020.9-10/nCal/ChangeLog | 65 ++++++++++++------------ nCal-2020.9-10/nCal/DESCRIPTION | 6 +- nCal-2020.9-10/nCal/MD5 | 14 ++--- nCal-2020.9-10/nCal/NAMESPACE | 2 nCal-2020.9-10/nCal/build/vignette.rds |binary nCal-2020.9-10/nCal/inst/doc/nCal-vignette.pdf |binary nCal-2020.9-10/nCal/inst/unitTests/runit.ncal.R | 16 ++--- 9 files changed, 52 insertions(+), 51 deletions(-)
Title: A Tidy Implementation of Heatmap
Description: This is a tidy implementation for heatmap. At the
moment it is based on the (great) package 'ComplexHeatmap'. The goal
of this package is to interface a tidy data frame with this powerful
tool. Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names). Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...). Labels size
adjusted by row and column total number. Default use of Brewer and
Viridis palettes.
Author: Stefano Mangiola [aut, cre],
Anthony Papenfuss [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyHeatmap versions 1.1.4 dated 2020-08-07 and 1.1.5 dated 2020-09-11
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ R/deprecated_framework.R | 16 ++++----- R/functions.R | 24 ++++++------- R/methods.R | 80 ++------------------------------------------- R/utilities.R | 72 +++++++++++++++++++++++++++------------- build/tidyHeatmap.pdf |binary inst/CITATION | 30 ++++++++-------- inst/doc/introduction.html | 6 +-- man/heatmap-methods.Rd | 39 +-------------------- man/input_heatmap.Rd | 4 +- tests/testthat/tests.R | 14 ------- 12 files changed, 108 insertions(+), 205 deletions(-)
Title: Nonparametric Tests via Permutations
Description: Robust permutation tests for location, correlation, and regression problems, as described in Helwig (2019a) <doi:10.1002/wics.1457> and Helwig (2019b) <doi:10.1016/j.neuroimage.2019.116030>. Univariate and multivariate tests are supported. For each problem, exact tests and Monte Carlo approximations are available. Parallel computing is implemented via the 'parallel' package.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between nptest versions 1.0-0 dated 2019-04-23 and 1.0-1 dated 2020-09-11
ChangeLog |only DESCRIPTION | 12 ++++++------ MD5 | 33 +++++++++++++++++++-------------- NAMESPACE | 7 ++++++- R/np.cor.test.R | 9 ++++++++- R/np.reg.test.R | 11 ++++++++++- R/plot.np.cor.test.R |only R/plot.np.loc.test.R |only R/plot.np.reg.test.R |only R/rand.test.cor.R | 2 +- R/rand.test.lm1.R | 2 +- R/rand.test.lm2.R | 2 +- R/rand.test.one.R | 2 +- R/rand.test.two.R | 2 +- build/partial.rdb |binary man/np.cor.test.Rd | 10 +++++----- man/np.loc.test.Rd | 6 +++--- man/np.reg.test.Rd | 10 ++++++---- man/nptest-package.Rd | 4 +++- man/plot.Rd |only 20 files changed, 71 insertions(+), 41 deletions(-)
Title: Generalized Price and Quantity Indexes
Description: A small package for calculating lots of different price indexes, and by extension quantity indexes. Provides tools to build and work with any type of generalized bilateral index (of which most price indexes are), along with a few important indexes that don't belong to the generalized family. Implements and extends many of the methods in Balk (2008, ISBN:978-1-107-40496-0) and ILO, IMF, OECD, Eurostat, UN, and World Bank (2004, ISBN:92-2-113699-X) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between gpindex versions 0.1.2 dated 2020-07-25 and 0.2.0 dated 2020-09-11
gpindex-0.1.2/gpindex/man/change_weights.Rd |only gpindex-0.1.2/gpindex/man/factor_weights.Rd |only gpindex-0.1.2/gpindex/man/index_weights.Rd |only gpindex-0.1.2/gpindex/man/scale_weights.Rd |only gpindex-0.2.0/gpindex/DESCRIPTION | 7 gpindex-0.2.0/gpindex/MD5 | 38 +- gpindex-0.2.0/gpindex/NAMESPACE | 35 -- gpindex-0.2.0/gpindex/NEWS | 20 + gpindex-0.2.0/gpindex/R/helpers.R |only gpindex-0.2.0/gpindex/R/index_weights.R | 111 +++----- gpindex-0.2.0/gpindex/R/indices.R | 299 +++++++++-------------- gpindex-0.2.0/gpindex/R/means.R | 186 +++++--------- gpindex-0.2.0/gpindex/R/weights.R | 117 ++------- gpindex-0.2.0/gpindex/README.md | 17 - gpindex-0.2.0/gpindex/man/generalized_logmean.Rd | 106 ++++++-- gpindex-0.2.0/gpindex/man/generalized_mean.Rd | 95 +++++-- gpindex-0.2.0/gpindex/man/gpindex.Rd | 6 gpindex-0.2.0/gpindex/man/indices.Rd | 246 +++++++++++++++--- gpindex-0.2.0/gpindex/man/pq6.Rd | 6 gpindex-0.2.0/gpindex/man/weights.Rd |only gpindex-0.2.0/gpindex/tests/test_indices.R | 93 +++---- gpindex-0.2.0/gpindex/tests/test_means.R | 119 ++++----- gpindex-0.2.0/gpindex/tests/test_weights.R | 127 +++++---- 23 files changed, 860 insertions(+), 768 deletions(-)
Title: Retrieve Data on European Union Law
Description: Access to data on European Union laws and court decisions made easy with pre-defined 'SPARQL' queries and 'GET' requests.
Author: Michal Ovadek [aut, cre, cph] (<https://orcid.org/0000-0002-2552-2580>)
Maintainer: Michal Ovadek <michal.ovadek@gmail.com>
Diff between eurlex versions 0.2.1 dated 2020-08-19 and 0.3.1 dated 2020-09-11
DESCRIPTION | 9 ++- MD5 | 29 ++++++----- NAMESPACE | 1 NEWS.md |only R/elx_council_votes.R |only R/elx_curia_list.R | 21 ++++++-- R/elx_fetch_data.R | 117 +++++++++++++++++++++++++++++++++++++++++++---- R/elx_label_eurovoc.R | 12 +++- R/elx_make_query.R | 42 +--------------- R/elx_run_query.R | 16 ++---- README.md | 7 ++ inst/doc/eurlexpkg.Rmd | 4 - inst/doc/eurlexpkg.html | 6 +- man/elx_council_votes.Rd |only man/elx_curia_list.Rd | 7 +- man/elx_fetch_data.Rd | 10 ++-- vignettes/eurlexpkg.Rmd | 4 - 17 files changed, 187 insertions(+), 98 deletions(-)