Title: Expressions with Statistical Details
Description: Statistical processing backend for 'ggstatsplot',
this package creates expressions with details from statistical tests.
Currently, it supports only the most common types of statistical
tests: parametric, nonparametric, robust, and Bayesian versions of
t-test/ANOVA, correlation analyses, contingency table analysis, and
meta-analysis.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 0.4.2 dated 2020-06-20 and 0.5.0 dated 2020-09-12
DESCRIPTION | 16 MD5 | 79 +-- NAMESPACE | 3 NEWS.md | 6 R/data.R | 20 R/helpers_anova_expressions.R | 39 - R/helpers_contingency_tabs_expressions.R | 8 R/helpers_corr_test_expressions.R | 11 R/helpers_meta_analysis_expressions.R | 69 --- R/helpers_t_onesample_expressions.R | 8 R/helpers_t_test_expressions.R | 12 R/reexports.R | 6 README.md | 631 ++++++++++++++--------------- inst/doc/stats_details.Rmd | 10 inst/doc/stats_details.html | 47 -- man/expr_anova_nonparametric.Rd | 14 man/expr_anova_parametric.Rd | 16 man/expr_anova_robust.Rd | 18 man/expr_contingency_tab.Rd | 36 - man/expr_corr_test.Rd | 23 - man/expr_meta_bayes.Rd | 4 man/expr_meta_parametric.Rd | 22 - man/expr_meta_robust.Rd | 4 man/expr_t_bayes.Rd | 8 man/expr_t_onesample.Rd | 28 - man/expr_t_parametric.Rd | 14 man/expr_t_robust.Rd | 22 - man/figures/README-anova_parametric1-1.png |binary man/figures/README-cont_tabs1-1.png |only man/figures/README-ggpubr_anova-1.png |binary man/figures/README-t_two-1.png |binary man/movies_long.Rd | 10 man/movies_wide.Rd | 10 man/reexports.Rd | 3 tests/testthat/test-expr_anova_bayes.R | 59 +- tests/testthat/test-expr_corr_test.R | 20 tests/testthat/test-expr_meta_bayes.R | 2 tests/testthat/test-expr_meta_robust.R | 2 tests/testthat/test-expr_t_bayes.R | 95 ++-- tests/testthat/test-expr_t_onesample.R | 42 - vignettes/stats_details.Rmd | 10 41 files changed, 658 insertions(+), 769 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet
Protocol) addresses and networks, inspired by the Python 'ipaddress'
module. Offers full support for both IPv4 and IPv6 (Internet Protocol
versions 4 and 6) address spaces. It is specifically designed to work
well with the 'tidyverse'.
Author: David Hall [aut, cre] (<https://orcid.org/0000-0002-2193-0480>)
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.5.0 dated 2020-08-26 and 0.5.1 dated 2020-09-12
ipaddress-0.5.0/ipaddress/R/collapse_exclude.R |only ipaddress-0.5.0/ipaddress/R/other_repr.R |only ipaddress-0.5.0/ipaddress/R/summarize_address_range.R |only ipaddress-0.5.0/ipaddress/inst/include/ipaddress/IpAddressVector.h |only ipaddress-0.5.0/ipaddress/inst/include/ipaddress/IpNetworkVector.h |only ipaddress-0.5.0/ipaddress/inst/include/ipaddress/warn.h |only ipaddress-0.5.0/ipaddress/src/basic.cpp |only ipaddress-0.5.0/ipaddress/src/collapse_exclude.cpp |only ipaddress-0.5.0/ipaddress/src/collapse_exclude.h |only ipaddress-0.5.0/ipaddress/src/iterative.h |only ipaddress-0.5.0/ipaddress/src/other_repr.cpp |only ipaddress-0.5.0/ipaddress/src/other_repr.h |only ipaddress-0.5.0/ipaddress/src/sample.h |only ipaddress-0.5.0/ipaddress/tests/testthat/test-collapse_exclude.R |only ipaddress-0.5.0/ipaddress/tests/testthat/test-other_repr.R |only ipaddress-0.5.0/ipaddress/tests/testthat/test-summarize_address_range.R |only ipaddress-0.5.1/ipaddress/DESCRIPTION | 13 ipaddress-0.5.1/ipaddress/MD5 | 94 +- ipaddress-0.5.1/ipaddress/NAMESPACE | 1 ipaddress-0.5.1/ipaddress/NEWS.md | 10 ipaddress-0.5.1/ipaddress/R/RcppExports.R | 136 +-- ipaddress-0.5.1/ipaddress/R/address_ranges.R |only ipaddress-0.5.1/ipaddress/R/ip_address.R | 3 ipaddress-0.5.1/ipaddress/R/ip_interface.R | 7 ipaddress-0.5.1/ipaddress/R/ip_network.R | 7 ipaddress-0.5.1/ipaddress/R/ip_to_binary.R |only ipaddress-0.5.1/ipaddress/R/ip_to_bytes.R |only ipaddress-0.5.1/ipaddress/R/ip_to_hostname.R |only ipaddress-0.5.1/ipaddress/R/ip_to_integer.R |only ipaddress-0.5.1/ipaddress/R/reverse_pointer.R |only ipaddress-0.5.1/ipaddress/inst/doc/ipaddress-examples.html | 24 ipaddress-0.5.1/ipaddress/inst/include/ipaddress.h |only ipaddress-0.5.1/ipaddress/inst/include/ipaddress/IpAddress.h |only ipaddress-0.5.1/ipaddress/inst/include/ipaddress/IpNetwork.h |only ipaddress-0.5.1/ipaddress/inst/include/ipaddress/bitwise.h | 99 +- ipaddress-0.5.1/ipaddress/inst/include/ipaddress/count_zeros.h |only ipaddress-0.5.1/ipaddress/inst/include/ipaddress/encoding.h | 212 ++++- ipaddress-0.5.1/ipaddress/inst/include/ipaddress/endian.h |only ipaddress-0.5.1/ipaddress/inst/include/ipaddress/masking.h | 125 +-- ipaddress-0.5.1/ipaddress/inst/include/ipaddress/to_string.h |only ipaddress-0.5.1/ipaddress/man/collapse_networks.Rd | 2 ipaddress-0.5.1/ipaddress/man/exclude_networks.Rd | 6 ipaddress-0.5.1/ipaddress/man/ip_to_binary.Rd | 2 ipaddress-0.5.1/ipaddress/man/ip_to_bytes.Rd | 19 ipaddress-0.5.1/ipaddress/man/ip_to_hostname.Rd | 2 ipaddress-0.5.1/ipaddress/man/ip_to_integer.Rd | 2 ipaddress-0.5.1/ipaddress/man/reverse_pointer.Rd | 2 ipaddress-0.5.1/ipaddress/man/summarize_address_range.Rd | 2 ipaddress-0.5.1/ipaddress/src/RcppExports.cpp | 408 ++++------ ipaddress-0.5.1/ipaddress/src/address_ranges.cpp |only ipaddress-0.5.1/ipaddress/src/ip_address.cpp |only ipaddress-0.5.1/ipaddress/src/ip_network.cpp |only ipaddress-0.5.1/ipaddress/src/ip_to_binary.cpp |only ipaddress-0.5.1/ipaddress/src/ip_to_bytes.cpp |only ipaddress-0.5.1/ipaddress/src/ip_to_hostname.cpp |only ipaddress-0.5.1/ipaddress/src/ip_to_integer.cpp |only ipaddress-0.5.1/ipaddress/src/masking.cpp |only ipaddress-0.5.1/ipaddress/src/networks.cpp | 362 -------- ipaddress-0.5.1/ipaddress/src/operators.cpp | 192 +--- ipaddress-0.5.1/ipaddress/src/reserved.cpp | 192 ++-- ipaddress-0.5.1/ipaddress/src/reverse_pointer.cpp |only ipaddress-0.5.1/ipaddress/src/sample.cpp |only ipaddress-0.5.1/ipaddress/src/sequence.cpp |only ipaddress-0.5.1/ipaddress/src/warn.h |only ipaddress-0.5.1/ipaddress/tests/testthat/test-address_ranges.R |only ipaddress-0.5.1/ipaddress/tests/testthat/test-ip_to_binary.R |only ipaddress-0.5.1/ipaddress/tests/testthat/test-ip_to_bytes.R |only ipaddress-0.5.1/ipaddress/tests/testthat/test-ip_to_hostname.R |only ipaddress-0.5.1/ipaddress/tests/testthat/test-ip_to_integer.R |only ipaddress-0.5.1/ipaddress/tests/testthat/test-operators.R | 17 ipaddress-0.5.1/ipaddress/tests/testthat/test-reverse_pointer.R |only 71 files changed, 861 insertions(+), 1078 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.4.6 dated 2020-04-29 and 1.5.1 dated 2020-09-12
diveMove-1.4.6/diveMove/inst/doc/diveMove.Rnw |only diveMove-1.4.6/diveMove/inst/doc/diveMove.pdf |only diveMove-1.4.6/diveMove/tests/calibrations.R |only diveMove-1.4.6/diveMove/tests/class-tests.R |only diveMove-1.4.6/diveMove/tests/final-stats.R |only diveMove-1.4.6/diveMove/vignettes/Makefile |only diveMove-1.4.6/diveMove/vignettes/diveMove.Rnw |only diveMove-1.5.1/diveMove/DESCRIPTION | 13 +- diveMove-1.5.1/diveMove/MD5 | 50 ++++---- diveMove-1.5.1/diveMove/NAMESPACE | 4 diveMove-1.5.1/diveMove/NEWS | 6 + diveMove-1.5.1/diveMove/R/AllMethod.R | 41 +++--- diveMove-1.5.1/diveMove/R/plotTDR.R | 111 ++++++++++++++++++ diveMove-1.5.1/diveMove/R/plotZOC.R | 2 diveMove-1.5.1/diveMove/R/zoc.R | 63 +++++----- diveMove-1.5.1/diveMove/README.md | 7 - diveMove-1.5.1/diveMove/build/vignette.rds |binary diveMove-1.5.1/diveMove/data/divesTDRzoc.RData |only diveMove-1.5.1/diveMove/inst/doc/diveMove.R | 126 ++++++++------------- diveMove-1.5.1/diveMove/inst/doc/diveMove.Rmd |only diveMove-1.5.1/diveMove/inst/doc/diveMove.html |only diveMove-1.5.1/diveMove/inst/tinytest |only diveMove-1.5.1/diveMove/man/calibrateDepth.Rd | 17 ++ diveMove-1.5.1/diveMove/man/detPhase-internal.Rd | 2 diveMove-1.5.1/diveMove/man/diveMove-internal.Rd | 1 diveMove-1.5.1/diveMove/man/diveMove-package.Rd | 2 diveMove-1.5.1/diveMove/man/dives.Rd | 8 + diveMove-1.5.1/diveMove/man/extractDive-methods.Rd | 4 diveMove-1.5.1/diveMove/man/plotTDR-methods.Rd | 44 +------ diveMove-1.5.1/diveMove/tests/tinytest.R |only diveMove-1.5.1/diveMove/vignettes/auto |only diveMove-1.5.1/diveMove/vignettes/diveMove.Rmd |only 32 files changed, 294 insertions(+), 207 deletions(-)
Title: Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information
returned online by Google Trends is provided. Trends (number of
hits) over the time as well as geographic representation of the
results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.4.6 dated 2020-05-17 and 1.4.7 dated 2020-09-12
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 10 ++++++++++ R/countries.R | 2 +- R/related_topics.R | 2 +- R/sysdata.rda |binary R/zzz.R | 15 ++++++++++++++- README.md | 2 +- data/categories.rda |binary data/countries.rda |binary inst/tinytest/test_encoding_does_not_change.R | 2 ++ man/countries.Rd | 2 +- 12 files changed, 46 insertions(+), 21 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, Ph.D. <technometrics.org>
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.4 dated 2020-05-28 and 3.5 dated 2020-09-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 8 ++++++++ R/roc.malmquist.R | 30 +++++++++++++++++------------- 4 files changed, 32 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-15 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-31 0.5
2012-08-16 0.4-7
2012-05-15 0.4-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-27 1.2.8
2020-03-04 1.2.7.1
2020-02-19 1.2.7
2019-08-05 1.2.6
2018-11-20 1.2.5
2018-08-13 1.2.4
2018-04-30 1.2.3.1
2018-02-09 1.2.3
2017-03-31 1.2.2
2017-02-26 1.2.1
2017-02-04 1.2
2015-05-29 1.1.1
2015-02-16 1.1.0
2014-11-18 1.0
2014-05-13 0.2.8
2014-02-20 0.2.7
2013-12-17 0.2.6
2013-11-04 0.2.5
2013-07-12 0.2.4
2013-05-22 0.2.3
2013-05-21 0.2.2
2013-04-24 0.2.1
2013-01-21 0.1-13
2012-11-20 0.1-12
2012-07-06 0.1-11
2012-05-14 0.1-8
Title: Extract, Analyze and Visualize Signatures for Genomic Variations
Description: Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut, ctb] (<https://orcid.org/0000-0002-7736-0077>),
Tao Wu [aut, ctb],
Ziyu Tao [aut, ctb],
Geoffrey Macintyre [ctb],
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 1.0.13 dated 2020-08-27 and 1.0.16 dated 2020-09-12
DESCRIPTION | 11 - MD5 | 83 ++++++----- NAMESPACE | 6 NEWS.md | 31 ++++ R/CN-mutex-classification-methed.R | 40 +++++ R/generate_matrices.R | 14 + R/get_bayesian_result.R | 6 R/get_sig_cancer_type_index.R |only R/get_sig_similarity.R | 2 R/output.R |only R/show_cn_group_profile.R | 92 +++++++++--- R/show_cn_profile.R | 92 +++++++++++- R/show_group_distribution.R |only R/show_sig_exposure.R | 2 R/show_sig_profile.R | 45 +++++ R/sig_auto_extract.R | 70 ++++++++- R/sig_estimate.R | 9 + R/sig_extract.R | 41 ++++- R/sig_fit.R | 211 ++++++++++++++++++++++------ R/sig_fit_bootstrap.R | 30 --- R/sig_fit_bootstrap_batch.R | 19 ++ R/sig_tally.R | 29 +++ R/sigprofiler.R | 106 +++++++++++--- R/transform_seg_table.R | 31 ++-- R/utils.R | 16 +- README.md | 18 +- inst/extdata/cosmic2_record_by_cancer.rds |only inst/extdata/signature_record_by_cancer.rds |only man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/get_sig_cancer_type_index.Rd |only man/output_bootstrap.Rd |only man/output_fit.Rd |only man/output_sig.Rd |only man/output_tally.Rd |only man/show_cn_group_profile.Rd | 9 + man/show_cn_profile.Rd | 18 ++ man/show_group_distribution.Rd |only man/show_sig_profile.Rd | 2 man/sig_auto_extract.Rd | 4 man/sig_extract.Rd | 2 man/sig_fit.Rd | 7 man/sig_fit_bootstrap.Rd | 6 man/sig_fit_bootstrap_batch.Rd | 6 man/sigprofiler.Rd | 32 +++- 48 files changed, 859 insertions(+), 231 deletions(-)
Title: Reactivity Visualizer for 'shiny'
Description: Building interactive web applications with R is incredibly easy
with 'shiny'. Behind the scenes, 'shiny' builds a reactive graph that can
quickly become intertwined and difficult to debug. 'reactlog'
(Schloerke 2019) <doi:10.5281/zenodo.2591517> provides a visual insight into
that black box of 'shiny' reactivity by constructing a directed dependency
graph of the application's reactive state at any time point in a reactive
recording.
Author: Barret Schloerke [aut, cre] (<https://orcid.org/0000-0001-9986-114X>),
Joe Cheng [ctb],
RStudio [cph, fnd]
Maintainer: Barret Schloerke <barret@rstudio.com>
Diff between reactlog versions 1.0.0 dated 2019-03-22 and 1.1.0 dated 2020-09-12
reactlog-1.0.0/reactlog/LICENSE.note |only reactlog-1.1.0/reactlog/DESCRIPTION | 16 - reactlog-1.1.0/reactlog/LICENSE |only reactlog-1.1.0/reactlog/MD5 | 49 ++- reactlog-1.1.0/reactlog/NAMESPACE | 4 reactlog-1.1.0/reactlog/NEWS.md | 11 reactlog-1.1.0/reactlog/R/renderReactLog.R | 24 - reactlog-1.1.0/reactlog/R/setReactLog.R |only reactlog-1.1.0/reactlog/R/shinyModule.R |only reactlog-1.1.0/reactlog/R/showReactLog.R | 48 ++- reactlog-1.1.0/reactlog/README.md | 36 +- reactlog-1.1.0/reactlog/build/vignette.rds |binary reactlog-1.1.0/reactlog/inst/doc/reactlog.R | 50 +-- reactlog-1.1.0/reactlog/inst/doc/reactlog.Rmd | 14 - reactlog-1.1.0/reactlog/inst/doc/reactlog.html | 131 ++++++---- reactlog-1.1.0/reactlog/inst/examples |only reactlog-1.1.0/reactlog/inst/reactlog/reactlogAsset/reactlog.js | 53 ---- reactlog-1.1.0/reactlog/man/figures |only reactlog-1.1.0/reactlog/man/reactlog_module.Rd |only reactlog-1.1.0/reactlog/man/reactlog_show.Rd | 25 + reactlog-1.1.0/reactlog/man/reactlog_write.Rd | 10 reactlog-1.1.0/reactlog/man/setReactLog.Rd |only reactlog-1.1.0/reactlog/tests |only reactlog-1.1.0/reactlog/vignettes/reactlog.Rmd | 14 - 24 files changed, 268 insertions(+), 217 deletions(-)
Title: Tools to Calculate Climate Targets for Financial Portfolios
Description: These tools help you to assess if a financial
portfolio aligns with climate goals. They summarize key metrics
attributed to the portfolio (e.g. production, emission factors), and
calculate targets based on climate scenarios. They implement in R the
last step of the free software 'PACTA' (Paris Agreement Capital
Transition Assessment; <https://2degrees-investing.org/>). Financial
institutions use 'PACTA' to study how their capital allocation impacts
the climate.
Author: Jackson Hoffart [aut, cre] (<https://orcid.org/0000-0002-8600-5042>),
Mauro Lepore [aut, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Klaus Hogedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.analysis versions 0.1.0 dated 2020-09-03 and 0.1.1 dated 2020-09-12
DESCRIPTION | 8 ++-- LICENSE |only MD5 | 19 +++++----- NAMESPACE | 1 NEWS.md | 13 +++++++ R/imports.R | 4 +- R/target_market_share.R | 55 ++++++++++++++++++++++++------ R/target_sda.R | 2 - README.md | 13 +++++++ inst/WORDLIST | 3 + tests/testthat/test-target_market_share.R | 22 ++++++++++++ 11 files changed, 114 insertions(+), 26 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Automatic Marking of R Assignments
Description: Automatic marking of R assignments for students and teachers based
on 'testthat' test suites.
Author: Mans Magnusson, Oscar Pettersson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between markmyassignment versions 0.8.2 dated 2019-04-28 and 0.8.3 dated 2020-09-12
DESCRIPTION | 10 MD5 | 34 - R/mark_my_assignment.R | 1 build/vignette.rds |binary inst/doc/markmyassignment-teacher.R | 16 inst/doc/markmyassignment-teacher.Rmd | 2 inst/doc/markmyassignment-teacher.html | 354 +++++++++++++-- inst/doc/markmyassignment.R | 32 - inst/doc/markmyassignment.html | 744 +++++++++++++++++++++------------ man/directories.Rd | 2 man/expect_function_arguments.Rd | 9 man/expect_function_code.Rd | 9 man/mark_my_assignment.Rd | 9 man/mark_my_dir.Rd | 10 man/mark_my_file.Rd | 11 man/markmyassignment.Rd | 1 man/run_test_suite.Rd | 3 vignettes/markmyassignment-teacher.Rmd | 2 18 files changed, 869 insertions(+), 380 deletions(-)
More information about markmyassignment at CRAN
Permanent link
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 0.9.6 dated 2020-08-26 and 0.9.7 dated 2020-09-12
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 13 +++++++++++++ R/CreateTableOneJS.R | 23 +++++++++++++++++++++-- R/forestcox.R | 2 +- R/label.R | 8 +++++--- R/svyCreateTableOneJS.R | 22 +++++++++++++++++++++- inst/doc/jstable.html | 30 +++++++++++++++--------------- man/CreateTableOneJS.Rd | 7 +++++-- man/svyCreateTableOneJS.Rd | 5 ++++- 10 files changed, 98 insertions(+), 38 deletions(-)
Title: Dynamically Generates Documentation from a 'Swagger' Compliant
API
Description: A collection of 'HTML', 'JavaScript', and 'CSS' assets that
dynamically generate beautiful documentation from a 'Swagger' compliant API:
<https://swagger.io/specification/>.
Author: Barret Schloerke [cre, aut],
Javier Luraschi [aut],
RStudio [cph],
SmartBear Software [aut, cph]
Maintainer: Barret Schloerke <barret@rstudio.com>
Diff between swagger versions 3.9.2 dated 2018-03-23 and 3.33.0 dated 2020-09-12
swagger-3.33.0/swagger/DESCRIPTION | 17 ++++--- swagger-3.33.0/swagger/MD5 | 43 ++++++++++++------- swagger-3.33.0/swagger/NAMESPACE | 2 swagger-3.33.0/swagger/NEWS.md | 6 +- swagger-3.33.0/swagger/R/paths.R | 57 ++++++++++++++++++++++++-- swagger-3.33.0/swagger/R/plumber.R |only swagger-3.33.0/swagger/R/swagger.R | 2 swagger-3.33.0/swagger/inst/dist3 |only swagger-3.33.0/swagger/man/plumber_docs.Rd |only swagger-3.33.0/swagger/man/swagger-package.Rd | 5 +- swagger-3.33.0/swagger/man/swagger_index.Rd | 5 +- swagger-3.33.0/swagger/man/swagger_path.Rd | 5 +- swagger-3.33.0/swagger/man/swagger_spec.Rd |only swagger-3.33.0/swagger/tests |only swagger-3.33.0/swagger/tools |only swagger-3.9.2/swagger/inst/dist |only 16 files changed, 108 insertions(+), 34 deletions(-)
Title: Provides Tools for Working with General Simplicial Complexes
Description: Provides an interface to a Simplex Tree data structure, which is
a data structure aimed at enabling efficient manipulation of simplicial complexes
of any dimension. The Simplex Tree data structure was originally introduced by
Jean-Daniel Boissonnat and Clément Maria (2014) <doi:10.1007/s00453-014-9887-3>.
Author: Matt Piekenbrock [cre, aut],
Jason Cory Brunson [ctb],
Howard Hinnant [cph]
Maintainer: Matt Piekenbrock <matt.piekenbrock@gmail.com>
Diff between simplextree versions 1.0.0 dated 2020-09-02 and 1.0.1 dated 2020-09-12
DESCRIPTION | 13 ++++++++----- MD5 | 16 ++++++++-------- R/simplex_tree.R | 2 +- inst/include/simplextree.h | 5 +++-- inst/include/simplextree/st.hpp | 21 +++++++++++++-------- inst/include/simplextree/st_filtration.hpp | 2 +- man/plot.simplextree.Rd | 2 +- src/simplextree_module.cpp | 16 +++++++++++----- tests/testthat/test_simplex_tree.R | 2 +- 9 files changed, 47 insertions(+), 32 deletions(-)
Title: A Parallelized General-Purpose Optimization Based on
Marquardt-Levenberg Algorithm
Description: This algorithm provides a numerical solution to the
problem of minimizing (or maximizing) a function. It is particularly suited for complex problems and more efficient than
the Gauss-Newton-like algorithm when starting from points very
far from the final minimum (or maximum). Each iteration is parallelized and convergence relies on a stringent stopping criterion based on the first and second derivatives. See Philipps et al, 2020 <arXiv:2009.03840>.
Author: Viviane Philipps, Cecile Proust-Lima, Melanie Prague, Boris Hejblum, Daniel Commenges, Amadou Diakite
Maintainer: Viviane Philipps <viviane.philipps@u-bordeaux.fr>
Diff between marqLevAlg versions 2.0.2 dated 2020-03-30 and 2.0.4 dated 2020-09-12
DESCRIPTION | 16 +++++++++------- MD5 | 27 +++++++++++++++++---------- R/dataEx.R | 2 +- R/marqLevAlg-package.R | 4 ++++ R/print.marqLevAlg.R | 30 +++++++++++++++++++----------- R/summary.marqLevAlg.R | 28 ++++++++++++++++++++++------ build/partial.rdb |binary build/vignette.rds |only inst |only man/dataEx.Rd | 2 +- man/marqLevAlg-package.Rd | 4 ++++ man/print.marqLevAlg.Rd | 2 +- man/summary.marqLevAlg.Rd | 15 +++++++++++++-- vignettes |only 14 files changed, 91 insertions(+), 39 deletions(-)
Title: Factorization of Sparse Counts Matrices Through Poisson
Likelihood
Description: Creates a low-rank factorization of a sparse counts matrix by maximizing Poisson likelihood with l1/l2 regularization
with all non-negative latent factors (e.g. for recommender systems or topic modeling) (Cortes, (2018) <arXiv:1811.01908>).
Similar to hierarchical Poisson factorization, but follows an optimization-based approach with regularization instead of a
hierarchical structure, and is fit through gradient-based methods instead of variational inference.
Author: David Cortes [aut, cre, cph], Jean-Sebastien Roy [cph], Stephen Nash [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between poismf versions 0.2.4 dated 2020-08-26 and 0.2.5 dated 2020-09-12
poismf-0.2.4/poismf/src/Makevars |only poismf-0.2.5/poismf/DESCRIPTION | 8 ++++---- poismf-0.2.5/poismf/MD5 | 7 +++++-- poismf-0.2.5/poismf/configure |only poismf-0.2.5/poismf/configure.ac |only poismf-0.2.5/poismf/src/Makevars.in |only poismf-0.2.5/poismf/src/Makevars.win |only 7 files changed, 9 insertions(+), 6 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages. These
include e.g. measures like r-squared, intraclass correlation coefficient
(Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>),
root mean squared error or functions to check models for overdispersion,
singularity or zero-inflation and more. Functions apply to a large variety of
regression models, including generalized linear models, mixed effects models
and Bayesian models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between performance versions 0.4.8 dated 2020-07-27 and 0.5.0 dated 2020-09-12
DESCRIPTION | 16 - MD5 | 65 ++-- NAMESPACE | 20 + NEWS.md | 19 + R/check_collinearity.R | 4 R/check_distribution.R | 4 R/check_heteroscedasticity.R | 107 ++++++ R/check_itemscale.R | 2 R/check_normality.R | 2 R/check_outliers.R | 19 - R/check_zeroinflation.R | 10 R/icc.R | 19 - R/model_performance.lavaan.R | 7 R/model_performance.lm.R | 1 R/model_performance.rma.R | 2 R/performance_lrt.R | 2 R/performance_mse.R | 2 R/pp_check.R |only R/print-methods.R | 2 R/r2.R | 20 + R/r2_nakagawa.R | 1 build/partial.rdb |binary inst/CITATION | 4 inst/WORDLIST | 10 man/check_distribution.Rd | 4 man/check_itemscale.Rd | 2 man/check_outliers.Rd | 371 ++++++++++++------------ man/figures/pp_check.png |only man/icc.Rd | 6 man/model_performance.rma.Rd | 2 man/pp_check.Rd |only tests/testthat/test-check_collinearity.R | 7 tests/testthat/test-icc.R | 22 + tests/testthat/test-model_performance-various.R | 1 tests/testthat/test-model_performance.rma.R | 12 35 files changed, 480 insertions(+), 285 deletions(-)
Title: Life Insurance Premium and Reserves Valuation
Description: Methods for valuation of life insurance premiums and reserves (including variable-benefit and fractional coverage) based on "Actuarial Mathematics" by Bowers, H.U. Gerber, J.C. Hickman, D.A. Jones and C.J. Nesbitt (1997, ISBN: 978-0938959465), "Actuarial Mathematics for Life Contingent Risks" by Dickson, David C. M., Hardy, Mary R. and Waters, Howard R (2009) <doi:10.1017/CBO9780511800146> and "Life Contingencies" by Jordan, C. W (1952) <doi:10.1017/S002026810005410X>. It also contains functions for equivalent interest and discount rate calculation, present and future values of annuities, and loan amortization schedule.
Author: Joaquin Auza [aut, cre],
Maria Sol Alvarez [aut]
Maintainer: Joaquin Auza <auzajoaquin@gmail.com>
Diff between DetLifeInsurance versions 0.1.2 dated 2020-07-07 and 0.1.3 dated 2020-09-12
DESCRIPTION | 7 MD5 | 64 ++++--- NAMESPACE | 75 ++++---- R/A..R | 8 R/AD..R | 32 +++ R/Am..R |only R/Av..R | 19 +- R/Avg..R | 32 +++ R/E.R | 5 R/Em.R |only R/JointSurvival.R |only R/Payment_Protection.R | 24 ++ R/Survival.R | 8 R/V_A..R | 8 R/V_AD..R | 12 - R/V_Av..R | 10 - R/V_Avg..R | 10 - R/V_E.R | 6 R/V_Payment_Protection.R |only R/V_a.R | 8 R/V_aD.R | 10 - R/V_av.R | 10 - R/V_avg.R | 10 - R/am.R |only R/qfrac.R | 8 README.md | 18 +- build/vignette.rds |binary inst/doc/HowToDetLifeInsurance.R | 19 +- inst/doc/HowToDetLifeInsurance.Rmd | 36 +++- inst/doc/HowToDetLifeInsurance.html | 318 +++++++++++++++++++++++++----------- man/Am..Rd |only man/Em.Rd |only man/JointSurvival.Rd |only man/Survival.Rd | 1 man/V_Payment_Protection.Rd |only man/am.Rd |only man/qfrac.Rd | 2 vignettes/HowToDetLifeInsurance.Rmd | 36 +++- 38 files changed, 552 insertions(+), 244 deletions(-)
More information about DetLifeInsurance at CRAN
Permanent link
Title: Ternary Plots for Trinomial Regression Models
Description: An implementation of the ternary plot for interpreting regression
coefficients of trinomial regression models, as proposed in Santi, Dickson
and Espa (2019) <doi:10.1080/00031305.2018.1442368>. Ternary plots can be
drawn using either 'ggtern' package (based on 'ggplot2') or 'Ternary'
package (based on standard graphics).
Author: Flavio Santi [cre, aut] (<https://orcid.org/0000-0002-2014-1981>),
Maria Michela Dickson [aut] (<https://orcid.org/0000-0002-4307-0469>),
Giuseppe Espa [aut] (<https://orcid.org/0000-0002-0331-3630>),
Diego Giuliani [aut] (<https://orcid.org/0000-0002-7198-6714>)
Maintainer: Flavio Santi <flavio.santi@univr.it>
Diff between plot3logit versions 2.2.0 dated 2020-07-19 and 3.0.0 dated 2020-09-12
plot3logit-2.2.0/plot3logit/R/P2XB.R |only plot3logit-2.2.0/plot3logit/R/S3-generics.R |only plot3logit-2.2.0/plot3logit/R/XB2P.R |only plot3logit-2.2.0/plot3logit/R/plot3logit-deprecated.R |only plot3logit-2.2.0/plot3logit/R/read_model.R |only plot3logit-2.2.0/plot3logit/R/vdelta.R |only plot3logit-2.2.0/plot3logit/build/plot3logit.pdf |only plot3logit-2.2.0/plot3logit/man/P2XB.Rd |only plot3logit-2.2.0/plot3logit/man/XB2P.Rd |only plot3logit-2.2.0/plot3logit/man/deprecated-functions.Rd |only plot3logit-2.2.0/plot3logit/man/plot3logit-deprecated.Rd |only plot3logit-2.2.0/plot3logit/man/read_model.Rd |only plot3logit-3.0.0/plot3logit/DESCRIPTION | 21 plot3logit-3.0.0/plot3logit/MD5 | 99 +- plot3logit-3.0.0/plot3logit/NAMESPACE | 15 plot3logit-3.0.0/plot3logit/NEWS.md | 41 + plot3logit-3.0.0/plot3logit/R/DeltaB2pc.R | 10 plot3logit-3.0.0/plot3logit/R/DeltaB2vroles.R | 2 plot3logit-3.0.0/plot3logit/R/Ternary.R | 2 plot3logit-3.0.0/plot3logit/R/conf_region.R | 34 plot3logit-3.0.0/plot3logit/R/data.R | 28 plot3logit-3.0.0/plot3logit/R/delta.R |only plot3logit-3.0.0/plot3logit/R/extract3logit.R |only plot3logit-3.0.0/plot3logit/R/field3logit.R | 248 +++--- plot3logit-3.0.0/plot3logit/R/field_common.R | 32 plot3logit-3.0.0/plot3logit/R/ggtern.R | 31 plot3logit-3.0.0/plot3logit/R/labels.R |only plot3logit-3.0.0/plot3logit/R/linkfun.R |only plot3logit-3.0.0/plot3logit/R/linkinv.R |only plot3logit-3.0.0/plot3logit/R/multifield3logit.R | 58 - plot3logit-3.0.0/plot3logit/R/plot3logit-package.R | 48 - plot3logit-3.0.0/plot3logit/R/test-aux.R |only plot3logit-3.0.0/plot3logit/R/utils.R | 4 plot3logit-3.0.0/plot3logit/README.md | 17 plot3logit-3.0.0/plot3logit/build/partial.rdb |binary plot3logit-3.0.0/plot3logit/build/vignette.rds |binary plot3logit-3.0.0/plot3logit/inst/REFERENCES.bib | 145 +++- plot3logit-3.0.0/plot3logit/inst/doc/plot3logit-overview.Rmd | 28 plot3logit-3.0.0/plot3logit/inst/doc/plot3logit-overview.html | 357 +++++----- plot3logit-3.0.0/plot3logit/man/USvote2016.Rd | 28 plot3logit-3.0.0/plot3logit/man/add_confregions.Rd | 5 plot3logit-3.0.0/plot3logit/man/add_confregions_field3logit.Rd | 3 plot3logit-3.0.0/plot3logit/man/autoplot.field3logit.Rd | 4 plot3logit-3.0.0/plot3logit/man/extract3logit.Rd |only plot3logit-3.0.0/plot3logit/man/field3logit.Rd | 67 + plot3logit-3.0.0/plot3logit/man/gen_path.Rd | 6 plot3logit-3.0.0/plot3logit/man/get_vdelta.Rd | 12 plot3logit-3.0.0/plot3logit/man/gg3logit.Rd | 12 plot3logit-3.0.0/plot3logit/man/labels.Rd | 10 plot3logit-3.0.0/plot3logit/man/linkfun.Rd |only plot3logit-3.0.0/plot3logit/man/linkinv.Rd |only plot3logit-3.0.0/plot3logit/man/multifield3logit.Rd | 10 plot3logit-3.0.0/plot3logit/man/pc2p0.Rd | 12 plot3logit-3.0.0/plot3logit/man/plot3logit-package.Rd | 47 - plot3logit-3.0.0/plot3logit/man/stat_3logit.Rd | 6 plot3logit-3.0.0/plot3logit/man/stat_conf3logit.Rd | 11 plot3logit-3.0.0/plot3logit/man/stat_field3logit.Rd | 11 plot3logit-3.0.0/plot3logit/tests |only plot3logit-3.0.0/plot3logit/vignettes/plot3logit-overview.Rmd | 28 59 files changed, 862 insertions(+), 630 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci, Silvia Pandolfi, Fulvia Pennoni, Alessio Farcomeni, Alessio Serafini
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.6.1 dated 2020-04-19 and 3.0.0 dated 2020-09-12
DESCRIPTION | 15 +-- MD5 | 90 +++++++++++-------- NAMESPACE | 168 +++++++++++++++++++----------------- R/est_old.R | 34 +++---- R/lk_obs_cont.R | 2 R/lk_obs_latent_cont.R | 2 R/lmbasic.cont.MISS.R | 5 - R/lmbasic.cont.R | 27 ++++- R/lmcovlatent.cont.R | 16 ++- R/lmcovmanifest.R | 2 R/lmest.R | 37 ++++++- R/lmestCont.R | 166 ++++++++++++++++++++++------------- R/lmestContMISS.R | 20 ++-- R/lmestData.R | 12 +- R/lmestMc.R | 8 + R/lmestMixed.R | 8 + R/lmestSearch.R | 21 ++++ R/plot.LMbasic.R |only R/plot.LMbasiccont.R |only R/plot.LMlatent.R |only R/plot.LMlatentcont.R |only R/sq.R | 12 +- R/summary.LMbasic.R | 8 - R/summary.LMlatent.R | 2 build |only data/NLSYlong.rda |only data/PSIDlong.rda |only data/RLMSdat.rda |binary data/RLMSlong.rda |binary data/data_SRHS_long.rda |binary data/data_criminal_sim.rda |binary inst/doc |only man/LMest-package.Rd | 17 +-- man/NLSYlong.Rd |only man/PSIDlong.Rd |only man/RLMSdat.Rd | 2 man/RLMSlong.Rd | 2 man/bootstrap.Rd | 57 +++++++----- man/bootstrap_lm_cov_latent_cont.Rd | 2 man/data_drug.Rd | 4 man/decoding.Rd | 7 + man/lmest.Rd | 140 +++++++++++++++--------------- man/lmestCont.Rd | 50 +++++----- man/lmestDecoding.Rd | 34 ++++--- man/lmestFormula.Rd | 52 ++++++----- man/lmestMc.Rd | 32 +++--- man/lmestMixed.Rd | 10 +- man/lmestSearch.Rd | 2 man/plot.LMest.Rd |only man/se.Rd | 69 +++++++++----- vignettes |only 51 files changed, 665 insertions(+), 470 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 2.0.0 dated 2020-09-04 and 2.0.1 dated 2020-09-12
DESCRIPTION | 11 - MD5 | 14 +- NEWS.md | 4 R/pairwise_comparisons.R | 28 +--- README.md | 118 +++++++++++++-------- man/pairwise_comparisons.Rd | 3 tests/testthat/test-pairwise_comparisons_between.R | 10 - tests/testthat/test-pairwise_comparisons_within.R | 18 --- 8 files changed, 103 insertions(+), 103 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: R Interface for the 'H2O' Scalable Machine Learning Platform
Description: R interface for 'H2O', the scalable open source machine learning
platform that offers parallelized implementations of many supervised and
unsupervised machine learning algorithms such as Generalized Linear
Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests,
Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes,
Generalized Additive Models (GAM), Cox Proportional Hazards, K-Means, PCA,
Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
Author: Erin LeDell [aut, cre],
Navdeep Gill [aut],
Spencer Aiello [aut],
Anqi Fu [aut],
Arno Candel [aut],
Cliff Click [aut],
Tom Kraljevic [aut],
Tomas Nykodym [aut],
Patrick Aboyoun [aut],
Michal Kurka [aut],
Michal Malohlava [aut],
Ludi Rehak [ctb],
Eric Eckstrand [ctb],
Brandon Hill [ctb],
Sebastian Vidrio [ctb],
Surekha Jadhawani [ctb],
Amy Wang [ctb],
Raymond Peck [ctb],
Wendy Wong [ctb],
Jan Gorecki [ctb],
Matt Dowle [ctb],
Yuan Tang [ctb],
Lauren DiPerna [ctb],
H2O.ai [cph, fnd]
Maintainer: Erin LeDell <erin@h2o.ai>
Diff between h2o versions 3.30.0.1 dated 2020-04-09 and 3.30.1.2 dated 2020-09-12
DESCRIPTION | 26 - MD5 | 370 +++++++------- NAMESPACE | 12 R/aggregator.R | 48 + R/automl.R | 45 + R/classes.R | 52 ++ R/communication.R | 4 R/connection.R | 8 R/datasets.R | 4 R/deeplearning.R | 12 R/export.R | 88 +++ R/frame.R | 228 +++++---- R/gam.R | 60 ++ R/gbm.R | 24 R/glm.R | 76 ++- R/glrm.R | 15 R/import.R | 20 R/isolationforest.R | 34 + R/kvstore.R | 54 +- R/logging.R | 2 R/models.R | 596 +++++++++++++++++------- R/naivebayes.R | 17 R/parse.R | 19 R/randomforest.R | 22 R/stackedensemble.R | 122 +++- R/tf-idf.R |only R/w2vutils.R | 10 R/word2vec.R | 10 R/xgboost.R | 30 - inst/branch.txt | 2 inst/buildnum.txt | 2 man/H2OTree-class.Rd | 8 man/aaa.Rd | 2 man/as.h2o.Rd | 10 man/australia.Rd | 6 man/dot-h2o.__ALL_CAPABILITIES.Rd | 4 man/dot-h2o.__CREATE_FRAME.Rd | 4 man/dot-h2o.__DECRYPTION_SETUP.Rd | 4 man/dot-h2o.__DKV.Rd | 4 man/dot-h2o.__FRAMES.Rd | 4 man/dot-h2o.__IMPORT.Rd | 4 man/dot-h2o.__JOBS.Rd | 4 man/dot-h2o.__LOGANDECHO.Rd | 4 man/dot-h2o.__MODELS.Rd | 4 man/dot-h2o.__PARSE_SETUP.Rd | 4 man/dot-h2o.__RAPIDS.Rd | 4 man/dot-h2o.__REST_API_VERSION.Rd | 4 man/dot-h2o.__W2V_SYNONYMS.Rd | 4 man/dot-h2o.perfect_auc.Rd |only man/dot-h2o.primitives.Rd | 4 man/dot-pkg.env.Rd | 4 man/h2o-package.Rd | 15 man/h2o.abs.Rd | 2 man/h2o.acos.Rd | 4 man/h2o.aggregated_frame.Rd | 24 man/h2o.aggregator.Rd | 28 - man/h2o.aic.Rd | 6 man/h2o.anomaly.Rd | 2 man/h2o.any.Rd | 2 man/h2o.asfactor.Rd | 2 man/h2o.asnumeric.Rd | 2 man/h2o.assign.Rd | 2 man/h2o.auc.Rd | 2 man/h2o.aucpr.Rd | 2 man/h2o.automl.Rd | 10 man/h2o.biases.Rd | 8 man/h2o.bottomN.Rd | 10 man/h2o.ceiling.Rd | 4 man/h2o.centers.Rd | 2 man/h2o.coef.Rd | 8 man/h2o.coef_norm.Rd | 8 man/h2o.columns_by_type.Rd | 2 man/h2o.confusionMatrix.Rd | 2 man/h2o.cos.Rd | 2 man/h2o.cosh.Rd | 2 man/h2o.cross_validation_fold_assignment.Rd | 10 man/h2o.cross_validation_holdout_predictions.Rd | 6 man/h2o.cross_validation_models.Rd | 8 man/h2o.cross_validation_predictions.Rd | 8 man/h2o.cummax.Rd | 2 man/h2o.cummin.Rd | 2 man/h2o.cumprod.Rd | 2 man/h2o.dct.Rd | 12 man/h2o.deeplearning.Rd | 4 man/h2o.diff.Rd | 8 man/h2o.distance.Rd | 2 man/h2o.drop_duplicates.Rd |only man/h2o.exp.Rd | 2 man/h2o.findSynonyms.Rd | 10 man/h2o.find_row_by_threshold.Rd | 8 man/h2o.find_threshold_by_max_metric.Rd | 8 man/h2o.floor.Rd | 2 man/h2o.gainsLift.Rd | 10 man/h2o.gam.Rd | 39 + man/h2o.gbm.Rd | 14 man/h2o.genericModel.Rd | 4 man/h2o.getFrame.Rd | 2 man/h2o.get_automl.Rd | 12 man/h2o.get_leaderboard.Rd | 13 man/h2o.giniCoef.Rd | 2 man/h2o.glm.Rd | 53 +- man/h2o.glrm.Rd | 8 man/h2o.grep.Rd | 2 man/h2o.head.Rd | 2 man/h2o.hit_ratio_table.Rd | 6 man/h2o.ifelse.Rd | 2 man/h2o.importFile.Rd | 13 man/h2o.import_mojo.Rd | 5 man/h2o.init.Rd | 2 man/h2o.insertMissingValues.Rd | 6 man/h2o.interaction.Rd | 22 man/h2o.isax.Rd | 2 man/h2o.ischaracter.Rd | 2 man/h2o.isfactor.Rd | 2 man/h2o.isnumeric.Rd | 2 man/h2o.isolationForest.Rd | 24 man/h2o.kmeans.Rd | 4 man/h2o.kolmogorov_smirnov.Rd |only man/h2o.loadGrid.Rd | 4 man/h2o.loadModel.Rd | 2 man/h2o.log.Rd | 2 man/h2o.log10.Rd | 2 man/h2o.log1p.Rd | 2 man/h2o.log2.Rd | 2 man/h2o.logloss.Rd | 8 man/h2o.make_metrics.Rd | 12 man/h2o.max.Rd | 2 man/h2o.mean.Rd | 4 man/h2o.mean_per_class_error.Rd | 2 man/h2o.min.Rd | 2 man/h2o.mse.Rd | 2 man/h2o.naiveBayes.Rd | 5 man/h2o.ncol.Rd | 2 man/h2o.no_progress.Rd | 2 man/h2o.null_deviance.Rd | 4 man/h2o.null_dof.Rd | 4 man/h2o.num_iterations.Rd | 4 man/h2o.parseRaw.Rd | 5 man/h2o.parseSetup.Rd | 5 man/h2o.partialPlot.Rd | 18 man/h2o.performance.Rd | 2 man/h2o.pivot.Rd | 6 man/h2o.quantile.Rd | 2 man/h2o.randomForest.Rd | 14 man/h2o.rapids.Rd |only man/h2o.rbind.Rd | 2 man/h2o.reset_threshold.Rd |only man/h2o.residual_deviance.Rd | 4 man/h2o.residual_dof.Rd | 4 man/h2o.rm.Rd | 6 man/h2o.rmse.Rd | 2 man/h2o.round.Rd | 2 man/h2o.saveGrid.Rd | 10 man/h2o.saveModel.Rd | 2 man/h2o.saveModelDetails.Rd | 2 man/h2o.saveMojo.Rd | 4 man/h2o.save_mojo.Rd |only man/h2o.save_to_hive.Rd |only man/h2o.scoreHistory.Rd | 8 man/h2o.scoreHistoryGAM.Rd |only man/h2o.sdev.Rd | 2 man/h2o.setLevels.Rd | 4 man/h2o.show_progress.Rd | 2 man/h2o.signif.Rd | 2 man/h2o.sin.Rd | 2 man/h2o.sqrt.Rd | 2 man/h2o.stackedEnsemble.Rd | 21 man/h2o.std_coef_plot.Rd | 4 man/h2o.strsplit.Rd | 2 man/h2o.summary.Rd | 4 man/h2o.tan.Rd | 2 man/h2o.tanh.Rd | 2 man/h2o.tf_idf.Rd |only man/h2o.trunc.Rd | 2 man/h2o.unique.Rd | 4 man/h2o.upload_mojo.Rd | 4 man/h2o.var.Rd | 2 man/h2o.varimp.Rd | 2 man/h2o.varimp_plot.Rd | 2 man/h2o.weights.Rd | 8 man/h2o.which_max.Rd | 6 man/h2o.which_min.Rd | 2 man/h2o.word2vec.Rd | 10 man/h2o.xgboost.Rd | 18 man/housevotes.Rd | 4 man/iris.Rd | 4 man/plot.H2OModel.Rd | 10 man/predict_contributions.H2OModel.Rd | 2 man/prostate.Rd | 4 man/show-H2OAutoML-method.Rd |only man/summary-H2OAutoML-method.Rd |only man/walking.Rd | 6 192 files changed, 1929 insertions(+), 971 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting the Generalized Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The models use a distributional regression approach where all the parameters of the conditional distribution of the response variable are modelled using explanatory variables.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 5.1-7 dated 2020-07-13 and 5.2-0 dated 2020-09-12
gamlss-5.1-7/gamlss/R/gamlss.R |only gamlss-5.1-7/gamlss/inst/doc/gamlss-manual.pdf |only gamlss-5.2-0/gamlss/DESCRIPTION | 10 - gamlss-5.2-0/gamlss/MD5 | 167 ++++++++++++------------- gamlss-5.2-0/gamlss/R/centile-pred.R | 15 +- gamlss-5.2-0/gamlss/R/centilesFan.R | 4 gamlss-5.2-0/gamlss/R/centilesPlot.R | 10 - gamlss-5.2-0/gamlss/R/centilescom.R | 4 gamlss-5.2-0/gamlss/R/extra.R | 120 +++++++++++------ gamlss-5.2-0/gamlss/R/gamlss-5.R |only gamlss-5.2-0/gamlss/R/gamlssML.R | 11 + gamlss-5.2-0/gamlss/R/lms.R | 9 - gamlss-5.2-0/gamlss/R/wp.R | 2 gamlss-5.2-0/gamlss/build/partial.rdb |binary gamlss-5.2-0/gamlss/inst/doc/NEWS.txt | 19 ++ gamlss-5.2-0/gamlss/man/DevianceIncr.Rd | 11 + gamlss-5.2-0/gamlss/man/IC.Rd | 17 +- gamlss-5.2-0/gamlss/man/LR.test.Rd | 10 + gamlss-5.2-0/gamlss/man/Q.stats.Rd | 10 + gamlss-5.2-0/gamlss/man/Rsq.Rd | 11 + gamlss-5.2-0/gamlss/man/VC.test.Rd | 14 ++ gamlss-5.2-0/gamlss/man/acfResid.Rd | 11 + gamlss-5.2-0/gamlss/man/additive.fit.Rd | 10 + gamlss-5.2-0/gamlss/man/bfp.Rd | 12 + gamlss-5.2-0/gamlss/man/calibration.Rd | 18 +- gamlss-5.2-0/gamlss/man/centiles.Rd | 10 + gamlss-5.2-0/gamlss/man/centiles.com.Rd | 11 + gamlss-5.2-0/gamlss/man/centiles.pred.Rd | 13 + gamlss-5.2-0/gamlss/man/centiles.split.Rd | 10 + gamlss-5.2-0/gamlss/man/coef.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/cs.Rd | 10 + gamlss-5.2-0/gamlss/man/deviance.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/dtop.Rd | 14 +- gamlss-5.2-0/gamlss/man/edf.Rd | 10 + gamlss-5.2-0/gamlss/man/findhyper.Rd | 10 + gamlss-5.2-0/gamlss/man/fitDist.Rd | 10 + gamlss-5.2-0/gamlss/man/fitted.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/fittedPlot.Rd | 10 + gamlss-5.2-0/gamlss/man/formula.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlss-package.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlss.Rd | 15 +- gamlss-5.2-0/gamlss/man/gamlss.control.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlss.fp.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlss.ps.Rd | 15 +- gamlss-5.2-0/gamlss/man/gamlss.random.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlss.scope.Rd | 10 + gamlss-5.2-0/gamlss/man/gamlssML.Rd | 15 +- gamlss-5.2-0/gamlss/man/gamlssVGD.Rd | 11 + gamlss-5.2-0/gamlss/man/gen.likelihood.Rd | 9 - gamlss-5.2-0/gamlss/man/getPEF.Rd | 10 + gamlss-5.2-0/gamlss/man/getQuantile.Rd | 10 + gamlss-5.2-0/gamlss/man/getSmo.Rd | 11 + gamlss-5.2-0/gamlss/man/glim.control.Rd | 10 + gamlss-5.2-0/gamlss/man/histDist.Rd | 10 + gamlss-5.2-0/gamlss/man/histSmo.Rd | 10 + gamlss-5.2-0/gamlss/man/lms.Rd | 12 + gamlss-5.2-0/gamlss/man/lo.Rd | 10 + gamlss-5.2-0/gamlss/man/loglogSurv.Rd | 12 + gamlss-5.2-0/gamlss/man/lpred.Rd | 10 + gamlss-5.2-0/gamlss/man/model.frame.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/numeric.deriv.Rd | 10 + gamlss-5.2-0/gamlss/man/par.plot.Rd | 10 + gamlss-5.2-0/gamlss/man/pcat.Rd | 11 + gamlss-5.2-0/gamlss/man/pdf.plot.Rd | 10 + gamlss-5.2-0/gamlss/man/plot.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/plot.histSmo.Rd | 10 + gamlss-5.2-0/gamlss/man/plot2way.Rd | 10 + gamlss-5.2-0/gamlss/man/polyS.Rd | 9 - gamlss-5.2-0/gamlss/man/predict.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/print.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/prof.dev.Rd | 10 + gamlss-5.2-0/gamlss/man/prof.term.Rd | 9 - gamlss-5.2-0/gamlss/man/ps.Rd | 10 + gamlss-5.2-0/gamlss/man/quantSheets.Rd | 11 + gamlss-5.2-0/gamlss/man/random.Rd | 10 + gamlss-5.2-0/gamlss/man/refit.Rd | 10 + gamlss-5.2-0/gamlss/man/residuals.gamlss.Rd | 12 + gamlss-5.2-0/gamlss/man/ri.Rd | 10 + gamlss-5.2-0/gamlss/man/rqres.plot.Rd | 11 + gamlss-5.2-0/gamlss/man/rvcov.Rd | 10 + gamlss-5.2-0/gamlss/man/stepGAIC.Rd | 11 + gamlss-5.2-0/gamlss/man/summary.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/term.plot.Rd | 10 + gamlss-5.2-0/gamlss/man/update.gamlss.Rd | 10 + gamlss-5.2-0/gamlss/man/wp.Rd | 13 + gamlss-5.2-0/gamlss/man/z.scores.Rd | 10 + 86 files changed, 758 insertions(+), 382 deletions(-)
Title: Baseline Correction of Spectra
Description: Collection of baseline correction algorithms, along with a framework and a Tcl/Tk enabled GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
Author: Kristian Hovde Liland [aut, cre],
Bjørn-Helge Mevik [aut],
Roberto Canteri [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between baseline versions 1.3-0 dated 2020-05-11 and 1.3-1 dated 2020-09-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ R/baselineGUI2.R | 39 ++++++++++++++++++++++++++------------- 4 files changed, 37 insertions(+), 20 deletions(-)
Title: Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Description: Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
Author: Adrian Dragulescu [aut],
Cole Arendt [aut, cre]
Maintainer: Cole Arendt <cole.arendt@outlook.com>
Diff between xlsx versions 0.6.3 dated 2020-02-28 and 0.6.4.2 dated 2020-09-12
DESCRIPTION | 8 - MD5 | 62 +++++------ NEWS | 6 + R/DataFormat.R | 2 R/NamedRanges.R | 2 R/Row.R | 4 R/Workbook.R | 5 R/addDataFrame.R | 4 R/autoRefresh.R | 76 +++++++------- R/otherEffects.R | 2 R/utilities.R | 9 - R/write.xlsx.R | 2 R/xlsx-package.R | 6 - README.md | 10 - build/vignette.rds |binary inst/doc/excel_report.Rmd | 2 inst/doc/excel_report.html | 14 +- inst/doc/xlsx.Rmd | 2 inst/doc/xlsx.html | 14 +- inst/tests/lib_tests_xlsx.R | 196 ++++++++++++++++++------------------- man/NamedRanges.Rd | 2 man/POI_constants.Rd | 14 ++ man/addDataFrame.Rd | 2 man/addHyperlink.Rd | 2 man/autoRefresh.Rd | 2 man/write.xlsx.Rd | 2 man/xlsx-package.Rd | 6 - tests/testthat/helper-wrapper.R | 132 ++++++++++++------------ tests/testthat/test-addDataFrame.R | 52 ++++++--- tests/testthat/test-utils.R | 1 vignettes/excel_report.Rmd | 2 vignettes/xlsx.Rmd | 2 32 files changed, 335 insertions(+), 310 deletions(-)
Title: Tidy Wrapper for 'BayesFactor' Package
Description: Provides helper functions that make it easy to run
'BayesFactor' package tests on a data which is in a tidy format.
Additionally, it provides a more consistent syntax and by default
returns a dataframe with rich details. These functions can also return
expressions containing results from Bayes Factor tests that can then
be displayed on custom plots.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between tidyBF versions 0.2.1 dated 2020-06-19 and 0.3.0 dated 2020-09-12
tidyBF-0.2.1/tidyBF/tests/testthat/test-bf_expr.R |only tidyBF-0.3.0/tidyBF/DESCRIPTION | 10 tidyBF-0.3.0/tidyBF/MD5 | 54 - tidyBF-0.3.0/tidyBF/NAMESPACE | 1 tidyBF-0.3.0/tidyBF/NEWS.md | 16 tidyBF-0.3.0/tidyBF/R/bf_contingency_tab.R | 16 tidyBF-0.3.0/tidyBF/R/bf_corr_test.R | 29 tidyBF-0.3.0/tidyBF/R/bf_meta.R | 6 tidyBF-0.3.0/tidyBF/R/bf_oneway_anova.R | 54 - tidyBF-0.3.0/tidyBF/R/bf_ttest.R | 15 tidyBF-0.3.0/tidyBF/R/helpers_bf_tests.R | 180 +++- tidyBF-0.3.0/tidyBF/README.md | 398 +++++++---- tidyBF-0.3.0/tidyBF/man/bf_contingency_tab.Rd | 258 +++---- tidyBF-0.3.0/tidyBF/man/bf_corr_test.Rd | 155 ++-- tidyBF-0.3.0/tidyBF/man/bf_expr.Rd | 142 ++- tidyBF-0.3.0/tidyBF/man/bf_extractor.Rd | 69 - tidyBF-0.3.0/tidyBF/man/bf_meta.Rd | 246 +++--- tidyBF-0.3.0/tidyBF/man/bf_oneway_anova.Rd | 165 ++-- tidyBF-0.3.0/tidyBF/man/bf_ttest.Rd | 244 +++--- tidyBF-0.3.0/tidyBF/man/figures/README-expr_plot-1.png |binary tidyBF-0.3.0/tidyBF/man/figures/README-expr_plot2-1.png |binary tidyBF-0.3.0/tidyBF/man/figures/README-expr_plot3-1.png |only tidyBF-0.3.0/tidyBF/man/figures/README-expr_plot4-1.png |only tidyBF-0.3.0/tidyBF/man/figures/README-expr_plot5-1.png |only tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_contingency_tab.R | 4 tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_corr_test.R | 34 tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_extractor.R | 10 tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_meta.R | 6 tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_oneway_anova.R | 66 - tidyBF-0.3.0/tidyBF/tests/testthat/test-bf_ttest.R | 34 30 files changed, 1204 insertions(+), 1008 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system (DES) to
implement a complete data-to-decisions, reproducible workflow.
The core DES components facilitate modularity, and easily enable the user
to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the DES project.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.core versions 1.0.2 dated 2020-08-28 and 1.0.3 dated 2020-09-12
DESCRIPTION | 16 +- MD5 | 18 +-- NEWS.md | 14 ++ R/simList-accessors.R | 4 inst/doc/i-introduction.html | 2 inst/doc/ii-modules.html | 18 +-- inst/doc/iii-cache.html | 214 +++++++++++++++++++------------------- inst/doc/iv-advanced.html | 2 man/Plot.Rd | 12 +- man/simList-accessors-metadata.Rd | 4 10 files changed, 161 insertions(+), 143 deletions(-)
Title: Easily Create Pretty Popup Messages (Modals) in 'Shiny'
Description: Easily create pretty popup messages (modals) in 'Shiny'. A modal can
contain text, images, OK/Cancel buttons, an input to get a response from the
user, and many more customizable options.
Author: Dean Attali [aut, cre] (R interface),
Tristan Edwards [aut] (sweetalert library),
Zhengjia Wang [ctb]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyalert versions 1.1 dated 2020-04-29 and 2.0.0 dated 2020-09-12
DESCRIPTION | 20 +- MD5 | 37 ++-- NAMESPACE | 1 NEWS.md | 19 +- R/shinyalert.R | 196 +++++++++++++++++-------- R/useShinyalert.R | 5 README.md | 145 +++++++++--------- build/vignette.rds |binary inst/doc/shinyalert.Rmd | 77 +++++---- inst/doc/shinyalert.html | 105 +++++++------ inst/examples/demo/server.R | 6 inst/examples/demo/ui.R | 23 +- inst/img/shinyalert-plot.gif |only inst/www/css |only inst/www/shared/swalservice/swalservice.js | 7 inst/www/shared/swalservice/swalservice.min.js | 2 inst/www/srcjs/shinyalert.js | 83 ++++++++-- man/closeAlert.Rd |only man/shinyalert.Rd | 138 +++++++++++------ man/useShinyalert.Rd | 88 +++++------ vignettes/shinyalert.Rmd | 77 +++++---- 21 files changed, 630 insertions(+), 399 deletions(-)
Title: Implementations of Semi-Supervised Learning Approaches for
Classification
Description: A collection of implementations of semi-supervised classifiers
and methods to evaluate their performance. The package includes implementations
of, among others, Implicitly Constrained Learning, Moment Constrained Learning,
the Transductive SVM, Manifold regularization, Maximum Contrastive Pessimistic
Likelihood estimation, S4VM and WellSVM.
Author: Jesse Krijthe [aut, cre]
Maintainer: Jesse Krijthe <jkrijthe@gmail.com>
Diff between RSSL versions 0.9.1 dated 2020-02-04 and 0.9.2 dated 2020-09-12
DESCRIPTION | 13 +- MD5 | 120 +++++++++++++-------------- R/WellSVM.R | 2 README.md | 31 ++++-- inst/CITATION | 19 ++-- man/CrossValidationSSL.Rd | 13 +- man/EMLeastSquaresClassifier.Rd | 49 ++++++----- man/EMLinearDiscriminantClassifier.Rd | 49 ++++++----- man/EMNearestMeanClassifier.Rd | 3 man/GRFClassifier.Rd | 53 ++++++----- man/ICLeastSquaresClassifier.Rd | 56 ++++++------ man/ICLinearDiscriminantClassifier.Rd | 49 ++++++----- man/KernelICLeastSquaresClassifier.Rd | 6 - man/KernelLeastSquaresClassifier.Rd | 49 ++++++----- man/LaplacianKernelLeastSquaresClassifier.Rd | 49 ++++++----- man/LaplacianSVM.Rd | 49 ++++++----- man/LearningCurveSSL.Rd | 31 +++--- man/LeastSquaresClassifier.Rd | 52 ++++++----- man/LinearDiscriminantClassifier.Rd | 49 ++++++----- man/LinearSVM.Rd | 50 ++++++----- man/LinearTSVM.Rd | 54 ++++++------ man/LogisticLossClassifier.Rd | 53 ++++++----- man/LogisticRegression.Rd | 49 ++++++----- man/LogisticRegressionFast.Rd | 4 man/MCLinearDiscriminantClassifier.Rd | 49 ++++++----- man/MCNearestMeanClassifier.Rd | 49 ++++++----- man/MCPLDA.Rd | 49 ++++++----- man/MajorityClassClassifier.Rd | 49 ++++++----- man/NearestMeanClassifier.Rd | 52 ++++++----- man/QuadraticDiscriminantClassifier.Rd | 49 ++++++----- man/RSSL.Rd | 3 man/S4VM.Rd | 50 ++++++----- man/SSLDataFrameToMatrices.Rd | 16 ++- man/SVM.Rd | 50 ++++++----- man/SelfLearning.Rd | 54 ++++++------ man/TSVM.Rd | 54 ++++++------ man/USMLeastSquaresClassifier.Rd | 49 ++++++----- man/WellSVM.Rd | 50 ++++++----- man/add_missinglabels_mar.Rd | 16 ++- man/df_to_matrices.Rd | 16 ++- man/evaluation-measures.Rd | 32 +++---- man/generate2ClassGaussian.Rd | 18 ++-- man/generateABA.Rd | 15 +-- man/generateCrescentMoon.Rd | 15 +-- man/generateFourClusters.Rd | 15 +-- man/generateParallelPlanes.Rd | 15 +-- man/generateSlicedCookie.Rd | 15 +-- man/generateSpirals.Rd | 15 +-- man/generateTwoCircles.Rd | 15 +-- man/loss-methods.Rd | 6 - man/missing_labels.Rd | 16 ++- man/predict-scaleMatrix-method.Rd | 1 man/rssl-formatting.Rd | 1 man/rssl-predict.Rd | 1 man/split_dataset_ssl.Rd | 16 ++- man/split_random.Rd | 17 ++- man/stat_classifier.Rd | 4 man/svmlin.Rd | 53 ++++++----- man/true_labels.Rd | 17 ++- src/utils.cpp | 5 - tools/example-1.png |binary 61 files changed, 1024 insertions(+), 875 deletions(-)
Title: Image Registration Using the 'NiftyReg' Library
Description: Provides an 'R' interface to the 'NiftyReg' image registration tools
<https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration
are supported, in two and three dimensions.
Author: Jon Clayden [cre, aut] (<https://orcid.org/0000-0002-6608-0619>),
Marc Modat [aut],
Benoit Presles [aut],
Thanasis Anthopoulos [aut],
Pankaj Daga [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNiftyReg versions 2.6.8 dated 2020-04-01 and 2.7.0 dated 2020-09-12
DESCRIPTION | 28 ++++++++++----------- MD5 | 33 +++++++++++++------------ NAMESPACE | 3 ++ NEWS | 14 ++++++++++ R/niftyreg.R | 8 ++++++ R/transform.R | 48 +++++++++++++++++++++++++++++++++++++ README.md | 2 - man/buildAffine.Rd | 6 ++-- man/niftyreg.Rd | 11 +++++--- man/niftyreg.linear.Rd | 11 +++----- man/niftyreg.nonlinear.Rd | 4 +-- man/reexports.Rd | 2 - man/saveTransform.Rd |only man/translate.Rd | 12 ++++----- tests/testthat/test-15-affine.R | 16 ++++++------ tests/testthat/test-20-niftyreg.R | 10 +++---- tests/testthat/test-25-transform.R | 26 ++++++++++++-------- tests/testthat/test-30-multireg.R | 6 ++-- 18 files changed, 161 insertions(+), 79 deletions(-)
Title: Interface to 'NetCDF' Datasets
Description: An interface to the 'NetCDF' file formats designed by Unidata
for efficient storage of array-oriented scientific data and descriptions.
Most capabilities of 'NetCDF' version 4 are supported. Optional conversions
of time units are enabled by 'UDUNITS' version 2, also from Unidata.
Author: Pavel Michna [aut],
Milton Woods [aut, cre]
Maintainer: Milton Woods <miltonjwoods@gmail.com>
Diff between RNetCDF versions 2.3-1 dated 2020-05-04 and 2.4-2 dated 2020-09-12
DESCRIPTION | 12 - INSTALL | 4 LICENSE | 2 MD5 | 106 ++++----- NEWS | 10 R/RNetCDF.R | 45 +++- configure | 37 ++- configure.ac | 9 demo |only man/00RNetCDF.Rd | 7 man/att.copy.nc.Rd | 2 man/att.delete.nc.Rd | 2 man/att.get.nc.Rd | 2 man/att.inq.nc.Rd | 2 man/att.put.nc.Rd | 2 man/att.rename.nc.Rd | 2 man/close.nc.Rd | 2 man/create.nc.Rd | 14 - man/dim.def.nc.Rd | 2 man/dim.inq.nc.Rd | 2 man/dim.rename.nc.Rd | 2 man/file.inq.nc.Rd | 4 man/grp.def.nc.Rd | 2 man/grp.inq.nc.Rd | 2 man/grp.rename.nc.Rd | 2 man/open.nc.Rd | 9 man/print.nc.Rd | 2 man/read.nc.Rd | 2 man/sync.nc.Rd | 2 man/type.def.nc.Rd | 2 man/type.inq.nc.Rd | 2 man/utcal.nc.Rd | 4 man/utinit.nc.Rd | 2 man/utinvcal.nc.Rd | 2 man/var.def.nc.Rd | 2 man/var.get.nc.Rd | 4 man/var.inq.nc.Rd | 2 man/var.par.nc.Rd |only man/var.put.nc.Rd | 4 man/var.rename.nc.Rd | 2 src/RNetCDF.h | 13 - src/attribute.c | 4 src/common.c | 4 src/common.h | 4 src/convert.c | 566 +++++++++++++++++++++++++++++++-------------------- src/convert.h | 4 src/dataset.c | 87 ++++++- src/dimension.c | 4 src/group.c | 4 src/init.c | 9 src/type.c | 4 src/udunits.c | 4 src/variable.c | 121 ++++++++-- tests/RNetCDF-test.R | 482 +++++++++++++++++++++++++++++++++++++------ 54 files changed, 1165 insertions(+), 462 deletions(-)
Title: An R Interface to the 'Tiingo' Stock Price API
Description: Functionality to download stock prices,
cryptocurrency data, and more from the 'Tiingo' API
<https://api.tiingo.com/>.
Author: Davis Vaughan [aut, cre],
Matt Dancho [aut]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between riingo versions 0.3.0 dated 2020-07-23 and 0.3.1 dated 2020-09-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/url_constructor.R | 2 +- tests/testthat/test-latest.R | 5 +++-- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. Also provided
are functions for making inferences about the extremal index, using
the K-gaps model of Suveges and Davison (2010) <doi:10.1214/09-AOAS292>.
Also provided are d,p,q,r functions for the Generalised Extreme Value
('GEV') and Generalised Pareto ('GP') distributions that deal
appropriately with cases where the shape parameter is very close to zero.
Author: Paul J. Northrop [aut, cre, cph],
Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.3.8 dated 2020-08-31 and 1.3.9 dated 2020-09-12
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 6 + inst/doc/revdbayes-a-vignette.html | 28 ++++- inst/doc/revdbayes-b-using-rcpp-vignette.html | 54 ++++++---- inst/doc/revdbayes-c-predictive-vignette.html | 20 +++ inst/doc/revdbayes-d-kgaps-vignette.html | 20 +++ tests/testthat/test-bingp.R | 76 +++++++------- tests/testthat/test-gev.R | 138 +++++++++++++------------- tests/testthat/test-gp.R | 138 +++++++++++++------------- 10 files changed, 288 insertions(+), 218 deletions(-)
Title: Datasets to Align Financial Markets with Climate Goals
Description: These datasets support the implementation in R of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
assets and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut, dtc] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.data versions 0.1.2 dated 2020-08-04 and 0.1.3 dated 2020-09-12
DESCRIPTION | 10 +++---- LICENSE |only MD5 | 30 ++++++++++++---------- NEWS.md | 9 ++++++ R/utils.R | 15 ++++++----- README.md | 15 +++++++++++ data/ald_demo.rda |binary data/co2_intensity_scenario_demo.rda |binary data/data_dictionary.rda |binary inst/WORDLIST | 11 +++----- man/co2_intensity_scenario_demo.Rd | 2 - man/sic_classification.Rd | 2 - tests/testthat/ref-ald_demo |binary tests/testthat/ref-co2_intensity_scenario_demo |binary tests/testthat/ref-data_dictionary |binary tests/testthat/test-data_dictionary.R | 33 +++++++++++++++++++++++++ tests/testthat/test-utils.R |only 17 files changed, 93 insertions(+), 34 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Description: For one-way layout experiments the one-way ANOVA can
be performed as an omnibus test. All-pairs multiple comparisons
tests (Tukey-Kramer test, Scheffe test, LSD-test)
and many-to-one tests (Dunnett test) for normally distributed
residuals and equal within variance are available. Furthermore,
all-pairs tests (Games-Howell test, Tamhane's T2 test,
Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one
(Tamhane-Dunnett Test) for normally distributed residuals
and heterogeneous variances are provided. Van der Waerden's normal
scores test for omnibus, all-pairs and many-to-one tests is
provided for non-normally distributed residuals and homogeneous
variances. The Kruskal-Wallis, BWS and Anderson-Darling
omnibus test and all-pairs tests
(Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow-
Fligner test) as well as many-to-one (Nemenyi test, Dunn test,
U-test) are given for the analysis of variance by ranks.
Non-parametric trend tests (Jonckheere test, Cuzick test,
Johnson-Mehrotra test, Spearman test) are included.
In addition, a Friedman-test for one-way ANOVA with repeated
measures on ranks (CRBD) and Skillings-Mack test for unbalanced
CRBD is provided with consequent all-pairs tests (Nemenyi test,
Siegel test, Miller test, Conover test, Exact test)
and many-to-one tests (Nemenyi test, Demsar test, Exact test).
A trend can be tested with Pages's test. Durbin's test
for a two-way balanced incomplete block design (BIBD) is given
in this package as well as Gore's test for CRBD with multiple
observations per cell is given. Outlier tests, Mandel's k- and
h statistic as well as functions for Type I error and Power
analysis as well as generic summary, print and plot methods
are provided.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMRplus versions 1.4.4 dated 2020-03-01 and 1.5.0 dated 2020-09-12
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PMCMRplus-1.5.0/PMCMRplus/man/dunnettT3Test.Rd | 25 - PMCMRplus-1.5.0/PMCMRplus/man/dunnettTest.Rd | 11 PMCMRplus-1.5.0/PMCMRplus/man/durbinAllPairsTest.Rd | 1 PMCMRplus-1.5.0/PMCMRplus/man/durbinTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/frdAllPairsConoverTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdAllPairsExactTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdAllPairsMillerTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdAllPairsNemenyiTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdAllPairsSiegelTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdManyOneDemsarTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdManyOneExactTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/frdManyOneNemenyiTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/gamesHowellTest.Rd | 25 - PMCMRplus-1.5.0/PMCMRplus/man/grubbsTest.Rd | 1 PMCMRplus-1.5.0/PMCMRplus/man/hartleyTest.Rd | 1 PMCMRplus-1.5.0/PMCMRplus/man/johnsonTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/jonckheereTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/kruskalTest.Rd | 2 PMCMRplus-1.5.0/PMCMRplus/man/kwAllPairsConoverTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/kwAllPairsDunnTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/kwAllPairsNemenyiTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/kwManyOneConoverTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/kwManyOneDunnTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/kwManyOneNdwTest.Rd | 4 PMCMRplus-1.5.0/PMCMRplus/man/leTest.Rd | 3 PMCMRplus-1.5.0/PMCMRplus/man/lsdTest.Rd | 26 - 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Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package.
'pkgdown' converts your documentation, vignettes, 'README', and more to
'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 1.6.0 dated 2020-09-07 and 1.6.1 dated 2020-09-12
DESCRIPTION | 6 - MD5 | 19 ++-- NEWS.md | 5 + R/init.R | 41 +++++----- build/pkgdown.pdf |binary tests/testthat/assets/reference-fail/docs/reference/index.html | 2 tests/testthat/assets/version-formatting/docs/404.html | 2 tests/testthat/assets/version-formatting/docs/index.html | 2 tests/testthat/assets/version-formatting/docs/pkgdown.yml | 6 - tests/testthat/test-init-meta.txt |only tests/testthat/test-init.R | 16 +++ 11 files changed, 64 insertions(+), 35 deletions(-)
Title: Tools for Plant Ecophysiology & Modeling
Description: Contains modeling and analytical tools for plant ecophysiology.
MODELING: Simulate C3 photosynthesis using the Farquhar, von Caemmerer,
Berry (1980) <doi:10.1007/BF00386231> model as described in Buckley and
Diaz-Espejo (2015) <doi:10.1111/pce.12459>. It uses units to ensure that
parameters are properly specified and transformed before calculations.
Temperature response functions get automatically "baked" into all
parameters based on leaf temperature following Bernacchi et al. (2002)
<doi:10.1104/pp.008250>. The package includes boundary layer, cuticular,
stomatal, and mesophyll conductances to CO2, which each can vary on the
upper and lower portions of the leaf. Use straightforward functions to
simulate photosynthesis over environmental gradients such as Photosynthetic
Photon Flux Density (PPFD) and leaf temperature, or over trait gradients
such as CO2 conductance or photochemistry.
ANALYTICAL TOOLS: Fit ACi (Farquhar et al. 1980 <doi:10.1007/BF00386231>)
and AQ curves (Marshall & Biscoe 1980 <doi:10.1093/jxb/31.1.29>),
temperature responses (Heskel et al. 2016 <doi:10.1073/pnas.1520282113>;
Kruse et al. 2008 <doi:10.1111/j.1365-3040.2008.01809.x>, Medlyn et al.
2002 <doi:10.1046/j.1365-3040.2002.00891.x>, Hobbs et al. 2013
<doi:10.1021/cb4005029>), respiration in the light (Kok 1956
<doi:10.1016/0006-3002(56)90003-8>, Walker & Ort 2015 <doi:10.1111/pce.12562>,
Yin et al. 2009 <doi:10.1111/j.1365-3040.2009.01934.x>, Yin et al. 2011
<doi:10.1093/jxb/err038>), mesophyll conductance (Harley et al. 1992
<doi:10.1104/pp.98.4.1429>), pressure-volume curves (Koide et al. 2000
<doi:10.1007/978-94-009-2221-1_9>, Sack et al. 2003
<doi:10.1046/j.0016-8025.2003.01058.x>, Tyree et al. 1972
<doi:10.1093/jxb/23.1.267>), hydraulic vulnerability curves (Ogle et al. 2009
<doi:10.1111/j.1469-8137.2008.02760.x>, Pammenter et al. 1998
<doi:10.1093/treephys/18.8-9.589>), and tools for running sensitivity
analyses particularly for variables with uncertainty (e.g. g_mc, gamma_star,
R_d).
Author: Joseph Stinziano [aut] (<https://orcid.org/0000-0002-7628-4201>),
Cassaundra Roback [aut],
Demi Gamble [aut],
Bridget Murphy [aut],
Patrick Hudson [aut, dtc],
Chris Muir [aut, cre] (<https://orcid.org/0000-0003-2555-3878>)
Maintainer: Chris Muir <cdmuir@hawaii.edu>
Diff between photosynthesis versions 1.0.2 dated 2020-07-01 and 2.0.0 dated 2020-09-12
DESCRIPTION | 74 +- LICENSE | 4 MD5 | 131 ++- NAMESPACE | 70 + NEWS.md | 10 R/FvCB.R | 141 +-- R/analyze_sensitivity.R |only R/aq_response.R |only R/bake-par.R | 75 +- R/bake.R | 192 ++--- R/check_dependencies.R |only R/compile_data.R |only R/compute_sensitivity.R |only R/conductance.R | 105 +- R/constants.R | 61 - R/enviro-par.R | 61 - R/fit_PV_curve.R |only R/fit_aci_response.R |only R/fit_aq_response.R |only R/fit_g_mc_variableJ.R |only R/fit_gs_model.R |only R/fit_hyrda_vuln_curve.R |only R/fit_many.R |only R/fit_r_light.R |only R/fit_t_response.R |only R/gs_models.R |only R/j_calculations.R |only R/leaf-par.R | 35 R/make_parameters.R | 197 ++--- R/parameter_names.R | 60 - R/photosynthesis-package.R | 12 R/photosynthesis.R | 357 +++++----- R/print_graphs.R |only R/read_licors.R |only R/t_functions.R |only R/utils.R | 70 - build/vignette.rds |binary inst/CITATION | 16 inst/doc/photosynthesis-curve-fitting-sensitivity-analyses.R |only inst/doc/photosynthesis-curve-fitting-sensitivity-analyses.Rmd |only inst/doc/photosynthesis-curve-fitting-sensitivity-analyses.html |only inst/doc/photosynthesis-introduction.html | 4 inst/extdata |only man/A_supply.Rd | 1 man/CO2_conductance.Rd | 13 man/FvCB.Rd | 10 man/J.Rd | 1 man/analyze_sensitivity.Rd |only man/aq_response.Rd |only man/bake.Rd | 39 - man/bake_par.Rd | 3 man/check_dependencies.Rd |only man/compile_data.Rd |only man/compute_sensitivity.Rd |only man/constants.Rd | 3 man/fit_PV_curve.Rd |only man/fit_aci_response.Rd |only man/fit_aq_response.Rd |only man/fit_g_mc_variableJ.Rd |only man/fit_gs_model.Rd |only man/fit_hydra_vuln_curve.Rd |only man/fit_many.Rd |only man/fit_r_light.Rd |only man/fit_t_response.Rd |only man/gs_models.Rd |only man/gw2gc.Rd | 17 man/j_calculations.Rd |only man/leaf_par.Rd | 3 man/make_parameters.Rd | 8 man/parameter_names.Rd | 2 man/photosynthesis-package.Rd | 2 man/photosynthesis.Rd | 23 man/ppm2pa.Rd | 1 man/print_graphs.Rd |only man/read_licors.Rd |only man/t_functions.Rd |only tests/testthat/test-bake.R | 12 tests/testthat/test-constants.R | 61 + tests/testthat/test-fit_PV_curve.R |only tests/testthat/test-fit_aci_response.R |only tests/testthat/test-fit_aq_response.R |only tests/testthat/test-fit_g_mc_variableJ.R |only tests/testthat/test-fit_gs_model.R |only tests/testthat/test-fit_hydra_vuln_curve.R |only tests/testthat/test-fit_many.R |only tests/testthat/test-fit_r_light.R |only tests/testthat/test-fit_t_response.R |only tests/testthat/test-photosynthesis-crossing.R | 34 tests/testthat/test-unitless.R | 40 - vignettes/photosynthesis-curve-fitting-sensitivity-analyses.Rmd |only 90 files changed, 1074 insertions(+), 874 deletions(-)
More information about photosynthesis at CRAN
Permanent link
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>),
Søren Højsgaard [aut],
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.8.2 dated 2020-07-24 and 0.8.5 dated 2020-09-12
parameters-0.8.2/parameters/tests/testthat/test-panelr.R |only parameters-0.8.5/parameters/DESCRIPTION | 26 - parameters-0.8.5/parameters/MD5 | 127 +++--- parameters-0.8.5/parameters/NAMESPACE | 35 + parameters-0.8.5/parameters/NEWS.md | 30 + parameters-0.8.5/parameters/R/bootstrap_model.R | 2 parameters-0.8.5/parameters/R/bootstrap_parameters.R | 2 parameters-0.8.5/parameters/R/check_clusterstructure.R | 2 parameters-0.8.5/parameters/R/check_heterogeneity.R | 4 parameters-0.8.5/parameters/R/check_multimodal.R | 2 parameters-0.8.5/parameters/R/ci.R | 24 + parameters-0.8.5/parameters/R/ci_wald.R | 8 parameters-0.8.5/parameters/R/demean.R | 2 parameters-0.8.5/parameters/R/dof.R | 14 parameters-0.8.5/parameters/R/dof_ml1.R | 9 parameters-0.8.5/parameters/R/extract_parameters.R | 187 +++++----- parameters-0.8.5/parameters/R/factor_analysis.R | 20 - parameters-0.8.5/parameters/R/format_parameters.R | 14 parameters-0.8.5/parameters/R/model_parameters.Mclust.R | 8 parameters-0.8.5/parameters/R/model_parameters.R | 1 parameters-0.8.5/parameters/R/model_parameters.bayesian.R | 127 ++++++ parameters-0.8.5/parameters/R/model_parameters.emmGrid.R | 19 - parameters-0.8.5/parameters/R/model_parameters.lavaan.R | 31 - parameters-0.8.5/parameters/R/model_parameters.lqmm.R |only parameters-0.8.5/parameters/R/model_parameters.mira.R |only parameters-0.8.5/parameters/R/model_parameters.rma.R | 6 parameters-0.8.5/parameters/R/model_parameters_default.R | 18 parameters-0.8.5/parameters/R/p_value.R | 61 +++ parameters-0.8.5/parameters/R/parameters_type.R | 18 parameters-0.8.5/parameters/R/plot.R | 9 parameters-0.8.5/parameters/R/print.parameters_model.R | 31 + parameters-0.8.5/parameters/R/standard_error.R | 59 +++ parameters-0.8.5/parameters/R/standardize_names.R | 4 parameters-0.8.5/parameters/R/utils.R | 7 parameters-0.8.5/parameters/R/utils_cleaners.R | 2 parameters-0.8.5/parameters/README.md | 37 + parameters-0.8.5/parameters/build/partial.rdb |binary parameters-0.8.5/parameters/build/vignette.rds |binary parameters-0.8.5/parameters/inst/CITATION | 25 - parameters-0.8.5/parameters/inst/WORDLIST | 3 parameters-0.8.5/parameters/inst/doc/demean.R | 2 parameters-0.8.5/parameters/inst/doc/demean.Rmd | 4 parameters-0.8.5/parameters/inst/doc/demean.html | 4 parameters-0.8.5/parameters/inst/doc/efa_cfa.R | 20 + parameters-0.8.5/parameters/inst/doc/efa_cfa.Rmd | 26 + parameters-0.8.5/parameters/inst/doc/efa_cfa.html | 36 + parameters-0.8.5/parameters/inst/doc/model_parameters.html | 42 -- parameters-0.8.5/parameters/inst/doc/model_parameters_mice.R |only parameters-0.8.5/parameters/inst/doc/model_parameters_mice.Rmd |only parameters-0.8.5/parameters/inst/doc/model_parameters_mice.html |only parameters-0.8.5/parameters/man/bootstrap_model.Rd | 2 parameters-0.8.5/parameters/man/bootstrap_parameters.Rd | 2 parameters-0.8.5/parameters/man/check_clusterstructure.Rd | 2 parameters-0.8.5/parameters/man/check_multimodal.Rd | 2 parameters-0.8.5/parameters/man/factor_analysis.Rd | 20 - parameters-0.8.5/parameters/man/model_parameters.Mclust.Rd | 8 parameters-0.8.5/parameters/man/model_parameters.Rd | 1 parameters-0.8.5/parameters/man/model_parameters.lavaan.Rd | 14 parameters-0.8.5/parameters/man/model_parameters.mira.Rd |only parameters-0.8.5/parameters/man/print.Rd | 5 parameters-0.8.5/parameters/tests/testthat/test-equivalence_test.R | 1 parameters-0.8.5/parameters/tests/testthat/test-glmmTMB-2.R |only parameters-0.8.5/parameters/tests/testthat/test-glmmTMB.R | 2 parameters-0.8.5/parameters/tests/testthat/test-lavaan.R |only parameters-0.8.5/parameters/tests/testthat/test-mira.R |only parameters-0.8.5/parameters/tests/testthat/test-model_parameters_std_mixed.R | 16 parameters-0.8.5/parameters/tests/testthat/test-rstanarm.R | 76 +--- parameters-0.8.5/parameters/vignettes/demean.Rmd | 4 parameters-0.8.5/parameters/vignettes/efa_cfa.Rmd | 26 + parameters-0.8.5/parameters/vignettes/model_parameters_mice.Rmd |only 70 files changed, 946 insertions(+), 343 deletions(-)
Title: Quickly Get Datetime Data Ready for Analysis
Description: Transforms datetime data into a format ready for analysis.
It offers two core functionalities; aggregating data to a higher level interval
(thicken) and imputing records where observations were absent (pad).
Author: Edwin Thoen
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Diff between padr versions 0.5.2 dated 2020-05-12 and 0.5.3 dated 2020-09-12
DESCRIPTION | 8 +-- MD5 | 40 ++++++++-------- build/vignette.rds |binary data/coffee.rda |binary inst/doc/padr.Rmd | 2 inst/doc/padr.html | 91 +++++++++++++++++++------------------- inst/doc/padr_custom.Rmd | 2 inst/doc/padr_custom.html | 12 ++--- inst/doc/padr_implementation.Rmd | 2 inst/doc/padr_implementation.html | 8 +-- man/coffee.Rd | 6 +- man/emergency.Rd | 6 +- man/format_interval.Rd | 11 +++- man/pad.Rd | 11 +++- man/pad_cust.Rd | 3 - man/pad_int.Rd | 3 - man/thicken.Rd | 13 ++++- tests/testthat/test_pad.R | 2 vignettes/padr.Rmd | 2 vignettes/padr_custom.Rmd | 2 vignettes/padr_implementation.Rmd | 2 21 files changed, 124 insertions(+), 102 deletions(-)
Title: MDL Multiresolution Linear Regression Framework
Description: We provide the framework to analyze multiresolution partitions (e.g. country, provinces, subdistrict) where each individual data point belongs to only one partition in each layer (e.g. i belongs to subdistrict A, province P, and country Q). We assume that a partition in a higher layer subsumes lower-layer partitions (e.g. a nation is at the 1st layer subsumes all provinces at the 2nd layer). Given N individuals that have a pair of real values (x,y) that generated from independent variable X and dependent variable Y. Each individual i belongs to one partition per layer. Our goal is to find which partitions at which highest level that all individuals in the these partitions share the same linear model Y=f(X) where f is a linear function. The framework deploys the Minimum Description Length principle (MDL) to infer solutions. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2019) <arXiv:1907.05234>.
Author: Chainarong Amornbunchornvej [aut, cre]
(<https://orcid.org/0000-0003-3131-0370>)
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between MRReg versions 0.1.1 dated 2020-05-12 and 0.1.2 dated 2020-09-12
DESCRIPTION | 12 LICENSE | 4 MD5 | 40 - NAMESPACE | 34 - NEWS.md | 3 R/FindMaxHomoOptimalPartitions.R | 408 +++++++------- R/SimpleSimulation.R | 506 +++++++++--------- R/helperFunctions.R | 212 +++---- R/linearModelTraining.R | 238 ++++---- R/plotOptimalClustersTree.R | 184 +++--- build/vignette.rds |binary inst/CITATION | 26 inst/doc/MDLResFramework_Demo.R | 34 - inst/doc/MDLResFramework_Demo.Rmd | 120 ++-- inst/doc/MDLResFramework_Demo.html | 986 +++++++++++++++++------------------- man/FindMaxHomoOptimalPartitions.Rd | 128 ++-- man/PrintOptimalClustersResult.Rd | 54 - man/SimpleSimulation.Rd | 98 +-- man/linearModelTraining.Rd | 100 +-- man/plotOptimalClustersTree.Rd | 56 +- vignettes/MDLResFramework_Demo.Rmd | 120 ++-- 21 files changed, 1677 insertions(+), 1686 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move versions 4.0.2 dated 2020-06-25 and 4.0.4 dated 2020-09-12
ChangeLog | 4 DESCRIPTION | 10 MD5 | 12 build/vignette.rds |binary inst/doc/browseMovebank.html | 144 ++--- inst/doc/move.html | 1107 ++++++++++++++-------------------------- tests/testthat/test.moveStack.R | 1 7 files changed, 493 insertions(+), 785 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models,
selecting subsets using a genetic algorithm, creating interactive web maps,
accessing color palettes, etc. Used to support packages and scripts written
by researchers at the United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.5.0 dated 2020-07-23 and 0.5.2 dated 2020-09-12
DESCRIPTION | 22 ++++++----- MD5 | 22 ++++++----- NAMESPACE | 1 NEWS.md | 14 ++++++- R/AddWebMapElements.R | 2 - R/CreateWebMap.R | 4 +- R/FindOptimalSubset.R | 2 - R/MakeWordCloud.R |only README.md | 94 +++++++++++++++++++++++++++++++++++++++++++---- man/AddWebMapElements.Rd | 2 - man/CreateWebMap.Rd | 4 +- man/FindOptimalSubset.Rd | 2 - man/MakeWordCloud.Rd |only 13 files changed, 132 insertions(+), 37 deletions(-)
Title: Item Analysis in Rasch Models
Description: Tools to assess model fit and identify misfitting items for Rasch models (RM) and partial credit models (PCM). Included are item fit statistics, item characteristic curves, item-restscore association, conditional likelihood ratio tests, assessment of measurement error, estimates of the reliability and test targeting as described in Christensen et al. (Eds.) (2013, ISBN:978-1-84821-222-0).
Author: Marianne Mueller [aut, cre],
Pedro Henrique Ribeiro Santiago [ctb]
Maintainer: Marianne Mueller <marianne.mueller@math.ethz.ch>
Diff between iarm versions 0.4.1 dated 2020-04-19 and 0.4.2 dated 2020-09-12
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- NEWS.md | 7 +++++++ R/Gamma.R | 37 ++++++++++++++----------------------- R/Plots.R | 18 ++++++++++++------ R/data.R | 1 - man/ICCplot.Rd | 31 +++++++++++++++++++++++-------- man/amts.Rd | 6 ++++-- man/boot_fit.Rd | 7 +++++-- man/desc2.Rd | 9 ++++----- man/item_restscore.Rd | 6 ++++-- man/out_infit.Rd | 7 +++++-- man/partgam_DIF.Rd | 7 +++++-- man/partgam_LD.Rd | 6 ++++-- 14 files changed, 106 insertions(+), 74 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph] (<https://orcid.org/0000-0002-2140-5352>),
George Athanasopoulos [aut],
Christoph Bergmeir [aut] (<https://orcid.org/0000-0002-3665-9021>),
Gabriel Caceres [aut],
Leanne Chhay [aut],
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Fotios Petropoulos [aut] (<https://orcid.org/0000-0003-3039-4955>),
Slava Razbash [aut],
Earo Wang [aut],
Farah Yasmeen [aut] (<https://orcid.org/0000-0002-1479-5401>),
R Core Team [ctb, cph],
Ross Ihaka [ctb, cph],
Daniel Reid [ctb],
David Shaub [ctb],
Yuan Tang [ctb] (<https://orcid.org/0000-0001-5243-233X>),
Zhenyu Zhou [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 8.12 dated 2020-03-31 and 8.13 dated 2020-09-12
DESCRIPTION | 13 - MD5 | 72 ++++---- NAMESPACE | 1 NEWS.md | 10 - R/HoltWintersNew.R | 4 R/arima.R | 17 +- R/attach.R | 2 R/bats.R | 30 ++- R/errors.R | 4 R/forecast.R | 4 R/forecast2.R | 22 +- R/ggplot.R | 50 +++--- R/graph.R | 4 R/lm.R | 14 + R/mforecast.R | 4 R/mstl.R | 25 ++- R/naive.R | 43 ++--- R/newarima2.R | 14 + R/simulate.R | 5 R/unitRoot.R | 356 ++++++++++++++++++++++--------------------- build/vignette.rds |binary inst/CITATION | 4 inst/doc/JSS2008.pdf |binary man/BoxCox.Rd | 2 man/accuracy.Rd | 2 man/autolayer.Rd | 2 man/ndiffs.Rd | 3 man/nsdiffs.Rd | 1 man/ocsb.test.Rd | 1 man/plot.forecast.Rd | 2 man/plot.mforecast.Rd | 2 man/reexports.Rd | 2 man/seasonplot.Rd | 2 man/ses.Rd | 2 man/tsdisplay.Rd | 2 tests/testthat/test-arfima.R | 4 tests/testthat/test-arima.R | 2 37 files changed, 407 insertions(+), 320 deletions(-)
Title: Automated Runs and Evaluations of Ecological Niche Models
Description: Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006) or maxnet (Phillips et al. 2017).
Author: Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Maintainer: Robert Muscarella <bob.muscarella@gmail.com>
Diff between ENMeval versions 0.3.0 dated 2018-08-15 and 0.3.1 dated 2020-09-12
DESCRIPTION | 10 MD5 | 35 - NEWS | 6 R/get.block.R | 8 R/make.args.R | 4 R/tuning.R | 12 README.md | 6 build/vignette.rds |binary inst/doc/ENMeval-vignette.R | 87 +-- inst/doc/ENMeval-vignette.Rmd | 53 +- inst/doc/ENMeval-vignette.html | 941 +++++++++++++++++++++-------------------- man/ENMeval-package.Rd | 6 man/ENMevaluate.Rd | 2 man/enmeval_results.Rd | 2 man/make.args.Rd | 2 man/var.importance.Rd | 2 vignettes/ENMeval-vignette.Rmd | 53 +- vignettes/ENMeval-vignette.md | 38 - vignettes/bvariegatus.rds |only 19 files changed, 651 insertions(+), 616 deletions(-)
Title: Electronic Health Record (EHR) Data Processing and Analysis Tool
Description: Process and analyze Electronic Health Record (EHR) data. The `EHR`
package provides modules to perform diverse medication-related studies using
data from EHR databases. Especially, the package includes modules to perform
pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in
Choi et al. (2020). Additional modules will be added in future. In addition,
this package provides various functions useful to perform Phenome Wide
Association Study (PheWAS) to explore associations between drug exposure and
phenotypes obtained from EHR data (Choi et al., 2018).
Author: Leena Choi [aut, cre],
Cole Beck [aut] (<https://orcid.org/0000-0002-6849-6255>),
Hannah Weeks [aut],
Elizabeth McNeer [aut]
Maintainer: Leena Choi <naturechoi@gmail.com>
Diff between EHR versions 0.1-3 dated 2017-10-20 and 0.3-0 dated 2020-09-12
DESCRIPTION | 46 +++++++---- MD5 | 127 ++++++++++++++++++++++++++++---- NAMESPACE | 40 +++++++--- R/EHR-package.R |only R/Logistf.R | 71 ++++++++++++++++- R/addLastDose.R |only R/analysisPheWAS.R | 68 +++++++++++++++++ R/buildDose.R |only R/collapseDose.R |only R/dataTransformation.R |only R/dd.R |only R/dd.baseline.R |only R/dd.baseline.small.R |only R/dd.small.R |only R/extractMed.R |only R/lamMetadata.R |only R/lamParseOutput.R |only R/makeDose.R |only R/parseClamp.R |only R/parseMedExtractR.R |only R/parseMedex.R |only R/parseMedxn.R |only R/processLastDose.R |only R/stdzDose.R |only R/stdzDuration.R |only R/stdzFreq.R |only R/stdzRoute.R |only R/stdzStrength.R |only R/tacLab.R |only R/tacMetadata.R |only R/tacParseOutput.R |only R/utilsBuild.R |only R/utilsCollapse.R |only R/utilsExtractMed.R |only R/utilsLastDose.R |only R/utilsParse.R |only R/zeroOneTable.R | 33 ++++++++ build |only data/dataPheWAS.RData |binary data/dataPheWASsmall.RData |binary data/lam_metadata.RData |only data/lam_mxr_parsed.RData |only data/tac_lab.RData |only data/tac_metadata.RData |only data/tac_mxr_parsed.RData |only inst |only man/EHR-package.Rd | 85 ++++++++++++++------- man/Logistf.Rd | 178 ++++++++++++++++++++++----------------------- man/addLastDose.Rd |only man/analysisPheWAS.Rd | 97 ++++++++++++------------ man/build-internal.Rd |only man/buildDose.Rd |only man/collapse-internal.Rd |only man/collapseDose.Rd |only man/dataTransformation.Rd |only man/dd.Rd | 8 +- man/dd.baseline.Rd | 8 +- man/dd.baseline.small.Rd | 12 ++- man/dd.small.Rd | 11 ++ man/extractMed-internal.Rd |only man/extractMed.Rd |only man/freqNum.Rd |only man/lam_metadata.Rd |only man/lam_mxr_parsed.Rd |only man/lastdose-internal.Rd |only man/makeDose.Rd |only man/parse-internal.Rd |only man/parseCLAMP.Rd |only man/parseMedEx.Rd |only man/parseMedExtractR.Rd |only man/parseMedXN.Rd |only man/processLastDose.Rd |only man/readTransform.Rd |only man/stdzDose.Rd |only man/stdzDuration.Rd |only man/stdzFreq.Rd |only man/stdzRoute.Rd |only man/stdzStrength.Rd |only man/tac_lab.Rd |only man/tac_metadata.Rd |only man/tac_mxr_parsed.Rd |only man/zeroOneTable.Rd | 78 +++++++++---------- vignettes |only 83 files changed, 602 insertions(+), 260 deletions(-)
Title: Data Science Box of Pandora Miscellaneous
Description: Tool collection for common and not so common data science use cases. This includes
custom made algorithms for data management as well as value calculations that are hard to find
elsewhere because of their specificity but would be a waste to get lost nonetheless.
Currently available functionality: find
sub-graphs in an edge list data.frame, find mode or modes in a vector of values, extract
(a) specific regular expression group(s), generate ISO time stamps that play well with
file names, or generate URL parameter lists by expanding value combinations.
Author: Peter Meissner [aut, cre]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between dsmisc versions 0.3.2 dated 2020-09-09 and 0.3.3 dated 2020-09-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 9 ++++++++- README.md | 20 +++++++++----------- src/graphs_find_subgraphs.cpp | 1 - 5 files changed, 25 insertions(+), 21 deletions(-)
Title: Interactive Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 1.7 dated 2020-03-08 and 1.8 dated 2020-09-12
DESCRIPTION | 8 +- MD5 | 20 +++--- NAMESPACE | 7 +- NEWS | 14 ++++ R/AddIns.R | 155 ++++++++++++++++++++++++++++++++++------------- R/Dialogs.R | 57 +++++++++++++++-- inst/rstudio/addins.dcf | 20 ++++++ man/DescToolsAddIns.Rd | 9 -- man/ModelDlg.Rd | 1 man/WrdBookmarks.Rd |only man/figures/ModelDlg.png |binary man/figures/maps.png |only 12 files changed, 221 insertions(+), 70 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Network Analysis of Dependencies of CRAN Packages
Description: The dependencies of CRAN packages can be analysed in a network fashion. For each package we can obtain the packages that it depends, imports, suggests, etc. By iterating this procedure over a number of packages, we can build, visualise, and analyse the dependency network, enabling us to have a bird's-eye view of the CRAN ecosystem. One aspect of interest is the number of reverse dependencies of the packages, or equivalently the in-degree distribution of the dependency network. This can be fitted by the power law and/or an extreme value mixture distribution <arXiv:2008.03073>, of which functions are provided.
Author: Clement Lee [aut, cre] (<https://orcid.org/0000-0003-1785-8671>)
Maintainer: Clement Lee <clement.lee.tm@outlook.com>
Diff between crandep versions 0.1.0 dated 2020-08-11 and 0.1.1 dated 2020-09-12
DESCRIPTION | 11 + MD5 | 38 +++--- NEWS.md | 47 ++++++++ R/cleaning.R | 12 -- R/data.R | 16 ++ README.md | 131 +++++++++++----------- data/chi_citations.rda |only inst/doc/cran.R | 15 ++ inst/doc/cran.Rmd | 24 ++-- inst/doc/cran.html | 257 ++++++++++++++++++++++----------------------- inst/doc/degree.html | 50 ++++---- inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 12 +- man/chi_citations.Rd |only man/cran_dependencies.Rd | 2 man/get_dep_str.Rd | 5 man/get_dep_vec.Rd | 6 - man/html_text_vec.Rd | 4 src/algo.cpp | 2 vignettes/cran.Rmd | 24 ++-- vignettes/introduction.Rmd | 2 21 files changed, 362 insertions(+), 298 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-30 0.1.1
2016-05-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-05 0.5.1
Title: Number Names
Description: Converts numeric vectors to character vectors of
English number names. Provides conversion to cardinals, ordinals,
numerators, and denominators. Supports negative and non-integer
numbers.
Author: Alexander Rossell Hayes [aut, cre]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between nombre versions 0.2.0 dated 2020-07-18 and 0.3.0 dated 2020-09-12
nombre-0.2.0/nombre/inst |only nombre-0.3.0/nombre/DESCRIPTION | 12 - nombre-0.3.0/nombre/MD5 | 54 ++++--- nombre-0.3.0/nombre/NAMESPACE | 43 +++-- nombre-0.3.0/nombre/NEWS.md | 56 +++++-- nombre-0.3.0/nombre/R/adverbial.R | 26 ++- nombre-0.3.0/nombre/R/cardinal.R | 131 +++++++++--------- nombre-0.3.0/nombre/R/collective.R | 71 ++++++++- nombre-0.3.0/nombre/R/convert_fraction.R | 31 ---- nombre-0.3.0/nombre/R/denominator.R | 26 ++- nombre-0.3.0/nombre/R/numerator.R |only nombre-0.3.0/nombre/R/ordinal.R | 23 ++- nombre-0.3.0/nombre/R/s3_methods.R |only nombre-0.3.0/nombre/R/set_config.R |only nombre-0.3.0/nombre/R/uncardinal.R |only nombre-0.3.0/nombre/R/zzz.R |only nombre-0.3.0/nombre/README.md | 42 +++-- nombre-0.3.0/nombre/man/adverbial.Rd | 11 - nombre-0.3.0/nombre/man/cardinal.Rd | 63 +++++--- nombre-0.3.0/nombre/man/collective.Rd | 39 ++++- nombre-0.3.0/nombre/man/denominator.Rd | 13 + nombre-0.3.0/nombre/man/nombre-package.Rd | 1 nombre-0.3.0/nombre/man/numerator.Rd |only nombre-0.3.0/nombre/man/ordinal.Rd | 19 +- nombre-0.3.0/nombre/man/reexports.Rd |only nombre-0.3.0/nombre/man/set_config.Rd |only nombre-0.3.0/nombre/man/uncardinal.Rd |only nombre-0.3.0/nombre/tests/testthat/test-cardinal.R | 22 +++ nombre-0.3.0/nombre/tests/testthat/test-collective.R | 14 + nombre-0.3.0/nombre/tests/testthat/test-denominator.R | 8 - nombre-0.3.0/nombre/tests/testthat/test-ordinal.R | 4 nombre-0.3.0/nombre/tests/testthat/test-s3_methods.R |only nombre-0.3.0/nombre/tests/testthat/test-set_config.R |only nombre-0.3.0/nombre/tests/testthat/test-uncardinal.R |only 34 files changed, 475 insertions(+), 234 deletions(-)
Title: Raster Layers for 'ggplot2'
Description: Provides a set of geoms to rasterize only specific layers of the plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.
Author: Viktor Petukhov [aut, cph],
Teun van den Brand [aut],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between ggrastr versions 0.1.9 dated 2020-06-20 and 0.2.0 dated 2020-09-12
DESCRIPTION | 14 +- MD5 | 46 ++++---- NAMESPACE | 9 - R/geom-beeswarm-rast.R | 38 ------ R/geom-boxplot-jitter.R | 33 +++-- R/geom-jitter-rast.R | 40 ------- R/geom-point-rast.R | 65 ----------- R/geom-quasirandom-rast.R | 40 ------- R/geom-tile-rast.R | 67 ----------- R/geom-violin-rast.R |only R/rasterise.R |only README.md | 48 ++++++-- build/vignette.rds |binary inst/doc/Raster_geoms.R | 131 +++++++++++++++++----- inst/doc/Raster_geoms.Rmd | 229 ++++++++++++++++++++++++++++++++-------- inst/doc/Raster_geoms.html | 234 +++++++++++++++++++++++++++++++---------- man/geom_beeswarm_rast.Rd | 68 +---------- man/geom_boxplot_jitter.Rd | 11 - man/geom_jitter_rast.Rd | 69 ------------ man/geom_point_rast.Rd | 60 ---------- man/geom_quasirandom_rast.Rd | 68 +---------- man/geom_tile_rast.Rd | 60 ---------- man/geom_violin_rast.Rd |only man/rasterise.Rd |only vignettes/Raster_geoms.Rmd | 229 ++++++++++++++++++++++++++++++++-------- vignettes/boxplot_1000000.png |only vignettes/ggvec_50000_plot.png |only 27 files changed, 798 insertions(+), 761 deletions(-)